Halopiger xanaduensis SH-6 plasmid pHALXA01, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Halopiger.
Complete sequence of plasmid 1 of Halopiger xanaduensis SH-6
Submitted (03-JUN-2011) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP002840.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4091189\nSource DNA and organism available from Iain Anderson\n(ijanderson@lbl.gov)\nContacts: Iain Anderson (ijanderson@lbl.gov)\n Tanja Woyke (microbe@cuba.jgi-psf.org)\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Halopiger xanaduensis SH-6\ncollection_date :: Missing\nlat_lon :: 43.2 114.016\ndepth :: Missing\nalt_elev :: Missing\ncountry :: China\nenvironment :: Soil, Salinewater\nnum_replicons :: 4\nref_biomaterial :: DSM 18323\nbiotic_relationship :: Free living\ntrophic_level :: Missing\nrel_to_oxygen :: Missing\nisol_growth_condt :: 17625165\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3 (pre-release)\nfinishing_strategy :: Finished\nGOLD Stamp ID :: Gi05995\nType Strain :: Yes\nFunding Program :: DOE-CSP 2010\nIsolation Site :: Sediment of saline Lake Shangmatala in Inner\n Mongolia, China\nCell Shape :: Pleomorphic-shaped\nMotility :: Nonmotile\nTemperature Range :: Mesophile\nTemperature Optimum :: 37C\nSalinity :: Halophile\npH :: 7.5 - 8.0\nGram Staining :: Gram-\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Finished\nCurrent Finishing Status :: Finished\nAssembly Method :: Newbler v. 2.3\nGenome Coverage :: 30x\nSequencing Technology :: 454/Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/02/2023 02:17:40\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,320\nCDSs (total) :: 4,258\nGenes (coding) :: 4,198\nCDSs (with protein) :: 4,198\nGenes (RNA) :: 62\nrRNAs :: 4, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 3, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 2\nPseudo Genes (total) :: 60\nCDSs (without protein) :: 60\nPseudo Genes (ambiguous residues) :: 0 of 60\nPseudo Genes (frameshifted) :: 30 of 60\nPseudo Genes (incomplete) :: 36 of 60\nPseudo Genes (internal stop) :: 11 of 60\nPseudo Genes (multiple problems) :: 15 of 60\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_004594375.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012945131.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_015409529.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006432909.1
COORDINATES: similar to AA sequence:RefSeq:WP_014555959.1
COORDINATES: similar to AA sequence:RefSeq:WP_013875645.1
GO:0004803 - transposase activity [Evidence IEA]
IS5-like element ISHxa2 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_005534495.1
COORDINATES: similar to AA sequence:RefSeq:WP_006432970.1
COORDINATES: similar to AA sequence:RefSeq:WP_007141827.1
GO:0004729 - oxygen-dependent protoporphyrinogen oxidase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005580941.1
GO:0004325 - ferrochelatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007141829.1
GO:0004853 - uroporphyrinogen decarboxylase activity [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015322084.1
COORDINATES: similar to AA sequence:RefSeq:WP_008424673.1
COORDINATES: similar to AA sequence:RefSeq:WP_008846943.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016214.2
COORDINATES: protein motif:HMM:NF017239.2
COORDINATES: similar to AA sequence:RefSeq:WP_008846940.1
COORDINATES: similar to AA sequence:RefSeq:WP_008846939.1
GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006529 - asparagine biosynthetic process [Evidence IEA]
asparagine synthase (glutamine-hydrolyzing)
COORDINATES: protein motif:HMM:NF026257.2
COORDINATES: protein motif:HMM:NF015013.2
COORDINATES: protein motif:HMM:NF013080.2
GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024831.2
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013799.2
COORDINATES: similar to AA sequence:RefSeq:WP_004516122.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183584.1
COORDINATES: similar to AA sequence:RefSeq:WP_006055937.1
COORDINATES: similar to AA sequence:RefSeq:WP_007142805.1
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: protein motif:HMM:NF013543.2
COORDINATES: similar to AA sequence:RefSeq:WP_004050500.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012514.2
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007107757.1
COORDINATES: similar to AA sequence:RefSeq:WP_006650905.1
COORDINATES: similar to AA sequence:RefSeq:WP_008418340.1
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006181449.1
COORDINATES: similar to AA sequence:RefSeq:WP_007977623.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006106788.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009374986.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895767.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008895768.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008895772.1
COORDINATES: similar to AA sequence:RefSeq:WP_007187735.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895754.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007274249.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005536378.1
COORDINATES: similar to AA sequence:RefSeq:WP_006823938.1
COORDINATES: similar to AA sequence:RefSeq:WP_006107280.1
COORDINATES: similar to AA sequence:RefSeq:WP_006107283.1
COORDINATES: similar to AA sequence:RefSeq:WP_006886047.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006107288.1
COORDINATES: similar to AA sequence:RefSeq:WP_006107289.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006107290.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006667580.1
glycoside hydrolase family 3 N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006667814.1
COORDINATES: protein motif:HMM:NF014893.2
COORDINATES: similar to AA sequence:RefSeq:WP_008526100.1
COORDINATES: similar to AA sequence:RefSeq:WP_008097188.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825626.1
COORDINATES: similar to AA sequence:RefSeq:WP_013875773.1
COORDINATES: similar to AA sequence:RefSeq:WP_006886048.1
COORDINATES: similar to AA sequence:RefSeq:WP_006107109.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895693.1
COORDINATES: similar to AA sequence:RefSeq:WP_006882116.1
COORDINATES: similar to AA sequence:RefSeq:WP_004041059.1
COORDINATES: similar to AA sequence:RefSeq:WP_008006242.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012945500.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945491.1
GO:0009436 - glyoxylate catabolic process [Evidence IEA]; GO:0071704 - organic substance metabolic process [Evidence IEA]
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006825634.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895660.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945496.1
GO:0008869 - galactonate dehydratase activity [Evidence IEA]
GO:0009063 - amino acid catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006107120.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
LLM class flavin-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF024126.2
COORDINATES: similar to AA sequence:RefSeq:WP_008097146.1
COORDINATES: similar to AA sequence:RefSeq:WP_006433145.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825647.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895669.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825643.1
COORDINATES: similar to AA sequence:RefSeq:WP_008893605.1
GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020220710.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895661.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594390.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594389.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594387.1
COORDINATES: similar to AA sequence:RefSeq:WP_006107008.1
COORDINATES: similar to AA sequence:RefSeq:WP_008388578.1
COORDINATES: similar to AA sequence:RefSeq:WP_008389478.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006108106.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009377339.1
COORDINATES: similar to AA sequence:RefSeq:WP_004216322.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008586107.1
COORDINATES: protein motif:HMM:NF027245.2
bacterio-opsin activator domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006432972.1
COORDINATES: similar to AA sequence:RefSeq:WP_006181124.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006106828.1
daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006667733.1
COORDINATES: similar to AA sequence:RefSeq:WP_008611770.1
COORDINATES: similar to AA sequence:RefSeq:WP_008096852.1
COORDINATES: similar to AA sequence:RefSeq:WP_008424784.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004594503.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865246.1
COORDINATES: similar to AA sequence:RefSeq:WP_004967854.1
COORDINATES: similar to AA sequence:RefSeq:WP_008526039.1
COORDINATES: similar to AA sequence:RefSeq:WP_011321760.1
GO:0020037 - heme binding [Evidence IEA]; GO:0019825 - oxygen binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015764188.1
GO:0032559 - adenyl ribonucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006431920.1
heavy metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008005422.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004048645.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008420236.1
COORDINATES: similar to AA sequence:RefSeq:WP_008009229.1
GO:0004764 - shikimate 3-dehydrogenase (NADP+) activity [Evidence IEA]
GO:0009423 - chorismate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012945707.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945008.1
GO:0008927 - mannonate dehydratase activity [Evidence IEA]
GO:0006064 - glucuronate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008006305.1
COORDINATES: similar to AA sequence:RefSeq:WP_008006290.1
COORDINATES: similar to AA sequence:RefSeq:WP_008006289.1
COORDINATES: similar to AA sequence:RefSeq:WP_008006287.1
COORDINATES: similar to AA sequence:RefSeq:WP_008006286.1
COORDINATES: similar to AA sequence:RefSeq:WP_008006285.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892473.1
COORDINATES: protein motif:HMM:NF019911.2
COORDINATES: similar to AA sequence:RefSeq:WP_006825648.1
COORDINATES: similar to AA sequence:RefSeq:WP_008006235.1
COORDINATES: similar to AA sequence:RefSeq:WP_006885219.1
COORDINATES: similar to AA sequence:RefSeq:WP_012944980.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012944979.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008892457.1
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004041044.1
part of the rhamnose catabolism pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004594403.1
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008006246.1
COORDINATES: protein motif:HMM:NF016497.2
COORDINATES: similar to AA sequence:RefSeq:WP_015802253.1
COORDINATES: similar to AA sequence:RefSeq:WP_008006244.1
GO:0047487 - oligogalacturonide lyase activity [Evidence IEA]
GO:0045490 - pectin catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012945002.1
COORDINATES: similar to AA sequence:RefSeq:WP_008388588.1
GO:0004650 - polygalacturonase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012945001.1
family 78 glycoside hydrolase catalytic domain
COORDINATES: similar to AA sequence:RefSeq:WP_013879220.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008006277.1
COORDINATES: similar to AA sequence:RefSeq:WP_008607002.1
carbohydrate-binding family 9-like protein
COORDINATES: similar to AA sequence:RefSeq:WP_004061665.1
COORDINATES: similar to AA sequence:RefSeq:WP_008006221.1
glycoside hydrolase family 2 TIM barrel-domain containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011225022.1
GO:0008934 - inositol monophosphate 1-phosphatase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0006020 - inositol metabolic process [Evidence IEA]; GO:0046855 - inositol phosphate dephosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006667456.1
COORDINATES: similar to AA sequence:RefSeq:WP_013875802.1
energy-coupling factor transporter transmembrane component T
COORDINATES: similar to AA sequence:RefSeq:WP_014030959.1
COORDINATES: similar to AA sequence:RefSeq:WP_005538820.1
COORDINATES: similar to AA sequence:RefSeq:WP_007981289.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945790.1
COORDINATES: similar to AA sequence:RefSeq:WP_004977793.1
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: similar to AA sequence:RefSeq:WP_004976045.1
COORDINATES: protein motif:HMM:NF012706.2
COORDINATES: similar to AA sequence:RefSeq:WP_008527111.1
COORDINATES: similar to AA sequence:RefSeq:WP_015322344.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054524.1
GO:0000023 - maltose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006182342.1
GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
peptide-methionine (S)-S-oxide reductase
COORDINATES: protein motif:HMM:NF013989.2
GO:0008703 - 5-amino-6-(5-phosphoribosylamino)uracil reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007141572.1
COORDINATES: similar to AA sequence:RefSeq:WP_004515216.1
COORDINATES: similar to AA sequence:RefSeq:WP_015788794.1
COORDINATES: similar to AA sequence:RefSeq:WP_007188449.1
COORDINATES: similar to AA sequence:RefSeq:WP_006665758.1
YeeE/YedE thiosulfate transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006054636.1
COORDINATES: similar to AA sequence:RefSeq:WP_007980966.1
COORDINATES: similar to AA sequence:RefSeq:WP_007979199.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048321.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594988.1
COORDINATES: similar to AA sequence:RefSeq:WP_007979449.1
COORDINATES: similar to AA sequence:RefSeq:WP_008427275.1
right-handed parallel beta-helix repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008895725.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945534.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945525.1
GO:0046556 - alpha-L-arabinofuranosidase activity [Evidence IEA]
GO:0046373 - L-arabinose metabolic process [Evidence IEA]
alpha-L-arabinofuranosidase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012945521.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945520.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895709.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945518.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524920.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895706.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895705.1
COORDINATES: similar to AA sequence:RefSeq:WP_015788902.1
COORDINATES: similar to AA sequence:RefSeq:WP_009367566.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945547.1
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: similar to AA sequence:RefSeq:WP_008524941.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892498.1
COORDINATES: similar to AA sequence:RefSeq:WP_012944712.1
COORDINATES: similar to AA sequence:RefSeq:WP_008423419.1
COORDINATES: similar to AA sequence:RefSeq:WP_006186257.1
COORDINATES: similar to AA sequence:RefSeq:WP_004046268.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892372.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945337.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762213.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007189124.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143478.1
COORDINATES: similar to AA sequence:RefSeq:WP_012807450.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667436.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012942648.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014863202.1
GO:0005267 - potassium channel activity [Evidence IEA]
GO:0034220 - monoatomic ion transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012942767.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015499 - formate transmembrane transporter activity [Evidence IEA]
GO:0015724 - formate transport [Evidence IEA]
formate/nitrite transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006107297.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895078.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008895077.1
COORDINATES: similar to AA sequence:RefSeq:WP_006651210.1
GO:0016208 - AMP binding [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006107296.1
COORDINATES: similar to AA sequence:RefSeq:WP_008453932.1
COORDINATES: similar to AA sequence:RefSeq:WP_004057326.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: protein motif:HMM:NF024771.2
IclR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008453939.1
COORDINATES: similar to AA sequence:RefSeq:WP_014039418.1
COORDINATES: similar to AA sequence:RefSeq:WP_006650739.1
COORDINATES: similar to AA sequence:RefSeq:WP_008523888.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182822.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895869.1
COORDINATES: similar to AA sequence:RefSeq:WP_012941716.1
COORDINATES: similar to AA sequence:RefSeq:WP_004065353.1
COORDINATES: similar to AA sequence:RefSeq:WP_008424084.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187372.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182816.1
COORDINATES: similar to AA sequence:RefSeq:WP_008575138.1
COORDINATES: similar to AA sequence:RefSeq:WP_009487659.1
COORDINATES: similar to AA sequence:RefSeq:WP_012942766.1
GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016362.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013880757.1
COORDINATES: similar to AA sequence:RefSeq:WP_012996990.1
PQQ-binding-like beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_006183410.1
COORDINATES: similar to AA sequence:RefSeq:WP_012941264.1
COORDINATES: similar to AA sequence:RefSeq:WP_015319753.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008421961.1
COORDINATES: protein motif:HMM:NF025774.2
COORDINATES: similar to AA sequence:RefSeq:WP_007980765.1
phosphoenolpyruvate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014030968.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892585.1
Tm-1-like ATP-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008892356.1
COORDINATES: similar to AA sequence:RefSeq:WP_006671543.1
COORDINATES: similar to AA sequence:RefSeq:WP_006652247.1
COORDINATES: similar to AA sequence:RefSeq:WP_008385988.1
GO:0000166 - nucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006652811.1
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: protein motif:HMM:NF014533.2
COORDINATES: protein motif:HMM:NF017722.2
GO:0004062 - aryl sulfotransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015300177.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667205.1
COORDINATES: similar to AA sequence:RefSeq:WP_007142757.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667574.1
COORDINATES: similar to AA sequence:RefSeq:WP_006107484.1
GO:0018784 - (S)-2-haloacid dehalogenase activity [Evidence IEA]
GO:0006805 - xenobiotic metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014053212.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008524572.1
COORDINATES: similar to AA sequence:RefSeq:WP_005556743.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
FAD-binding and (Fe-S)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006090411.1
COORDINATES: similar to AA sequence:RefSeq:WP_006064626.1
GO:0004180 - carboxypeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006090409.1
GO:0004794 - L-threonine ammonia-lyase activity [Evidence IEA]
GO:0006549 - isoleucine metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015299719.1
COORDINATES: similar to AA sequence:RefSeq:WP_006651209.1
COORDINATES: similar to AA sequence:RefSeq:WP_012944069.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_006823964.1
GO:0071705 - nitrogen compound transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004214257.1
COORDINATES: similar to AA sequence:RefSeq:WP_008894148.1
COORDINATES: similar to AA sequence:RefSeq:WP_006064633.1
GO:0019239 - deaminase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012944064.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010546728.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016625 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor [Evidence IEA]
aldehyde ferredoxin oxidoreductase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006107175.1
COORDINATES: similar to AA sequence:RefSeq:WP_007742382.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035130.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004784 - superoxide dismutase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008896801.1
COORDINATES: similar to AA sequence:RefSeq:WP_004518184.1
COORDINATES: similar to AA sequence:RefSeq:WP_008385985.1
COORDINATES: similar to AA sequence:RefSeq:WP_004518182.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762187.1
COORDINATES: similar to AA sequence:RefSeq:WP_008443531.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222290.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008446344.1
COORDINATES: similar to AA sequence:RefSeq:WP_006167284.1
GO:0003746 - translation elongation factor activity [Evidence IEA]
GO:0006414 - translational elongation [Evidence IEA]
translation elongation factor EF-1 subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_006885444.1
COORDINATES: similar to AA sequence:RefSeq:WP_020221492.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762257.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006433251.1
COORDINATES: similar to AA sequence:RefSeq:WP_013875940.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0015740 - C4-dicarboxylate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006433247.1
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015299334.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111101.1
cobalamin-independent methionine synthase II family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007109529.1
GO:0042910 - xenobiotic transmembrane transporter activity [Evidence IEA]
GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006184199.1
COORDINATES: protein motif:HMM:NF036897.2
COORDINATES: similar to AA sequence:RefSeq:WP_006652796.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_008420219.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008425779.1
GO:0004181 - metallocarboxypeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014865869.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945603.1
COORDINATES: similar to AA sequence:RefSeq:WP_007697820.1
COORDINATES: similar to AA sequence:RefSeq:WP_006652880.1
COORDINATES: similar to AA sequence:RefSeq:WP_008444080.1
COORDINATES: similar to AA sequence:RefSeq:WP_006430942.1
COORDINATES: similar to AA sequence:RefSeq:WP_008894355.1
GO:0004497 - monooxygenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006430936.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090284.1
COORDINATES: similar to AA sequence:RefSeq:WP_008327182.1
COORDINATES: similar to AA sequence:RefSeq:WP_006092526.1
COORDINATES: similar to AA sequence:RefSeq:WP_006650265.1
COORDINATES: protein motif:HMM:NF028236.2
COORDINATES: similar to AA sequence:RefSeq:WP_006066903.1
COORDINATES: similar to AA sequence:RefSeq:WP_015301425.1
COORDINATES: similar to AA sequence:RefSeq:WP_006882387.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006882388.1
COORDINATES: similar to AA sequence:RefSeq:WP_006167690.1
GO:0004096 - catalase activity [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]
GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004050774.1
COORDINATES: similar to AA sequence:RefSeq:WP_014040526.1
glycoside hydrolase family 3 C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008416505.1
COORDINATES: similar to AA sequence:RefSeq:WP_013034932.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182271.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012945671.1
COORDINATES: similar to AA sequence:RefSeq:WP_007696247.1
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_007695045.1
COORDINATES: similar to AA sequence:RefSeq:WP_006432942.1
COORDINATES: protein motif:HMM:NF012371.2
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006183355.1
COORDINATES: similar to AA sequence:RefSeq:WP_007140250.1
COORDINATES: similar to AA sequence:RefSeq:WP_004051324.1
COORDINATES: similar to AA sequence:RefSeq:WP_008327227.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008006284.1
COORDINATES: similar to AA sequence:RefSeq:WP_009376000.1
Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain