Sutcliffiella horikoshii strain 20a plasmid unnamed1, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Sutcliffiella.
Complete Genome Sequence of the Bacillus horikoshii 20a strain from Cuatro Cienegas, Coahuila, Mexico
Submitted (18-APR-2017) Ingeneria Genetica, Centro de Investigacion y de Estudios Avanzados del IPN - Irapuato, Km. 9.6 Libramiento Norte Carr. Irapuato-Leon, Irapuato, Guanajuato 36821, Mexico
REFSEQ INFORMATION: The reference sequence is identical to\nCP020881.1.\nBacteria and source DNA available from Laboratorio de Bacteriologia\nMolecular, Departamento de Ingeneria Genetica, CINVESTAV, Irapuato,\nMexico.\nAnnotation modified by submitter.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: APR-2017\nAssembly Method :: Canu v. 1.3; Circlator v. 1.3\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 192.45x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/04/2023 02:59:18\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,349\nCDSs (total) :: 4,247\nGenes (coding) :: 4,213\nCDSs (with protein) :: 4,213\nGenes (RNA) :: 102\nrRNAs :: 8, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 8, 8 (5S, 16S, 23S)\ntRNAs :: 73\nncRNAs :: 5\nPseudo Genes (total) :: 34\nCDSs (without protein) :: 34\nPseudo Genes (ambiguous residues) :: 0 of 34\nPseudo Genes (frameshifted) :: 15 of 34\nPseudo Genes (incomplete) :: 17 of 34\nPseudo Genes (internal stop) :: 5 of 34\nPseudo Genes (multiple problems) :: 3 of 34\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Mexico: Churince, Cuatro Cienegas, Coahuila
COORDINATES: similar to AA sequence:RefSeq:WP_019395236.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013691.2
COORDINATES: protein motif:HMM:NF024091.2
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: protein motif:HMM:NF014186.2
GO:0032977 - membrane insertase activity [Evidence IEA]
YidC/Oxa1 family membrane protein insertase
COORDINATES: protein motif:HMM:NF016296.2
LytTR family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015863243.1
COORDINATES: similar to AA sequence:RefSeq:WP_009361144.1
COORDINATES: protein motif:HMM:NF024244.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019535962.1
type III toxin-antitoxin system ToxN/AbiQ family toxin