Halostagnicola larsenii XH-48 plasmid unnamed2, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Halostagnicola.
Submitted (10-JAN-2014) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP007057.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 402803\nSource DNA and Organism available from Iain Anderson\n(IJAnderson@lbl.gov)\nSource DNA available from Iain Anderson (IJAnderson@lbl.gov)\nOrganism available from Iain Anderson (IJAnderson@lbl.gov)\nContacts: Iain Anderson (IJAnderson@lbl.gov)\n Tanja Woyke (microbe@cuba.jgi-psf.org)\nWhole genome sequencing and draft assembly at JGI-PGF\nAnnotation by JGI-ORNL\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Halostagnicola larsenii XH-48, DSM\n 17691\nlat_lon :: 43.916 115.616\ncountry :: China\nref_biomaterial :: DSM 17691\nbiotic_relationship :: Free living\nrel_to_oxygen :: Obligate aerobe\nisol_growth_condt :: 16825623\nassembly :: ALLPATHS v. R37654\nenvironment :: Aquatic; Fresh water; Sediment\nsequencing_meth :: WGS\nGOLD Stamp ID :: Gi05997\nCurrent Finishing Status :: Level 6: Finished\nType Strain :: Yes\nFunding Program :: DOE-CSP 2010\nGene Calling Method :: Prodigal, GenePRIMP\nIsolation Site :: sediment of saline Lake Xilinhot, Inner\n Mongolia, China\nCell Shape :: Rod-shaped\nTemperature Range :: Mesophile\nTemperature Optimum :: 37\npH :: 7.0 - 8.0\nGram Staining :: Gram-\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Finished\nCurrent Finishing Status :: Finished\nAssembly Method :: ALLPATHS v. R37654\nGenome Coverage :: Unknown\nSequencing Technology :: 454-GS-FLX-Titanium; Illumina HiSeq\n 2000\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/07/2023 02:25:20\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,095\nCDSs (total) :: 4,040\nGenes (coding) :: 3,947\nCDSs (with protein) :: 3,947\nGenes (RNA) :: 55\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 93\nCDSs (without protein) :: 93\nPseudo Genes (ambiguous residues) :: 0 of 93\nPseudo Genes (frameshifted) :: 29 of 93\nPseudo Genes (incomplete) :: 76 of 93\nPseudo Genes (internal stop) :: 18 of 93\nPseudo Genes (multiple problems) :: 25 of 93\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_006648141.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_015911601.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007694266.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008455402.1
COORDINATES: similar to AA sequence:RefSeq:WP_008455404.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014864702.1
COORDINATES: similar to AA sequence:RefSeq:WP_006824253.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012946109.1
GO:0032559 - adenyl ribonucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008010546.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012941783.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006813 - potassium ion transport [Evidence IEA]
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008003801.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182164.1
COORDINATES: similar to AA sequence:RefSeq:WP_006650711.1
GO:0015079 - potassium ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008012944.1
COORDINATES: similar to AA sequence:RefSeq:WP_004056146.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006824964.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183352.1
COORDINATES: similar to AA sequence:RefSeq:WP_005577145.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013881966.1
four-helix bundle copper-binding protein
COORDINATES: protein motif:HMM:NF012673.2
GO:0046855 - inositol phosphate dephosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012659656.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006054393.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014021.2
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007107559.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF024753.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_006107454.1
COORDINATES: similar to AA sequence:RefSeq:WP_006107450.1
COORDINATES: similar to AA sequence:RefSeq:WP_005559818.1
COORDINATES: protein motif:HMM:NF019928.2
COORDINATES: similar to AA sequence:RefSeq:WP_006666019.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF023043.2
COORDINATES: similar to AA sequence:RefSeq:WP_015321684.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182422.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013875645.1
COORDINATES: similar to AA sequence:RefSeq:WP_004059314.1
COORDINATES: protein motif:HMM:TIGR00369.1
GO:0047617 - acyl-CoA hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016831.2
COORDINATES: similar to AA sequence:RefSeq:WP_013880493.1
COORDINATES: similar to AA sequence:RefSeq:WP_013880494.1
NAD(P)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007140153.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009366650.1
COORDINATES: similar to AA sequence:RefSeq:WP_009366651.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006107319.1
COORDINATES: similar to AA sequence:RefSeq:WP_006107318.1
GO:0004020 - adenylylsulfate kinase activity [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006107317.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053154.1
COORDINATES: similar to AA sequence:RefSeq:WP_007704534.1
COORDINATES: similar to AA sequence:RefSeq:WP_015233345.1
COORDINATES: protein motif:HMM:NF020397.2
COORDINATES: similar to AA sequence:RefSeq:WP_015300261.1
COORDINATES: similar to AA sequence:RefSeq:WP_006652808.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090939.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895583.1
COORDINATES: similar to AA sequence:RefSeq:WP_008421148.1
GO:0016791 - phosphatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012945379.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111093.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187446.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881978.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667141.1
YeeE/YedE thiosulfate transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006179406.1
GO:0006817 - phosphate ion transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014030967.1
Tm-1-like ATP-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008892584.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892583.1
phosphoenolpyruvate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008165145.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006068174.1
COORDINATES: similar to AA sequence:RefSeq:WP_012941538.1
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
succinylglutamate desuccinylase/aspartoacylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611602.1
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
COORDINATES: protein motif:HMM:NF024583.2
COORDINATES: protein motif:HMM:NF028237.2
histidine kinase N-terminal 7TM domain-containing protein
COORDINATES: protein motif:HMM:NF016906.2
right-handed parallel beta-helix repeat-containing protein
COORDINATES: protein motif:HMM:NF024627.2
COORDINATES: similar to AA sequence:RefSeq:WP_008165172.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048645.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009762160.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013440732.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004214254.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182271.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007976935.1
COORDINATES: protein motif:HMM:NF024771.2
COORDINATES: protein motif:HMM:NF013073.2
COORDINATES: protein motif:HMM:NF040257.1
COORDINATES: similar to AA sequence:RefSeq:WP_006185595.1
COORDINATES: similar to AA sequence:RefSeq:WP_009733204.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006600644.1
COORDINATES: similar to AA sequence:RefSeq:WP_007275766.1
COORDINATES: similar to AA sequence:RefSeq:WP_011224099.1
COORDINATES: similar to AA sequence:RefSeq:WP_007740619.1
COORDINATES: similar to AA sequence:RefSeq:WP_009733205.1
COORDINATES: similar to AA sequence:RefSeq:WP_007188337.1
COORDINATES: similar to AA sequence:RefSeq:WP_008455810.1
COORDINATES: similar to AA sequence:RefSeq:WP_006108105.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006108106.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009377339.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825326.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012946172.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF013429.2
GO:0003824 - catalytic activity [Evidence IEA]
sugar phosphate isomerase/epimerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008006305.1
COORDINATES: similar to AA sequence:RefSeq:WP_007190649.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006883289.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667827.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005556680.1
GO:0016853 - isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006433152.1
GO:0008927 - mannonate dehydratase activity [Evidence IEA]
GO:0006064 - glucuronate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012944991.1
COORDINATES: similar to AA sequence:RefSeq:WP_012944990.1
COORDINATES: similar to AA sequence:RefSeq:WP_012944988.1
COORDINATES: similar to AA sequence:RefSeq:WP_012944987.1
COORDINATES: similar to AA sequence:RefSeq:WP_012944986.1
COORDINATES: similar to AA sequence:RefSeq:WP_012944985.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594401.1
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004048295.1
GO:0009436 - glyoxylate catabolic process [Evidence IEA]; GO:0071704 - organic substance metabolic process [Evidence IEA]
dihydrodipicolinate synthase family protein
COORDINATES: protein motif:HMM:NF012516.2
GO:0004650 - polygalacturonase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013199342.1
COORDINATES: similar to AA sequence:RefSeq:WP_006107496.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012942013.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]
PEP/pyruvate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012945456.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945455.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945454.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945453.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945452.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012945451.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945449.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945447.1
COORDINATES: similar to AA sequence:RefSeq:WP_012807854.1
GO:0102662 - malonate-semialdehyde dehydrogenase (acetylating, NAD+) activity [Evidence IEA]
CoA-acylating methylmalonate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_012945444.1
COORDINATES: similar to AA sequence:RefSeq:WP_012807856.1
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_012945440.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945439.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945437.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945436.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945435.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945434.1
COORDINATES: similar to AA sequence:RefSeq:WP_005537106.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008443841.1
COORDINATES: similar to AA sequence:RefSeq:WP_005579631.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_006433233.1
GO:0050096 - methylaspartate ammonia-lyase activity [Evidence IEA]
GO:0019670 - anaerobic glutamate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006649873.1
COORDINATES: similar to AA sequence:RefSeq:WP_015299225.1
GO:0015297 - antiporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006433236.1
COORDINATES: protein motif:HMM:NF013434.2
COORDINATES: protein motif:HMM:NF024940.2
COORDINATES: protein motif:HMM:NF024980.2
COORDINATES: protein motif:HMM:NF024751.2
COORDINATES: similar to AA sequence:RefSeq:WP_006825367.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006107178.1
COORDINATES: protein motif:HMM:NF022072.2
COORDINATES: similar to AA sequence:RefSeq:WP_014732685.1
COORDINATES: similar to AA sequence:RefSeq:WP_006651332.1
COORDINATES: similar to AA sequence:RefSeq:WP_008422551.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184794.1
transcription initiation factor IIB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006654561.1
putative glycolipid-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004216118.1
COORDINATES: similar to AA sequence:RefSeq:WP_012943125.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945884.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945646.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945647.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945648.1
COORDINATES: similar to AA sequence:RefSeq:WP_006055719.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013646.2
COORDINATES: similar to AA sequence:RefSeq:WP_006431591.1
COORDINATES: similar to AA sequence:RefSeq:WP_007699045.1
COORDINATES: similar to AA sequence:RefSeq:WP_012943319.1
COORDINATES: protein motif:HMM:NF027245.2
bacterio-opsin activator domain-containing protein
COORDINATES: protein motif:HMM:NF036897.2
COORDINATES: similar to AA sequence:RefSeq:WP_012996710.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945931.1
COORDINATES: similar to AA sequence:RefSeq:WP_005040120.1
COORDINATES: similar to AA sequence:RefSeq:WP_008390206.1
GO:0015295 - solute:proton symporter activity [Evidence IEA]
GO:0015718 - monocarboxylic acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006055822.1
COORDINATES: similar to AA sequence:RefSeq:WP_006055823.1
COORDINATES: similar to AA sequence:RefSeq:WP_005532976.1
GO:0019239 - deaminase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006183394.1
COORDINATES: similar to AA sequence:RefSeq:WP_007981208.1
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015319604.1
COORDINATES: protein motif:HMM:NF019949.2
COORDINATES: similar to AA sequence:RefSeq:WP_018128779.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053133.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF037100.2
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006088395.1
COORDINATES: similar to AA sequence:RefSeq:WP_006088396.1
COORDINATES: similar to AA sequence:RefSeq:WP_007258507.1
COORDINATES: similar to AA sequence:RefSeq:WP_006088398.1
COORDINATES: similar to AA sequence:RefSeq:WP_007702288.1
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: similar to AA sequence:RefSeq:WP_004968466.1
COORDINATES: similar to AA sequence:RefSeq:WP_004041131.1
COORDINATES: similar to AA sequence:RefSeq:WP_007274178.1
COORDINATES: similar to AA sequence:RefSeq:WP_008573052.1
COORDINATES: similar to AA sequence:RefSeq:WP_006433061.1
COORDINATES: similar to AA sequence:RefSeq:WP_008422869.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_006885277.1
COORDINATES: similar to AA sequence:RefSeq:WP_006651305.1
COORDINATES: similar to AA sequence:RefSeq:WP_007696247.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0019346 - transsulfuration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006826328.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030151 - molybdenum ion binding [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004216283.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008611770.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895172.1
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:1902600 - proton transmembrane transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012945087.1
dicarboxylate/amino acid:cation symporter
COORDINATES: similar to AA sequence:RefSeq:WP_006076635.1
COORDINATES: similar to AA sequence:RefSeq:WP_006106791.1
COORDINATES: similar to AA sequence:RefSeq:WP_007274249.1
COORDINATES: similar to AA sequence:RefSeq:WP_020576199.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019113.2
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: protein motif:HMM:NF024808.2
sugar ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF013722.2
MaoC/PaaZ C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF014893.2
COORDINATES: similar to AA sequence:RefSeq:WP_008895760.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895759.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006106795.1
COORDINATES: similar to AA sequence:RefSeq:WP_006106796.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895756.1
COORDINATES: similar to AA sequence:RefSeq:WP_006106798.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008895754.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012945009.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
glycoside hydrolase family 2 TIM barrel-domain containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008015376.1
COORDINATES: similar to AA sequence:RefSeq:WP_007992855.1
COORDINATES: similar to AA sequence:RefSeq:WP_007992857.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007698828.1
COORDINATES: similar to AA sequence:RefSeq:WP_006089953.1
COORDINATES: similar to AA sequence:RefSeq:WP_008164923.1
COORDINATES: similar to AA sequence:RefSeq:WP_008164926.1
COORDINATES: similar to AA sequence:RefSeq:WP_008421957.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762266.1
COORDINATES: protein motif:HMM:NF012377.2
GO:0071704 - organic substance metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014031261.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183341.1
COORDINATES: similar to AA sequence:RefSeq:WP_008015317.1
COORDINATES: similar to AA sequence:RefSeq:WP_004216157.1
COORDINATES: similar to AA sequence:RefSeq:WP_020221492.1
COORDINATES: similar to AA sequence:RefSeq:WP_006885444.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611983.1
COORDINATES: similar to AA sequence:RefSeq:WP_007981399.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945131.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006166638.1
COORDINATES: similar to AA sequence:RefSeq:WP_003631684.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895873.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006649875.1
COORDINATES: similar to AA sequence:RefSeq:WP_007110314.1
enoyl-CoA hydratase/isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006649864.1
3-hydroxyacyl-CoA dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006649861.1
COORDINATES: similar to AA sequence:RefSeq:WP_008456674.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006649857.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006183959.1
GO:0016746 - acyltransferase activity [Evidence IEA]
GO:0006635 - fatty acid beta-oxidation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007261400.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182789.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182790.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182791.1
COORDINATES: similar to AA sequence:RefSeq:WP_006432331.1
COORDINATES: similar to AA sequence:RefSeq:WP_012943494.1
COORDINATES: similar to AA sequence:RefSeq:WP_015299235.1
COORDINATES: protein motif:HMM:NF012401.2
COORDINATES: similar to AA sequence:RefSeq:WP_006649848.1
COORDINATES: similar to AA sequence:RefSeq:WP_006649844.1
COORDINATES: similar to AA sequence:RefSeq:WP_006649843.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004267850.1
COORDINATES: similar to AA sequence:RefSeq:WP_006649839.1
COORDINATES: similar to AA sequence:RefSeq:WP_006088459.1
COORDINATES: similar to AA sequence:RefSeq:WP_006432316.1
COORDINATES: protein motif:HMM:NF012792.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012996429.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825307.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060506.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060505.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014863493.1
COORDINATES: similar to AA sequence:RefSeq:WP_006108569.1
COORDINATES: similar to AA sequence:RefSeq:WP_006107445.1
COORDINATES: similar to AA sequence:RefSeq:WP_004056155.1
COORDINATES: similar to AA sequence:RefSeq:WP_016735464.1
GO:0008703 - 5-amino-6-(5-phosphoribosylamino)uracil reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020670883.1
COORDINATES: similar to AA sequence:RefSeq:WP_018219284.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667442.1
COORDINATES: similar to AA sequence:RefSeq:WP_005559283.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863220.1
lysylphosphatidylglycerol synthase transmembrane domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006827361.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184916.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
cbb3-type cytochrome c oxidase subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_006185777.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667351.1
COORDINATES: similar to AA sequence:RefSeq:WP_008096861.1
PAS domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_007260885.1
COORDINATES: similar to AA sequence:RefSeq:WP_008422422.1
COORDINATES: similar to AA sequence:RefSeq:WP_007260883.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007274069.1
COORDINATES: similar to AA sequence:RefSeq:WP_007260873.1
COORDINATES: similar to AA sequence:RefSeq:WP_006827598.1
formate/nitrite transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006114694.1
COORDINATES: similar to AA sequence:RefSeq:WP_007694542.1
COORDINATES: similar to AA sequence:RefSeq:WP_007694543.1
COORDINATES: similar to AA sequence:RefSeq:WP_006106863.1
COORDINATES: similar to AA sequence:RefSeq:WP_007694547.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667772.1
GO:0046559 - alpha-glucuronidase activity [Evidence IEA]
GO:0045493 - xylan catabolic process [Evidence IEA]
alpha-glucuronidase family glycosyl hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_006824237.1
COORDINATES: similar to AA sequence:RefSeq:WP_006106868.1
glycoside hydrolase family 3 N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004956875.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009377447.1
COORDINATES: similar to AA sequence:RefSeq:WP_010612727.1
COORDINATES: similar to AA sequence:RefSeq:WP_009377449.1
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007689872.1
COORDINATES: protein motif:HMM:NF013080.2
GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007696026.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612288.1
COORDINATES: similar to AA sequence:RefSeq:WP_006823980.1
COORDINATES: similar to AA sequence:RefSeq:WP_015374662.1
COORDINATES: similar to AA sequence:RefSeq:WP_008452036.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008418100.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667403.1
COORDINATES: similar to AA sequence:RefSeq:WP_006179701.1
COORDINATES: protein motif:HMM:NF012335.2
COORDINATES: similar to AA sequence:RefSeq:WP_007259764.1
COORDINATES: similar to AA sequence:RefSeq:WP_007259765.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863419.1
GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017343383.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006628503.1
COORDINATES: similar to AA sequence:RefSeq:WP_008422464.1
GO:0070403 - NAD+ binding [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006089895.1
COORDINATES: similar to AA sequence:RefSeq:WP_013880104.1
COORDINATES: similar to AA sequence:RefSeq:WP_006064792.1
COORDINATES: similar to AA sequence:RefSeq:WP_004595053.1
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: similar to AA sequence:RefSeq:WP_006651823.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016625 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor [Evidence IEA]
aldehyde ferredoxin oxidoreductase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF014636.2
COORDINATES: protein motif:HMM:NF019604.2
COORDINATES: protein motif:HMM:TIGR00976.1
COORDINATES: similar to AA sequence:RefSeq:WP_006824016.1
beta-ketoacyl synthase N-terminal-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007260971.1
COORDINATES: protein motif:HMM:NF024950.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF025888.2
COORDINATES: protein motif:HMM:NF012706.2
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: protein motif:HMM:NF014867.2
COORDINATES: protein motif:HMM:NF012286.2
COORDINATES: similar to AA sequence:RefSeq:WP_006667509.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006107357.1
COORDINATES: similar to AA sequence:RefSeq:WP_007260906.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006824002.1
COORDINATES: similar to AA sequence:RefSeq:WP_006824003.1
thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_006107361.1
alpha-ketoacid dehydrogenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_007274703.1
GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0051068 - dihydrolipoamide metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008576415.1
GO:0006096 - glycolytic process [Evidence IEA]
dihydrolipoamide acetyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015789956.1
COORDINATES: similar to AA sequence:RefSeq:WP_008385306.1
GO:0004489 - methylenetetrahydrofolate reductase (NAD(P)H) activity [Evidence IEA]
GO:0006555 - methionine metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006667499.1
COORDINATES: similar to AA sequence:RefSeq:WP_006433169.1
GO:0004156 - dihydropteroate synthase activity [Evidence IEA]
GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008385324.1
GO:0046872 - metal ion binding [Evidence IEA]
anthranilate synthase component I family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015790211.1
GO:0046820 - 4-amino-4-deoxychorismate synthase activity [Evidence IEA]; GO:0004049 - anthranilate synthase activity [Evidence IEA]
GO:0000162 - tryptophan biosynthetic process [Evidence IEA]
aminodeoxychorismate/anthranilate synthase component II
COORDINATES: similar to AA sequence:RefSeq:WP_008325138.1
GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IEA]
bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD
COORDINATES: similar to AA sequence:RefSeq:WP_007694006.1
COORDINATES: similar to AA sequence:RefSeq:WP_007694004.1
COORDINATES: protein motif:HMM:NF012607.2
COORDINATES: similar to AA sequence:RefSeq:WP_007693989.1
COORDINATES: similar to AA sequence:RefSeq:WP_007693987.1
class I adenylate-forming enzyme family protein
COORDINATES: protein motif:HMM:NF024675.2
GO:0016790 - thiolester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007694000.1
COORDINATES: similar to AA sequence:RefSeq:WP_006107363.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007274152.1
COORDINATES: similar to AA sequence:RefSeq:WP_008382896.1
COORDINATES: similar to AA sequence:RefSeq:WP_006088576.1
COORDINATES: protein motif:HMM:NF012686.2
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: similar to AA sequence:RefSeq:WP_008388731.1
cobalamin-independent methionine synthase II family protein