Methanothermobacter marburgensis str. Marburg plasmid pMTBMA4, complete sequence.
type: Entry
definition: Methanothermobacter marburgensis str. Marburg plasmid pMTBMA4, complete sequence.
sequence version: NC_014409.1
sequence date: 2023-02-22
sequence: sequence
division: CON
label: NC_014409.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02603260
keyword: RefSeq
source: Methanothermobacter marburgensis str. Marburg
organism: Methanothermobacter marburgensis str. Marburg
taxonomy: Archaea; Euryarchaeota; Methanomada group; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanothermobacter.
reference: 1
references: 20802048
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP001711.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/22/2023 13:36:47\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,783\nCDSs (total) :: 1,734\nGenes (coding) :: 1,718\nCDSs (with protein) :: 1,718\nGenes (RNA) :: 49\nrRNAs :: 3, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 2, 2 (5S, 16S, 23S)\ntRNAs :: 40\nncRNAs :: 2\nPseudo Genes (total) :: 16\nCDSs (without protein) :: 16\nPseudo Genes (ambiguous residues) :: 0 of 16\nPseudo Genes (frameshifted) :: 9 of 16\nPseudo Genes (incomplete) :: 7 of 16\nPseudo Genes (internal stop) :: 3 of 16\nPseudo Genes (multiple problems) :: 3 of 16\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 4440
topology: circular
so has quality: SO_0000988
location: 1..4440
location: region:1-4440:1
RO_0002162: 79929

NC_014409
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02603260
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence of Methanothermobacter marburgensis, a methanoarchaeon model organism
author: Liesegang, H.
author: Kaster, A.K.
author: Wiezer, A.
author: Goenrich, M.
author: Wollherr, A.
author: Seedorf, H.
author: Gottschalk, G.
author: Thauer, R.K.
journal: J Bacteriol
volume: 192
issue: 21
pages: 5850-5851
year: 2010
pubmed: 20802048

20802048
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Kaster, A.
author: Seedorf, H.
author: Goenrich, M.
author: Wiezer, A.
author: Liesegang, H.
author: Thauer, R.
author: Gottschalk, G.
journal: Submitted (21-AUG-2009) Goettingen Genomics Laboratory, Georg-August University Goettingen, Grisebachstrasse 8, Goettingen, Lower-Saxony D-37077, Germany

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4440:1
position: 4440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4440:1:source
so part of: sequence
organism: Methanothermobacter marburgensis str. Marburg
mol type: genomic DNA
strain: Marburg
culture collection: DSM:2133
type material: type strain of Methanothermobacter marburgensis
plasmid: pMTBMA4

79929
type: Taxonomy
SIO_000068: taxonomy

MTBMA_RS09040
type: Gene
subclass of: SO_0000704
RO_0002162: 79929
locus tag: MTBMA_RS09040
so part of: sequence
location: join(4253..4440,1..19)
location: region:1-4440:1
so has part: feature:4253-4440:1:exon
so has part: feature:1-19:1:exon
subclass of: SO_0000010

41345246
type: Gene
SIO_000068: ncbigene

urn:…
SIO_000300: 1
SIO_000628: feature:4253-4440:1:exon

position:4253:1
position: 4253
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-19:1:exon

position:19:1
position: 19
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

MTBMA_RS09040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79929
locus tag: MTBMA_RS09040
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDKKAITVEIGIEEYLKLQDLRVESLKTGRFVSVGCVMRDALKHYLQEVDLREKYLQQAEDNKKELIR
SIO_010081: MTBMA_RS09040
subclass of: SO_0000673
so part of: MTBMA_RS09040
location: join(4253..4440,1..19)
location: region:1-4440:1
so has part: feature:4253-4440:1:exon
so has part: feature:1-19:1:exon

WP_010868903.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4253-4440:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-19:1:exon

MTBMA_RS08795
type: Gene
subclass of: SO_0000704
RO_0002162: 79929
locus tag: MTBMA_RS08795
old locus tag: MTBMA_p00010
so part of: sequence
location: 101..2515
location: region:101-2515:1
so has part: feature:101-2515:1:exon
subclass of: SO_0000010

9705513
type: Gene
SIO_000068: ncbigene

position:101:1
position: 101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2515:1
position: 2515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:101-2515:1:exon

MTBMA_RS08795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79929
locus tag: MTBMA_RS08795
old locus tag: MTBMA_p00010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013296576.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNSMSKKEYKHFERSITLHIKHADFELVGQKYRGRDLYEYLFIKGSKPIHTATGKTSNLYEIISEDKGPDEALKIIGDTFTEDDINILLRGGFHDDNKTPEGVLELIQHILLAGEVLHPGGDVIEPQSFKDYPEKIQAYADQLINDDSIDILESITRVIGEAHYGDEKAVKLLLLSIGTLFLRDTPPVHQALRGSTGSGKTDLVLKTVLAVPERYVHILRSASPKYLFYASETGILREDYNIFVFDDIELNDEIIAISKTITDNILPEKEHHTVKDQEALKLEIPGEGLAIFTRARDIHDNELNDRLLYNNPVEDEDHSRFVKEKIKEEAISGSVMDDKRIMEAYEVIRAVYERLIEGDVRVYNPYLHLLDLRGYSNRDIKHIVGLVKAVTWYRQHKRRREGSYVREGGHDIIIGTEDDLRDALELWMSIDTLQRYKLDRKQEKFLKSLPEYSDELYKQHTNSIFWDDPELPTYSGLAERLGLSKSTIYRWVNGRHEKDRDIEGLKDKGNKGLVIIKPLEPENPKSPSLIYRKPGIVGKHLQLKNGGEASESGFTLFPSVDMDLGTAENARIWKKTIFHSMVLGVSQIQSNIQDNLIQEWLDNNTNPMETHEDVVEFIVDVRAFIHDNLQTPPDVTCNPVYTILGNGKHPLETGGESSNHGDKHDLVLTRAGSIVGNRVNSENKGSEPSDEMTCFPQKNYYSGVGGDLQAEYTDAMARGDDSMIGELEARIPPDTPENLEERRVTLKKKLKDKSISAGEKMELLKELGGVLSTLMRKPVDNERIVEYAKELGEVRREIEDMQGG
SIO_010081: MTBMA_RS08795
subclass of: SO_0000673
so part of: MTBMA_RS08795
location: 101..2515
location: region:101-2515:1
so has part: feature:101-2515:1:exon

WP_013296576.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:101-2515:1:exon

MTBMA_RS08800
type: Gene
subclass of: SO_0000704
RO_0002162: 79929
locus tag: MTBMA_RS08800
old locus tag: MTBMA_p00020
so part of: sequence
location: 2522..2923
location: region:2522-2923:1
so has part: feature:2522-2923:1:exon
subclass of: SO_0000010

9705510
type: Gene
SIO_000068: ncbigene

position:2522:1
position: 2522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2923:1
position: 2923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2522-2923:1:exon

MTBMA_RS08800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79929
locus tag: MTBMA_RS08800
old locus tag: MTBMA_p00020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010868906.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPLSLATSNRVPEAWRDLIISAMSNLAPLGRDPNTKEFTDELHHLSGEDMGTVMEILGIAVAEGFLEYDDHYRLILGPAGEEYVRLSSRVKVEETRRLTLRRALRRFRDKRRACRHLSLGDKALYDYYYHGGL
SIO_010081: MTBMA_RS08800
subclass of: SO_0000673
so part of: MTBMA_RS08800
location: 2522..2923
location: region:2522-2923:1
so has part: feature:2522-2923:1:exon

WP_010868906.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2522-2923:1:exon

MTBMA_RS09100
type: Gene
subclass of: SO_0000704
RO_0002162: 79929
locus tag: MTBMA_RS09100
so part of: sequence
location: complement(2925..3200)
location: region:2925-3200:-1
so has part: feature:2925-3200:-1:exon
subclass of: SO_0000010

55563922
type: Gene
SIO_000068: ncbigene

position:2925:-1
position: 2925
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3200:-1
position: 3200
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2925-3200:-1:exon

MTBMA_RS09100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79929
locus tag: MTBMA_RS09100
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKIDDNRVLEFNLEELIGFDPNEPLIDFCLEDLPVFDDLECPDLKELLEFNLDDIPEFKPEDLKGLLEGFGDLDLEGFVDFHIPPNKDIEL
SIO_010081: MTBMA_RS09100
subclass of: SO_0000673
so part of: MTBMA_RS09100
location: complement(2925..3200)
location: region:2925-3200:-1
so has part: feature:2925-3200:-1:exon

WP_048901314.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2925-3200:-1:exon

MTBMA_RS09105
type: Gene
subclass of: SO_0000704
RO_0002162: 79929
locus tag: MTBMA_RS09105
so part of: sequence
location: 3697..3864
location: region:3697-3864:1
so has part: feature:3697-3864:1:exon
subclass of: SO_0000010

55563923
type: Gene
SIO_000068: ncbigene

position:3697:1
position: 3697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3864:1
position: 3864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3697-3864:1:exon

MTBMA_RS09105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79929
locus tag: MTBMA_RS09105
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIIGVDCMAMEDVGVPFSNRLTRQGNIKVPADLRDALKLKPGDLLVVEIKKVDRS
SIO_010081: MTBMA_RS09105
subclass of: SO_0000673
so part of: MTBMA_RS09105
location: 3697..3864
location: region:3697-3864:1
so has part: feature:3697-3864:1:exon

WP_171770418.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3697-3864:1:exon