Microtus ochrogaster isolate Prairie Vole_2 chromosome X, MicOch1.0, whole genome shotgun sequence.
type: Entry
definition: Microtus ochrogaster isolate Prairie Vole_2 chromosome X, MicOch1.0, whole genome shotgun sequence.
sequence version: NC_022026.1
sequence date: 2018-10-15
sequence: sequence
division: CON
label: NC_022026.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA210839
dblink: SAMN00727831
keyword: WGS
keyword: RefSeq
source: Microtus ochrogaster (prairie vole)
organism: Microtus ochrogaster
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Cricetidae; Arvicolinae; Microtus.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM001689.1.\nAssembly name: MicOch1.0\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Broad Institute on\n2012/12/07. The original whole-genome shotgun project has the\naccession AHZW00000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Broad Institute\nAssembly Method :: allpaths v. R41985 HAPLOIDIFY=True\n SPRS_WRITE_SEPS=True\nAssembly Name :: MicOch1.0\nGenome Coverage :: 94x\nSequencing Technology :: Illumina Hi-Seq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Microtus ochrogaster Annotation\n Release 102\nAnnotation Version :: 102\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.1\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 61813736
topology: linear
so has quality: SO_0000987
location: 1..61813736
location: region:1-61813736:1
RO_0002162: 79684

NC_022026
type: RefSeq
SIO_000068: refseq

PRJNA210839
type: BioProject
SIO_000068: bioproject

SAMN00727831
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:61813736:1
position: 61813736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-61813736:1:source
so part of: sequence
organism: Microtus ochrogaster
mol type: genomic DNA
isolate: Prairie Vole_2
chromosome: X
sex: female

79684
type: Taxonomy
SIO_000068: taxonomy

LOC101997564
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC101997564
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 81950..82995
location: region:81950-82995:1
so has part: feature:81950-82995:1:exon

101997564
type: Gene
SIO_000068: ncbigene

position:81950:1
position: 81950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:82995:1
position: 82995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:81950-82995:1:exon

LOC101997564
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC101997564
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC101997564
subclass of: SO_0000673
so part of: LOC101997564
location: 81950..82995
location: region:81950-82995:1
so has part: feature:81950-82995:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:81950-82995:1:exon

Znf280c
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: Znf280c
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 103660..159808
location: region:103660-159808:1
so has part: feature:103660-159808:1:exon
subclass of: SO_0000010

101997860
type: Gene
SIO_000068: ncbigene

position:103660:1
position: 103660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:159808:1
position: 159808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:103660-159808:1:exon

Znf280c
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Znf280c
product: zinc finger protein 280C, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_026784864.1
SIO_010081: Znf280c
subclass of: SO_0000673
so part of: Znf280c
location: join(103660..103733,105095..105159,111374..111543,118549..118614,118940..119073,122240..122345,126504..126671,126808..126917,131853..132073,137887..138044,138211..138311,138915..139061,144809..144940,149463..149767,150387..150524,153024..153086,157664..157782,157909..157945,158070..159808)
location: region:103660-159808:1
so has part: feature:103660-103733:1:exon
so has part: feature:105095-105159:1:exon
so has part: feature:111374-111543:1:exon
so has part: feature:118549-118614:1:exon
so has part: feature:118940-119073:1:exon
so has part: feature:122240-122345:1:exon
so has part: feature:126504-126671:1:exon
so has part: feature:126808-126917:1:exon
so has part: feature:131853-132073:1:exon
so has part: feature:137887-138044:1:exon
so has part: feature:138211-138311:1:exon
so has part: feature:138915-139061:1:exon
so has part: feature:144809-144940:1:exon
so has part: feature:149463-149767:1:exon
so has part: feature:150387-150524:1:exon
so has part: feature:153024-153086:1:exon
so has part: feature:157664-157782:1:exon
so has part: feature:157909-157945:1:exon
so has part: feature:158070-159808:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:103660-103733:1:exon

position:103733:1
position: 103733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:105095-105159:1:exon

position:105095:1
position: 105095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:105159:1
position: 105159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:111374-111543:1:exon

position:111374:1
position: 111374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:111543:1
position: 111543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:118549-118614:1:exon

position:118549:1
position: 118549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:118614:1
position: 118614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:118940-119073:1:exon

position:118940:1
position: 118940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:119073:1
position: 119073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:122240-122345:1:exon

position:122240:1
position: 122240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:122345:1
position: 122345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:126504-126671:1:exon

position:126504:1
position: 126504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:126671:1
position: 126671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:126808-126917:1:exon

position:126808:1
position: 126808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:126917:1
position: 126917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:131853-132073:1:exon

position:131853:1
position: 131853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:132073:1
position: 132073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:137887-138044:1:exon

position:137887:1
position: 137887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:138044:1
position: 138044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:138211-138311:1:exon

position:138211:1
position: 138211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:138311:1
position: 138311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:138915-139061:1:exon

position:138915:1
position: 138915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:139061:1
position: 139061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:144809-144940:1:exon

position:144809:1
position: 144809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:144940:1
position: 144940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:149463-149767:1:exon

position:149463:1
position: 149463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:149767:1
position: 149767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:150387-150524:1:exon

position:150387:1
position: 150387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:150524:1
position: 150524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:153024-153086:1:exon

position:153024:1
position: 153024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:153086:1
position: 153086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:157664-157782:1:exon

position:157664:1
position: 157664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:157782:1
position: 157782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:157909-157945:1:exon

position:157909:1
position: 157909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:157945:1
position: 157945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:158070-159808:1:exon

position:158070:1
position: 158070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Znf280c
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Znf280c
product: zinc finger protein 280C, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_026784866.1
SIO_010081: Znf280c
subclass of: SO_0000673
so part of: Znf280c
location: join(103681..103733,111374..111543,118549..118614,118940..119073,122240..122345,126504..126671,126808..126917,131853..132073,137887..138044,138211..138311,138915..139061,144809..144940,149463..149767,150387..150524,153024..153086,157664..157782,157909..157945,158070..159808)
location: region:103681-159808:1
so has part: feature:103681-103733:1:exon
so has part: feature:111374-111543:1:exon
so has part: feature:118549-118614:1:exon
so has part: feature:118940-119073:1:exon
so has part: feature:122240-122345:1:exon
so has part: feature:126504-126671:1:exon
so has part: feature:126808-126917:1:exon
so has part: feature:131853-132073:1:exon
so has part: feature:137887-138044:1:exon
so has part: feature:138211-138311:1:exon
so has part: feature:138915-139061:1:exon
so has part: feature:144809-144940:1:exon
so has part: feature:149463-149767:1:exon
so has part: feature:150387-150524:1:exon
so has part: feature:153024-153086:1:exon
so has part: feature:157664-157782:1:exon
so has part: feature:157909-157945:1:exon
so has part: feature:158070-159808:1:exon

position:103681:1
position: 103681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:103681-103733:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:111374-111543:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:118549-118614:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:118940-119073:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:122240-122345:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:126504-126671:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:126808-126917:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:131853-132073:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:137887-138044:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:138211-138311:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:138915-139061:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:144809-144940:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:149463-149767:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:150387-150524:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:153024-153086:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:157664-157782:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:157909-157945:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:158070-159808:1:exon

Znf280c
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Znf280c
product: zinc finger protein 280C, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_026784865.1
SIO_010081: Znf280c
subclass of: SO_0000673
so part of: Znf280c
location: join(104455..104654,105095..105159,111374..111543,118549..118614,118940..119073,122240..122345,126504..126671,126808..126917,131853..132073,137887..138044,138211..138311,138915..139061,144809..144940,149463..149767,150387..150524,153024..153086,157664..157782,157909..157945,158070..159808)
location: region:104455-159808:1
so has part: feature:104455-104654:1:exon
so has part: feature:105095-105159:1:exon
so has part: feature:111374-111543:1:exon
so has part: feature:118549-118614:1:exon
so has part: feature:118940-119073:1:exon
so has part: feature:122240-122345:1:exon
so has part: feature:126504-126671:1:exon
so has part: feature:126808-126917:1:exon
so has part: feature:131853-132073:1:exon
so has part: feature:137887-138044:1:exon
so has part: feature:138211-138311:1:exon
so has part: feature:138915-139061:1:exon
so has part: feature:144809-144940:1:exon
so has part: feature:149463-149767:1:exon
so has part: feature:150387-150524:1:exon
so has part: feature:153024-153086:1:exon
so has part: feature:157664-157782:1:exon
so has part: feature:157909-157945:1:exon
so has part: feature:158070-159808:1:exon

position:104455:1
position: 104455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:104455-104654:1:exon

position:104654:1
position: 104654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:105095-105159:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:111374-111543:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:118549-118614:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:118940-119073:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:122240-122345:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:126504-126671:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:126808-126917:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:131853-132073:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:137887-138044:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:138211-138311:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:138915-139061:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:144809-144940:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:149463-149767:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:150387-150524:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:153024-153086:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:157664-157782:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:157909-157945:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:158070-159808:1:exon

Znf280c
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Znf280c
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 280C
translation: MAELVMECEEEELEPWQQKVDEIQNKDDDDDDDDELIFVGEISSSKPAISNILNRCSPGSSSKGLKNYSLNPAISNIFRPANRHSKNPLHNPVAALPRFHPKSKSSENSGVQTVFKPSFSKTSSQDDPGASILQLDSTKDKPSYSILKRNTEGIEQTSLGLKHPSTSKLNSVNPKKPKTNESVSETNPSSSSSLNKSPSEASSQVVLSNENTSSIQAETGPPSLRSCPKCKVKFSFLDPLKCHMKRCCPDMINNFLETVKSEHSTTENKANIGSDKEKLIMLVSDFYYGRHEGAVEEDLKTYTTFKCFSCSKVLKNNIRFMNHMKHHLEHEKQNSESWESHTTCQHCYRQYPNPFQLQCHIESTHTPHDFSTICKICELSFETEHMLLQHMKDTHKPGEMPYICQVCQFRSSIFSDVETHFRSSHENTKNLLCPFCLKVSRMATPYMNHYMKHQNKGIYRCQKCRLQFLTCKEKTDHKLEHRTFIKPKGLEGLPPGTKVTIRASFGSAQSGSSSPPSSSIPSTSLQIAASESKSTTTKINTKVANKSKTTKCQAVLTATCEPNPSKPGTGATKSKAKSSSKQKKQRTRKNKFSIALKNLRCHQGIHTCIECHSKIKDFSNHFSTYINCDFCKYTTNCNKAFTNHMSSHSDHPSKQFYIFKKHSRALRGITLVCLKCDFLADTSGLDRMAKHLNQRKTHTCQVVIENVTERSLTSESTSDGLLK
SIO_010081: Znf280c
subclass of: SO_0000673
so part of: Znf280c
location: join(111393..111543,118549..118614,118940..119073,122240..122345,126504..126671,126808..126917,131853..132073,137887..138044,138211..138311,138915..139061,144809..144940,149463..149767,150387..150524,153024..153086,157664..157782,157909..157945,158070..158085)
location: region:111393-158085:1
so has part: feature:111393-111543:1:exon
so has part: feature:118549-118614:1:exon
so has part: feature:118940-119073:1:exon
so has part: feature:122240-122345:1:exon
so has part: feature:126504-126671:1:exon
so has part: feature:126808-126917:1:exon
so has part: feature:131853-132073:1:exon
so has part: feature:137887-138044:1:exon
so has part: feature:138211-138311:1:exon
so has part: feature:138915-139061:1:exon
so has part: feature:144809-144940:1:exon
so has part: feature:149463-149767:1:exon
so has part: feature:150387-150524:1:exon
so has part: feature:153024-153086:1:exon
so has part: feature:157664-157782:1:exon
so has part: feature:157909-157945:1:exon
so has part: feature:158070-158085:1:exon

XP_026640665.1
type: Protein
SIO_000068: ncbiprotein

position:111393:1
position: 111393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:158085:1
position: 158085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:111393-111543:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:118549-118614:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:118940-119073:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:122240-122345:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:126504-126671:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:126808-126917:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:131853-132073:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:137887-138044:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:138211-138311:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:138915-139061:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:144809-144940:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:149463-149767:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:150387-150524:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:153024-153086:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:157664-157782:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:157909-157945:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:158070-158085:1:exon

Znf280c
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Znf280c
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 280C
translation: MAELVMECEEEELEPWQQKVDEIQNKDDDDDDDDELIFVGEISSSKPAISNILNRCSPGSSSKGLKNYSLNPAISNIFRPANRHSKNPLHNPVAALPRFHPKSKSSENSGVQTVFKPSFSKTSSQDDPGASILQLDSTKDKPSYSILKRNTEGIEQTSLGLKHPSTSKLNSVNPKKPKTNESVSETNPSSSSSLNKSPSEASSQVVLSNENTSSIQAETGPPSLRSCPKCKVKFSFLDPLKCHMKRCCPDMINNFLETVKSEHSTTENKANIGSDKEKLIMLVSDFYYGRHEGAVEEDLKTYTTFKCFSCSKVLKNNIRFMNHMKHHLEHEKQNSESWESHTTCQHCYRQYPNPFQLQCHIESTHTPHDFSTICKICELSFETEHMLLQHMKDTHKPGEMPYICQVCQFRSSIFSDVETHFRSSHENTKNLLCPFCLKVSRMATPYMNHYMKHQNKGIYRCQKCRLQFLTCKEKTDHKLEHRTFIKPKGLEGLPPGTKVTIRASFGSAQSGSSSPPSSSIPSTSLQIAASESKSTTTKINTKVANKSKTTKCQAVLTATCEPNPSKPGTGATKSKAKSSSKQKKQRTRKNKFSIALKNLRCHQGIHTCIECHSKIKDFSNHFSTYINCDFCKYTTNCNKAFTNHMSSHSDHPSKQFYIFKKHSRALRGITLVCLKCDFLADTSGLDRMAKHLNQRKTHTCQVVIENVTERSLTSESTSDGLLK
SIO_010081: Znf280c
subclass of: SO_0000673
so part of: Znf280c
location: join(111393..111543,118549..118614,118940..119073,122240..122345,126504..126671,126808..126917,131853..132073,137887..138044,138211..138311,138915..139061,144809..144940,149463..149767,150387..150524,153024..153086,157664..157782,157909..157945,158070..158085)
location: region:111393-158085:1
so has part: feature:111393-111543:1:exon
so has part: feature:118549-118614:1:exon
so has part: feature:118940-119073:1:exon
so has part: feature:122240-122345:1:exon
so has part: feature:126504-126671:1:exon
so has part: feature:126808-126917:1:exon
so has part: feature:131853-132073:1:exon
so has part: feature:137887-138044:1:exon
so has part: feature:138211-138311:1:exon
so has part: feature:138915-139061:1:exon
so has part: feature:144809-144940:1:exon
so has part: feature:149463-149767:1:exon
so has part: feature:150387-150524:1:exon
so has part: feature:153024-153086:1:exon
so has part: feature:157664-157782:1:exon
so has part: feature:157909-157945:1:exon
so has part: feature:158070-158085:1:exon

XP_026640666.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:111393-111543:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:118549-118614:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:118940-119073:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:122240-122345:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:126504-126671:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:126808-126917:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:131853-132073:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:137887-138044:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:138211-138311:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:138915-139061:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:144809-144940:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:149463-149767:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:150387-150524:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:153024-153086:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:157664-157782:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:157909-157945:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:158070-158085:1:exon

Znf280c
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Znf280c
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 280C
translation: MAELVMECEEEELEPWQQKVDEIQNKDDDDDDDDELIFVGEISSSKPAISNILNRCSPGSSSKGLKNYSLNPAISNIFRPANRHSKNPLHNPVAALPRFHPKSKSSENSGVQTVFKPSFSKTSSQDDPGASILQLDSTKDKPSYSILKRNTEGIEQTSLGLKHPSTSKLNSVNPKKPKTNESVSETNPSSSSSLNKSPSEASSQVVLSNENTSSIQAETGPPSLRSCPKCKVKFSFLDPLKCHMKRCCPDMINNFLETVKSEHSTTENKANIGSDKEKLIMLVSDFYYGRHEGAVEEDLKTYTTFKCFSCSKVLKNNIRFMNHMKHHLEHEKQNSESWESHTTCQHCYRQYPNPFQLQCHIESTHTPHDFSTICKICELSFETEHMLLQHMKDTHKPGEMPYICQVCQFRSSIFSDVETHFRSSHENTKNLLCPFCLKVSRMATPYMNHYMKHQNKGIYRCQKCRLQFLTCKEKTDHKLEHRTFIKPKGLEGLPPGTKVTIRASFGSAQSGSSSPPSSSIPSTSLQIAASESKSTTTKINTKVANKSKTTKCQAVLTATCEPNPSKPGTGATKSKAKSSSKQKKQRTRKNKFSIALKNLRCHQGIHTCIECHSKIKDFSNHFSTYINCDFCKYTTNCNKAFTNHMSSHSDHPSKQFYIFKKHSRALRGITLVCLKCDFLADTSGLDRMAKHLNQRKTHTCQVVIENVTERSLTSESTSDGLLK
SIO_010081: Znf280c
subclass of: SO_0000673
so part of: Znf280c
location: join(111393..111543,118549..118614,118940..119073,122240..122345,126504..126671,126808..126917,131853..132073,137887..138044,138211..138311,138915..139061,144809..144940,149463..149767,150387..150524,153024..153086,157664..157782,157909..157945,158070..158085)
location: region:111393-158085:1
so has part: feature:111393-111543:1:exon
so has part: feature:118549-118614:1:exon
so has part: feature:118940-119073:1:exon
so has part: feature:122240-122345:1:exon
so has part: feature:126504-126671:1:exon
so has part: feature:126808-126917:1:exon
so has part: feature:131853-132073:1:exon
so has part: feature:137887-138044:1:exon
so has part: feature:138211-138311:1:exon
so has part: feature:138915-139061:1:exon
so has part: feature:144809-144940:1:exon
so has part: feature:149463-149767:1:exon
so has part: feature:150387-150524:1:exon
so has part: feature:153024-153086:1:exon
so has part: feature:157664-157782:1:exon
so has part: feature:157909-157945:1:exon
so has part: feature:158070-158085:1:exon

XP_026640667.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:111393-111543:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:118549-118614:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:118940-119073:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:122240-122345:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:126504-126671:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:126808-126917:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:131853-132073:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:137887-138044:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:138211-138311:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:138915-139061:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:144809-144940:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:149463-149767:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:150387-150524:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:153024-153086:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:157664-157782:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:157909-157945:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:158070-158085:1:exon

LOC106144072
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC106144072
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(145179..145660)
location: region:145179-145660:-1
so has part: feature:145179-145660:-1:exon

106144072
type: Gene
SIO_000068: ncbigene

position:145179:-1
position: 145179
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:145660:-1
position: 145660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:145179-145660:-1:exon

LOC106144072
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC106144072
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 58% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC106144072
subclass of: SO_0000673
so part of: LOC106144072
location: complement(145179..145660)
location: region:145179-145660:-1
so has part: feature:145179-145660:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:145179-145660:-1:exon

Rab33a
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: Rab33a
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(172492..187735)
location: region:172492-187735:-1
so has part: feature:172492-187735:-1:exon
subclass of: SO_0000010

101998154
type: Gene
SIO_000068: ncbigene

position:172492:-1
position: 172492
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:187735:-1
position: 187735
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:172492-187735:-1:exon

Rab33a
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Rab33a
product: RAB33A, member RAS oncogene family
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
transcript id: XM_005358397.2
SIO_010081: Rab33a
subclass of: SO_0000673
so part of: Rab33a
location: complement(join(172492..173068,187336..187735))
location: region:172492-187735:-1
so has part: feature:187336-187735:-1:exon
so has part: feature:172492-173068:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:187336-187735:-1:exon

position:187336:-1
position: 187336
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:172492-173068:-1:exon

position:173068:-1
position: 173068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Rab33a
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Rab33a
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ras-related protein Rab-33A
translation: MAQPILGHGSLQPASAAGLASLELDSSMDQYVQIRIFKIIVIGDSNVGKTCLTFRFCGGTFPEKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDLREQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIFMCLACRLKAQKSLLYRDAERQQGKVQKLEFPQEANSKASCPC
SIO_010081: Rab33a
subclass of: SO_0000673
so part of: Rab33a
location: complement(join(172613..173068,187336..187593))
location: region:172613-187593:-1
so has part: feature:187336-187593:-1:exon
so has part: feature:172613-173068:-1:exon

XP_005358454.1
type: Protein
SIO_000068: ncbiprotein

position:172613:-1
position: 172613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:187593:-1
position: 187593
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:187336-187593:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:172613-173068:-1:exon

Aifm1
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: Aifm1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 194471..241948
location: region:194471-241948:1
so has part: feature:194471-241948:1:exon
subclass of: SO_0000010

101998429
type: Gene
SIO_000068: ncbigene

position:194471:1
position: 194471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:241948:1
position: 241948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:194471-241948:1:exon

Aifm1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Aifm1
product: apoptosis inducing factor mitochondria associated 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
transcript id: XM_005358398.3
SIO_010081: Aifm1
subclass of: SO_0000673
so part of: Aifm1
location: join(194471..194729,208368..208510,215118..215217,216702..216826,216945..217075,219953..220043,227744..227828,228758..228834,229690..229798,231591..231698,232024..232112,232919..233059,235725..235867,238951..239075,241016..241212,241552..241948)
location: region:194471-241948:1
so has part: feature:194471-194729:1:exon
so has part: feature:208368-208510:1:exon
so has part: feature:215118-215217:1:exon
so has part: feature:216702-216826:1:exon
so has part: feature:216945-217075:1:exon
so has part: feature:219953-220043:1:exon
so has part: feature:227744-227828:1:exon
so has part: feature:228758-228834:1:exon
so has part: feature:229690-229798:1:exon
so has part: feature:231591-231698:1:exon
so has part: feature:232024-232112:1:exon
so has part: feature:232919-233059:1:exon
so has part: feature:235725-235867:1:exon
so has part: feature:238951-239075:1:exon
so has part: feature:241016-241212:1:exon
so has part: feature:241552-241948:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:194471-194729:1:exon

position:194729:1
position: 194729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:208368-208510:1:exon

position:208368:1
position: 208368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:208510:1
position: 208510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:215118-215217:1:exon

position:215118:1
position: 215118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:215217:1
position: 215217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:216702-216826:1:exon

position:216702:1
position: 216702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:216826:1
position: 216826
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:216945-217075:1:exon

position:216945:1
position: 216945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:217075:1
position: 217075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:219953-220043:1:exon

position:219953:1
position: 219953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:220043:1
position: 220043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:227744-227828:1:exon

position:227744:1
position: 227744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:227828:1
position: 227828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:228758-228834:1:exon

position:228758:1
position: 228758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:228834:1
position: 228834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:229690-229798:1:exon

position:229690:1
position: 229690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:229798:1
position: 229798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:231591-231698:1:exon

position:231591:1
position: 231591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:231698:1
position: 231698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:232024-232112:1:exon

position:232024:1
position: 232024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:232112:1
position: 232112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:232919-233059:1:exon

position:232919:1
position: 232919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:233059:1
position: 233059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:235725-235867:1:exon

position:235725:1
position: 235725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:235867:1
position: 235867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:238951-239075:1:exon

position:238951:1
position: 238951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:239075:1
position: 239075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:241016-241212:1:exon

position:241016:1
position: 241016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:241212:1
position: 241212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:241552-241948:1:exon

position:241552:1
position: 241552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Aifm1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Aifm1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: apoptosis-inducing factor 1, mitochondrial
translation: MFRCGGMAGAFKQKLVPLVRTVCVQRPRQKNMLPGNLFQRWCVPLELQMARQMASSGSSGGKIDNSVLVLIVGLSTIGAGAYAYKTIKEDQKRYNERMAGLGLTPEEKQRRADASAAEGGSSPQVKVPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRGNMVKLNDGSKITFEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRALEKISREVKSITVIGGGFLGSELACALGRKSQTSGIEVIQLFPEKGNMGKILPEYLSNWTMEKVKREGVKVMPNAIVQSVGVSGGKLLIKLKDGRKVETDHIVTAVGLEPNVELAKSGGLEIDSDFGGFRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEKSGTGIRSESETESEASEISIPPSTPAVPQAPVEGEDYGKGVIFYLRDKVVVGIVLWNVFNRMPIARKIIKDGEQHEDLNEVAKLFNIHED
SIO_010081: Aifm1
subclass of: SO_0000673
so part of: Aifm1
location: join(194627..194729,208368..208510,215118..215217,216702..216826,216945..217075,219953..220043,227744..227828,228758..228834,229690..229798,231591..231698,232024..232112,232919..233059,235725..235867,238951..239075,241016..241212,241552..241623)
location: region:194627-241623:1
so has part: feature:194627-194729:1:exon
so has part: feature:208368-208510:1:exon
so has part: feature:215118-215217:1:exon
so has part: feature:216702-216826:1:exon
so has part: feature:216945-217075:1:exon
so has part: feature:219953-220043:1:exon
so has part: feature:227744-227828:1:exon
so has part: feature:228758-228834:1:exon
so has part: feature:229690-229798:1:exon
so has part: feature:231591-231698:1:exon
so has part: feature:232024-232112:1:exon
so has part: feature:232919-233059:1:exon
so has part: feature:235725-235867:1:exon
so has part: feature:238951-239075:1:exon
so has part: feature:241016-241212:1:exon
so has part: feature:241552-241623:1:exon

XP_005358455.1
type: Protein
SIO_000068: ncbiprotein

position:194627:1
position: 194627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:241623:1
position: 241623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:194627-194729:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:208368-208510:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:215118-215217:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:216702-216826:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:216945-217075:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:219953-220043:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:227744-227828:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:228758-228834:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:229690-229798:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:231591-231698:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:232024-232112:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:232919-233059:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:235725-235867:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:238951-239075:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:241016-241212:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:241552-241623:1:exon

Elf4
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: Elf4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 260839..299237
location: region:260839-299237:1
so has part: feature:260839-299237:1:exon
subclass of: SO_0000010

101999174
type: Gene
SIO_000068: ncbigene

position:260839:1
position: 260839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:299237:1
position: 299237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:260839-299237:1:exon

Elf4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Elf4
product: E74 like ETS transcription factor 4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_026784711.1
SIO_010081: Elf4
subclass of: SO_0000673
so part of: Elf4
location: join(260839..260942,288744..289018,292226..292397,292730..292822,294050..294241,295135..295218,295304..295496,296067..296444,297809..299237)
location: region:260839-299237:1
so has part: feature:260839-260942:1:exon
so has part: feature:288744-289018:1:exon
so has part: feature:292226-292397:1:exon
so has part: feature:292730-292822:1:exon
so has part: feature:294050-294241:1:exon
so has part: feature:295135-295218:1:exon
so has part: feature:295304-295496:1:exon
so has part: feature:296067-296444:1:exon
so has part: feature:297809-299237:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:260839-260942:1:exon

position:260942:1
position: 260942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:288744-289018:1:exon

position:288744:1
position: 288744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:289018:1
position: 289018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:292226-292397:1:exon

position:292226:1
position: 292226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:292397:1
position: 292397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:292730-292822:1:exon

position:292730:1
position: 292730
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:292822:1
position: 292822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:294050-294241:1:exon

position:294050:1
position: 294050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:294241:1
position: 294241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:295135-295218:1:exon

position:295135:1
position: 295135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:295218:1
position: 295218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:295304-295496:1:exon

position:295304:1
position: 295304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:295496:1
position: 295496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:296067-296444:1:exon

position:296067:1
position: 296067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:296444:1
position: 296444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:297809-299237:1:exon

position:297809:1
position: 297809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Elf4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Elf4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ETS-related transcription factor Elf-4
translation: MAIALQPSDLVFEFASNGMDDIHQLEDPSVFPAVIVEQVPYPELLHLYSGLDLDDVHNGIIRDRTLCMTQDQILEGGILLADDNESTSQNVSSTEVLFNVESPNEVLDEKQIFSTPEILPDSDSVQAISLPNFLFSATEPEDPKKTSDTGDQKEQSLEERVSREESPKKIGKSRKRSRKTKNNRSTSPVTDPSIPIRKKSKDGKGSTIYLWEFLLALLQDRNTCPKYIKWTQREKGIFKLVDSKAVSKLWGKQKNKPDMNYETMGRALRYYYQRGILAKVEGQRLVYQFKEMPKDLVVIEDEEESTETPEAPPQASTSSTPSTSTIRRASSRVLTRTSPQDKDSTSWEKPKVHHTGLQPSASLELGLSVDEEVPTTSTMLVSPLQSQAKLTKTVSTSSVSSNIHLGVSPVGPGSTVTLQTIPLTTVLTNGPPASTTAPTQLVLQSVPQVSTFKDTFTLQASFPLNTSFQENQVATQGAPLILSGLPQLLAGANHPSNPVPSQVIGAGSAGPSSQPPGTVIAAFIRTSGGTSVPGVKEGPLRSPSYVQGVVTGPPVEGLLVPEETLRELLRDQAHLQPLQSPVLSRGSHNLSLVGNQTLSPPSRPTVGLTPVAELELSSGSGSMLVAEPSVTTSGSLLTTSPTPAPFSPFNPTSLIKMESPHDI
SIO_010081: Elf4
subclass of: SO_0000673
so part of: Elf4
location: join(288947..289018,292226..292397,292730..292822,294050..294241,295135..295218,295304..295496,296067..296444,297809..298616)
location: region:288947-298616:1
so has part: feature:288947-289018:1:exon
so has part: feature:292226-292397:1:exon
so has part: feature:292730-292822:1:exon
so has part: feature:294050-294241:1:exon
so has part: feature:295135-295218:1:exon
so has part: feature:295304-295496:1:exon
so has part: feature:296067-296444:1:exon
so has part: feature:297809-298616:1:exon

XP_026640512.1
type: Protein
SIO_000068: ncbiprotein

position:288947:1
position: 288947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:298616:1
position: 298616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:288947-289018:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:292226-292397:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:292730-292822:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:294050-294241:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:295135-295218:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:295304-295496:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:296067-296444:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:297809-298616:1:exon

Bcorl1
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: Bcorl1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(306072..374054)
location: region:306072-374054:-1
so has part: feature:306072-374054:-1:exon
subclass of: SO_0000010

101999444
type: Gene
SIO_000068: ncbigene

position:306072:-1
position: 306072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:374054:-1
position: 374054
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:306072-374054:-1:exon

Bcorl1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Bcorl1
product: BCL6 corepressor like 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_026784830.1
SIO_010081: Bcorl1
subclass of: SO_0000673
so part of: Bcorl1
location: complement(join(306072..307992,312153..312303,313420..313497,321840..321985,323135..323301,325364..325585,330436..330659,335254..335643,337752..337832,338862..339027,343127..346420,346658..346748,353393..353522,372626..372705,373977..374054))
location: region:306072-374054:-1
so has part: feature:373977-374054:-1:exon
so has part: feature:372626-372705:-1:exon
so has part: feature:353393-353522:-1:exon
so has part: feature:346658-346748:-1:exon
so has part: feature:343127-346420:-1:exon
so has part: feature:338862-339027:-1:exon
so has part: feature:337752-337832:-1:exon
so has part: feature:335254-335643:-1:exon
so has part: feature:330436-330659:-1:exon
so has part: feature:325364-325585:-1:exon
so has part: feature:323135-323301:-1:exon
so has part: feature:321840-321985:-1:exon
so has part: feature:313420-313497:-1:exon
so has part: feature:312153-312303:-1:exon
so has part: feature:306072-307992:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:373977-374054:-1:exon

position:373977:-1
position: 373977
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:372626-372705:-1:exon

position:372626:-1
position: 372626
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:372705:-1
position: 372705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:353393-353522:-1:exon

position:353393:-1
position: 353393
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:353522:-1
position: 353522
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:346658-346748:-1:exon

position:346658:-1
position: 346658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:346748:-1
position: 346748
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:343127-346420:-1:exon

position:343127:-1
position: 343127
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:346420:-1
position: 346420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:338862-339027:-1:exon

position:338862:-1
position: 338862
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:339027:-1
position: 339027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:337752-337832:-1:exon

position:337752:-1
position: 337752
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:337832:-1
position: 337832
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:335254-335643:-1:exon

position:335254:-1
position: 335254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:335643:-1
position: 335643
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:330436-330659:-1:exon

position:330436:-1
position: 330436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:330659:-1
position: 330659
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:325364-325585:-1:exon

position:325364:-1
position: 325364
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:325585:-1
position: 325585
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:323135-323301:-1:exon

position:323135:-1
position: 323135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:323301:-1
position: 323301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:321840-321985:-1:exon

position:321840:-1
position: 321840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:321985:-1
position: 321985
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:313420-313497:-1:exon

position:313420:-1
position: 313420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:313497:-1
position: 313497
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:312153-312303:-1:exon

position:312153:-1
position: 312153
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:312303:-1
position: 312303
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:306072-307992:-1:exon

position:307992:-1
position: 307992
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Bcorl1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Bcorl1
product: BCL6 corepressor like 1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_026784832.1
SIO_010081: Bcorl1
subclass of: SO_0000673
so part of: Bcorl1
location: complement(join(306072..307992,312153..312303,313420..313497,321840..321985,323135..323301,325364..325585,330436..330659,335254..335643,337752..337832,338862..339027,343127..346420,346658..346748,353393..353522,372626..372705,373643..373686))
location: region:306072-373686:-1
so has part: feature:373643-373686:-1:exon
so has part: feature:372626-372705:-1:exon
so has part: feature:353393-353522:-1:exon
so has part: feature:346658-346748:-1:exon
so has part: feature:343127-346420:-1:exon
so has part: feature:338862-339027:-1:exon
so has part: feature:337752-337832:-1:exon
so has part: feature:335254-335643:-1:exon
so has part: feature:330436-330659:-1:exon
so has part: feature:325364-325585:-1:exon
so has part: feature:323135-323301:-1:exon
so has part: feature:321840-321985:-1:exon
so has part: feature:313420-313497:-1:exon
so has part: feature:312153-312303:-1:exon
so has part: feature:306072-307992:-1:exon

position:373686:-1
position: 373686
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:373643-373686:-1:exon

position:373643:-1
position: 373643
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:372626-372705:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:353393-353522:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:346658-346748:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:343127-346420:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:338862-339027:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:337752-337832:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:335254-335643:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:330436-330659:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:325364-325585:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:323135-323301:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:321840-321985:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:313420-313497:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:312153-312303:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:306072-307992:-1:exon

Bcorl1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Bcorl1
product: BCL6 corepressor like 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_005358402.2
SIO_010081: Bcorl1
subclass of: SO_0000673
so part of: Bcorl1
location: complement(join(306072..307992,312153..312303,313420..313497,321840..321985,323135..323301,325364..325585,330436..330659,335254..335643,337752..337832,338862..339027,343127..346420,346658..346748,353393..353522,372626..372705,373250..373359))
location: region:306072-373359:-1
so has part: feature:373250-373359:-1:exon
so has part: feature:372626-372705:-1:exon
so has part: feature:353393-353522:-1:exon
so has part: feature:346658-346748:-1:exon
so has part: feature:343127-346420:-1:exon
so has part: feature:338862-339027:-1:exon
so has part: feature:337752-337832:-1:exon
so has part: feature:335254-335643:-1:exon
so has part: feature:330436-330659:-1:exon
so has part: feature:325364-325585:-1:exon
so has part: feature:323135-323301:-1:exon
so has part: feature:321840-321985:-1:exon
so has part: feature:313420-313497:-1:exon
so has part: feature:312153-312303:-1:exon
so has part: feature:306072-307992:-1:exon

position:373359:-1
position: 373359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:373250-373359:-1:exon

position:373250:-1
position: 373250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:372626-372705:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:353393-353522:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:346658-346748:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:343127-346420:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:338862-339027:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:337752-337832:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:335254-335643:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:330436-330659:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:325364-325585:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:323135-323301:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:321840-321985:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:313420-313497:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:312153-312303:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:306072-307992:-1:exon

Bcorl1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Bcorl1
product: BCL6 corepressor like 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_026784831.1
SIO_010081: Bcorl1
subclass of: SO_0000673
so part of: Bcorl1
location: complement(join(306072..307992,312153..312303,313420..313497,321840..321985,323135..323301,325364..325585,330436..330659,335254..335643,337752..337832,338862..339027,343127..346420,346658..346748,353393..353522,371569..371726))
location: region:306072-371726:-1
so has part: feature:371569-371726:-1:exon
so has part: feature:353393-353522:-1:exon
so has part: feature:346658-346748:-1:exon
so has part: feature:343127-346420:-1:exon
so has part: feature:338862-339027:-1:exon
so has part: feature:337752-337832:-1:exon
so has part: feature:335254-335643:-1:exon
so has part: feature:330436-330659:-1:exon
so has part: feature:325364-325585:-1:exon
so has part: feature:323135-323301:-1:exon
so has part: feature:321840-321985:-1:exon
so has part: feature:313420-313497:-1:exon
so has part: feature:312153-312303:-1:exon
so has part: feature:306072-307992:-1:exon

position:371726:-1
position: 371726
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:371569-371726:-1:exon

position:371569:-1
position: 371569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:353393-353522:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:346658-346748:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:343127-346420:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:338862-339027:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:337752-337832:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:335254-335643:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:330436-330659:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:325364-325585:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:323135-323301:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:321840-321985:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:313420-313497:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:312153-312303:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:306072-307992:-1:exon

Bcorl1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Bcorl1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: BCL-6 corepressor-like protein 1
translation: MISTAPLYSGVHNWTSSDRIRMCGLNEERRAPLSDEESTTGDCQHFGSQEFCVSSSFSKVELTAVGSGSNARGANPDGNTTEKLGHRSEDQPDDPQPKMDYVGNAGEAEGLLMPLSSPGDGLKLPTPDSTEASHSRANCSWTPLSTQMSKQVDCSPAGVKALDSRHSVGEKNTFIVATLGTGVPVEGTLPLVTTNFSQLPAPICPPAPGSASVTPSVPDPFQVPLSVPAPVPHSGLVPVQVATSASAPSPPLAPVPALAPAPPSVPTLISDSNPLSVSASVLVPVPATAPHSVPVPLSAPAPTPLTVSVSAPPLALIQAPVPPSAPTLVLASVPTPVLAPMPASTPPAAPAPPSVPMPTPTPSSGPPSTPTLIPAFAPTPVPAPTPAPIFTPAPTPMPAATPAAIPTSAPIPASFSLSRVCFPAAQAPAMQKVPLSFQPGTVLTPNQPLVYIPPPSCGQPLSVATLPTTLGVSSTLTLPVLPSYLQDRCLPGVLASPELRSYPYAFSVARPLASDSKLVSLEVNRLSCTSPSSSTNTQPAPDGVPGPLADTSLTTASAKVLPTSQPLLPAPSGNSVPPHPSKMPGGTEQQTEGTSVTFSPLKSPPQLEREMASPPECSEMPLDLSSKSNRQKLPLPNQRKTPPMPVLTPVHTSSKALLSTVLSRSQRTTQAAGSNVTSCLGSTSSPFVIFPEMVRNGDPSTWVKNSTALISTIPGTYVGVANPVPASLLLNKDPNLGLNRDPRHLPKQEPISIIDQGEPKSTGATCGKKGSQAGAEGQQSTVKSRYTPARIAPGLPGCQTKELSLWKPTGLANMYPRCSVNGKPTSTQVLPVGWSPYHQASLLSIGISSAGQLTPNQGVPIRPTSIVSEFSGVSSLGSNEAVHGLPEGQPRPGGPFASEQDAVTKNKTCRIAAKPYEEQVNPVLLTLSPQTGTLALSVQPSSGDIGVNQGPEESESHLCPDSTPKMEGPQAACGLKLAGDTKPKNQVLATYMSHELVLATPQNLCKMPELPLLPHDSHSKELVLDVVPSSKRGPSTDLSQLGSQVDLGRVKMEKVDGDVVFNLANCFRADGLPAVPQRGLAEARAKAGQTRVKRESVGVFTCKNSWQPDEETESLPPKKVKCNKEKETEQEPQQQQQPPPPPQPQDKPEVQSSLGSKCRKLPGDPQEPTKKSPRGASDSGKEHNGVRGKHKHLKPTKPESQPPGKRADGHEEGSLEKKAKSSFRDFIPVVLSTRTRSQSGSICSSFAGMADGDMGNQEVFPTEEEEEVAPTPAKRRKVRKTQRDTQYRSHHAQDKTLLSQGRRHLWRAREMPWRTEAARQMWDTNEEEDEDEEEGLVKRRKRRRQKSRKYQTGEYLTEQEEEHRRKGRADSKARKQKTSSQSSEHCLRNRNLLLSSKAQGISDSPNGFLPNNLEEPACLENSEKPSGKRKCKTKHMANVSEEARSKGRWSQQKTRSSKSPTPVKPTEPCTPSKYRSAGPEEASESPTGRQIPPEARRLIVNKNAGETLLQRAARLGYKDVVLYCLQKHSEDVNHRDNAGYTALHEACSRGWTDILNILLQHGANVNCSSQDGTRPVHDAVANDNLETIWLLLSYGADPTLATYSGQTAMKLASSDNMKRFLSDHLSDLQGRAEGDPRASWDFYSSSVLEKKDGFACDLLHNPPGSAEQGDDSEQDDFMFELSDKPLLPCYNLQVSVSRGPCNWFLFSDVLKRLKLSSRIFQARFPHLEVTTLPKAEFYRQVASSQLLTPAERPGSLEDRSPPGSSETVELVQYEPELLRLLGSEVEYQSWSS
SIO_010081: Bcorl1
subclass of: SO_0000673
so part of: Bcorl1
location: complement(join(307710..307992,312153..312303,313420..313497,321840..321985,323135..323301,325364..325585,330436..330659,335254..335643,337752..337832,338862..339027,343127..346420,346658..346748,353393..353478))
location: region:307710-353478:-1
so has part: feature:353393-353478:-1:exon
so has part: feature:346658-346748:-1:exon
so has part: feature:343127-346420:-1:exon
so has part: feature:338862-339027:-1:exon
so has part: feature:337752-337832:-1:exon
so has part: feature:335254-335643:-1:exon
so has part: feature:330436-330659:-1:exon
so has part: feature:325364-325585:-1:exon
so has part: feature:323135-323301:-1:exon
so has part: feature:321840-321985:-1:exon
so has part: feature:313420-313497:-1:exon
so has part: feature:312153-312303:-1:exon
so has part: feature:307710-307992:-1:exon

XP_026640631.1
type: Protein
SIO_000068: ncbiprotein

position:307710:-1
position: 307710
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:353478:-1
position: 353478
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:353393-353478:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:346658-346748:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:343127-346420:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:338862-339027:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:337752-337832:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:335254-335643:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:330436-330659:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:325364-325585:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:323135-323301:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:321840-321985:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:313420-313497:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:312153-312303:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:307710-307992:-1:exon

Bcorl1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Bcorl1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: BCL-6 corepressor-like protein 1
translation: MISTAPLYSGVHNWTSSDRIRMCGLNEERRAPLSDEESTTGDCQHFGSQEFCVSSSFSKVELTAVGSGSNARGANPDGNTTEKLGHRSEDQPDDPQPKMDYVGNAGEAEGLLMPLSSPGDGLKLPTPDSTEASHSRANCSWTPLSTQMSKQVDCSPAGVKALDSRHSVGEKNTFIVATLGTGVPVEGTLPLVTTNFSQLPAPICPPAPGSASVTPSVPDPFQVPLSVPAPVPHSGLVPVQVATSASAPSPPLAPVPALAPAPPSVPTLISDSNPLSVSASVLVPVPATAPHSVPVPLSAPAPTPLTVSVSAPPLALIQAPVPPSAPTLVLASVPTPVLAPMPASTPPAAPAPPSVPMPTPTPSSGPPSTPTLIPAFAPTPVPAPTPAPIFTPAPTPMPAATPAAIPTSAPIPASFSLSRVCFPAAQAPAMQKVPLSFQPGTVLTPNQPLVYIPPPSCGQPLSVATLPTTLGVSSTLTLPVLPSYLQDRCLPGVLASPELRSYPYAFSVARPLASDSKLVSLEVNRLSCTSPSSSTNTQPAPDGVPGPLADTSLTTASAKVLPTSQPLLPAPSGNSVPPHPSKMPGGTEQQTEGTSVTFSPLKSPPQLEREMASPPECSEMPLDLSSKSNRQKLPLPNQRKTPPMPVLTPVHTSSKALLSTVLSRSQRTTQAAGSNVTSCLGSTSSPFVIFPEMVRNGDPSTWVKNSTALISTIPGTYVGVANPVPASLLLNKDPNLGLNRDPRHLPKQEPISIIDQGEPKSTGATCGKKGSQAGAEGQQSTVKSRYTPARIAPGLPGCQTKELSLWKPTGLANMYPRCSVNGKPTSTQVLPVGWSPYHQASLLSIGISSAGQLTPNQGVPIRPTSIVSEFSGVSSLGSNEAVHGLPEGQPRPGGPFASEQDAVTKNKTCRIAAKPYEEQVNPVLLTLSPQTGTLALSVQPSSGDIGVNQGPEESESHLCPDSTPKMEGPQAACGLKLAGDTKPKNQVLATYMSHELVLATPQNLCKMPELPLLPHDSHSKELVLDVVPSSKRGPSTDLSQLGSQVDLGRVKMEKVDGDVVFNLANCFRADGLPAVPQRGLAEARAKAGQTRVKRESVGVFTCKNSWQPDEETESLPPKKVKCNKEKETEQEPQQQQQPPPPPQPQDKPEVQSSLGSKCRKLPGDPQEPTKKSPRGASDSGKEHNGVRGKHKHLKPTKPESQPPGKRADGHEEGSLEKKAKSSFRDFIPVVLSTRTRSQSGSICSSFAGMADGDMGNQEVFPTEEEEEVAPTPAKRRKVRKTQRDTQYRSHHAQDKTLLSQGRRHLWRAREMPWRTEAARQMWDTNEEEDEDEEEGLVKRRKRRRQKSRKYQTGEYLTEQEEEHRRKGRADSKARKQKTSSQSSEHCLRNRNLLLSSKAQGISDSPNGFLPNNLEEPACLENSEKPSGKRKCKTKHMANVSEEARSKGRWSQQKTRSSKSPTPVKPTEPCTPSKYRSAGPEEASESPTGRQIPPEARRLIVNKNAGETLLQRAARLGYKDVVLYCLQKHSEDVNHRDNAGYTALHEACSRGWTDILNILLQHGANVNCSSQDGTRPVHDAVANDNLETIWLLLSYGADPTLATYSGQTAMKLASSDNMKRFLSDHLSDLQGRAEGDPRASWDFYSSSVLEKKDGFACDLLHNPPGSAEQGDDSEQDDFMFELSDKPLLPCYNLQVSVSRGPCNWFLFSDVLKRLKLSSRIFQARFPHLEVTTLPKAEFYRQVASSQLLTPAERPGSLEDRSPPGSSETVELVQYEPELLRLLGSEVEYQSWSS
SIO_010081: Bcorl1
subclass of: SO_0000673
so part of: Bcorl1
location: complement(join(307710..307992,312153..312303,313420..313497,321840..321985,323135..323301,325364..325585,330436..330659,335254..335643,337752..337832,338862..339027,343127..346420,346658..346748,353393..353478))
location: region:307710-353478:-1
so has part: feature:353393-353478:-1:exon
so has part: feature:346658-346748:-1:exon
so has part: feature:343127-346420:-1:exon
so has part: feature:338862-339027:-1:exon
so has part: feature:337752-337832:-1:exon
so has part: feature:335254-335643:-1:exon
so has part: feature:330436-330659:-1:exon
so has part: feature:325364-325585:-1:exon
so has part: feature:323135-323301:-1:exon
so has part: feature:321840-321985:-1:exon
so has part: feature:313420-313497:-1:exon
so has part: feature:312153-312303:-1:exon
so has part: feature:307710-307992:-1:exon

XP_026640632.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:353393-353478:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:346658-346748:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:343127-346420:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:338862-339027:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:337752-337832:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:335254-335643:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:330436-330659:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:325364-325585:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:323135-323301:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:321840-321985:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:313420-313497:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:312153-312303:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:307710-307992:-1:exon

Bcorl1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Bcorl1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: BCL-6 corepressor-like protein 1
translation: MISTAPLYSGVHNWTSSDRIRMCGLNEERRAPLSDEESTTGDCQHFGSQEFCVSSSFSKVELTAVGSGSNARGANPDGNTTEKLGHRSEDQPDDPQPKMDYVGNAGEAEGLLMPLSSPGDGLKLPTPDSTEASHSRANCSWTPLSTQMSKQVDCSPAGVKALDSRHSVGEKNTFIVATLGTGVPVEGTLPLVTTNFSQLPAPICPPAPGSASVTPSVPDPFQVPLSVPAPVPHSGLVPVQVATSASAPSPPLAPVPALAPAPPSVPTLISDSNPLSVSASVLVPVPATAPHSVPVPLSAPAPTPLTVSVSAPPLALIQAPVPPSAPTLVLASVPTPVLAPMPASTPPAAPAPPSVPMPTPTPSSGPPSTPTLIPAFAPTPVPAPTPAPIFTPAPTPMPAATPAAIPTSAPIPASFSLSRVCFPAAQAPAMQKVPLSFQPGTVLTPNQPLVYIPPPSCGQPLSVATLPTTLGVSSTLTLPVLPSYLQDRCLPGVLASPELRSYPYAFSVARPLASDSKLVSLEVNRLSCTSPSSSTNTQPAPDGVPGPLADTSLTTASAKVLPTSQPLLPAPSGNSVPPHPSKMPGGTEQQTEGTSVTFSPLKSPPQLEREMASPPECSEMPLDLSSKSNRQKLPLPNQRKTPPMPVLTPVHTSSKALLSTVLSRSQRTTQAAGSNVTSCLGSTSSPFVIFPEMVRNGDPSTWVKNSTALISTIPGTYVGVANPVPASLLLNKDPNLGLNRDPRHLPKQEPISIIDQGEPKSTGATCGKKGSQAGAEGQQSTVKSRYTPARIAPGLPGCQTKELSLWKPTGLANMYPRCSVNGKPTSTQVLPVGWSPYHQASLLSIGISSAGQLTPNQGVPIRPTSIVSEFSGVSSLGSNEAVHGLPEGQPRPGGPFASEQDAVTKNKTCRIAAKPYEEQVNPVLLTLSPQTGTLALSVQPSSGDIGVNQGPEESESHLCPDSTPKMEGPQAACGLKLAGDTKPKNQVLATYMSHELVLATPQNLCKMPELPLLPHDSHSKELVLDVVPSSKRGPSTDLSQLGSQVDLGRVKMEKVDGDVVFNLANCFRADGLPAVPQRGLAEARAKAGQTRVKRESVGVFTCKNSWQPDEETESLPPKKVKCNKEKETEQEPQQQQQPPPPPQPQDKPEVQSSLGSKCRKLPGDPQEPTKKSPRGASDSGKEHNGVRGKHKHLKPTKPESQPPGKRADGHEEGSLEKKAKSSFRDFIPVVLSTRTRSQSGSICSSFAGMADGDMGNQEVFPTEEEEEVAPTPAKRRKVRKTQRDTQYRSHHAQDKTLLSQGRRHLWRAREMPWRTEAARQMWDTNEEEDEDEEEGLVKRRKRRRQKSRKYQTGEYLTEQEEEHRRKGRADSKARKQKTSSQSSEHCLRNRNLLLSSKAQGISDSPNGFLPNNLEEPACLENSEKPSGKRKCKTKHMANVSEEARSKGRWSQQKTRSSKSPTPVKPTEPCTPSKYRSAGPEEASESPTGRQIPPEARRLIVNKNAGETLLQRAARLGYKDVVLYCLQKHSEDVNHRDNAGYTALHEACSRGWTDILNILLQHGANVNCSSQDGTRPVHDAVANDNLETIWLLLSYGADPTLATYSGQTAMKLASSDNMKRFLSDHLSDLQGRAEGDPRASWDFYSSSVLEKKDGFACDLLHNPPGSAEQGDDSEQDDFMFELSDKPLLPCYNLQVSVSRGPCNWFLFSDVLKRLKLSSRIFQARFPHLEVTTLPKAEFYRQVASSQLLTPAERPGSLEDRSPPGSSETVELVQYEPELLRLLGSEVEYQSWSS
SIO_010081: Bcorl1
subclass of: SO_0000673
so part of: Bcorl1
location: complement(join(307710..307992,312153..312303,313420..313497,321840..321985,323135..323301,325364..325585,330436..330659,335254..335643,337752..337832,338862..339027,343127..346420,346658..346748,353393..353478))
location: region:307710-353478:-1
so has part: feature:353393-353478:-1:exon
so has part: feature:346658-346748:-1:exon
so has part: feature:343127-346420:-1:exon
so has part: feature:338862-339027:-1:exon
so has part: feature:337752-337832:-1:exon
so has part: feature:335254-335643:-1:exon
so has part: feature:330436-330659:-1:exon
so has part: feature:325364-325585:-1:exon
so has part: feature:323135-323301:-1:exon
so has part: feature:321840-321985:-1:exon
so has part: feature:313420-313497:-1:exon
so has part: feature:312153-312303:-1:exon
so has part: feature:307710-307992:-1:exon

XP_026640633.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:353393-353478:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:346658-346748:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:343127-346420:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:338862-339027:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:337752-337832:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:335254-335643:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:330436-330659:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:325364-325585:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:323135-323301:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:321840-321985:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:313420-313497:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:312153-312303:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:307710-307992:-1:exon

Bcorl1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Bcorl1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: BCL-6 corepressor-like protein 1
translation: MISTAPLYSGVHNWTSSDRIRMCGLNEERRAPLSDEESTTGDCQHFGSQEFCVSSSFSKVELTAVGSGSNARGANPDGNTTEKLGHRSEDQPDDPQPKMDYVGNAGEAEGLLMPLSSPGDGLKLPTPDSTEASHSRANCSWTPLSTQMSKQVDCSPAGVKALDSRHSVGEKNTFIVATLGTGVPVEGTLPLVTTNFSQLPAPICPPAPGSASVTPSVPDPFQVPLSVPAPVPHSGLVPVQVATSASAPSPPLAPVPALAPAPPSVPTLISDSNPLSVSASVLVPVPATAPHSVPVPLSAPAPTPLTVSVSAPPLALIQAPVPPSAPTLVLASVPTPVLAPMPASTPPAAPAPPSVPMPTPTPSSGPPSTPTLIPAFAPTPVPAPTPAPIFTPAPTPMPAATPAAIPTSAPIPASFSLSRVCFPAAQAPAMQKVPLSFQPGTVLTPNQPLVYIPPPSCGQPLSVATLPTTLGVSSTLTLPVLPSYLQDRCLPGVLASPELRSYPYAFSVARPLASDSKLVSLEVNRLSCTSPSSSTNTQPAPDGVPGPLADTSLTTASAKVLPTSQPLLPAPSGNSVPPHPSKMPGGTEQQTEGTSVTFSPLKSPPQLEREMASPPECSEMPLDLSSKSNRQKLPLPNQRKTPPMPVLTPVHTSSKALLSTVLSRSQRTTQAAGSNVTSCLGSTSSPFVIFPEMVRNGDPSTWVKNSTALISTIPGTYVGVANPVPASLLLNKDPNLGLNRDPRHLPKQEPISIIDQGEPKSTGATCGKKGSQAGAEGQQSTVKSRYTPARIAPGLPGCQTKELSLWKPTGLANMYPRCSVNGKPTSTQVLPVGWSPYHQASLLSIGISSAGQLTPNQGVPIRPTSIVSEFSGVSSLGSNEAVHGLPEGQPRPGGPFASEQDAVTKNKTCRIAAKPYEEQVNPVLLTLSPQTGTLALSVQPSSGDIGVNQGPEESESHLCPDSTPKMEGPQAACGLKLAGDTKPKNQVLATYMSHELVLATPQNLCKMPELPLLPHDSHSKELVLDVVPSSKRGPSTDLSQLGSQVDLGRVKMEKVDGDVVFNLANCFRADGLPAVPQRGLAEARAKAGQTRVKRESVGVFTCKNSWQPDEETESLPPKKVKCNKEKETEQEPQQQQQPPPPPQPQDKPEVQSSLGSKCRKLPGDPQEPTKKSPRGASDSGKEHNGVRGKHKHLKPTKPESQPPGKRADGHEEGSLEKKAKSSFRDFIPVVLSTRTRSQSGSICSSFAGMADGDMGNQEVFPTEEEEEVAPTPAKRRKVRKTQRDTQYRSHHAQDKTLLSQGRRHLWRAREMPWRTEAARQMWDTNEEEDEDEEEGLVKRRKRRRQKSRKYQTGEYLTEQEEEHRRKGRADSKARKQKTSSQSSEHCLRNRNLLLSSKAQGISDSPNGFLPNNLEEPACLENSEKPSGKRKCKTKHMANVSEEARSKGRWSQQKTRSSKSPTPVKPTEPCTPSKYRSAGPEEASESPTGRQIPPEARRLIVNKNAGETLLQRAARLGYKDVVLYCLQKHSEDVNHRDNAGYTALHEACSRGWTDILNILLQHGANVNCSSQDGTRPVHDAVANDNLETIWLLLSYGADPTLATYSGQTAMKLASSDNMKRFLSDHLSDLQGRAEGDPRASWDFYSSSVLEKKDGFACDLLHNPPGSAEQGDDSEQDDFMFELSDKPLLPCYNLQVSVSRGPCNWFLFSDVLKRLKLSSRIFQARFPHLEVTTLPKAEFYRQVASSQLLTPAERPGSLEDRSPPGSSETVELVQYEPELLRLLGSEVEYQSWSS
SIO_010081: Bcorl1
subclass of: SO_0000673
so part of: Bcorl1
location: complement(join(307710..307992,312153..312303,313420..313497,321840..321985,323135..323301,325364..325585,330436..330659,335254..335643,337752..337832,338862..339027,343127..346420,346658..346748,353393..353478))
location: region:307710-353478:-1
so has part: feature:353393-353478:-1:exon
so has part: feature:346658-346748:-1:exon
so has part: feature:343127-346420:-1:exon
so has part: feature:338862-339027:-1:exon
so has part: feature:337752-337832:-1:exon
so has part: feature:335254-335643:-1:exon
so has part: feature:330436-330659:-1:exon
so has part: feature:325364-325585:-1:exon
so has part: feature:323135-323301:-1:exon
so has part: feature:321840-321985:-1:exon
so has part: feature:313420-313497:-1:exon
so has part: feature:312153-312303:-1:exon
so has part: feature:307710-307992:-1:exon

XP_005358459.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:353393-353478:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:346658-346748:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:343127-346420:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:338862-339027:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:337752-337832:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:335254-335643:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:330436-330659:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:325364-325585:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:323135-323301:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:321840-321985:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:313420-313497:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:312153-312303:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:307710-307992:-1:exon

Utp14a
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: Utp14a
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(424497..448634)
location: region:424497-448634:-1
so has part: feature:424497-448634:-1:exon
subclass of: SO_0000010

101999718
type: Gene
SIO_000068: ncbigene

position:424497:-1
position: 424497
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:448634:-1
position: 448634
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:424497-448634:-1:exon

Utp14a
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Utp14a
product: UTP14A, small subunit processome component
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_005358403.3
SIO_010081: Utp14a
subclass of: SO_0000673
so part of: Utp14a
location: complement(join(424497..424900,427981..428080,428194..428387,429100..429494,430659..431037,432135..432212,432298..432421,432973..433067,433166..433285,439742..439897,440132..440274,444883..444947,446113..446183,447273..447348,448519..448634))
location: region:424497-448634:-1
so has part: feature:448519-448634:-1:exon
so has part: feature:447273-447348:-1:exon
so has part: feature:446113-446183:-1:exon
so has part: feature:444883-444947:-1:exon
so has part: feature:440132-440274:-1:exon
so has part: feature:439742-439897:-1:exon
so has part: feature:433166-433285:-1:exon
so has part: feature:432973-433067:-1:exon
so has part: feature:432298-432421:-1:exon
so has part: feature:432135-432212:-1:exon
so has part: feature:430659-431037:-1:exon
so has part: feature:429100-429494:-1:exon
so has part: feature:428194-428387:-1:exon
so has part: feature:427981-428080:-1:exon
so has part: feature:424497-424900:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:448519-448634:-1:exon

position:448519:-1
position: 448519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:447273-447348:-1:exon

position:447273:-1
position: 447273
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:447348:-1
position: 447348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:446113-446183:-1:exon

position:446113:-1
position: 446113
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:446183:-1
position: 446183
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:444883-444947:-1:exon

position:444883:-1
position: 444883
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:444947:-1
position: 444947
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:440132-440274:-1:exon

position:440132:-1
position: 440132
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:440274:-1
position: 440274
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:439742-439897:-1:exon

position:439742:-1
position: 439742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:439897:-1
position: 439897
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:433166-433285:-1:exon

position:433166:-1
position: 433166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:433285:-1
position: 433285
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:432973-433067:-1:exon

position:432973:-1
position: 432973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:433067:-1
position: 433067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:432298-432421:-1:exon

position:432298:-1
position: 432298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:432421:-1
position: 432421
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:432135-432212:-1:exon

position:432135:-1
position: 432135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:432212:-1
position: 432212
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:430659-431037:-1:exon

position:430659:-1
position: 430659
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:431037:-1
position: 431037
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:429100-429494:-1:exon

position:429100:-1
position: 429100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:429494:-1
position: 429494
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:428194-428387:-1:exon

position:428194:-1
position: 428194
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:428387:-1
position: 428387
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:427981-428080:-1:exon

position:427981:-1
position: 427981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:428080:-1
position: 428080
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:424497-424900:-1:exon

position:424900:-1
position: 424900
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Utp14a
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Utp14a
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: U3 small nucleolar RNA-associated protein 14 homolog A
translation: MHATKAAKGLLALSQQEELVDLPTNYPLSASEDEGDGDGERKHQKLLEAIGSLSGKNRWKSAERSEASLKVSEFNVSSEGSGEKLALSDLLEPVKPSSSLTAVKKQLSRVKSKKTLDLPLNKGEVERIHREVAFSKTSQILSKWDSVVQKNREAEQLVFPLEKEPASFAPIEQVFLDWKARTPLEQEVFNLLHKNKQPVTDPLLTPVEKASLRAMSLEEAKIRRAELQRARALQSYYEARARRMKKIKSKKYHKIVKKGKAKKAIKDFEQLRKVDPNAALEELEKIEKARMMERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLAKNKELTQKLQVVSESEEEGGAEEEETLVPDAVNEAQMNADGPNPWMLRTCNRDAQEDEVQADSNELPEPVAHEFSENEGNEKPEAEEDVLLKEFEERRSLRKRSKLNQDAKPAGGQDSATKEVLSELKALSQKLSKDNRLSKKPKESPAKTVLLVQDEEPAPEEEEPLLLQRPERVQTLEELEELGKHDCLPNKELPGAAVEGEQVRRNPQEKLKGKKKEQMISLQKLLTTRTPSVTSVAVPTTVEEQEDEGERDQKQMIKEAFAGDDVIKEFLKEKRETIQANKPKDLDLTLPGWGEWGGMDLKPSAKKRRRFLIKAPEGPPRKDRNLPNVIINEKRNIYAAAHQVRVLPYPFTHHQQFERTIQNPIGSTWNTQRAFQKLTAPKVVTKAGHIIKPIKAEDVGYQSSPKSDLSVMQSNPKRRSKHQKQLKSSID
SIO_010081: Utp14a
subclass of: SO_0000673
so part of: Utp14a
location: complement(join(424634..424900,427981..428080,428194..428387,429100..429494,430659..431037,432135..432212,432298..432421,432973..433067,433166..433285,439742..439897,440132..440274,444883..444947,446113..446183,447273..447348,448519..448544))
location: region:424634-448544:-1
so has part: feature:448519-448544:-1:exon
so has part: feature:447273-447348:-1:exon
so has part: feature:446113-446183:-1:exon
so has part: feature:444883-444947:-1:exon
so has part: feature:440132-440274:-1:exon
so has part: feature:439742-439897:-1:exon
so has part: feature:433166-433285:-1:exon
so has part: feature:432973-433067:-1:exon
so has part: feature:432298-432421:-1:exon
so has part: feature:432135-432212:-1:exon
so has part: feature:430659-431037:-1:exon
so has part: feature:429100-429494:-1:exon
so has part: feature:428194-428387:-1:exon
so has part: feature:427981-428080:-1:exon
so has part: feature:424634-424900:-1:exon

XP_005358460.1
type: Protein
SIO_000068: ncbiprotein

position:424634:-1
position: 424634
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:448544:-1
position: 448544
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:448519-448544:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:447273-447348:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:446113-446183:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:444883-444947:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:440132-440274:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:439742-439897:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:433166-433285:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:432973-433067:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:432298-432421:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:432135-432212:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:430659-431037:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:429100-429494:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:428194-428387:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:427981-428080:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:424634-424900:-1:exon

LOC113457454
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC113457454
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(476055..476216)
location: region:476055-476216:-1
so has part: feature:476055-476216:-1:exon
subclass of: SO_0000623

113457454
type: Gene
SIO_000068: ncbigene

position:476055:-1
position: 476055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:476216:-1
position: 476216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:476055-476216:-1:exon

LOC113457454
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 79684
nc RNA class: snRNA
gene: LOC113457454
product: U1 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00003
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_003378022.1
SIO_010081: LOC113457454
subclass of: SO_0000673
so part of: LOC113457454
location: complement(476055..476216)
location: region:476055-476216:-1
so has part: feature:476055-476216:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:476055-476216:-1:exon

Zdhhc9
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: Zdhhc9
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 498490..534001
location: region:498490-534001:1
so has part: feature:498490-534001:1:exon
subclass of: SO_0000010

101999989
type: Gene
SIO_000068: ncbigene

position:498490:1
position: 498490
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:534001:1
position: 534001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:498490-534001:1:exon

Zdhhc9
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Zdhhc9
product: zinc finger DHHC-type containing 9, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
transcript id: XM_005358404.2
SIO_010081: Zdhhc9
subclass of: SO_0000673
so part of: Zdhhc9
location: join(498490..498694,500329..500617,512372..512532,516480..516638,523836..523973,524823..524871,525616..525718,527613..527716,528086..528182,532411..534001)
location: region:498490-534001:1
so has part: feature:498490-498694:1:exon
so has part: feature:500329-500617:1:exon
so has part: feature:512372-512532:1:exon
so has part: feature:516480-516638:1:exon
so has part: feature:523836-523973:1:exon
so has part: feature:524823-524871:1:exon
so has part: feature:525616-525718:1:exon
so has part: feature:527613-527716:1:exon
so has part: feature:528086-528182:1:exon
so has part: feature:532411-534001:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:498490-498694:1:exon

position:498694:1
position: 498694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:500329-500617:1:exon

position:500329:1
position: 500329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:500617:1
position: 500617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:512372-512532:1:exon

position:512372:1
position: 512372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:512532:1
position: 512532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:516480-516638:1:exon

position:516480:1
position: 516480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:516638:1
position: 516638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:523836-523973:1:exon

position:523836:1
position: 523836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:523973:1
position: 523973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:524823-524871:1:exon

position:524823:1
position: 524823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:524871:1
position: 524871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:525616-525718:1:exon

position:525616:1
position: 525616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:525718:1
position: 525718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:527613-527716:1:exon

position:527613:1
position: 527613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:527716:1
position: 527716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:528086-528182:1:exon

position:528086:1
position: 528086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:528182:1
position: 528182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:532411-534001:1:exon

position:532411:1
position: 532411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Zdhhc9
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Zdhhc9
product: zinc finger DHHC-type containing 9, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_026784888.1
SIO_010081: Zdhhc9
subclass of: SO_0000673
so part of: Zdhhc9
location: join(498514..498694,499070..499134,500329..500617,512372..512532,516480..516638,523836..523973,524823..524871,525616..525718,527613..527716,528086..528182,532411..534001)
location: region:498514-534001:1
so has part: feature:498514-498694:1:exon
so has part: feature:499070-499134:1:exon
so has part: feature:500329-500617:1:exon
so has part: feature:512372-512532:1:exon
so has part: feature:516480-516638:1:exon
so has part: feature:523836-523973:1:exon
so has part: feature:524823-524871:1:exon
so has part: feature:525616-525718:1:exon
so has part: feature:527613-527716:1:exon
so has part: feature:528086-528182:1:exon
so has part: feature:532411-534001:1:exon

position:498514:1
position: 498514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:498514-498694:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:499070-499134:1:exon

position:499070:1
position: 499070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:499134:1
position: 499134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:500329-500617:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:512372-512532:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:516480-516638:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:523836-523973:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:524823-524871:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:525616-525718:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:527613-527716:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:528086-528182:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:532411-534001:1:exon

Zdhhc9
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Zdhhc9
product: zinc finger DHHC-type containing 9, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_013350468.2
SIO_010081: Zdhhc9
subclass of: SO_0000673
so part of: Zdhhc9
location: join(498514..498694,500418..500617,512372..512532,516480..516638,523836..523973,524823..524871,525616..525718,527613..527716,528086..528182,532411..534001)
location: region:498514-534001:1
so has part: feature:498514-498694:1:exon
so has part: feature:500418-500617:1:exon
so has part: feature:512372-512532:1:exon
so has part: feature:516480-516638:1:exon
so has part: feature:523836-523973:1:exon
so has part: feature:524823-524871:1:exon
so has part: feature:525616-525718:1:exon
so has part: feature:527613-527716:1:exon
so has part: feature:528086-528182:1:exon
so has part: feature:532411-534001:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:498514-498694:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:500418-500617:1:exon

position:500418:1
position: 500418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:512372-512532:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:516480-516638:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:523836-523973:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:524823-524871:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:525616-525718:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:527613-527716:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:528086-528182:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:532411-534001:1:exon

Zdhhc9
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Zdhhc9
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: palmitoyltransferase ZDHHC9
translation: MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYLAVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQRPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRYFYLFILSLSLLTIYVFAFNIVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWSVVGLTGFHTFLVALNQTTNEDIKGSWTGKNRVQNPYSHGNIVKNCCEVLCGPLPPSVLDRRGILPLEENGSRPPSTQETSSSLLPQSPASTEHMNSNEMPEDSTTPEEMPPPEPPEPPQEATEAEK
SIO_010081: Zdhhc9
subclass of: SO_0000673
so part of: Zdhhc9
location: join(500451..500617,512372..512532,516480..516638,523836..523973,524823..524871,525616..525718,527613..527716,528086..528182,532411..532527)
location: region:500451-532527:1
so has part: feature:500451-500617:1:exon
so has part: feature:512372-512532:1:exon
so has part: feature:516480-516638:1:exon
so has part: feature:523836-523973:1:exon
so has part: feature:524823-524871:1:exon
so has part: feature:525616-525718:1:exon
so has part: feature:527613-527716:1:exon
so has part: feature:528086-528182:1:exon
so has part: feature:532411-532527:1:exon

XP_026640689.1
type: Protein
SIO_000068: ncbiprotein

position:500451:1
position: 500451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:532527:1
position: 532527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:500451-500617:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:512372-512532:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:516480-516638:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:523836-523973:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:524823-524871:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:525616-525718:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:527613-527716:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:528086-528182:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:532411-532527:1:exon

Zdhhc9
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Zdhhc9
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: palmitoyltransferase ZDHHC9
translation: MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYLAVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQRPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRYFYLFILSLSLLTIYVFAFNIVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWSVVGLTGFHTFLVALNQTTNEDIKGSWTGKNRVQNPYSHGNIVKNCCEVLCGPLPPSVLDRRGILPLEENGSRPPSTQETSSSLLPQSPASTEHMNSNEMPEDSTTPEEMPPPEPPEPPQEATEAEK
SIO_010081: Zdhhc9
subclass of: SO_0000673
so part of: Zdhhc9
location: join(500451..500617,512372..512532,516480..516638,523836..523973,524823..524871,525616..525718,527613..527716,528086..528182,532411..532527)
location: region:500451-532527:1
so has part: feature:500451-500617:1:exon
so has part: feature:512372-512532:1:exon
so has part: feature:516480-516638:1:exon
so has part: feature:523836-523973:1:exon
so has part: feature:524823-524871:1:exon
so has part: feature:525616-525718:1:exon
so has part: feature:527613-527716:1:exon
so has part: feature:528086-528182:1:exon
so has part: feature:532411-532527:1:exon

XP_005358461.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:500451-500617:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:512372-512532:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:516480-516638:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:523836-523973:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:524823-524871:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:525616-525718:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:527613-527716:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:528086-528182:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:532411-532527:1:exon

Zdhhc9
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Zdhhc9
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: palmitoyltransferase ZDHHC9
translation: MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYLAVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQRPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRYFYLFILSLSLLTIYVFAFNIVYVALKSLKIGFLETLKETPGTVLEVLICFFTLWSVVGLTGFHTFLVALNQTTNEDIKGSWTGKNRVQNPYSHGNIVKNCCEVLCGPLPPSVLDRRGILPLEENGSRPPSTQETSSSLLPQSPASTEHMNSNEMPEDSTTPEEMPPPEPPEPPQEATEAEK
SIO_010081: Zdhhc9
subclass of: SO_0000673
so part of: Zdhhc9
location: join(500451..500617,512372..512532,516480..516638,523836..523973,524823..524871,525616..525718,527613..527716,528086..528182,532411..532527)
location: region:500451-532527:1
so has part: feature:500451-500617:1:exon
so has part: feature:512372-512532:1:exon
so has part: feature:516480-516638:1:exon
so has part: feature:523836-523973:1:exon
so has part: feature:524823-524871:1:exon
so has part: feature:525616-525718:1:exon
so has part: feature:527613-527716:1:exon
so has part: feature:528086-528182:1:exon
so has part: feature:532411-532527:1:exon

XP_013205922.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:500451-500617:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:512372-512532:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:516480-516638:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:523836-523973:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:524823-524871:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:525616-525718:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:527613-527716:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:528086-528182:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:532411-532527:1:exon

Sash3
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: Sash3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(542105..556541)
location: region:542105-556541:-1
so has part: feature:542105-556541:-1:exon
subclass of: SO_0000010

102000267
type: Gene
SIO_000068: ncbigene

position:542105:-1
position: 542105
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:556541:-1
position: 556541
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:542105-556541:-1:exon

Sash3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Sash3
product: SAM and SH3 domain containing 3, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_005358405.3
SIO_010081: Sash3
subclass of: SO_0000673
so part of: Sash3
location: complement(join(542105..543565,544098..544248,544403..544612,544754..544902,546009..546150,548803..548949,549316..549411,556368..556541))
location: region:542105-556541:-1
so has part: feature:556368-556541:-1:exon
so has part: feature:549316-549411:-1:exon
so has part: feature:548803-548949:-1:exon
so has part: feature:546009-546150:-1:exon
so has part: feature:544754-544902:-1:exon
so has part: feature:544403-544612:-1:exon
so has part: feature:544098-544248:-1:exon
so has part: feature:542105-543565:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:556368-556541:-1:exon

position:556368:-1
position: 556368
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:549316-549411:-1:exon

position:549316:-1
position: 549316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:549411:-1
position: 549411
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:548803-548949:-1:exon

position:548803:-1
position: 548803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:548949:-1
position: 548949
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:546009-546150:-1:exon

position:546009:-1
position: 546009
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:546150:-1
position: 546150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:544754-544902:-1:exon

position:544754:-1
position: 544754
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:544902:-1
position: 544902
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:544403-544612:-1:exon

position:544403:-1
position: 544403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:544612:-1
position: 544612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:544098-544248:-1:exon

position:544098:-1
position: 544098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:544248:-1
position: 544248
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:542105-543565:-1:exon

position:543565:-1
position: 543565
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Sash3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Sash3
product: SAM and SH3 domain containing 3, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_026784869.1
SIO_010081: Sash3
subclass of: SO_0000673
so part of: Sash3
location: complement(join(542105..543568,544098..544248,544403..544612,544754..544902,546009..546150,548803..548949,549316..549411,556368..556541))
location: region:542105-556541:-1
so has part: feature:556368-556541:-1:exon
so has part: feature:549316-549411:-1:exon
so has part: feature:548803-548949:-1:exon
so has part: feature:546009-546150:-1:exon
so has part: feature:544754-544902:-1:exon
so has part: feature:544403-544612:-1:exon
so has part: feature:544098-544248:-1:exon
so has part: feature:542105-543568:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:556368-556541:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:549316-549411:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:548803-548949:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:546009-546150:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:544754-544902:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:544403-544612:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:544098-544248:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:542105-543568:-1:exon

position:543568:-1
position: 543568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Sash3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Sash3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SAM and SH3 domain-containing protein 3 isoform X2
translation: MLRRKPSNASDKEPTQKKKLSLQRSSSFKDFAKSKPSSPVVSEKEFNLDDNIPEDDSGVLTPEDSGKSGKKLGKKWRAVISRTMNRKMGKMMVKALSEEMGDTLEEGSASPTSPDCSLDSPGPEKMGLAFSEQEERELPALSRQTSTGSELCSPGPGSGSFMEESPAPPYMGPFCGRARVHTDFTPSPYDHDSLKLQKGDVIQIIEKPPVGTWLGLLNGKLGSFKFIYVDVLPEEAVGPVRPSRRQSKGKRPKPKTLHELLERIGLEEHTSTLLLNGYQTLEDFKELRETHLNELNIVDPQHRAKLLTAAELLLDYDTGSEEAEEGAESSQEPVLHTVSEPKVDIPRDSGCFEGSESGRDEAELAGTEEQLQGLSLAGAP
SIO_010081: Sash3
subclass of: SO_0000673
so part of: Sash3
location: complement(join(543375..543565,544098..544248,544403..544612,544754..544902,546009..546150,548803..548949,549316..549411,556368..556424))
location: region:543375-556424:-1
so has part: feature:556368-556424:-1:exon
so has part: feature:549316-549411:-1:exon
so has part: feature:548803-548949:-1:exon
so has part: feature:546009-546150:-1:exon
so has part: feature:544754-544902:-1:exon
so has part: feature:544403-544612:-1:exon
so has part: feature:544098-544248:-1:exon
so has part: feature:543375-543565:-1:exon

XP_005358462.1
type: Protein
SIO_000068: ncbiprotein

position:543375:-1
position: 543375
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:556424:-1
position: 556424
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:556368-556424:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:549316-549411:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:548803-548949:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:546009-546150:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:544754-544902:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:544403-544612:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:544098-544248:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:543375-543565:-1:exon

Sash3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Sash3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SAM and SH3 domain-containing protein 3 isoform X1
translation: MLRRKPSNASDKEPTQKKKLSLQRSSSFKDFAKSKPSSPVVSEKEFNLDDNIPEDDSGVLTPEDSGKSGKKLGKKWRAVISRTMNRKMGKMMVKALSEEMGDTLEEGSASPTSPDCSLDSPGPEKMGLAFSEQEERELPALSRQTSTGSELCSPGPGSGSFMEESPAPPYMGPFCGRARVHTDFTPSPYDHDSLKLQKGDVIQIIEKPPVGTWLGLLNGKLGSFKFIYVDVLPEEAVGPVRPSRRQSKGKRPKPKTLHELLERIGLEEHTSTLLLNGYQTLEDFKELRETHLNELNIVDPQHRAKLLTAAELLLDYDTAGSEEAEEGAESSQEPVLHTVSEPKVDIPRDSGCFEGSESGRDEAELAGTEEQLQGLSLAGAP
SIO_010081: Sash3
subclass of: SO_0000673
so part of: Sash3
location: complement(join(543375..543568,544098..544248,544403..544612,544754..544902,546009..546150,548803..548949,549316..549411,556368..556424))
location: region:543375-556424:-1
so has part: feature:556368-556424:-1:exon
so has part: feature:549316-549411:-1:exon
so has part: feature:548803-548949:-1:exon
so has part: feature:546009-546150:-1:exon
so has part: feature:544754-544902:-1:exon
so has part: feature:544403-544612:-1:exon
so has part: feature:544098-544248:-1:exon
so has part: feature:543375-543568:-1:exon

XP_026640670.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:556368-556424:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:549316-549411:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:548803-548949:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:546009-546150:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:544754-544902:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:544403-544612:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:544098-544248:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:543375-543568:-1:exon

Xpnpep2
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: Xpnpep2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(568148..594295)
location: region:568148-594295:-1
so has part: feature:568148-594295:-1:exon
subclass of: SO_0000010

102000538
type: Gene
SIO_000068: ncbigene

position:568148:-1
position: 568148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:594295:-1
position: 594295
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:568148-594295:-1:exon

Xpnpep2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Xpnpep2
product: X-prolyl aminopeptidase 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 38% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_005358406.1
SIO_010081: Xpnpep2
subclass of: SO_0000673
so part of: Xpnpep2
location: complement(join(568148..568342,568857..568946,571681..571757,572414..572473,572815..572919,573475..573544,574989..575049,576666..576737,578132..578209,578822..578931,579635..579724,580423..580618,580900..580981,581630..581731,585318..585464,586462..586539,586782..586886,587846..587909,589340..589450,591589..591662,594247..594295))
location: region:568148-594295:-1
so has part: feature:594247-594295:-1:exon
so has part: feature:591589-591662:-1:exon
so has part: feature:589340-589450:-1:exon
so has part: feature:587846-587909:-1:exon
so has part: feature:586782-586886:-1:exon
so has part: feature:586462-586539:-1:exon
so has part: feature:585318-585464:-1:exon
so has part: feature:581630-581731:-1:exon
so has part: feature:580900-580981:-1:exon
so has part: feature:580423-580618:-1:exon
so has part: feature:579635-579724:-1:exon
so has part: feature:578822-578931:-1:exon
so has part: feature:578132-578209:-1:exon
so has part: feature:576666-576737:-1:exon
so has part: feature:574989-575049:-1:exon
so has part: feature:573475-573544:-1:exon
so has part: feature:572815-572919:-1:exon
so has part: feature:572414-572473:-1:exon
so has part: feature:571681-571757:-1:exon
so has part: feature:568857-568946:-1:exon
so has part: feature:568148-568342:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:594247-594295:-1:exon

position:594247:-1
position: 594247
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:591589-591662:-1:exon

position:591589:-1
position: 591589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:591662:-1
position: 591662
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:589340-589450:-1:exon

position:589340:-1
position: 589340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:589450:-1
position: 589450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:587846-587909:-1:exon

position:587846:-1
position: 587846
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:587909:-1
position: 587909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:586782-586886:-1:exon

position:586782:-1
position: 586782
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:586886:-1
position: 586886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:586462-586539:-1:exon

position:586462:-1
position: 586462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:586539:-1
position: 586539
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:585318-585464:-1:exon

position:585318:-1
position: 585318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:585464:-1
position: 585464
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:581630-581731:-1:exon

position:581630:-1
position: 581630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:581731:-1
position: 581731
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:580900-580981:-1:exon

position:580900:-1
position: 580900
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:580981:-1
position: 580981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:580423-580618:-1:exon

position:580423:-1
position: 580423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:580618:-1
position: 580618
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:579635-579724:-1:exon

position:579635:-1
position: 579635
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:579724:-1
position: 579724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:578822-578931:-1:exon

position:578822:-1
position: 578822
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:578931:-1
position: 578931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:578132-578209:-1:exon

position:578132:-1
position: 578132
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:578209:-1
position: 578209
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:576666-576737:-1:exon

position:576666:-1
position: 576666
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:576737:-1
position: 576737
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:574989-575049:-1:exon

position:574989:-1
position: 574989
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:575049:-1
position: 575049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:573475-573544:-1:exon

position:573475:-1
position: 573475
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:573544:-1
position: 573544
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:572815-572919:-1:exon

position:572815:-1
position: 572815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:572919:-1
position: 572919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:572414-572473:-1:exon

position:572414:-1
position: 572414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:572473:-1
position: 572473
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:571681-571757:-1:exon

position:571681:-1
position: 571681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:571757:-1
position: 571757
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:568857-568946:-1:exon

position:568857:-1
position: 568857
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:568946:-1
position: 568946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:568148-568342:-1:exon

position:568342:-1
position: 568342
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Xpnpep2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Xpnpep2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: xaa-Pro aminopeptidase 2
translation: MAQAHWHCYSWLVLLCACAWSYPQAGSLGREDVRNCSSNPPFLPVSAVNTTMRLAALRQQIQAWNLSAYIIPDTDAHMSEYIGKQDERRAWISGFSGTAGVAVVTMRKAALWTDSRYWTQAERQMDCNWELHREGNIPSWVLAEVPAEGRVGFDPFLLSVDSWEDFDLELQGSKRHLVSITTNLVDLAWGSERPPLPSQPIYALPEEFTGSTWQEKVSTVRSYMKNHTMAPTALLLSALDETAWLFNLRSSDIPYNPFFYSYTLLTDSSIRLFVNKSRFSLETLQYLNTNCITSMCVQLEDYSQVRDSVKAYASGNVTILISTSYTNYGLYEVIPKEKVMIQMYSPVMGVKAVKNSKEQALLKASHVRDAVVVIQYLVWLEKNVPKGTVDEFSGAEYIDDLRRNENFSSGPSFETISASGLNAALAHYSPTKELHRKLSSDEMYLVDSGGQYWDGTTDITRTVHWGTPTAFQKEAYTRVLMGNIDLSRSIFPAATSGRVLDTLARKALWEVGLNYGHGTGHGIGNFLCVHEWPVGFQSSNIAMNKGMFTSIEPGYYQDGEFGIRLEDVALVVEAKTKYPGAYLTFEVVSFVPYDRNLIDVSLLSPEQLQYLNRYYQTIREKVGPELQRRQLLEELAWLEEHTKPLSAMAPHTTSLASLWVASTLAILSWSN
SIO_010081: Xpnpep2
subclass of: SO_0000673
so part of: Xpnpep2
location: complement(join(568148..568342,568857..568946,571681..571757,572414..572473,572815..572919,573475..573544,574989..575049,576666..576737,578132..578209,578822..578931,579635..579724,580423..580618,580900..580981,581630..581731,585318..585464,586462..586539,586782..586886,587846..587909,589340..589450,591589..591662,594247..594295))
location: region:568148-594295:-1
so has part: feature:594247-594295:-1:exon
so has part: feature:591589-591662:-1:exon
so has part: feature:589340-589450:-1:exon
so has part: feature:587846-587909:-1:exon
so has part: feature:586782-586886:-1:exon
so has part: feature:586462-586539:-1:exon
so has part: feature:585318-585464:-1:exon
so has part: feature:581630-581731:-1:exon
so has part: feature:580900-580981:-1:exon
so has part: feature:580423-580618:-1:exon
so has part: feature:579635-579724:-1:exon
so has part: feature:578822-578931:-1:exon
so has part: feature:578132-578209:-1:exon
so has part: feature:576666-576737:-1:exon
so has part: feature:574989-575049:-1:exon
so has part: feature:573475-573544:-1:exon
so has part: feature:572815-572919:-1:exon
so has part: feature:572414-572473:-1:exon
so has part: feature:571681-571757:-1:exon
so has part: feature:568857-568946:-1:exon
so has part: feature:568148-568342:-1:exon

XP_005358463.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:594247-594295:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:591589-591662:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:589340-589450:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:587846-587909:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:586782-586886:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:586462-586539:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:585318-585464:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:581630-581731:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:580900-580981:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:580423-580618:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:579635-579724:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:578822-578931:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:578132-578209:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:576666-576737:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:574989-575049:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:573475-573544:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:572815-572919:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:572414-572473:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:571681-571757:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:568857-568946:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:568148-568342:-1:exon

Apln
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: Apln
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 678425..688057
location: region:678425-688057:1
so has part: feature:678425-688057:1:exon
subclass of: SO_0000010

102000815
type: Gene
SIO_000068: ncbigene

position:678425:1
position: 678425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:688057:1
position: 688057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:678425-688057:1:exon

Apln
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Apln
product: apelin
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_005358407.3
SIO_010081: Apln
subclass of: SO_0000673
so part of: Apln
location: join(678425..678847,684757..684928,685532..688057)
location: region:678425-688057:1
so has part: feature:678425-678847:1:exon
so has part: feature:684757-684928:1:exon
so has part: feature:685532-688057:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:678425-678847:1:exon

position:678847:1
position: 678847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:684757-684928:1:exon

position:684757:1
position: 684757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:684928:1
position: 684928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:685532-688057:1:exon

position:685532:1
position: 685532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Apln
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Apln
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: apelin
translation: MNLRLCVQALLLLWLSLTAVCGVPLMLPPDGKGLEEGNMRYLVQPRASRTGPGPWQGGRRKFRRQRPRLSHKGPMPF
SIO_010081: Apln
subclass of: SO_0000673
so part of: Apln
location: join(678781..678847,684757..684923)
location: region:678781-684923:1
so has part: feature:678781-678847:1:exon
so has part: feature:684757-684923:1:exon

XP_005358464.1
type: Protein
SIO_000068: ncbiprotein

position:678781:1
position: 678781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:684923:1
position: 684923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:678781-678847:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:684757-684923:1:exon

Ocrl
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: Ocrl
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(754433..813069)
location: region:754433-813069:-1
so has part: feature:754433-813069:-1:exon
subclass of: SO_0000010

102001097
type: Gene
SIO_000068: ncbigene

position:754433:-1
position: 754433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:813069:-1
position: 813069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:754433-813069:-1:exon

Ocrl
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Ocrl
product: OCRL, inositol polyphosphate-5-phosphatase, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_026784859.1
SIO_010081: Ocrl
subclass of: SO_0000673
so part of: Ocrl
location: complement(join(754433..756869,757075..757186,758232..758359,758963..759047,759916..760032,773404..773639,773828..773993,774574..774684,778490..778625,780047..780156,783245..783356,785332..785519,785618..785734,787187..787301,788661..788762,789939..790100,790187..790307,790931..791017,791410..791520,805859..805897,809104..809183,812535..812614,812857..813069))
location: region:754433-813069:-1
so has part: feature:812857-813069:-1:exon
so has part: feature:812535-812614:-1:exon
so has part: feature:809104-809183:-1:exon
so has part: feature:805859-805897:-1:exon
so has part: feature:791410-791520:-1:exon
so has part: feature:790931-791017:-1:exon
so has part: feature:790187-790307:-1:exon
so has part: feature:789939-790100:-1:exon
so has part: feature:788661-788762:-1:exon
so has part: feature:787187-787301:-1:exon
so has part: feature:785618-785734:-1:exon
so has part: feature:785332-785519:-1:exon
so has part: feature:783245-783356:-1:exon
so has part: feature:780047-780156:-1:exon
so has part: feature:778490-778625:-1:exon
so has part: feature:774574-774684:-1:exon
so has part: feature:773828-773993:-1:exon
so has part: feature:773404-773639:-1:exon
so has part: feature:759916-760032:-1:exon
so has part: feature:758963-759047:-1:exon
so has part: feature:758232-758359:-1:exon
so has part: feature:757075-757186:-1:exon
so has part: feature:754433-756869:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:812857-813069:-1:exon

position:812857:-1
position: 812857
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:812535-812614:-1:exon

position:812535:-1
position: 812535
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:812614:-1
position: 812614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:809104-809183:-1:exon

position:809104:-1
position: 809104
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:809183:-1
position: 809183
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:805859-805897:-1:exon

position:805859:-1
position: 805859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:805897:-1
position: 805897
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:791410-791520:-1:exon

position:791410:-1
position: 791410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:791520:-1
position: 791520
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:790931-791017:-1:exon

position:790931:-1
position: 790931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:791017:-1
position: 791017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:790187-790307:-1:exon

position:790187:-1
position: 790187
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:790307:-1
position: 790307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:789939-790100:-1:exon

position:789939:-1
position: 789939
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:790100:-1
position: 790100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:788661-788762:-1:exon

position:788661:-1
position: 788661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:788762:-1
position: 788762
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:787187-787301:-1:exon

position:787187:-1
position: 787187
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:787301:-1
position: 787301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:785618-785734:-1:exon

position:785618:-1
position: 785618
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:785734:-1
position: 785734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:785332-785519:-1:exon

position:785332:-1
position: 785332
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:785519:-1
position: 785519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:783245-783356:-1:exon

position:783245:-1
position: 783245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:783356:-1
position: 783356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:780047-780156:-1:exon

position:780047:-1
position: 780047
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:780156:-1
position: 780156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:778490-778625:-1:exon

position:778490:-1
position: 778490
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:778625:-1
position: 778625
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:774574-774684:-1:exon

position:774574:-1
position: 774574
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:774684:-1
position: 774684
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:773828-773993:-1:exon

position:773828:-1
position: 773828
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:773993:-1
position: 773993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:773404-773639:-1:exon

position:773404:-1
position: 773404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:773639:-1
position: 773639
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:759916-760032:-1:exon

position:759916:-1
position: 759916
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:760032:-1
position: 760032
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:758963-759047:-1:exon

position:758963:-1
position: 758963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:759047:-1
position: 759047
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:758232-758359:-1:exon

position:758232:-1
position: 758232
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:758359:-1
position: 758359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:757075-757186:-1:exon

position:757075:-1
position: 757075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:757186:-1
position: 757186
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:754433-756869:-1:exon

position:756869:-1
position: 756869
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Ocrl
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Ocrl
product: OCRL, inositol polyphosphate-5-phosphatase, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_026784858.1
SIO_010081: Ocrl
subclass of: SO_0000673
so part of: Ocrl
location: complement(join(754433..756869,757075..757186,758232..758359,758963..759047,759916..760032,763340..763363,773404..773639,773828..773993,774574..774684,778490..778625,780047..780156,783245..783356,785332..785519,785618..785734,787187..787301,788661..788762,789939..790100,790187..790307,790931..791017,791410..791520,805859..805897,809104..809183,812535..812614,812857..813069))
location: region:754433-813069:-1
so has part: feature:812857-813069:-1:exon
so has part: feature:812535-812614:-1:exon
so has part: feature:809104-809183:-1:exon
so has part: feature:805859-805897:-1:exon
so has part: feature:791410-791520:-1:exon
so has part: feature:790931-791017:-1:exon
so has part: feature:790187-790307:-1:exon
so has part: feature:789939-790100:-1:exon
so has part: feature:788661-788762:-1:exon
so has part: feature:787187-787301:-1:exon
so has part: feature:785618-785734:-1:exon
so has part: feature:785332-785519:-1:exon
so has part: feature:783245-783356:-1:exon
so has part: feature:780047-780156:-1:exon
so has part: feature:778490-778625:-1:exon
so has part: feature:774574-774684:-1:exon
so has part: feature:773828-773993:-1:exon
so has part: feature:773404-773639:-1:exon
so has part: feature:763340-763363:-1:exon
so has part: feature:759916-760032:-1:exon
so has part: feature:758963-759047:-1:exon
so has part: feature:758232-758359:-1:exon
so has part: feature:757075-757186:-1:exon
so has part: feature:754433-756869:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:812857-813069:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:812535-812614:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:809104-809183:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:805859-805897:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:791410-791520:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:790931-791017:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:790187-790307:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:789939-790100:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:788661-788762:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:787187-787301:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:785618-785734:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:785332-785519:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:783245-783356:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:780047-780156:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:778490-778625:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:774574-774684:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:773828-773993:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:773404-773639:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:763340-763363:-1:exon

position:763340:-1
position: 763340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:763363:-1
position: 763363
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:759916-760032:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:758963-759047:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:758232-758359:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:757075-757186:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:754433-756869:-1:exon

Ocrl
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Ocrl
product: OCRL, inositol polyphosphate-5-phosphatase, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_026784860.1
SIO_010081: Ocrl
subclass of: SO_0000673
so part of: Ocrl
location: complement(join(754433..756869,757075..757186,758232..758359,758963..759047,759916..760032,763340..763363,773404..773639,773828..773993,774574..774684,778490..778625,780047..780156,783245..783356,785332..785519,785618..785734,787187..787301,788661..788762,789939..790100,790187..790307,790931..791017,791410..791520,805859..805897,809104..809183,812420..812521))
location: region:754433-812521:-1
so has part: feature:812420-812521:-1:exon
so has part: feature:809104-809183:-1:exon
so has part: feature:805859-805897:-1:exon
so has part: feature:791410-791520:-1:exon
so has part: feature:790931-791017:-1:exon
so has part: feature:790187-790307:-1:exon
so has part: feature:789939-790100:-1:exon
so has part: feature:788661-788762:-1:exon
so has part: feature:787187-787301:-1:exon
so has part: feature:785618-785734:-1:exon
so has part: feature:785332-785519:-1:exon
so has part: feature:783245-783356:-1:exon
so has part: feature:780047-780156:-1:exon
so has part: feature:778490-778625:-1:exon
so has part: feature:774574-774684:-1:exon
so has part: feature:773828-773993:-1:exon
so has part: feature:773404-773639:-1:exon
so has part: feature:763340-763363:-1:exon
so has part: feature:759916-760032:-1:exon
so has part: feature:758963-759047:-1:exon
so has part: feature:758232-758359:-1:exon
so has part: feature:757075-757186:-1:exon
so has part: feature:754433-756869:-1:exon

position:812521:-1
position: 812521
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:812420-812521:-1:exon

position:812420:-1
position: 812420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:809104-809183:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:805859-805897:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:791410-791520:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:790931-791017:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:790187-790307:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:789939-790100:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:788661-788762:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:787187-787301:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:785618-785734:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:785332-785519:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:783245-783356:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:780047-780156:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:778490-778625:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:774574-774684:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:773828-773993:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:773404-773639:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:763340-763363:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:759916-760032:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:758963-759047:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:758232-758359:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:757075-757186:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:754433-756869:-1:exon

Ocrl
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Ocrl
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: inositol polyphosphate 5-phosphatase OCRL-1 isoform X2
translation: MEPQLPIGAQPLAMVEGLEMKGPLREPCTLTLAQRNGLYELIIQLHGKEQHVQDIVPINSHFKCVQEAEETLLIDIASNSGCKIRVQGDWTRERHFEIPDEELCLKFLSEVFAAQEAQSQLLVPEQKESSSWYQKLDTKDKPTYSGLLGFEDNFSSMNLDKSMNTPNYPTAIHREPPPPPASVNRMPLREKETSNKEQPKVTNTMRKLFVPNTQSGQREGLIKHLLAKREKEYVNLQSFRFFVGTWNVNGQSPDSSLEPWLNCDPNPPDIYCIGFQELDLSTEAFFYFESVKEQEWSMAVERGLPSKAKYKKVQLVRLVGMMLLIFARKDQCRYIRDIATETVGTGIMGKMGNKGGVAVRFVFHNTTFCIVNSHLAAHVEEFERRNQDYKDICARMSFTVPNQALPQLNIMKHDVVIWLGDLNYRLCMPDANEVKSLINKNDLQKLLKFDQLNIQRTQKKAFVDFNEGEIKFIPTYKYDSKTDRWDSSGKCRVPAWCDRILWRGININQLHYRSHMKLKTSDHKPVSALFHIGVKVVDERRYRKVFEDIVRIMDRMENDFLPSLELSRREFMFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVSKDSVTILNSGEDKIEDILVLHLDRGKDYFLTIGGNYLPSCFGTSLEALCRMKRPIREVPVTKLIDLEKSLLQMVPLEEGASERPLQVPKEIWLLVDHLFRYARHQEDLFQTPGMQEELQQIIDCLDTSIPETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAHDPRICRQVISQLPRCHRNVFRYLMAFLRELLKFSDYNNVSANMIATLFTSLLLRPPPNLMARQTPSDRQRAIQFLLVFLLGSEED
SIO_010081: Ocrl
subclass of: SO_0000673
so part of: Ocrl
location: complement(join(756745..756869,757075..757186,758232..758359,758963..759047,759916..760032,773404..773639,773828..773993,774574..774684,778490..778625,780047..780156,783245..783356,785332..785519,785618..785734,787187..787301,788661..788762,789939..790100,790187..790307,790931..791017,791410..791520,805859..805897,809104..809183,812535..812614,812857..812895))
location: region:756745-812895:-1
so has part: feature:812857-812895:-1:exon
so has part: feature:812535-812614:-1:exon
so has part: feature:809104-809183:-1:exon
so has part: feature:805859-805897:-1:exon
so has part: feature:791410-791520:-1:exon
so has part: feature:790931-791017:-1:exon
so has part: feature:790187-790307:-1:exon
so has part: feature:789939-790100:-1:exon
so has part: feature:788661-788762:-1:exon
so has part: feature:787187-787301:-1:exon
so has part: feature:785618-785734:-1:exon
so has part: feature:785332-785519:-1:exon
so has part: feature:783245-783356:-1:exon
so has part: feature:780047-780156:-1:exon
so has part: feature:778490-778625:-1:exon
so has part: feature:774574-774684:-1:exon
so has part: feature:773828-773993:-1:exon
so has part: feature:773404-773639:-1:exon
so has part: feature:759916-760032:-1:exon
so has part: feature:758963-759047:-1:exon
so has part: feature:758232-758359:-1:exon
so has part: feature:757075-757186:-1:exon
so has part: feature:756745-756869:-1:exon

XP_026640660.1
type: Protein
SIO_000068: ncbiprotein

position:756745:-1
position: 756745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:812895:-1
position: 812895
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:812857-812895:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:812535-812614:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:809104-809183:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:805859-805897:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:791410-791520:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:790931-791017:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:790187-790307:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:789939-790100:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:788661-788762:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:787187-787301:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:785618-785734:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:785332-785519:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:783245-783356:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:780047-780156:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:778490-778625:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:774574-774684:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:773828-773993:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:773404-773639:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:759916-760032:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:758963-759047:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:758232-758359:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:757075-757186:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:756745-756869:-1:exon

Ocrl
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Ocrl
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: inositol polyphosphate 5-phosphatase OCRL-1 isoform X1
translation: MEPQLPIGAQPLAMVEGLEMKGPLREPCTLTLAQRNGLYELIIQLHGKEQHVQDIVPINSHFKCVQEAEETLLIDIASNSGCKIRVQGDWTRERHFEIPDEELCLKFLSEVFAAQEAQSQLLVPEQKESSSWYQKLDTKDKPTYSGLLGFEDNFSSMNLDKSMNTPNYPTAIHREPPPPPASVNRMPLREKETSNKEQPKVTNTMRKLFVPNTQSGQREGLIKHLLAKREKEYVNLQSFRFFVGTWNVNGQSPDSSLEPWLNCDPNPPDIYCIGFQELDLSTEAFFYFESVKEQEWSMAVERGLPSKAKYKKVQLVRLVGMMLLIFARKDQCRYIRDIATETVGTGIMGKMGNKGGVAVRFVFHNTTFCIVNSHLAAHVEEFERRNQDYKDICARMSFTVPNQALPQLNIMKHDVVIWLGDLNYRLCMPDANEVKSLINKNDLQKLLKFDQLNIQRTQKKAFVDFNEGEIKFIPTYKYDSKTDRWDSSGKCRVPAWCDRILWRGININQLHYRSHMKLKTSDHKPVSALFHIGVKVVDERRYRKVFEDIVRIMDRMENDFLPSLELSRREFMFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVSKDSVTILNSGEDKIEDILVLHLDRGKDYFLTIGGNYLPSCFGTSLEALCRMKRPIREVPVTKLIDLEEDSFLEKEKSLLQMVPLEEGASERPLQVPKEIWLLVDHLFRYARHQEDLFQTPGMQEELQQIIDCLDTSIPETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAHDPRICRQVISQLPRCHRNVFRYLMAFLRELLKFSDYNNVSANMIATLFTSLLLRPPPNLMARQTPSDRQRAIQFLLVFLLGSEED
SIO_010081: Ocrl
subclass of: SO_0000673
so part of: Ocrl
location: complement(join(756745..756869,757075..757186,758232..758359,758963..759047,759916..760032,763340..763363,773404..773639,773828..773993,774574..774684,778490..778625,780047..780156,783245..783356,785332..785519,785618..785734,787187..787301,788661..788762,789939..790100,790187..790307,790931..791017,791410..791520,805859..805897,809104..809183,812535..812614,812857..812895))
location: region:756745-812895:-1
so has part: feature:812857-812895:-1:exon
so has part: feature:812535-812614:-1:exon
so has part: feature:809104-809183:-1:exon
so has part: feature:805859-805897:-1:exon
so has part: feature:791410-791520:-1:exon
so has part: feature:790931-791017:-1:exon
so has part: feature:790187-790307:-1:exon
so has part: feature:789939-790100:-1:exon
so has part: feature:788661-788762:-1:exon
so has part: feature:787187-787301:-1:exon
so has part: feature:785618-785734:-1:exon
so has part: feature:785332-785519:-1:exon
so has part: feature:783245-783356:-1:exon
so has part: feature:780047-780156:-1:exon
so has part: feature:778490-778625:-1:exon
so has part: feature:774574-774684:-1:exon
so has part: feature:773828-773993:-1:exon
so has part: feature:773404-773639:-1:exon
so has part: feature:763340-763363:-1:exon
so has part: feature:759916-760032:-1:exon
so has part: feature:758963-759047:-1:exon
so has part: feature:758232-758359:-1:exon
so has part: feature:757075-757186:-1:exon
so has part: feature:756745-756869:-1:exon

XP_026640659.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:812857-812895:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:812535-812614:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:809104-809183:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:805859-805897:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:791410-791520:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:790931-791017:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:790187-790307:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:789939-790100:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:788661-788762:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:787187-787301:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:785618-785734:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:785332-785519:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:783245-783356:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:780047-780156:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:778490-778625:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:774574-774684:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:773828-773993:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:773404-773639:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:763340-763363:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:759916-760032:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:758963-759047:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:758232-758359:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:757075-757186:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:756745-756869:-1:exon

Ocrl
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Ocrl
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: inositol polyphosphate 5-phosphatase OCRL-1 isoform X3
translation: MNLDKSMNTPNYPTAIHREPPPPPASVNRMPLREKETSNKEQPKVTNTMRKLFVPNTQSGQREGLIKHLLAKREKEYVNLQSFRFFVGTWNVNGQSPDSSLEPWLNCDPNPPDIYCIGFQELDLSTEAFFYFESVKEQEWSMAVERGLPSKAKYKKVQLVRLVGMMLLIFARKDQCRYIRDIATETVGTGIMGKMGNKGGVAVRFVFHNTTFCIVNSHLAAHVEEFERRNQDYKDICARMSFTVPNQALPQLNIMKHDVVIWLGDLNYRLCMPDANEVKSLINKNDLQKLLKFDQLNIQRTQKKAFVDFNEGEIKFIPTYKYDSKTDRWDSSGKCRVPAWCDRILWRGININQLHYRSHMKLKTSDHKPVSALFHIGVKVVDERRYRKVFEDIVRIMDRMENDFLPSLELSRREFMFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVSKDSVTILNSGEDKIEDILVLHLDRGKDYFLTIGGNYLPSCFGTSLEALCRMKRPIREVPVTKLIDLEEDSFLEKEKSLLQMVPLEEGASERPLQVPKEIWLLVDHLFRYARHQEDLFQTPGMQEELQQIIDCLDTSIPETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAHDPRICRQVISQLPRCHRNVFRYLMAFLRELLKFSDYNNVSANMIATLFTSLLLRPPPNLMARQTPSDRQRAIQFLLVFLLGSEED
SIO_010081: Ocrl
subclass of: SO_0000673
so part of: Ocrl
location: complement(join(756745..756869,757075..757186,758232..758359,758963..759047,759916..760032,763340..763363,773404..773639,773828..773993,774574..774684,778490..778625,780047..780156,783245..783356,785332..785519,785618..785734,787187..787301,788661..788762,789939..790100,790187..790275))
location: region:756745-790275:-1
so has part: feature:790187-790275:-1:exon
so has part: feature:789939-790100:-1:exon
so has part: feature:788661-788762:-1:exon
so has part: feature:787187-787301:-1:exon
so has part: feature:785618-785734:-1:exon
so has part: feature:785332-785519:-1:exon
so has part: feature:783245-783356:-1:exon
so has part: feature:780047-780156:-1:exon
so has part: feature:778490-778625:-1:exon
so has part: feature:774574-774684:-1:exon
so has part: feature:773828-773993:-1:exon
so has part: feature:773404-773639:-1:exon
so has part: feature:763340-763363:-1:exon
so has part: feature:759916-760032:-1:exon
so has part: feature:758963-759047:-1:exon
so has part: feature:758232-758359:-1:exon
so has part: feature:757075-757186:-1:exon
so has part: feature:756745-756869:-1:exon

XP_026640661.1
type: Protein
SIO_000068: ncbiprotein

position:790275:-1
position: 790275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:790187-790275:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:789939-790100:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:788661-788762:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:787187-787301:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:785618-785734:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:785332-785519:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:783245-783356:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:780047-780156:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:778490-778625:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:774574-774684:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:773828-773993:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:773404-773639:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:763340-763363:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:759916-760032:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:758963-759047:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:758232-758359:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:757075-757186:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:756745-756869:-1:exon

Smarca1
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: Smarca1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 846416..938459
location: region:846416-938459:1
so has part: feature:846416-938459:1:exon
subclass of: SO_0000010

102001565
type: Gene
SIO_000068: ncbigene

position:846416:1
position: 846416
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:938459:1
position: 938459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:846416-938459:1:exon

Smarca1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Smarca1
product: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_026784798.1
SIO_010081: Smarca1
subclass of: SO_0000673
so part of: Smarca1
location: join(846416..846732,855403..855504,858269..858435,858723..858823,858932..859032,868978..869157,872168..872323,873464..873595,874677..874745,879811..879920,880649..880875,881850..881971,884451..884486,885339..885491,887248..887380,896297..896445,898807..898926,909298..909408,909879..909992,919898..920020,922412..922544,925294..925412,925524..925736,936568..936678,937746..938459)
location: region:846416-938459:1
so has part: feature:846416-846732:1:exon
so has part: feature:855403-855504:1:exon
so has part: feature:858269-858435:1:exon
so has part: feature:858723-858823:1:exon
so has part: feature:858932-859032:1:exon
so has part: feature:868978-869157:1:exon
so has part: feature:872168-872323:1:exon
so has part: feature:873464-873595:1:exon
so has part: feature:874677-874745:1:exon
so has part: feature:879811-879920:1:exon
so has part: feature:880649-880875:1:exon
so has part: feature:881850-881971:1:exon
so has part: feature:884451-884486:1:exon
so has part: feature:885339-885491:1:exon
so has part: feature:887248-887380:1:exon
so has part: feature:896297-896445:1:exon
so has part: feature:898807-898926:1:exon
so has part: feature:909298-909408:1:exon
so has part: feature:909879-909992:1:exon
so has part: feature:919898-920020:1:exon
so has part: feature:922412-922544:1:exon
so has part: feature:925294-925412:1:exon
so has part: feature:925524-925736:1:exon
so has part: feature:936568-936678:1:exon
so has part: feature:937746-938459:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:846416-846732:1:exon

position:846732:1
position: 846732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:855403-855504:1:exon

position:855403:1
position: 855403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:855504:1
position: 855504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:858269-858435:1:exon

position:858269:1
position: 858269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:858435:1
position: 858435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:858723-858823:1:exon

position:858723:1
position: 858723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:858823:1
position: 858823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:858932-859032:1:exon

position:858932:1
position: 858932
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:859032:1
position: 859032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:868978-869157:1:exon

position:868978:1
position: 868978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:869157:1
position: 869157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:872168-872323:1:exon

position:872168:1
position: 872168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:872323:1
position: 872323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:873464-873595:1:exon

position:873464:1
position: 873464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:873595:1
position: 873595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:874677-874745:1:exon

position:874677:1
position: 874677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:874745:1
position: 874745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:879811-879920:1:exon

position:879811:1
position: 879811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:879920:1
position: 879920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:880649-880875:1:exon

position:880649:1
position: 880649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:880875:1
position: 880875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:881850-881971:1:exon

position:881850:1
position: 881850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:881971:1
position: 881971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:884451-884486:1:exon

position:884451:1
position: 884451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:884486:1
position: 884486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:885339-885491:1:exon

position:885339:1
position: 885339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:885491:1
position: 885491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:887248-887380:1:exon

position:887248:1
position: 887248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:887380:1
position: 887380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:896297-896445:1:exon

position:896297:1
position: 896297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:896445:1
position: 896445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:898807-898926:1:exon

position:898807:1
position: 898807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:898926:1
position: 898926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:909298-909408:1:exon

position:909298:1
position: 909298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:909408:1
position: 909408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:909879-909992:1:exon

position:909879:1
position: 909879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:909992:1
position: 909992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:919898-920020:1:exon

position:919898:1
position: 919898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:920020:1
position: 920020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:922412-922544:1:exon

position:922412:1
position: 922412
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:922544:1
position: 922544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:925294-925412:1:exon

position:925294:1
position: 925294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:925412:1
position: 925412
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:925524-925736:1:exon

position:925524:1
position: 925524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:925736:1
position: 925736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:936568-936678:1:exon

position:936568:1
position: 936568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:936678:1
position: 936678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:937746-938459:1:exon

position:937746:1
position: 937746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Smarca1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Smarca1
product: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_026784799.1
SIO_010081: Smarca1
subclass of: SO_0000673
so part of: Smarca1
location: join(846416..846732,855403..855504,858269..858435,858723..858823,858932..859032,868978..869157,872168..872323,873464..873595,874677..874745,879811..879920,880649..880875,881850..881971,884451..884486,885339..885491,887248..887380,896297..896445,898807..898926,909298..909408,909879..909992,919898..920020,922412..922544,925294..925412,925524..925736,936568..936678,937677..937843)
location: region:846416-937843:1
so has part: feature:846416-846732:1:exon
so has part: feature:855403-855504:1:exon
so has part: feature:858269-858435:1:exon
so has part: feature:858723-858823:1:exon
so has part: feature:858932-859032:1:exon
so has part: feature:868978-869157:1:exon
so has part: feature:872168-872323:1:exon
so has part: feature:873464-873595:1:exon
so has part: feature:874677-874745:1:exon
so has part: feature:879811-879920:1:exon
so has part: feature:880649-880875:1:exon
so has part: feature:881850-881971:1:exon
so has part: feature:884451-884486:1:exon
so has part: feature:885339-885491:1:exon
so has part: feature:887248-887380:1:exon
so has part: feature:896297-896445:1:exon
so has part: feature:898807-898926:1:exon
so has part: feature:909298-909408:1:exon
so has part: feature:909879-909992:1:exon
so has part: feature:919898-920020:1:exon
so has part: feature:922412-922544:1:exon
so has part: feature:925294-925412:1:exon
so has part: feature:925524-925736:1:exon
so has part: feature:936568-936678:1:exon
so has part: feature:937677-937843:1:exon

position:937843:1
position: 937843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:846416-846732:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:855403-855504:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:858269-858435:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:858723-858823:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:858932-859032:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:868978-869157:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:872168-872323:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:873464-873595:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:874677-874745:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:879811-879920:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:880649-880875:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:881850-881971:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:884451-884486:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:885339-885491:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:887248-887380:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:896297-896445:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:898807-898926:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:909298-909408:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:909879-909992:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:919898-920020:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:922412-922544:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:925294-925412:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:925524-925736:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:936568-936678:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:937677-937843:1:exon

position:937677:1
position: 937677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Smarca1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Smarca1
product: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_005358411.3
SIO_010081: Smarca1
subclass of: SO_0000673
so part of: Smarca1
location: join(846559..846732,855403..855504,858269..858435,858723..858823,858932..859032,868978..869157,872168..872323,873464..873595,874677..874745,879811..879920,880649..880875,881850..881971,885339..885491,887248..887380,896297..896445,898807..898926,909298..909408,909879..909992,919898..920020,922412..922544,925294..925412,925524..925736,936568..936678,937746..937892)
location: region:846559-937892:1
so has part: feature:846559-846732:1:exon
so has part: feature:855403-855504:1:exon
so has part: feature:858269-858435:1:exon
so has part: feature:858723-858823:1:exon
so has part: feature:858932-859032:1:exon
so has part: feature:868978-869157:1:exon
so has part: feature:872168-872323:1:exon
so has part: feature:873464-873595:1:exon
so has part: feature:874677-874745:1:exon
so has part: feature:879811-879920:1:exon
so has part: feature:880649-880875:1:exon
so has part: feature:881850-881971:1:exon
so has part: feature:885339-885491:1:exon
so has part: feature:887248-887380:1:exon
so has part: feature:896297-896445:1:exon
so has part: feature:898807-898926:1:exon
so has part: feature:909298-909408:1:exon
so has part: feature:909879-909992:1:exon
so has part: feature:919898-920020:1:exon
so has part: feature:922412-922544:1:exon
so has part: feature:925294-925412:1:exon
so has part: feature:925524-925736:1:exon
so has part: feature:936568-936678:1:exon
so has part: feature:937746-937892:1:exon

position:846559:1
position: 846559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:937892:1
position: 937892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:846559-846732:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:855403-855504:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:858269-858435:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:858723-858823:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:858932-859032:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:868978-869157:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:872168-872323:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:873464-873595:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:874677-874745:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:879811-879920:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:880649-880875:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:881850-881971:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:885339-885491:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:887248-887380:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:896297-896445:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:898807-898926:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:909298-909408:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:909879-909992:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:919898-920020:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:922412-922544:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:925294-925412:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:925524-925736:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:936568-936678:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:937746-937892:1:exon

Smarca1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Smarca1
product: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_005358410.3
SIO_010081: Smarca1
subclass of: SO_0000673
so part of: Smarca1
location: join(846559..846732,855403..855489,858269..858435,858723..858823,858932..859032,868978..869157,872168..872323,873464..873595,874677..874745,879811..879920,880649..880875,881850..881971,884451..884486,885339..885491,887248..887380,896297..896445,898807..898926,909298..909408,909879..909992,919898..920020,922412..922544,925294..925412,925524..925736,936568..936678,937746..937892)
location: region:846559-937892:1
so has part: feature:846559-846732:1:exon
so has part: feature:855403-855489:1:exon
so has part: feature:858269-858435:1:exon
so has part: feature:858723-858823:1:exon
so has part: feature:858932-859032:1:exon
so has part: feature:868978-869157:1:exon
so has part: feature:872168-872323:1:exon
so has part: feature:873464-873595:1:exon
so has part: feature:874677-874745:1:exon
so has part: feature:879811-879920:1:exon
so has part: feature:880649-880875:1:exon
so has part: feature:881850-881971:1:exon
so has part: feature:884451-884486:1:exon
so has part: feature:885339-885491:1:exon
so has part: feature:887248-887380:1:exon
so has part: feature:896297-896445:1:exon
so has part: feature:898807-898926:1:exon
so has part: feature:909298-909408:1:exon
so has part: feature:909879-909992:1:exon
so has part: feature:919898-920020:1:exon
so has part: feature:922412-922544:1:exon
so has part: feature:925294-925412:1:exon
so has part: feature:925524-925736:1:exon
so has part: feature:936568-936678:1:exon
so has part: feature:937746-937892:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:846559-846732:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:855403-855489:1:exon

position:855489:1
position: 855489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:858269-858435:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:858723-858823:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:858932-859032:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:868978-869157:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:872168-872323:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:873464-873595:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:874677-874745:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:879811-879920:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:880649-880875:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:881850-881971:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:884451-884486:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:885339-885491:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:887248-887380:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:896297-896445:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:898807-898926:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:909298-909408:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:909879-909992:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:919898-920020:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:922412-922544:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:925294-925412:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:925524-925736:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:936568-936678:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:937746-937892:1:exon

Smarca1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Smarca1
product: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XM_005358412.3
SIO_010081: Smarca1
subclass of: SO_0000673
so part of: Smarca1
location: join(846559..846732,855403..855489,858269..858435,858723..858823,858932..859032,868978..869157,872168..872323,873464..873595,874677..874745,879811..879920,880649..880875,881850..881971,885339..885491,887248..887380,896297..896445,898807..898926,909298..909408,909879..909992,919898..920020,922412..922544,925294..925412,925524..925736,936568..936678,937746..937892)
location: region:846559-937892:1
so has part: feature:846559-846732:1:exon
so has part: feature:855403-855489:1:exon
so has part: feature:858269-858435:1:exon
so has part: feature:858723-858823:1:exon
so has part: feature:858932-859032:1:exon
so has part: feature:868978-869157:1:exon
so has part: feature:872168-872323:1:exon
so has part: feature:873464-873595:1:exon
so has part: feature:874677-874745:1:exon
so has part: feature:879811-879920:1:exon
so has part: feature:880649-880875:1:exon
so has part: feature:881850-881971:1:exon
so has part: feature:885339-885491:1:exon
so has part: feature:887248-887380:1:exon
so has part: feature:896297-896445:1:exon
so has part: feature:898807-898926:1:exon
so has part: feature:909298-909408:1:exon
so has part: feature:909879-909992:1:exon
so has part: feature:919898-920020:1:exon
so has part: feature:922412-922544:1:exon
so has part: feature:925294-925412:1:exon
so has part: feature:925524-925736:1:exon
so has part: feature:936568-936678:1:exon
so has part: feature:937746-937892:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:846559-846732:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:855403-855489:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:858269-858435:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:858723-858823:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:858932-859032:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:868978-869157:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:872168-872323:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:873464-873595:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:874677-874745:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:879811-879920:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:880649-880875:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:881850-881971:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:885339-885491:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:887248-887380:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:896297-896445:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:898807-898926:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:909298-909408:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:909879-909992:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:919898-920020:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:922412-922544:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:925294-925412:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:925524-925736:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:936568-936678:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:937746-937892:1:exon

Smarca1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Smarca1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: probable global transcription activator SNF2L1 isoform X1
translation: MEPDTATEAATVAASDARATIVVLEDEQPGPSTFKEEGAAAASTEATLATEKGEKKKEKTTSPFQLKLAAKTSKSEKEMDPEYEEKMVNMPLKADRAKRFEFLLKQTELFAHFIQPSAQKSPTSPLTMKLARPRVKKDDKQTSVSAGDYRHRRTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKEVRAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDILNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDEHIVSNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVELLGQRGAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGATHVFACKESELTDEDITTILERGEKKTAEMNERMQKMGESSLRTFRMDPEQSLYKFEGEDYREKQKLGMVEWIEPPKRERKASYAVDAYFREALRVSEPKIPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNPESPNPAVAQREEQKKIDGAEPLTPQETEEKDKLLTQGFTNWTKRDFNQFIKANEKYGRDDIDNIAREVEGKSPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKKALDAKIARYKAPFHQLRIQYGTSKGKNYTEEEDRFLICMLHKMGFDRENVYEELRQCVRNAPQFRFDWFIKSRTAMEFQRRCNTLISLIEKENMEIEERERAEKKKRATKTPMSQKRKAESATESSGKKDGKKVKS
SIO_010081: Smarca1
subclass of: SO_0000673
so part of: Smarca1
location: join(846559..846732,855403..855504,858269..858435,858723..858823,858932..859032,868978..869157,872168..872323,873464..873595,874677..874745,879811..879920,880649..880875,881850..881971,884451..884486,885339..885491,887248..887380,896297..896445,898807..898926,909298..909408,909879..909992,919898..920020,922412..922544,925294..925412,925524..925736,936568..936678,937746..937817)
location: region:846559-937817:1
so has part: feature:846559-846732:1:exon
so has part: feature:855403-855504:1:exon
so has part: feature:858269-858435:1:exon
so has part: feature:858723-858823:1:exon
so has part: feature:858932-859032:1:exon
so has part: feature:868978-869157:1:exon
so has part: feature:872168-872323:1:exon
so has part: feature:873464-873595:1:exon
so has part: feature:874677-874745:1:exon
so has part: feature:879811-879920:1:exon
so has part: feature:880649-880875:1:exon
so has part: feature:881850-881971:1:exon
so has part: feature:884451-884486:1:exon
so has part: feature:885339-885491:1:exon
so has part: feature:887248-887380:1:exon
so has part: feature:896297-896445:1:exon
so has part: feature:898807-898926:1:exon
so has part: feature:909298-909408:1:exon
so has part: feature:909879-909992:1:exon
so has part: feature:919898-920020:1:exon
so has part: feature:922412-922544:1:exon
so has part: feature:925294-925412:1:exon
so has part: feature:925524-925736:1:exon
so has part: feature:936568-936678:1:exon
so has part: feature:937746-937817:1:exon

XP_026640599.1
type: Protein
SIO_000068: ncbiprotein

position:937817:1
position: 937817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:846559-846732:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:855403-855504:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:858269-858435:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:858723-858823:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:858932-859032:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:868978-869157:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:872168-872323:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:873464-873595:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:874677-874745:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:879811-879920:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:880649-880875:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:881850-881971:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:884451-884486:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:885339-885491:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:887248-887380:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:896297-896445:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:898807-898926:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:909298-909408:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:909879-909992:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:919898-920020:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:922412-922544:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:925294-925412:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:925524-925736:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:936568-936678:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:937746-937817:1:exon

Smarca1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Smarca1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: probable global transcription activator SNF2L1 isoform X3
translation: MEPDTATEAATVAASDARATIVVLEDEQPGPSTFKEEGAAAASTEATLATEKGEKKKEKTTSPFQLKLAAKTSKSEKEMDPEYEEKMVNMPLKADRAKRFEFLLKQTELFAHFIQPSAQKSPTSPLTMKLARPRVKKDDKQTSVSAGDYRHRRTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKEVRAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDILNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDEHIVSNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREGAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGATHVFACKESELTDEDITTILERGEKKTAEMNERMQKMGESSLRTFRMDPEQSLYKFEGEDYREKQKLGMVEWIEPPKRERKASYAVDAYFREALRVSEPKIPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNPESPNPAVAQREEQKKIDGAEPLTPQETEEKDKLLTQGFTNWTKRDFNQFIKANEKYGRDDIDNIAREVEGKSPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKKALDAKIARYKAPFHQLRIQYGTSKGKNYTEEEDRFLICMLHKMGFDRENVYEELRQCVRNAPQFRFDWFIKSRTAMEFQRRCNTLISLIEKENMEIEERERAEKKKRATKTPMSQKRKAESATESSGKKDGKKVKS
SIO_010081: Smarca1
subclass of: SO_0000673
so part of: Smarca1
location: join(846559..846732,855403..855504,858269..858435,858723..858823,858932..859032,868978..869157,872168..872323,873464..873595,874677..874745,879811..879920,880649..880875,881850..881971,885339..885491,887248..887380,896297..896445,898807..898926,909298..909408,909879..909992,919898..920020,922412..922544,925294..925412,925524..925736,936568..936678,937746..937817)
location: region:846559-937817:1
so has part: feature:846559-846732:1:exon
so has part: feature:855403-855504:1:exon
so has part: feature:858269-858435:1:exon
so has part: feature:858723-858823:1:exon
so has part: feature:858932-859032:1:exon
so has part: feature:868978-869157:1:exon
so has part: feature:872168-872323:1:exon
so has part: feature:873464-873595:1:exon
so has part: feature:874677-874745:1:exon
so has part: feature:879811-879920:1:exon
so has part: feature:880649-880875:1:exon
so has part: feature:881850-881971:1:exon
so has part: feature:885339-885491:1:exon
so has part: feature:887248-887380:1:exon
so has part: feature:896297-896445:1:exon
so has part: feature:898807-898926:1:exon
so has part: feature:909298-909408:1:exon
so has part: feature:909879-909992:1:exon
so has part: feature:919898-920020:1:exon
so has part: feature:922412-922544:1:exon
so has part: feature:925294-925412:1:exon
so has part: feature:925524-925736:1:exon
so has part: feature:936568-936678:1:exon
so has part: feature:937746-937817:1:exon

XP_005358468.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:846559-846732:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:855403-855504:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:858269-858435:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:858723-858823:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:858932-859032:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:868978-869157:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:872168-872323:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:873464-873595:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:874677-874745:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:879811-879920:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:880649-880875:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:881850-881971:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:885339-885491:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:887248-887380:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:896297-896445:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:898807-898926:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:909298-909408:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:909879-909992:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:919898-920020:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:922412-922544:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:925294-925412:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:925524-925736:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:936568-936678:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:937746-937817:1:exon

Smarca1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Smarca1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: probable global transcription activator SNF2L1 isoform X2
translation: MEPDTATEAATVAASDARATIVVLEDEQPGPSTFKEEGAAAASTEATLATEKGEKKKEKTTSPFQLKLAAKTSKSEKEMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQPSAQKSPTSPLTMKLARPRVKKDDKQTSVSAGDYRHRRTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKEVRAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDILNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDEHIVSNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVELLGQRGAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGATHVFACKESELTDEDITTILERGEKKTAEMNERMQKMGESSLRTFRMDPEQSLYKFEGEDYREKQKLGMVEWIEPPKRERKASYAVDAYFREALRVSEPKIPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNPESPNPAVAQREEQKKIDGAEPLTPQETEEKDKLLTQGFTNWTKRDFNQFIKANEKYGRDDIDNIAREVEGKSPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKKALDAKIARYKAPFHQLRIQYGTSKGKNYTEEEDRFLICMLHKMGFDRENVYEELRQCVRNAPQFRFDWFIKSRTAMEFQRRCNTLISLIEKENMEIEERERAEKKKRATKTPMSQKRKAESATESSGKKDGKKVKS
SIO_010081: Smarca1
subclass of: SO_0000673
so part of: Smarca1
location: join(846559..846732,855403..855489,858269..858435,858723..858823,858932..859032,868978..869157,872168..872323,873464..873595,874677..874745,879811..879920,880649..880875,881850..881971,884451..884486,885339..885491,887248..887380,896297..896445,898807..898926,909298..909408,909879..909992,919898..920020,922412..922544,925294..925412,925524..925736,936568..936678,937746..937817)
location: region:846559-937817:1
so has part: feature:846559-846732:1:exon
so has part: feature:855403-855489:1:exon
so has part: feature:858269-858435:1:exon
so has part: feature:858723-858823:1:exon
so has part: feature:858932-859032:1:exon
so has part: feature:868978-869157:1:exon
so has part: feature:872168-872323:1:exon
so has part: feature:873464-873595:1:exon
so has part: feature:874677-874745:1:exon
so has part: feature:879811-879920:1:exon
so has part: feature:880649-880875:1:exon
so has part: feature:881850-881971:1:exon
so has part: feature:884451-884486:1:exon
so has part: feature:885339-885491:1:exon
so has part: feature:887248-887380:1:exon
so has part: feature:896297-896445:1:exon
so has part: feature:898807-898926:1:exon
so has part: feature:909298-909408:1:exon
so has part: feature:909879-909992:1:exon
so has part: feature:919898-920020:1:exon
so has part: feature:922412-922544:1:exon
so has part: feature:925294-925412:1:exon
so has part: feature:925524-925736:1:exon
so has part: feature:936568-936678:1:exon
so has part: feature:937746-937817:1:exon

XP_005358467.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:846559-846732:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:855403-855489:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:858269-858435:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:858723-858823:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:858932-859032:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:868978-869157:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:872168-872323:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:873464-873595:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:874677-874745:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:879811-879920:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:880649-880875:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:881850-881971:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:884451-884486:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:885339-885491:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:887248-887380:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:896297-896445:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:898807-898926:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:909298-909408:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:909879-909992:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:919898-920020:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:922412-922544:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:925294-925412:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:925524-925736:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:936568-936678:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:937746-937817:1:exon

Smarca1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Smarca1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: probable global transcription activator SNF2L1 isoform X4
translation: MEPDTATEAATVAASDARATIVVLEDEQPGPSTFKEEGAAAASTEATLATEKGEKKKEKTTSPFQLKLAAKTSKSEKEMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQPSAQKSPTSPLTMKLARPRVKKDDKQTSVSAGDYRHRRTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKEVRAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDILNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDEHIVSNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREGAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGATHVFACKESELTDEDITTILERGEKKTAEMNERMQKMGESSLRTFRMDPEQSLYKFEGEDYREKQKLGMVEWIEPPKRERKASYAVDAYFREALRVSEPKIPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNPESPNPAVAQREEQKKIDGAEPLTPQETEEKDKLLTQGFTNWTKRDFNQFIKANEKYGRDDIDNIAREVEGKSPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKKALDAKIARYKAPFHQLRIQYGTSKGKNYTEEEDRFLICMLHKMGFDRENVYEELRQCVRNAPQFRFDWFIKSRTAMEFQRRCNTLISLIEKENMEIEERERAEKKKRATKTPMSQKRKAESATESSGKKDGKKVKS
SIO_010081: Smarca1
subclass of: SO_0000673
so part of: Smarca1
location: join(846559..846732,855403..855489,858269..858435,858723..858823,858932..859032,868978..869157,872168..872323,873464..873595,874677..874745,879811..879920,880649..880875,881850..881971,885339..885491,887248..887380,896297..896445,898807..898926,909298..909408,909879..909992,919898..920020,922412..922544,925294..925412,925524..925736,936568..936678,937746..937817)
location: region:846559-937817:1
so has part: feature:846559-846732:1:exon
so has part: feature:855403-855489:1:exon
so has part: feature:858269-858435:1:exon
so has part: feature:858723-858823:1:exon
so has part: feature:858932-859032:1:exon
so has part: feature:868978-869157:1:exon
so has part: feature:872168-872323:1:exon
so has part: feature:873464-873595:1:exon
so has part: feature:874677-874745:1:exon
so has part: feature:879811-879920:1:exon
so has part: feature:880649-880875:1:exon
so has part: feature:881850-881971:1:exon
so has part: feature:885339-885491:1:exon
so has part: feature:887248-887380:1:exon
so has part: feature:896297-896445:1:exon
so has part: feature:898807-898926:1:exon
so has part: feature:909298-909408:1:exon
so has part: feature:909879-909992:1:exon
so has part: feature:919898-920020:1:exon
so has part: feature:922412-922544:1:exon
so has part: feature:925294-925412:1:exon
so has part: feature:925524-925736:1:exon
so has part: feature:936568-936678:1:exon
so has part: feature:937746-937817:1:exon

XP_005358469.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:846559-846732:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:855403-855489:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:858269-858435:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:858723-858823:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:858932-859032:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:868978-869157:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:872168-872323:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:873464-873595:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:874677-874745:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:879811-879920:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:880649-880875:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:881850-881971:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:885339-885491:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:887248-887380:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:896297-896445:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:898807-898926:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:909298-909408:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:909879-909992:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:919898-920020:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:922412-922544:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:925294-925412:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:925524-925736:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:936568-936678:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:937746-937817:1:exon

Smarca1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Smarca1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: probable global transcription activator SNF2L1 isoform X5
translation: MEPDTATEAATVAASDARATIVVLEDEQPGPSTFKEEGAAAASTEATLATEKGEKKKEKTTSPFQLKLAAKTSKSEKEMDPEYEEKMVNMPLKADRAKRFEFLLKQTELFAHFIQPSAQKSPTSPLTMKLARPRVKKDDKQTSVSAGDYRHRRTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKEVRAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDILNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDEHIVSNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVELLGQRGAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGATHVFACKESELTDEDITTILERGEKKTAEMNERMQKMGESSLRTFRMDPEQSLYKFEGEDYREKQKLGMVEWIEPPKRERKASYAVDAYFREALRVSEPKIPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNPESPNPAVAQREEQKKIDGAEPLTPQETEEKDKLLTQGFTNWTKRDFNQFIKANEKYGRDDIDNIAREVEGKSPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKKALDAKIARYKAPFHQLRIQYGTSKGKNYTEEEDRFLICMLHKMGFDRENVYEELRQCVRNAPQFRFDWFIKSRTAMEFQRRCNTLISLIEKENMEIEERERAEKKKRATKTPMI
SIO_010081: Smarca1
subclass of: SO_0000673
so part of: Smarca1
location: join(846559..846732,855403..855504,858269..858435,858723..858823,858932..859032,868978..869157,872168..872323,873464..873595,874677..874745,879811..879920,880649..880875,881850..881971,884451..884486,885339..885491,887248..887380,896297..896445,898807..898926,909298..909408,909879..909992,919898..920020,922412..922544,925294..925412,925524..925736,936568..936678,937677..937682)
location: region:846559-937682:1
so has part: feature:846559-846732:1:exon
so has part: feature:855403-855504:1:exon
so has part: feature:858269-858435:1:exon
so has part: feature:858723-858823:1:exon
so has part: feature:858932-859032:1:exon
so has part: feature:868978-869157:1:exon
so has part: feature:872168-872323:1:exon
so has part: feature:873464-873595:1:exon
so has part: feature:874677-874745:1:exon
so has part: feature:879811-879920:1:exon
so has part: feature:880649-880875:1:exon
so has part: feature:881850-881971:1:exon
so has part: feature:884451-884486:1:exon
so has part: feature:885339-885491:1:exon
so has part: feature:887248-887380:1:exon
so has part: feature:896297-896445:1:exon
so has part: feature:898807-898926:1:exon
so has part: feature:909298-909408:1:exon
so has part: feature:909879-909992:1:exon
so has part: feature:919898-920020:1:exon
so has part: feature:922412-922544:1:exon
so has part: feature:925294-925412:1:exon
so has part: feature:925524-925736:1:exon
so has part: feature:936568-936678:1:exon
so has part: feature:937677-937682:1:exon

XP_026640600.1
type: Protein
SIO_000068: ncbiprotein

position:937682:1
position: 937682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:846559-846732:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:855403-855504:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:858269-858435:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:858723-858823:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:858932-859032:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:868978-869157:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:872168-872323:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:873464-873595:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:874677-874745:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:879811-879920:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:880649-880875:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:881850-881971:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:884451-884486:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:885339-885491:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:887248-887380:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:896297-896445:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:898807-898926:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:909298-909408:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:909879-909992:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:919898-920020:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:922412-922544:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:925294-925412:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:925524-925736:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:936568-936678:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:937677-937682:1:exon

LOC101989010
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC101989010
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 975059..976834
location: region:975059-976834:1
so has part: feature:975059-976834:1:exon

101989010
type: Gene
SIO_000068: ncbigene

position:975059:1
position: 975059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:976834:1
position: 976834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:975059-976834:1:exon

LOC101989010
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC101989010
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 77% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC101989010
subclass of: SO_0000673
so part of: LOC101989010
location: 975059..976284
location: region:975059-976284:1
so has part: feature:975059-976284:1:exon

position:976284:1
position: 976284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:975059-976284:1:exon

LOC101989010
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC101989010
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 77% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC101989010
subclass of: SO_0000673
so part of: LOC101989010
location: 976830..976834
location: region:976830-976834:1
so has part: feature:976830-976834:1:exon

position:976830:1
position: 976830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:976830-976834:1:exon

LOC102002769
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC102002769
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(1044386..1044759)
location: region:1044386-1044759:-1
so has part: feature:1044386-1044759:-1:exon

102002769
type: Gene
SIO_000068: ncbigene

position:1044386:-1
position: 1044386
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1044759:-1
position: 1044759
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1044386-1044759:-1:exon

LOC102002769
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC102002769
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC102002769
subclass of: SO_0000673
so part of: LOC102002769
location: complement(1044386..1044759)
location: region:1044386-1044759:-1
so has part: feature:1044386-1044759:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1044386-1044759:-1:exon

LOC101989287
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC101989287
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(1078015..1142238)
location: region:1078015-1142238:-1
so has part: feature:1078015-1142238:-1:exon

101989287
type: Gene
SIO_000068: ncbigene

position:1078015:-1
position: 1078015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1142238:-1
position: 1142238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1078015-1142238:-1:exon

LOC101989287
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC101989287
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
pseudo: true
SIO_010081: LOC101989287
subclass of: SO_0000673
so part of: LOC101989287
location: complement(1078015..1078527)
location: region:1078015-1078527:-1
so has part: feature:1078015-1078527:-1:exon

position:1078527:-1
position: 1078527
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1078015-1078527:-1:exon

LOC101989287
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC101989287
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
pseudo: true
SIO_010081: LOC101989287
subclass of: SO_0000673
so part of: LOC101989287
location: complement(1078685..1079069)
location: region:1078685-1079069:-1
so has part: feature:1078685-1079069:-1:exon

position:1078685:-1
position: 1078685
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1079069:-1
position: 1079069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1078685-1079069:-1:exon

LOC101989287
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC101989287
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
pseudo: true
SIO_010081: LOC101989287
subclass of: SO_0000673
so part of: LOC101989287
location: complement(1136926..1137024)
location: region:1136926-1137024:-1
so has part: feature:1136926-1137024:-1:exon

position:1136926:-1
position: 1136926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1137024:-1
position: 1137024
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1136926-1137024:-1:exon

LOC101989287
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC101989287
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
pseudo: true
SIO_010081: LOC101989287
subclass of: SO_0000673
so part of: LOC101989287
location: complement(1141996..1142238)
location: region:1141996-1142238:-1
so has part: feature:1141996-1142238:-1:exon

position:1141996:-1
position: 1141996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1141996-1142238:-1:exon

LOC101978923
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC101978923
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1264311..1264670
location: region:1264311-1264670:1
so has part: feature:1264311-1264670:1:exon
subclass of: SO_0000010

101978923
type: Gene
SIO_000068: ncbigene

position:1264311:1
position: 1264311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1264670:1
position: 1264670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1264311-1264670:1:exon

LOC101978923
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: LOC101978923
product: small nuclear ribonucleoprotein Sm D1-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 15% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_005358417.1
SIO_010081: LOC101978923
subclass of: SO_0000673
so part of: LOC101978923
location: 1264311..1264670
location: region:1264311-1264670:1
so has part: feature:1264311-1264670:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1264311-1264670:1:exon

LOC101978923
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: LOC101978923
product: small nuclear ribonucleoprotein Sm D1-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transcript id: XM_013350456.1
SIO_010081: LOC101978923
subclass of: SO_0000673
so part of: LOC101978923
location: join(1264311..1264401,1264525..1264670)
location: region:1264311-1264670:1
so has part: feature:1264311-1264401:1:exon
so has part: feature:1264525-1264670:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1264311-1264401:1:exon

position:1264401:1
position: 1264401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1264525-1264670:1:exon

position:1264525:1
position: 1264525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC101978923
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: LOC101978923
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: small nuclear ribonucleoprotein Sm D1-like isoform X1
translation: MKLVIFLMKLSHETVIIELKNGTQVHGTISGLDVSMNTHLKALEMTLKNRDPVQLETLSIRGNNIRYFIVPDSLPLDKLLVDVEPKVKSKKREAIAGRGQGRGRGRGCGCGRGRGGPRR
SIO_010081: LOC101978923
subclass of: SO_0000673
so part of: LOC101978923
location: 1264311..1264670
location: region:1264311-1264670:1
so has part: feature:1264311-1264670:1:exon

XP_005358474.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1264311-1264670:1:exon

LOC101978923
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: LOC101978923
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: small nuclear ribonucleoprotein Sm D1-like isoform X2
translation: MKLVIFLMKLSHETVIIELKNGTQVHGTISDSLPLDKLLVDVEPKVKSKKREAIAGRGQGRGRGRGCGCGRGRGGPRR
SIO_010081: LOC101978923
subclass of: SO_0000673
so part of: LOC101978923
location: join(1264311..1264401,1264525..1264670)
location: region:1264311-1264670:1
so has part: feature:1264311-1264401:1:exon
so has part: feature:1264525-1264670:1:exon

XP_013205910.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1264311-1264401:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1264525-1264670:1:exon

LOC101979209
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC101979209
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(1953167..1954316)
location: region:1953167-1954316:-1
so has part: feature:1953167-1954316:-1:exon

101979209
type: Gene
SIO_000068: ncbigene

position:1953167:-1
position: 1953167
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1954316:-1
position: 1954316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1953167-1954316:-1:exon

LOC101979209
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC101979209
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
pseudo: true
SIO_010081: LOC101979209
subclass of: SO_0000673
so part of: LOC101979209
location: complement(1953167..1954316)
location: region:1953167-1954316:-1
so has part: feature:1953167-1954316:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1953167-1954316:-1:exon

LOC101989580
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC101989580
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 1957847..1987593
location: region:1957847-1987593:1
so has part: feature:1957847-1987593:1:exon

101989580
type: Gene
SIO_000068: ncbigene

position:1957847:1
position: 1957847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1987593:1
position: 1987593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1957847-1987593:1:exon

LOC101989580
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC101989580
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins, and 37% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC101989580
subclass of: SO_0000673
so part of: LOC101989580
location: 1957847..1957960
location: region:1957847-1957960:1
so has part: feature:1957847-1957960:1:exon

position:1957960:1
position: 1957960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1957847-1957960:1:exon

LOC101989580
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC101989580
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins, and 37% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC101989580
subclass of: SO_0000673
so part of: LOC101989580
location: 1986965..1987593
location: region:1986965-1987593:1
so has part: feature:1986965-1987593:1:exon

position:1986965:1
position: 1986965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1986965-1987593:1:exon

Actrt1
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: Actrt1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2321426..2322914)
location: region:2321426-2322914:-1
so has part: feature:2321426-2322914:-1:exon
subclass of: SO_0000010

101989872
type: Gene
SIO_000068: ncbigene

position:2321426:-1
position: 2321426
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2322914:-1
position: 2322914
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2321426-2322914:-1:exon

Actrt1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Actrt1
product: actin related protein T1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
transcript id: XM_005358448.1
SIO_010081: Actrt1
subclass of: SO_0000673
so part of: Actrt1
location: complement(join(2321426..2321469,2321789..2322914))
location: region:2321426-2322914:-1
so has part: feature:2321789-2322914:-1:exon
so has part: feature:2321426-2321469:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2321789-2322914:-1:exon

position:2321789:-1
position: 2321789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2321426-2321469:-1:exon

position:2321469:-1
position: 2321469
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Actrt1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Actrt1
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:complement(2322555..2322557),aa:OTHER)
product: LOW QUALITY PROTEIN: actin-related protein T1
translation: MFDPAVLNIPAVIFDNGSGLCKVGISGESRPRHVIDSVVGHPKFNIPSARTNRKRYFVGEEAQCMYDGLYLHYPIEHGLVTRWDDMEKLWKDLSEWELGVKPSEQPVFMTEPSLNSQETXEKTTEIMFEKFNIPALYLCNHAVGALCASACITGLVVDSGDGVTCTVPIYEGYAFSHAITKLYGAGRDITEHLTRLLAKGYTFPCILNKAVVDDIKEKLCTVSWGCEDTHKNYQQELKEYKLPDGKVIQMSEHLCQVPEVLFISDHLGIHDLGISKMVCSSSIMKCDTDIQETLFADIVLSGGTTLFSGLQYRLLRELESLAFEGTPIKITASRDRCYSAWIGGSVVTSLKTFKQMWVNAEEEFKEYGAFVVQRKFSFFGSEFFFLYFL
SIO_010081: Actrt1
subclass of: SO_0000673
so part of: Actrt1
location: complement(join(2321426..2321469,2321789..2322914))
location: region:2321426-2322914:-1
so has part: feature:2321789-2322914:-1:exon
so has part: feature:2321426-2321469:-1:exon

XP_005358505.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2321789-2322914:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2321426-2321469:-1:exon

LOC113457466
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC113457466
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(3091774..3091882)
location: region:3091774-3091882:-1
so has part: feature:3091774-3091882:-1:exon
subclass of: SO_0000623

113457466
type: Gene
SIO_000068: ncbigene

position:3091774:-1
position: 3091774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3091882:-1
position: 3091882
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3091774-3091882:-1:exon

LOC113457466
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 79684
nc RNA class: snRNA
gene: LOC113457466
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_003378030.1
SIO_010081: LOC113457466
subclass of: SO_0000673
so part of: LOC113457466
location: complement(3091774..3091882)
location: region:3091774-3091882:-1
so has part: feature:3091774-3091882:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3091774-3091882:-1:exon

Prr32
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: Prr32
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3359176..3361116)
location: region:3359176-3361116:-1
so has part: feature:3359176-3361116:-1:exon
subclass of: SO_0000010

101979492
type: Gene
SIO_000068: ncbigene

position:3359176:-1
position: 3359176
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3361116:-1
position: 3361116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3359176-3361116:-1:exon

Prr32
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Prr32
product: proline rich 32
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_005358418.2
SIO_010081: Prr32
subclass of: SO_0000673
so part of: Prr32
location: complement(join(3359176..3360117,3360933..3361116))
location: region:3359176-3361116:-1
so has part: feature:3360933-3361116:-1:exon
so has part: feature:3359176-3360117:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3360933-3361116:-1:exon

position:3360933:-1
position: 3360933
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3359176-3360117:-1:exon

position:3360117:-1
position: 3360117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Prr32
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Prr32
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: proline-rich protein 32
translation: MACTENGLEGHSCSSIIVPVDKNGSRETRHNVPLRCLNYILKDDEDDAEIWGHPPVSLRPPFTVAREGVHIPENPRARRHPFTLTPAIEEESLATAEVNSSEGLESQSKKGHDSINMSQEVSGSPMTLMIGDPRDGSGVLERNGNSSKQYMPVPRFQEFFPPRGPQTRGPPYVPTLRSGIMMEVTPGNGRRSYKGNLAHVSFPLGSPRHPIDNWQQRPLHLSTGVPGLPCSTAHCFMPPQPPAFSPFPVMPTPFASPLGFGPPLPYFFHYNTRAMHPPPYLN
SIO_010081: Prr32
subclass of: SO_0000673
so part of: Prr32
location: complement(join(3359289..3360117,3360933..3360952))
location: region:3359289-3360952:-1
so has part: feature:3360933-3360952:-1:exon
so has part: feature:3359289-3360117:-1:exon

XP_005358475.1
type: Protein
SIO_000068: ncbiprotein

position:3359289:-1
position: 3359289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3360952:-1
position: 3360952
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3360933-3360952:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3359289-3360117:-1:exon

LOC101979778
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC101979778
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(3371516..3374228)
location: region:3371516-3374228:-1
so has part: feature:3371516-3374228:-1:exon

101979778
type: Gene
SIO_000068: ncbigene

position:3371516:-1
position: 3371516
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3374228:-1
position: 3374228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3371516-3374228:-1:exon

LOC101979778
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC101979778
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC101979778
subclass of: SO_0000673
so part of: LOC101979778
location: complement(3371516..3374228)
location: region:3371516-3374228:-1
so has part: feature:3371516-3374228:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3371516-3374228:-1:exon

LOC113457441
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC113457441
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 3562503..3565265
location: region:3562503-3565265:1
so has part: feature:3562503-3565265:1:exon

113457441
type: Gene
SIO_000068: ncbigene

position:3562503:1
position: 3562503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3565265:1
position: 3565265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3562503-3565265:1:exon

LOC113457441
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC113457441
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 67% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC113457441
subclass of: SO_0000673
so part of: LOC113457441
location: 3562503..3565265
location: region:3562503-3565265:1
so has part: feature:3562503-3565265:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3562503-3565265:1:exon

LOC113457442
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC113457442
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3588151..3598634)
location: region:3588151-3598634:-1
so has part: feature:3588151-3598634:-1:exon
subclass of: SO_0000011

113457442
type: Gene
SIO_000068: ncbigene

position:3588151:-1
position: 3588151
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3598634:-1
position: 3598634
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3588151-3598634:-1:exon

LOC113457442
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 79684
nc RNA class: lncRNA
gene: LOC113457442
product: uncharacterized LOC113457442
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_003378016.1
SIO_010081: LOC113457442
subclass of: SO_0000673
so part of: LOC113457442
location: complement(join(3588151..3588401,3596345..3596431,3598448..3598634))
location: region:3588151-3598634:-1
so has part: feature:3598448-3598634:-1:exon
so has part: feature:3596345-3596431:-1:exon
so has part: feature:3588151-3588401:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3598448-3598634:-1:exon

position:3598448:-1
position: 3598448
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3596345-3596431:-1:exon

position:3596345:-1
position: 3596345
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3596431:-1
position: 3596431
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3588151-3588401:-1:exon

position:3588401:-1
position: 3588401
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC101990441
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC101990441
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3598600..3602010
location: region:3598600-3602010:1
so has part: feature:3598600-3602010:1:exon
subclass of: SO_0000010

101990441
type: Gene
SIO_000068: ncbigene

position:3598600:1
position: 3598600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3602010:1
position: 3602010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3598600-3602010:1:exon

LOC101990441
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: LOC101990441
product: DDB1- and CUL4-associated factor 12-like protein 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_026784883.1
SIO_010081: LOC101990441
subclass of: SO_0000673
so part of: LOC101990441
location: join(3598600..3599873,3599905..3600149,3600265..3602010)
location: region:3598600-3602010:1
so has part: feature:3598600-3599873:1:exon
so has part: feature:3599905-3600149:1:exon
so has part: feature:3600265-3602010:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3598600-3599873:1:exon

position:3599873:1
position: 3599873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3599905-3600149:1:exon

position:3599905:1
position: 3599905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3600149:1
position: 3600149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3600265-3602010:1:exon

position:3600265:1
position: 3600265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC101990441
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: LOC101990441
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: DDB1- and CUL4-associated factor 12-like protein 1
translation: MAPHLTGSRKRKAAEAEEGAGSSSSPGPSAVMATAEAGQAEGSLLLVKKPRLPVAHRSFVHYLKGRALGEEGHPGLAGFEDELRSYGVLRLPELLRERQLTLGPLNKVFASQWLNARQVVCGTKCNTLFVVDVKTDHIMRIPLMRDRVPDLSSGSPSCGIHAVELNPSKTLMATGGENPNSLAVYQLPTLDPVCLGDCEGHRDWIFAIAWMSDTVAVTGSRDGTLALWQVDPDMFNGSIAWHKDAGLPVYAHIRPTDMEAIPKSATNPSNRKVRALAYSNKNQELGAVSLDGYFHLWKPRSSLSRLLSLRLPYCRENVCLTYCDELSLYAVGSQSHVSFLDLRQGQQNIPPLCSREGGTGVRSLSVHQHIVTVGTGHGSLLFYDIRAQKFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVEDFPNALYTHCYNWPEMKLFVGGGPLASGLHGNYAGLWS
SIO_010081: LOC101990441
subclass of: SO_0000673
so part of: LOC101990441
location: join(3598702..3599873,3599905..3600148)
location: region:3598702-3600148:1
so has part: feature:3598702-3599873:1:exon
so has part: feature:3599905-3600148:1:exon

XP_026640684.1
type: Protein
SIO_000068: ncbiprotein

position:3598702:1
position: 3598702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3600148:1
position: 3600148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3598702-3599873:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3599905-3600148:1:exon

LOC106144066
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC106144066
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 3781663..3783307
location: region:3781663-3783307:1
so has part: feature:3781663-3783307:1:exon

106144066
type: Gene
SIO_000068: ncbigene

position:3781663:1
position: 3781663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3783307:1
position: 3783307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3781663-3783307:1:exon

LOC106144066
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC106144066
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
pseudo: true
SIO_010081: LOC106144066
subclass of: SO_0000673
so part of: LOC106144066
location: 3781663..3783307
location: region:3781663-3783307:1
so has part: feature:3781663-3783307:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3781663-3783307:1:exon

LOC101990729
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC101990729
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3938775..3940641
location: region:3938775-3940641:1
so has part: feature:3938775-3940641:1:exon
subclass of: SO_0000010

101990729
type: Gene
SIO_000068: ncbigene

position:3938775:1
position: 3938775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3940641:1
position: 3940641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3938775-3940641:1:exon

LOC101990729
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: LOC101990729
product: DDB1- and CUL4-associated factor 12-like protein 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_005358450.2
SIO_010081: LOC101990729
subclass of: SO_0000673
so part of: LOC101990729
location: 3938775..3940641
location: region:3938775-3940641:1
so has part: feature:3938775-3940641:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3938775-3940641:1:exon

LOC101990729
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: LOC101990729
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: DDB1- and CUL4-associated factor 12-like protein 2
translation: MANRGATRRRRRAATASAARPPPSRAPQQTGSRKRKAAEVEGGAGSSSSPGPAAAAASGTGHAEGPLLLAKRPRRPLARRSLVHYLKGRALGNEDHPGLTGLEGDLRNYGVLRLPELLRERQLALGPLNKVFASQWLNARQVVCGTKCNTLFVVDVQTGKITRIPLMQDRGTGQTHTQPTCGIHAIQLNPSKTLLATGGENPNSLAVYQLPTLDPVCLGDRNGHRDWIFAIAWMSDTVVVSGSRDGTVALWQVDPDICSGNIPWHNNSEIPRYSHIHPRDMEAIPRATTNPGNRKVRALAFSGKNQELGAVSLDGYFHLWKARSSLSRLLSLRLPYCRENVCLTYCDELSLYAVGSQSHVSFLDPRQHQQNIRPLCSREGGTGVRSLSFYQHIITVGTGHGSLLFYDIRAQKFLEERASASPDSFLVRTGRKLKLTCGRGWLNQDELWVNYFGGTEEFPNALYTHCYNWPEMKLFVGGGPLLSGLHGNYAGLWS
SIO_010081: LOC101990729
subclass of: SO_0000673
so part of: LOC101990729
location: 3938983..3940467
location: region:3938983-3940467:1
so has part: feature:3938983-3940467:1:exon

XP_005358507.1
type: Protein
SIO_000068: ncbiprotein

position:3938983:1
position: 3938983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3940467:1
position: 3940467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3938983-3940467:1:exon

LOC101991014
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC101991014
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4074423..4075486)
location: region:4074423-4075486:-1
so has part: feature:4074423-4075486:-1:exon
subclass of: SO_0000010

101991014
type: Gene
SIO_000068: ncbigene

position:4074423:-1
position: 4074423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4075486:-1
position: 4075486
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4074423-4075486:-1:exon

LOC101991014
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: LOC101991014
product: protein FAM117B-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 77% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_026784892.1
SIO_010081: LOC101991014
subclass of: SO_0000673
so part of: LOC101991014
location: complement(4074423..4075486)
location: region:4074423-4075486:-1
so has part: feature:4074423-4075486:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4074423-4075486:-1:exon

LOC101991014
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: LOC101991014
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:complement(4075409..4075411),aa:OTHER)
product: LOW QUALITY PROTEIN: protein FAM117B-like
translation: MRDKATQTXSEWTKEYAEKXKGSHKRSTSWGSTEQLKEIAKLCQQLQRSKHSSRHHRDKERQSPFHGSHAAINQIQAPAPKSTLTPACPITKSTGSRFWNRVEGLNQEIEIIIKETGEKEEQLVPQDIPDGHRAHPPLAQRSSSTHSIDTQTPGGDADKGSNNSNRSQSVSPISFFTISNEGSEESPCSADDLLADPRDKENGNNSLLPKYATSPKPNNSYMFKREPPEGCKRVKVFEECSPNKVNFIPKSGSAFCLVSILKPLLPIPDLTLKGSGHSLTVTTGMTTTLLQPISMASLSANTEQDRVSQGTSTVLPSASLHAPPEPIEEAEG
SIO_010081: LOC101991014
subclass of: SO_0000673
so part of: LOC101991014
location: complement(4074439..4075435)
location: region:4074439-4075435:-1
so has part: feature:4074439-4075435:-1:exon

XP_026640693.1
type: Protein
SIO_000068: ncbiprotein

position:4074439:-1
position: 4074439
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4075435:-1
position: 4075435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4074439-4075435:-1:exon

LOC113457465
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC113457465
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(4137931..4138037)
location: region:4137931-4138037:-1
so has part: feature:4137931-4138037:-1:exon
subclass of: SO_0000623

113457465
type: Gene
SIO_000068: ncbigene

position:4137931:-1
position: 4137931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4138037:-1
position: 4138037
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4137931-4138037:-1:exon

LOC113457465
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 79684
nc RNA class: snRNA
gene: LOC113457465
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_003378029.1
SIO_010081: LOC113457465
subclass of: SO_0000673
so part of: LOC113457465
location: complement(4137931..4138037)
location: region:4137931-4138037:-1
so has part: feature:4137931-4138037:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4137931-4138037:-1:exon

LOC101991284
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC101991284
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 4475280..4476259
location: region:4475280-4476259:1
so has part: feature:4475280-4476259:1:exon

101991284
type: Gene
SIO_000068: ncbigene

position:4475280:1
position: 4475280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4476259:1
position: 4476259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4475280-4476259:1:exon

LOC101991284
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC101991284
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
pseudo: true
SIO_010081: LOC101991284
subclass of: SO_0000673
so part of: LOC101991284
location: 4475280..4476259
location: region:4475280-4476259:1
so has part: feature:4475280-4476259:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4475280-4476259:1:exon

LOC101991566
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC101991566
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 4538213..4539093
location: region:4538213-4539093:1
so has part: feature:4538213-4539093:1:exon

101991566
type: Gene
SIO_000068: ncbigene

position:4538213:1
position: 4538213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4539093:1
position: 4539093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4538213-4539093:1:exon

LOC101991566
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC101991566
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 43% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC101991566
subclass of: SO_0000673
so part of: LOC101991566
location: 4538213..4538646
location: region:4538213-4538646:1
so has part: feature:4538213-4538646:1:exon

position:4538646:1
position: 4538646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4538213-4538646:1:exon

LOC101991566
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC101991566
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 43% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC101991566
subclass of: SO_0000673
so part of: LOC101991566
location: 4538914..4539093
location: region:4538914-4539093:1
so has part: feature:4538914-4539093:1:exon

position:4538914:1
position: 4538914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4538914-4539093:1:exon

LOC101991854
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC101991854
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4595765..4615811)
location: region:4595765-4615811:-1
so has part: feature:4595765-4615811:-1:exon
subclass of: SO_0000010

101991854
type: Gene
SIO_000068: ncbigene

position:4595765:-1
position: 4595765
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4615811:-1
position: 4615811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4595765-4615811:-1:exon

LOC101991854
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: LOC101991854
product: testis-expressed protein 13C-1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
transcript id: XM_005358451.1
SIO_010081: LOC101991854
subclass of: SO_0000673
so part of: LOC101991854
location: complement(join(4595765..4595918,4613866..4614044,4614165..4615811))
location: region:4595765-4615811:-1
so has part: feature:4614165-4615811:-1:exon
so has part: feature:4613866-4614044:-1:exon
so has part: feature:4595765-4595918:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4614165-4615811:-1:exon

position:4614165:-1
position: 4614165
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4613866-4614044:-1:exon

position:4613866:-1
position: 4613866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4614044:-1
position: 4614044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4595765-4595918:-1:exon

position:4595918:-1
position: 4595918
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC101991854
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: LOC101991854
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: testis-expressed protein 13C-1
translation: MAVEFGDHNSGFHHTEVIRFINNEVLMNGGSPEFYMTFRSRSWNEIEDHLHTILVDPKVPRSLKRACTWSALALSVRVGARQREQQARRVGRLQEQVGERETASWTLASELQRLREERDQAAAQLVSTQTALQEAMDEREILRGRLLQAERSALPYVPEPKTQQGSASVWSLEEEWRSREAQTMPSLEAQMPVPPVSSYLPGLPGPWVQSVQPFLQMPVPHPLPLNTRIPLPFPYSTPVPCPLVMESGATTAAMATVVPQIAPAAIYPPGMWVSMGSREATASACGQTFHRHSEYPENLQDVSHLGNSVSHCEEGSKKPQGTPSHGDSSNNNHKESHVTSQMKVATEKKNPVKDQVTTALEVNSNHSIKEEQVMLQGMTSQKNETSCTKKNYPGNPKKVVGLKDSVSHSTKEDSVTLQETVTQVNKTSPTLKKYPGILLKRPDLRSCVSSEQKEDPKTSQGKAALGEDNTNTFQQMTTLTTDASPSLEKDEGTGKSQGQKEEPNSFQASPLRKSKSYSMNKCPSKQLPPKQNIKQPQEVKPFEYMQPQGQAQGEKSFETKQQEKPLSYTPANWVCSLCKAVNRSWCKGCFKCAKGCAQLERKDFHPKPPHIKPRTWIQVYLVTYWQAAAAARNELREAGGVVYICGGSTHKWREALEPD
SIO_010081: LOC101991854
subclass of: SO_0000673
so part of: LOC101991854
location: complement(join(4595765..4595918,4613866..4614044,4614165..4615811))
location: region:4595765-4615811:-1
so has part: feature:4614165-4615811:-1:exon
so has part: feature:4613866-4614044:-1:exon
so has part: feature:4595765-4595918:-1:exon

XP_005358508.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4614165-4615811:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4613866-4614044:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4595765-4595918:-1:exon

LOC101980068
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC101980068
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(4771567..4771953)
location: region:4771567-4771953:-1
so has part: feature:4771567-4771953:-1:exon

101980068
type: Gene
SIO_000068: ncbigene

position:4771567:-1
position: 4771567
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4771953:-1
position: 4771953
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4771567-4771953:-1:exon

LOC101980068
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC101980068
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 45% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC101980068
subclass of: SO_0000673
so part of: LOC101980068
location: complement(4771567..4771953)
location: region:4771567-4771953:-1
so has part: feature:4771567-4771953:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4771567-4771953:-1:exon

Tenm1
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: Tenm1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4849621..5675231
location: region:4849621-5675231:1
so has part: feature:4849621-5675231:1:exon
subclass of: SO_0000010

101980640
type: Gene
SIO_000068: ncbigene

position:4849621:1
position: 4849621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5675231:1
position: 5675231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4849621-5675231:1:exon

Tenm1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Tenm1
product: teneurin transmembrane protein 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_026784949.1
SIO_010081: Tenm1
subclass of: SO_0000673
so part of: Tenm1
location: join(4849621..4849981,4866723..4866775,5084639..5084920,5167308..5167568,5169027..5169083,5314336..5314576,5350622..5350860,5377778..5377927,5403855..5404054,5405249..5405459,5409535..5409636,5411131..5411325,5414628..5414828,5497967..5498152,5500403..5500426,5502300..5502446,5512168..5512384,5531666..5531785,5537461..5537722,5540135..5540402,5555627..5555770,5561942..5562191,5570995..5571015,5576308..5576540,5604489..5604643,5629943..5630309,5631707..5632217,5644593..5644765,5645810..5646045,5657862..5658158,5664587..5664974,5665814..5667034,5667558..5667700,5669900..5675231)
location: region:4849621-5675231:1
so has part: feature:4849621-4849981:1:exon
so has part: feature:4866723-4866775:1:exon
so has part: feature:5084639-5084920:1:exon
so has part: feature:5167308-5167568:1:exon
so has part: feature:5169027-5169083:1:exon
so has part: feature:5314336-5314576:1:exon
so has part: feature:5350622-5350860:1:exon
so has part: feature:5377778-5377927:1:exon
so has part: feature:5403855-5404054:1:exon
so has part: feature:5405249-5405459:1:exon
so has part: feature:5409535-5409636:1:exon
so has part: feature:5411131-5411325:1:exon
so has part: feature:5414628-5414828:1:exon
so has part: feature:5497967-5498152:1:exon
so has part: feature:5500403-5500426:1:exon
so has part: feature:5502300-5502446:1:exon
so has part: feature:5512168-5512384:1:exon
so has part: feature:5531666-5531785:1:exon
so has part: feature:5537461-5537722:1:exon
so has part: feature:5540135-5540402:1:exon
so has part: feature:5555627-5555770:1:exon
so has part: feature:5561942-5562191:1:exon
so has part: feature:5570995-5571015:1:exon
so has part: feature:5576308-5576540:1:exon
so has part: feature:5604489-5604643:1:exon
so has part: feature:5629943-5630309:1:exon
so has part: feature:5631707-5632217:1:exon
so has part: feature:5644593-5644765:1:exon
so has part: feature:5645810-5646045:1:exon
so has part: feature:5657862-5658158:1:exon
so has part: feature:5664587-5664974:1:exon
so has part: feature:5665814-5667034:1:exon
so has part: feature:5667558-5667700:1:exon
so has part: feature:5669900-5675231:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4849621-4849981:1:exon

position:4849981:1
position: 4849981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4866723-4866775:1:exon

position:4866723:1
position: 4866723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4866775:1
position: 4866775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5084639-5084920:1:exon

position:5084639:1
position: 5084639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5084920:1
position: 5084920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5167308-5167568:1:exon

position:5167308:1
position: 5167308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5167568:1
position: 5167568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5169027-5169083:1:exon

position:5169027:1
position: 5169027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5169083:1
position: 5169083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5314336-5314576:1:exon

position:5314336:1
position: 5314336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5314576:1
position: 5314576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5350622-5350860:1:exon

position:5350622:1
position: 5350622
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5350860:1
position: 5350860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5377778-5377927:1:exon

position:5377778:1
position: 5377778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5377927:1
position: 5377927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:5403855-5404054:1:exon

position:5403855:1
position: 5403855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5404054:1
position: 5404054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:5405249-5405459:1:exon

position:5405249:1
position: 5405249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5405459:1
position: 5405459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:5409535-5409636:1:exon

position:5409535:1
position: 5409535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5409636:1
position: 5409636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:5411131-5411325:1:exon

position:5411131:1
position: 5411131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5411325:1
position: 5411325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:5414628-5414828:1:exon

position:5414628:1
position: 5414628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5414828:1
position: 5414828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:5497967-5498152:1:exon

position:5497967:1
position: 5497967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5498152:1
position: 5498152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:5500403-5500426:1:exon

position:5500403:1
position: 5500403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5500426:1
position: 5500426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:5502300-5502446:1:exon

position:5502300:1
position: 5502300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5502446:1
position: 5502446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:5512168-5512384:1:exon

position:5512168:1
position: 5512168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5512384:1
position: 5512384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:5531666-5531785:1:exon

position:5531666:1
position: 5531666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5531785:1
position: 5531785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:5537461-5537722:1:exon

position:5537461:1
position: 5537461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5537722:1
position: 5537722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:5540135-5540402:1:exon

position:5540135:1
position: 5540135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5540402:1
position: 5540402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:5555627-5555770:1:exon

position:5555627:1
position: 5555627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5555770:1
position: 5555770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:5561942-5562191:1:exon

position:5561942:1
position: 5561942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5562191:1
position: 5562191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:5570995-5571015:1:exon

position:5570995:1
position: 5570995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5571015:1
position: 5571015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:5576308-5576540:1:exon

position:5576308:1
position: 5576308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5576540:1
position: 5576540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:5604489-5604643:1:exon

position:5604489:1
position: 5604489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5604643:1
position: 5604643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:5629943-5630309:1:exon

position:5629943:1
position: 5629943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5630309:1
position: 5630309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:5631707-5632217:1:exon

position:5631707:1
position: 5631707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5632217:1
position: 5632217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:5644593-5644765:1:exon

position:5644593:1
position: 5644593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5644765:1
position: 5644765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:5645810-5646045:1:exon

position:5645810:1
position: 5645810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5646045:1
position: 5646045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:5657862-5658158:1:exon

position:5657862:1
position: 5657862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5658158:1
position: 5658158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:5664587-5664974:1:exon

position:5664587:1
position: 5664587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5664974:1
position: 5664974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 32
SIO_000628: feature:5665814-5667034:1:exon

position:5665814:1
position: 5665814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5667034:1
position: 5667034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 33
SIO_000628: feature:5667558-5667700:1:exon

position:5667558:1
position: 5667558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5667700:1
position: 5667700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 34
SIO_000628: feature:5669900-5675231:1:exon

position:5669900:1
position: 5669900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Tenm1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Tenm1
product: teneurin transmembrane protein 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_013350458.2
SIO_010081: Tenm1
subclass of: SO_0000673
so part of: Tenm1
location: join(4849621..4849981,4866723..4866775,5084639..5084920,5167308..5167568,5169027..5169083,5314336..5314576,5350622..5350860,5403855..5404054,5405249..5405459,5409535..5409636,5411131..5411325,5414628..5414828,5497967..5498152,5500403..5500426,5502300..5502446,5512168..5512384,5531666..5531785,5537461..5537722,5540135..5540402,5555627..5555770,5561942..5562191,5570995..5571015,5576308..5576540,5604489..5604643,5629943..5630309,5631707..5632217,5644593..5644765,5645810..5646045,5657862..5658158,5664587..5664974,5665814..5667034,5667558..5667700,5669900..5675231)
location: region:4849621-5675231:1
so has part: feature:4849621-4849981:1:exon
so has part: feature:4866723-4866775:1:exon
so has part: feature:5084639-5084920:1:exon
so has part: feature:5167308-5167568:1:exon
so has part: feature:5169027-5169083:1:exon
so has part: feature:5314336-5314576:1:exon
so has part: feature:5350622-5350860:1:exon
so has part: feature:5403855-5404054:1:exon
so has part: feature:5405249-5405459:1:exon
so has part: feature:5409535-5409636:1:exon
so has part: feature:5411131-5411325:1:exon
so has part: feature:5414628-5414828:1:exon
so has part: feature:5497967-5498152:1:exon
so has part: feature:5500403-5500426:1:exon
so has part: feature:5502300-5502446:1:exon
so has part: feature:5512168-5512384:1:exon
so has part: feature:5531666-5531785:1:exon
so has part: feature:5537461-5537722:1:exon
so has part: feature:5540135-5540402:1:exon
so has part: feature:5555627-5555770:1:exon
so has part: feature:5561942-5562191:1:exon
so has part: feature:5570995-5571015:1:exon
so has part: feature:5576308-5576540:1:exon
so has part: feature:5604489-5604643:1:exon
so has part: feature:5629943-5630309:1:exon
so has part: feature:5631707-5632217:1:exon
so has part: feature:5644593-5644765:1:exon
so has part: feature:5645810-5646045:1:exon
so has part: feature:5657862-5658158:1:exon
so has part: feature:5664587-5664974:1:exon
so has part: feature:5665814-5667034:1:exon
so has part: feature:5667558-5667700:1:exon
so has part: feature:5669900-5675231:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4849621-4849981:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4866723-4866775:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5084639-5084920:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5167308-5167568:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5169027-5169083:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5314336-5314576:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5350622-5350860:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5403855-5404054:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5405249-5405459:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5409535-5409636:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5411131-5411325:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5414628-5414828:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5497967-5498152:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5500403-5500426:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5502300-5502446:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5512168-5512384:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5531666-5531785:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5537461-5537722:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5540135-5540402:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5555627-5555770:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5561942-5562191:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:5570995-5571015:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:5576308-5576540:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:5604489-5604643:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:5629943-5630309:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:5631707-5632217:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:5644593-5644765:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:5645810-5646045:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:5657862-5658158:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:5664587-5664974:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:5665814-5667034:1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:5667558-5667700:1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:5669900-5675231:1:exon

Tenm1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Tenm1
product: teneurin transmembrane protein 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_026784950.1
SIO_010081: Tenm1
subclass of: SO_0000673
so part of: Tenm1
location: join(4985224..4985242,5084639..5084920,5167308..5167568,5169027..5169083,5314336..5314576,5350622..5350860,5377778..5377927,5403855..5404054,5405249..5405459,5409535..5409636,5411131..5411325,5414628..5414828,5497967..5498152,5500403..5500426,5502300..5502446,5512168..5512384,5531666..5531785,5537461..5537722,5540135..5540402,5555627..5555770,5561942..5562191,5570995..5571015,5576308..5576540,5604489..5604643,5629943..5630309,5631707..5632217,5644593..5644765,5645810..5646045,5657862..5658158,5664587..5664974,5665814..5667034,5667558..5667700,5669900..5675231)
location: region:4985224-5675231:1
so has part: feature:4985224-4985242:1:exon
so has part: feature:5084639-5084920:1:exon
so has part: feature:5167308-5167568:1:exon
so has part: feature:5169027-5169083:1:exon
so has part: feature:5314336-5314576:1:exon
so has part: feature:5350622-5350860:1:exon
so has part: feature:5377778-5377927:1:exon
so has part: feature:5403855-5404054:1:exon
so has part: feature:5405249-5405459:1:exon
so has part: feature:5409535-5409636:1:exon
so has part: feature:5411131-5411325:1:exon
so has part: feature:5414628-5414828:1:exon
so has part: feature:5497967-5498152:1:exon
so has part: feature:5500403-5500426:1:exon
so has part: feature:5502300-5502446:1:exon
so has part: feature:5512168-5512384:1:exon
so has part: feature:5531666-5531785:1:exon
so has part: feature:5537461-5537722:1:exon
so has part: feature:5540135-5540402:1:exon
so has part: feature:5555627-5555770:1:exon
so has part: feature:5561942-5562191:1:exon
so has part: feature:5570995-5571015:1:exon
so has part: feature:5576308-5576540:1:exon
so has part: feature:5604489-5604643:1:exon
so has part: feature:5629943-5630309:1:exon
so has part: feature:5631707-5632217:1:exon
so has part: feature:5644593-5644765:1:exon
so has part: feature:5645810-5646045:1:exon
so has part: feature:5657862-5658158:1:exon
so has part: feature:5664587-5664974:1:exon
so has part: feature:5665814-5667034:1:exon
so has part: feature:5667558-5667700:1:exon
so has part: feature:5669900-5675231:1:exon

position:4985224:1
position: 4985224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4985224-4985242:1:exon

position:4985242:1
position: 4985242
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5084639-5084920:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5167308-5167568:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5169027-5169083:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5314336-5314576:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5350622-5350860:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5377778-5377927:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5403855-5404054:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5405249-5405459:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5409535-5409636:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5411131-5411325:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5414628-5414828:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5497967-5498152:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5500403-5500426:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5502300-5502446:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5512168-5512384:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5531666-5531785:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5537461-5537722:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5540135-5540402:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5555627-5555770:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5561942-5562191:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:5570995-5571015:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:5576308-5576540:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:5604489-5604643:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:5629943-5630309:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:5631707-5632217:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:5644593-5644765:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:5645810-5646045:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:5657862-5658158:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:5664587-5664974:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:5665814-5667034:1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:5667558-5667700:1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:5669900-5675231:1:exon

LOC101992138
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC101992138
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(5027488..5028604)
location: region:5027488-5028604:-1
so has part: feature:5027488-5028604:-1:exon

101992138
type: Gene
SIO_000068: ncbigene

position:5027488:-1
position: 5027488
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5028604:-1
position: 5028604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5027488-5028604:-1:exon

LOC101992138
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC101992138
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
pseudo: true
SIO_010081: LOC101992138
subclass of: SO_0000673
so part of: LOC101992138
location: complement(5027488..5027620)
location: region:5027488-5027620:-1
so has part: feature:5027488-5027620:-1:exon

position:5027620:-1
position: 5027620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5027488-5027620:-1:exon

LOC101992138
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC101992138
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
pseudo: true
SIO_010081: LOC101992138
subclass of: SO_0000673
so part of: LOC101992138
location: complement(5028024..5028604)
location: region:5028024-5028604:-1
so has part: feature:5028024-5028604:-1:exon

position:5028024:-1
position: 5028024
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5028024-5028604:-1:exon

Tenm1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Tenm1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: teneurin-1 isoform X1
translation: MEQTDCKPYQPLSKVKHEMDLAYTSSSDESEDGRKARQAFNSRETLHEYNQELRRNYNSQSRKRKEVEKSTQEIEFCETPPTLCSGYQTDMHGVSRHGYQLDMGSDVDTETEGAASPDHALRMWIRGMKSEHSSCLSSRANSALSLTDTDHERKSDGENGFKFSPVCCDMEAPPGSTQDMQSSPHNQFTFRPLPPPPPPPHACTCARKPPPTVDSLQRRSMTTRSQPSPAAPAPPTSTQDSVHLHNSWVLNSNIPLETRHFLFKHGSGSSAIFSAASQNYPLTSNTVYSPPPRPLPRSTFARPAFTFNKPYRCCNWKCTALSATAITVTLALLLAYVIAVHLFGLTWQLQPVGQIYANGISNGNTGTESMDTTYSPIGGKVSDKSEKKVFQKGRAIDTGEVDIGAQVMQTIPPGLFWRFQITIHHPIYLKFNISLAKDSLLGIYGRRNIPPTHTQFDFVKLMDGKQLVKQDSKSSDDIQHSPRNLILTSLQETGFIEYMDQGPWYLAFYNDGKKMEQVFVLTTAIEIMDDCSTNCNGNGECISGHCHCFPGFLGPDCARDSCPVLCGGNGEYEKGHCVCRNGWKGPECDVPEEQCIDPTCFGHGTCIMGVCICVPGYKGEICEEEDCLDPMCSGHGICVKGECHCSTGWGGVNCETPLPICQEQCSGHGTFLLDTGVCSCDPKWTGPDCSTELCTMECGSHGVCSRGICQCEEGWVGPTCEERSCHSHCAEHGQCKDGKCECSPGWEGDHCTIAHYLDAVRDGCPGLCFGNGRCTLDQNGWHCVCQVGWSGTGCNIVMEMLCGDNLDNDGDGLTDCVDPDCCQQSNCYVSPLCQGSPDPLDLIQQSQPLFSQHTSRLFYDRIKFLIGKDSTHVIPQEVSFDSRRACVIRGQVVAVDGTPLVGVNVSFLHHSDYGFTISRQDGSFDLVAIGGISVVLLFDRSPFLSEKRTLWLPWNQFIVVEKVIMQRITADSPSCDISNFISPNPIVLPSPLTSFGGSCPERGTIVPELQVVQEEIPIPSSFVRLSYLSSRTPGYKTLLRIILTHSTIPVGMIKVHLTVAVEGRLTQKWFPAAINLVYTFAWNKTDIYGQKVWGLTEALVSVGYEYEMCPNFILWEQRTVVLQGFEMDASNLGGWSLNKHHIFNPQSGIIHKGNGENMFISQQPPVISTIMGNGHQRSVACTNCNGPAHNNKLFAPVALASGPDGSVYVGDFNFVRRIFPSGNSVSILELRNRDTRHSTSPAHKYYLAMDPMSESLYLSDTNTRKVYKLKSLVETKDLTKNFEVVAGTGDQCLPFDQSHCGDGGKASEASLNSPRGITVDKNGFIYFVDGTMIRRIDENALITTVIGSNGLTSTQPLSCDSGMDITQVRLEWPTDLTVNPMDNSLYVLDNNIVLQISENRRVRIIAGRPIHCQVPGIDHFLVSKVAIHSTLESARAISVSHSGLLFIAETDERKVNRIQQVTTNGEISIIAGAPTDCDCKIDPNCDCFSGDGGYAKDAKMKAPSSLAVSPDGTLYVADLGNVRIRTISRNQAHLNDMNVYEIASPADQELYQFTVNGTHLHTMNLITRDYVYNFTYNADGDLGAITSSNGNSVHIRRDAGGMPLWLVVPGGQVYWLTISSNGVLKRVSAQGYNLALMTYPGNTGLLATKSNENGWTTVYEYDPEGHLTNATFPTGEVSSFHSDLEKLTKVELDTSNRENVLMSTNLTATSTIYILKQENTQSTYRVSPDGSLRVTFASGMEISLSSEPHILAGAVNPTLGKCNISLPGEHNANLIEWRQRKEQNKGNVSAFERRLRAHNRNLLSIDFDHMTRTGKIYDDHRKFTLRILYDQAGRPILWSPVSRYNEVNITYSPSGLVTFIQRGTWNEKMEYDQSGKIISRTWADGKIWSYTYLEKSVMLLLHSQRRYIFEYDQSDCLLSVTMPSMVRHSLQTMLSVGYYRNIYTPPDSSTSLIQDYSRDGRLLQTLHLGTGRRVLYKYTKQARLSEILYDTTQVTLTYEE…
SIO_010081: Tenm1
subclass of: SO_0000673
so part of: Tenm1
location: join(5084704..5084920,5167308..5167568,5169027..5169083,5314336..5314576,5350622..5350860,5377778..5377927,5403855..5404054,5405249..5405459,5409535..5409636,5411131..5411325,5414628..5414828,5497967..5498152,5500403..5500426,5502300..5502446,5512168..5512384,5531666..5531785,5537461..5537722,5540135..5540402,5555627..5555770,5561942..5562191,5570995..5571015,5576308..5576540,5604489..5604643,5629943..5630309,5631707..5632217,5644593..5644765,5645810..5646045,5657862..5658158,5664587..5664974,5665814..5667034,5667558..5667700,5669900..5670658)
location: region:5084704-5670658:1
so has part: feature:5084704-5084920:1:exon
so has part: feature:5167308-5167568:1:exon
so has part: feature:5169027-5169083:1:exon
so has part: feature:5314336-5314576:1:exon
so has part: feature:5350622-5350860:1:exon
so has part: feature:5377778-5377927:1:exon
so has part: feature:5403855-5404054:1:exon
so has part: feature:5405249-5405459:1:exon
so has part: feature:5409535-5409636:1:exon
so has part: feature:5411131-5411325:1:exon
so has part: feature:5414628-5414828:1:exon
so has part: feature:5497967-5498152:1:exon
so has part: feature:5500403-5500426:1:exon
so has part: feature:5502300-5502446:1:exon
so has part: feature:5512168-5512384:1:exon
so has part: feature:5531666-5531785:1:exon
so has part: feature:5537461-5537722:1:exon
so has part: feature:5540135-5540402:1:exon
so has part: feature:5555627-5555770:1:exon
so has part: feature:5561942-5562191:1:exon
so has part: feature:5570995-5571015:1:exon
so has part: feature:5576308-5576540:1:exon
so has part: feature:5604489-5604643:1:exon
so has part: feature:5629943-5630309:1:exon
so has part: feature:5631707-5632217:1:exon
so has part: feature:5644593-5644765:1:exon
so has part: feature:5645810-5646045:1:exon
so has part: feature:5657862-5658158:1:exon
so has part: feature:5664587-5664974:1:exon
so has part: feature:5665814-5667034:1:exon
so has part: feature:5667558-5667700:1:exon
so has part: feature:5669900-5670658:1:exon

XP_026640750.1
type: Protein
SIO_000068: ncbiprotein

position:5084704:1
position: 5084704
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5670658:1
position: 5670658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5084704-5084920:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5167308-5167568:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5169027-5169083:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5314336-5314576:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5350622-5350860:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5377778-5377927:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5403855-5404054:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5405249-5405459:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5409535-5409636:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5411131-5411325:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5414628-5414828:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5497967-5498152:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5500403-5500426:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5502300-5502446:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5512168-5512384:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5531666-5531785:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5537461-5537722:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5540135-5540402:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5555627-5555770:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5561942-5562191:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5570995-5571015:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:5576308-5576540:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:5604489-5604643:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:5629943-5630309:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:5631707-5632217:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:5644593-5644765:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:5645810-5646045:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:5657862-5658158:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:5664587-5664974:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:5665814-5667034:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:5667558-5667700:1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:5669900-5670658:1:exon

Tenm1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Tenm1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: teneurin-1 isoform X1
translation: MEQTDCKPYQPLSKVKHEMDLAYTSSSDESEDGRKARQAFNSRETLHEYNQELRRNYNSQSRKRKEVEKSTQEIEFCETPPTLCSGYQTDMHGVSRHGYQLDMGSDVDTETEGAASPDHALRMWIRGMKSEHSSCLSSRANSALSLTDTDHERKSDGENGFKFSPVCCDMEAPPGSTQDMQSSPHNQFTFRPLPPPPPPPHACTCARKPPPTVDSLQRRSMTTRSQPSPAAPAPPTSTQDSVHLHNSWVLNSNIPLETRHFLFKHGSGSSAIFSAASQNYPLTSNTVYSPPPRPLPRSTFARPAFTFNKPYRCCNWKCTALSATAITVTLALLLAYVIAVHLFGLTWQLQPVGQIYANGISNGNTGTESMDTTYSPIGGKVSDKSEKKVFQKGRAIDTGEVDIGAQVMQTIPPGLFWRFQITIHHPIYLKFNISLAKDSLLGIYGRRNIPPTHTQFDFVKLMDGKQLVKQDSKSSDDIQHSPRNLILTSLQETGFIEYMDQGPWYLAFYNDGKKMEQVFVLTTAIEIMDDCSTNCNGNGECISGHCHCFPGFLGPDCARDSCPVLCGGNGEYEKGHCVCRNGWKGPECDVPEEQCIDPTCFGHGTCIMGVCICVPGYKGEICEEEDCLDPMCSGHGICVKGECHCSTGWGGVNCETPLPICQEQCSGHGTFLLDTGVCSCDPKWTGPDCSTELCTMECGSHGVCSRGICQCEEGWVGPTCEERSCHSHCAEHGQCKDGKCECSPGWEGDHCTIAHYLDAVRDGCPGLCFGNGRCTLDQNGWHCVCQVGWSGTGCNIVMEMLCGDNLDNDGDGLTDCVDPDCCQQSNCYVSPLCQGSPDPLDLIQQSQPLFSQHTSRLFYDRIKFLIGKDSTHVIPQEVSFDSRRACVIRGQVVAVDGTPLVGVNVSFLHHSDYGFTISRQDGSFDLVAIGGISVVLLFDRSPFLSEKRTLWLPWNQFIVVEKVIMQRITADSPSCDISNFISPNPIVLPSPLTSFGGSCPERGTIVPELQVVQEEIPIPSSFVRLSYLSSRTPGYKTLLRIILTHSTIPVGMIKVHLTVAVEGRLTQKWFPAAINLVYTFAWNKTDIYGQKVWGLTEALVSVGYEYEMCPNFILWEQRTVVLQGFEMDASNLGGWSLNKHHIFNPQSGIIHKGNGENMFISQQPPVISTIMGNGHQRSVACTNCNGPAHNNKLFAPVALASGPDGSVYVGDFNFVRRIFPSGNSVSILELRNRDTRHSTSPAHKYYLAMDPMSESLYLSDTNTRKVYKLKSLVETKDLTKNFEVVAGTGDQCLPFDQSHCGDGGKASEASLNSPRGITVDKNGFIYFVDGTMIRRIDENALITTVIGSNGLTSTQPLSCDSGMDITQVRLEWPTDLTVNPMDNSLYVLDNNIVLQISENRRVRIIAGRPIHCQVPGIDHFLVSKVAIHSTLESARAISVSHSGLLFIAETDERKVNRIQQVTTNGEISIIAGAPTDCDCKIDPNCDCFSGDGGYAKDAKMKAPSSLAVSPDGTLYVADLGNVRIRTISRNQAHLNDMNVYEIASPADQELYQFTVNGTHLHTMNLITRDYVYNFTYNADGDLGAITSSNGNSVHIRRDAGGMPLWLVVPGGQVYWLTISSNGVLKRVSAQGYNLALMTYPGNTGLLATKSNENGWTTVYEYDPEGHLTNATFPTGEVSSFHSDLEKLTKVELDTSNRENVLMSTNLTATSTIYILKQENTQSTYRVSPDGSLRVTFASGMEISLSSEPHILAGAVNPTLGKCNISLPGEHNANLIEWRQRKEQNKGNVSAFERRLRAHNRNLLSIDFDHMTRTGKIYDDHRKFTLRILYDQAGRPILWSPVSRYNEVNITYSPSGLVTFIQRGTWNEKMEYDQSGKIISRTWADGKIWSYTYLEKSVMLLLHSQRRYIFEYDQSDCLLSVTMPSMVRHSLQTMLSVGYYRNIYTPPDSSTSLIQDYSRDGRLLQTLHLGTGRRVLYKYTKQARLSEILYDTTQVTLTYEE…
SIO_010081: Tenm1
subclass of: SO_0000673
so part of: Tenm1
location: join(5084704..5084920,5167308..5167568,5169027..5169083,5314336..5314576,5350622..5350860,5377778..5377927,5403855..5404054,5405249..5405459,5409535..5409636,5411131..5411325,5414628..5414828,5497967..5498152,5500403..5500426,5502300..5502446,5512168..5512384,5531666..5531785,5537461..5537722,5540135..5540402,5555627..5555770,5561942..5562191,5570995..5571015,5576308..5576540,5604489..5604643,5629943..5630309,5631707..5632217,5644593..5644765,5645810..5646045,5657862..5658158,5664587..5664974,5665814..5667034,5667558..5667700,5669900..5670658)
location: region:5084704-5670658:1
so has part: feature:5084704-5084920:1:exon
so has part: feature:5167308-5167568:1:exon
so has part: feature:5169027-5169083:1:exon
so has part: feature:5314336-5314576:1:exon
so has part: feature:5350622-5350860:1:exon
so has part: feature:5377778-5377927:1:exon
so has part: feature:5403855-5404054:1:exon
so has part: feature:5405249-5405459:1:exon
so has part: feature:5409535-5409636:1:exon
so has part: feature:5411131-5411325:1:exon
so has part: feature:5414628-5414828:1:exon
so has part: feature:5497967-5498152:1:exon
so has part: feature:5500403-5500426:1:exon
so has part: feature:5502300-5502446:1:exon
so has part: feature:5512168-5512384:1:exon
so has part: feature:5531666-5531785:1:exon
so has part: feature:5537461-5537722:1:exon
so has part: feature:5540135-5540402:1:exon
so has part: feature:5555627-5555770:1:exon
so has part: feature:5561942-5562191:1:exon
so has part: feature:5570995-5571015:1:exon
so has part: feature:5576308-5576540:1:exon
so has part: feature:5604489-5604643:1:exon
so has part: feature:5629943-5630309:1:exon
so has part: feature:5631707-5632217:1:exon
so has part: feature:5644593-5644765:1:exon
so has part: feature:5645810-5646045:1:exon
so has part: feature:5657862-5658158:1:exon
so has part: feature:5664587-5664974:1:exon
so has part: feature:5665814-5667034:1:exon
so has part: feature:5667558-5667700:1:exon
so has part: feature:5669900-5670658:1:exon

XP_026640751.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5084704-5084920:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5167308-5167568:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5169027-5169083:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5314336-5314576:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5350622-5350860:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5377778-5377927:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5403855-5404054:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5405249-5405459:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5409535-5409636:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5411131-5411325:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5414628-5414828:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5497967-5498152:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5500403-5500426:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5502300-5502446:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5512168-5512384:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5531666-5531785:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5537461-5537722:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5540135-5540402:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5555627-5555770:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5561942-5562191:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5570995-5571015:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:5576308-5576540:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:5604489-5604643:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:5629943-5630309:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:5631707-5632217:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:5644593-5644765:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:5645810-5646045:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:5657862-5658158:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:5664587-5664974:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:5665814-5667034:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:5667558-5667700:1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:5669900-5670658:1:exon

Tenm1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Tenm1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: teneurin-1 isoform X2
translation: MEQTDCKPYQPLSKVKHEMDLAYTSSSDESEDGRKARQAFNSRETLHEYNQELRRNYNSQSRKRKEVEKSTQEIEFCETPPTLCSGYQTDMHGVSRHGYQLDMGSDVDTETEGAASPDHALRMWIRGMKSEHSSCLSSRANSALSLTDTDHERKSDGENGFKFSPVCCDMEAPPGSTQDMQSSPHNQFTFRPLPPPPPPPHACTCARKPPPTVDSLQRRSMTTRSQPSPAAPAPPTSTQDSVHLHNSWVLNSNIPLETRHFLFKHGSGSSAIFSAASQNYPLTSNTVYSPPPRPLPRSTFARPAFTFNKPYRCCNWKCTALSATAITVTLALLLAYVIVFQKGRAIDTGEVDIGAQVMQTIPPGLFWRFQITIHHPIYLKFNISLAKDSLLGIYGRRNIPPTHTQFDFVKLMDGKQLVKQDSKSSDDIQHSPRNLILTSLQETGFIEYMDQGPWYLAFYNDGKKMEQVFVLTTAIEIMDDCSTNCNGNGECISGHCHCFPGFLGPDCARDSCPVLCGGNGEYEKGHCVCRNGWKGPECDVPEEQCIDPTCFGHGTCIMGVCICVPGYKGEICEEEDCLDPMCSGHGICVKGECHCSTGWGGVNCETPLPICQEQCSGHGTFLLDTGVCSCDPKWTGPDCSTELCTMECGSHGVCSRGICQCEEGWVGPTCEERSCHSHCAEHGQCKDGKCECSPGWEGDHCTIAHYLDAVRDGCPGLCFGNGRCTLDQNGWHCVCQVGWSGTGCNIVMEMLCGDNLDNDGDGLTDCVDPDCCQQSNCYVSPLCQGSPDPLDLIQQSQPLFSQHTSRLFYDRIKFLIGKDSTHVIPQEVSFDSRRACVIRGQVVAVDGTPLVGVNVSFLHHSDYGFTISRQDGSFDLVAIGGISVVLLFDRSPFLSEKRTLWLPWNQFIVVEKVIMQRITADSPSCDISNFISPNPIVLPSPLTSFGGSCPERGTIVPELQVVQEEIPIPSSFVRLSYLSSRTPGYKTLLRIILTHSTIPVGMIKVHLTVAVEGRLTQKWFPAAINLVYTFAWNKTDIYGQKVWGLTEALVSVGYEYEMCPNFILWEQRTVVLQGFEMDASNLGGWSLNKHHIFNPQSGIIHKGNGENMFISQQPPVISTIMGNGHQRSVACTNCNGPAHNNKLFAPVALASGPDGSVYVGDFNFVRRIFPSGNSVSILELRNRDTRHSTSPAHKYYLAMDPMSESLYLSDTNTRKVYKLKSLVETKDLTKNFEVVAGTGDQCLPFDQSHCGDGGKASEASLNSPRGITVDKNGFIYFVDGTMIRRIDENALITTVIGSNGLTSTQPLSCDSGMDITQVRLEWPTDLTVNPMDNSLYVLDNNIVLQISENRRVRIIAGRPIHCQVPGIDHFLVSKVAIHSTLESARAISVSHSGLLFIAETDERKVNRIQQVTTNGEISIIAGAPTDCDCKIDPNCDCFSGDGGYAKDAKMKAPSSLAVSPDGTLYVADLGNVRIRTISRNQAHLNDMNVYEIASPADQELYQFTVNGTHLHTMNLITRDYVYNFTYNADGDLGAITSSNGNSVHIRRDAGGMPLWLVVPGGQVYWLTISSNGVLKRVSAQGYNLALMTYPGNTGLLATKSNENGWTTVYEYDPEGHLTNATFPTGEVSSFHSDLEKLTKVELDTSNRENVLMSTNLTATSTIYILKQENTQSTYRVSPDGSLRVTFASGMEISLSSEPHILAGAVNPTLGKCNISLPGEHNANLIEWRQRKEQNKGNVSAFERRLRAHNRNLLSIDFDHMTRTGKIYDDHRKFTLRILYDQAGRPILWSPVSRYNEVNITYSPSGLVTFIQRGTWNEKMEYDQSGKIISRTWADGKIWSYTYLEKSVMLLLHSQRRYIFEYDQSDCLLSVTMPSMVRHSLQTMLSVGYYRNIYTPPDSSTSLIQDYSRDGRLLQTLHLGTGRRVLYKYTKQARLSEILYDTTQVTLTYEESSGVIKTIHLMHDGFICTIRYRQTGPLIGRQIFRFSEEGLVNARFDYSYN…
SIO_010081: Tenm1
subclass of: SO_0000673
so part of: Tenm1
location: join(5084704..5084920,5167308..5167568,5169027..5169083,5314336..5314576,5350622..5350860,5403855..5404054,5405249..5405459,5409535..5409636,5411131..5411325,5414628..5414828,5497967..5498152,5500403..5500426,5502300..5502446,5512168..5512384,5531666..5531785,5537461..5537722,5540135..5540402,5555627..5555770,5561942..5562191,5570995..5571015,5576308..5576540,5604489..5604643,5629943..5630309,5631707..5632217,5644593..5644765,5645810..5646045,5657862..5658158,5664587..5664974,5665814..5667034,5667558..5667700,5669900..5670658)
location: region:5084704-5670658:1
so has part: feature:5084704-5084920:1:exon
so has part: feature:5167308-5167568:1:exon
so has part: feature:5169027-5169083:1:exon
so has part: feature:5314336-5314576:1:exon
so has part: feature:5350622-5350860:1:exon
so has part: feature:5403855-5404054:1:exon
so has part: feature:5405249-5405459:1:exon
so has part: feature:5409535-5409636:1:exon
so has part: feature:5411131-5411325:1:exon
so has part: feature:5414628-5414828:1:exon
so has part: feature:5497967-5498152:1:exon
so has part: feature:5500403-5500426:1:exon
so has part: feature:5502300-5502446:1:exon
so has part: feature:5512168-5512384:1:exon
so has part: feature:5531666-5531785:1:exon
so has part: feature:5537461-5537722:1:exon
so has part: feature:5540135-5540402:1:exon
so has part: feature:5555627-5555770:1:exon
so has part: feature:5561942-5562191:1:exon
so has part: feature:5570995-5571015:1:exon
so has part: feature:5576308-5576540:1:exon
so has part: feature:5604489-5604643:1:exon
so has part: feature:5629943-5630309:1:exon
so has part: feature:5631707-5632217:1:exon
so has part: feature:5644593-5644765:1:exon
so has part: feature:5645810-5646045:1:exon
so has part: feature:5657862-5658158:1:exon
so has part: feature:5664587-5664974:1:exon
so has part: feature:5665814-5667034:1:exon
so has part: feature:5667558-5667700:1:exon
so has part: feature:5669900-5670658:1:exon

XP_013205912.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5084704-5084920:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5167308-5167568:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5169027-5169083:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5314336-5314576:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5350622-5350860:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5403855-5404054:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5405249-5405459:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5409535-5409636:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5411131-5411325:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5414628-5414828:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5497967-5498152:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5500403-5500426:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5502300-5502446:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5512168-5512384:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5531666-5531785:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5537461-5537722:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5540135-5540402:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5555627-5555770:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5561942-5562191:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5570995-5571015:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5576308-5576540:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:5604489-5604643:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:5629943-5630309:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:5631707-5632217:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:5644593-5644765:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:5645810-5646045:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:5657862-5658158:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:5664587-5664974:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:5665814-5667034:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:5667558-5667700:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:5669900-5670658:1:exon

Sh2d1a
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: Sh2d1a
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5682442..5707434)
location: region:5682442-5707434:-1
so has part: feature:5682442-5707434:-1:exon
subclass of: SO_0000010

101980912
type: Gene
SIO_000068: ncbigene

position:5682442:-1
position: 5682442
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5707434:-1
position: 5707434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5682442-5707434:-1:exon

Sh2d1a
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Sh2d1a
product: SH2 domain containing 1A
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
transcript id: XM_026784895.1
SIO_010081: Sh2d1a
subclass of: SO_0000673
so part of: Sh2d1a
location: complement(join(5682442..5682479,5683468..5683600,5688574..5688637,5707298..5707434))
location: region:5682442-5707434:-1
so has part: feature:5707298-5707434:-1:exon
so has part: feature:5688574-5688637:-1:exon
so has part: feature:5683468-5683600:-1:exon
so has part: feature:5682442-5682479:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5707298-5707434:-1:exon

position:5707298:-1
position: 5707298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5688574-5688637:-1:exon

position:5688574:-1
position: 5688574
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5688637:-1
position: 5688637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5683468-5683600:-1:exon

position:5683468:-1
position: 5683468
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5683600:-1
position: 5683600
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5682442-5682479:-1:exon

position:5682479:-1
position: 5682479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Sh2d1a
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Sh2d1a
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SH2 domain-containing protein 1A
translation: MDAVTVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYQGYIYTYRVSQTETGSWSAETAPGVHKRFFRKIKNLISAFQKPDQGIVIPLQYPVEKSSVRSTQGRSDSDVCLKAP
SIO_010081: Sh2d1a
subclass of: SO_0000673
so part of: Sh2d1a
location: complement(join(5682442..5682479,5683468..5683600,5688574..5688637,5707298..5707434))
location: region:5682442-5707434:-1
so has part: feature:5707298-5707434:-1:exon
so has part: feature:5688574-5688637:-1:exon
so has part: feature:5683468-5683600:-1:exon
so has part: feature:5682442-5682479:-1:exon

XP_026640696.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5707298-5707434:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5688574-5688637:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5683468-5683600:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5682442-5682479:-1:exon

Stag2
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: Stag2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5912696..6041930)
location: region:5912696-6041930:-1
so has part: feature:5912696-6041930:-1:exon
subclass of: SO_0000010

101981571
type: Gene
SIO_000068: ncbigene

position:5912696:-1
position: 5912696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6041930:-1
position: 6041930
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5912696-6041930:-1:exon

Stag2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Stag2
product: stromal antigen 2, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
transcript id: XM_026784746.1
SIO_010081: Stag2
subclass of: SO_0000673
so part of: Stag2
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urn:…
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urn:…
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urn:…
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urn:…
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urn:…
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urn:…
SIO_000300: 14
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urn:…
SIO_000300: 15
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urn:…
SIO_000300: 16
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urn:…
SIO_000300: 17
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urn:…
SIO_000300: 18
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urn:…
SIO_000300: 19
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SIO_000300: 20
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SIO_000300: 21
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SIO_000300: 30
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SIO_000300: 31
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SIO_000300: 32
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Stag2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Stag2
product: stromal antigen 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
transcript id: XM_026784744.1
SIO_010081: Stag2
subclass of: SO_0000673
so part of: Stag2
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location: region:5912696-5992060:-1
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urn:…
SIO_000300: 1
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urn:…
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urn:…
SIO_000300: 33
SIO_000628: feature:5912696-5914617:-1:exon

Stag2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Stag2
product: stromal antigen 2, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
transcript id: XM_013350460.2
SIO_010081: Stag2
subclass of: SO_0000673
so part of: Stag2
location: complement(join(5914594..5914617,5916272..5916349,5917782..5917908,5920810..5920920,5921009..5921198,5923938..5924161,5927259..5927387,5929142..5929290,5931230..5931331,5933654..5933793,5938047..5938221,5939168..5939260,5942231..5942311,5942417..5942504,5942722..5942792,5944714..5944917,5945609..5945698,5945819..5945911,5951669..5951772,5952395..5952512,5954040..5954151,5954827..5954934,5958461..5958540,5958624..5958722,5959687..5959810,5961117..5961190,5963629..5963780,5965410..5965614,5967615..5967691,5969954..5970050,5977755..5977919,5984919..5984997,5992017..5992156,6041659..6041930))
location: region:5914594-6041930:-1
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urn:…
SIO_000300: 1
SIO_000628: feature:6041659-6041930:-1:exon

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urn:…
SIO_000300: 2
SIO_000628: feature:5992017-5992156:-1:exon

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Stag2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Stag2
product: stromal antigen 2, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XM_013350461.2
SIO_010081: Stag2
subclass of: SO_0000673
so part of: Stag2
location: complement(join(5914594..5914617,5916272..5916349,5917782..5917908,5920810..5920920,5921009..5921198,5923938..5924161,5927259..5927387,5929142..5929290,5931230..5931331,5933654..5933793,5938047..5938221,5939168..5939260,5942231..5942311,5942417..5942504,5942722..5942792,5944714..5944917,5945609..5945698,5945819..5945911,5951669..5951772,5952395..5952512,5954040..5954151,5954827..5954934,5958461..5958540,5958624..5958722,5959687..5959810,5961117..5961190,5963629..5963780,5965410..5965614,5967615..5967691,5969954..5970050,5977755..5977919,5984919..5984997,5992017..5992156,6041056..6041461))
location: region:5914594-6041461:-1
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position:6041461:-1
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Stag2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Stag2
product: stromal antigen 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_013350459.2
SIO_010081: Stag2
subclass of: SO_0000673
so part of: Stag2
location: complement(join(5914594..5914617,5916272..5916349,5917782..5917908,5920810..5920920,5921009..5921198,5923938..5924161,5927259..5927387,5929142..5929290,5931230..5931331,5933654..5933793,5938047..5938221,5939168..5939260,5942231..5942311,5942417..5942504,5942722..5942792,5944714..5944917,5945609..5945698,5945819..5945911,5951669..5951772,5952395..5952512,5954040..5954151,5954827..5954934,5958461..5958540,5958624..5958722,5959687..5959810,5961117..5961190,5963629..5963780,5965410..5965614,5967615..5967691,5969954..5970050,5977755..5977919,5984919..5984997,5992017..5992156,6040567..6040701,6041056..6041461))
location: region:5914594-6041461:-1
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Stag2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Stag2
product: stromal antigen 2, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_026784745.1
SIO_010081: Stag2
subclass of: SO_0000673
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location: region:5914594-6041461:-1
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urn:…
SIO_000300: 26
SIO_000628: feature:5938047-5938221:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:5933654-5933793:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:5931230-5931331:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:5929142-5929290:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:5927259-5927387:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:5923938-5924161:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:5921009-5921198:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:5920810-5920920:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:5917782-5917908:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:5916272-5916349:-1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:5914594-5914617:-1:exon

Stag2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Stag2
product: stromal antigen 2, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XM_005358424.3
SIO_010081: Stag2
subclass of: SO_0000673
so part of: Stag2
location: complement(join(5914594..5914617,5916272..5916349,5917782..5917908,5920810..5920920,5921009..5921198,5923938..5924161,5927259..5927387,5929142..5929290,5931230..5931331,5933654..5933793,5938047..5938221,5939168..5939260,5942231..5942311,5942417..5942504,5942722..5942792,5944714..5944917,5945609..5945698,5945819..5945911,5951669..5951772,5952395..5952512,5954040..5954151,5954827..5954934,5958461..5958540,5958624..5958722,5959687..5959810,5961117..5961190,5963629..5963780,5965410..5965614,5967615..5967691,5969954..5970050,5977755..5977919,5984919..5984997,5992017..5992156,6038962..6039144))
location: region:5914594-6039144:-1
so has part: feature:6038962-6039144:-1:exon
so has part: feature:5992017-5992156:-1:exon
so has part: feature:5984919-5984997:-1:exon
so has part: feature:5977755-5977919:-1:exon
so has part: feature:5969954-5970050:-1:exon
so has part: feature:5967615-5967691:-1:exon
so has part: feature:5965410-5965614:-1:exon
so has part: feature:5963629-5963780:-1:exon
so has part: feature:5961117-5961190:-1:exon
so has part: feature:5959687-5959810:-1:exon
so has part: feature:5958624-5958722:-1:exon
so has part: feature:5958461-5958540:-1:exon
so has part: feature:5954827-5954934:-1:exon
so has part: feature:5954040-5954151:-1:exon
so has part: feature:5952395-5952512:-1:exon
so has part: feature:5951669-5951772:-1:exon
so has part: feature:5945819-5945911:-1:exon
so has part: feature:5945609-5945698:-1:exon
so has part: feature:5944714-5944917:-1:exon
so has part: feature:5942722-5942792:-1:exon
so has part: feature:5942417-5942504:-1:exon
so has part: feature:5942231-5942311:-1:exon
so has part: feature:5939168-5939260:-1:exon
so has part: feature:5938047-5938221:-1:exon
so has part: feature:5933654-5933793:-1:exon
so has part: feature:5931230-5931331:-1:exon
so has part: feature:5929142-5929290:-1:exon
so has part: feature:5927259-5927387:-1:exon
so has part: feature:5923938-5924161:-1:exon
so has part: feature:5921009-5921198:-1:exon
so has part: feature:5920810-5920920:-1:exon
so has part: feature:5917782-5917908:-1:exon
so has part: feature:5916272-5916349:-1:exon
so has part: feature:5914594-5914617:-1:exon

position:6039144:-1
position: 6039144
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6038962-6039144:-1:exon

position:6038962:-1
position: 6038962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5992017-5992156:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5984919-5984997:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5977755-5977919:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5969954-5970050:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5967615-5967691:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5965410-5965614:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5963629-5963780:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5961117-5961190:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5959687-5959810:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5958624-5958722:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5958461-5958540:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5954827-5954934:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5954040-5954151:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5952395-5952512:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5951669-5951772:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5945819-5945911:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5945609-5945698:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5944714-5944917:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5942722-5942792:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5942417-5942504:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:5942231-5942311:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:5939168-5939260:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:5938047-5938221:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:5933654-5933793:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:5931230-5931331:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:5929142-5929290:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:5927259-5927387:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:5923938-5924161:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:5921009-5921198:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:5920810-5920920:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:5917782-5917908:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:5916272-5916349:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:5914594-5914617:-1:exon

Stag2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Stag2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cohesin subunit SA-2 isoform X2
translation: MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKSKSGNGGGKPPSGPNRMNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKGVVTAEMFRHMQNSEIIRKMTEEFDEDSGDYPLTMAGPQWKKFKSSFCEFIGVLVRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMIGKRANERLELLLQKRKELQENQDEIENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYNKELNSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGIMKRRGRQGPNANLVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEDPLSGEEALTDRQESALIEIMLCTIRQAAECHPPVGRGTGKRVLTAKEKKTQLDDRTKITELFAVALPQLLAKYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLEACSKTYHALCNEEFTIFNRVDISRSQLIDELADKFNRLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNAHDLSKWDLFACNYKLLKTGIENGDMPEQIVIHALQCTHYVILWQLAKITESSSTKEDLLRLKKQMRVFCQICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMSGGRDMLEPLVYTPDSSLQSELLSFILDHVFIEQDDDSNSADGQQEDEASKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDIIKETMSKTRQIDKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTFGLDQLKTREAIAMLHKDGIEFAFKEPNPQGESHPPLNLAFLDILSEFSSKLLRQDKRTVYVYLEKFMTFQMSLRREDVWLPLMSYRNSLLAGGDDDTMSVISGMSSRGSTVRSKKSKPSTGKRKVVEGMQLALPEESSSSDSMWLSREQTLHTPVMMQTPQLTSTIMREPKRLRPEDSFMSVYPMQTEHHQTPLDYNRRGTSLMEDDEEPIVEDVMMSSEGRIEDLNEGMDFDTMDIDLPPSKNRRERTELKPDFFDPASIMDESVLGVSMF
SIO_010081: Stag2
subclass of: SO_0000673
so part of: Stag2
location: complement(join(5914594..5914617,5916272..5916349,5917782..5917908,5921009..5921198,5923938..5924161,5927259..5927387,5929142..5929290,5931230..5931331,5933654..5933793,5938047..5938221,5939168..5939260,5942231..5942311,5942417..5942504,5942722..5942792,5944714..5944917,5945609..5945698,5945819..5945911,5951669..5951772,5952395..5952512,5954040..5954151,5954827..5954934,5958461..5958540,5958624..5958722,5959687..5959810,5961117..5961190,5963629..5963780,5965410..5965614,5967615..5967691,5969954..5970050,5977755..5977919,5984919..5984997,5992017..5992060))
location: region:5914594-5992060:-1
so has part: feature:5992017-5992060:-1:exon
so has part: feature:5984919-5984997:-1:exon
so has part: feature:5977755-5977919:-1:exon
so has part: feature:5969954-5970050:-1:exon
so has part: feature:5967615-5967691:-1:exon
so has part: feature:5965410-5965614:-1:exon
so has part: feature:5963629-5963780:-1:exon
so has part: feature:5961117-5961190:-1:exon
so has part: feature:5959687-5959810:-1:exon
so has part: feature:5958624-5958722:-1:exon
so has part: feature:5958461-5958540:-1:exon
so has part: feature:5954827-5954934:-1:exon
so has part: feature:5954040-5954151:-1:exon
so has part: feature:5952395-5952512:-1:exon
so has part: feature:5951669-5951772:-1:exon
so has part: feature:5945819-5945911:-1:exon
so has part: feature:5945609-5945698:-1:exon
so has part: feature:5944714-5944917:-1:exon
so has part: feature:5942722-5942792:-1:exon
so has part: feature:5942417-5942504:-1:exon
so has part: feature:5942231-5942311:-1:exon
so has part: feature:5939168-5939260:-1:exon
so has part: feature:5938047-5938221:-1:exon
so has part: feature:5933654-5933793:-1:exon
so has part: feature:5931230-5931331:-1:exon
so has part: feature:5929142-5929290:-1:exon
so has part: feature:5927259-5927387:-1:exon
so has part: feature:5923938-5924161:-1:exon
so has part: feature:5921009-5921198:-1:exon
so has part: feature:5917782-5917908:-1:exon
so has part: feature:5916272-5916349:-1:exon
so has part: feature:5914594-5914617:-1:exon

XP_026640547.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5992017-5992060:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5984919-5984997:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5977755-5977919:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5969954-5970050:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5967615-5967691:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5965410-5965614:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5963629-5963780:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5961117-5961190:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5959687-5959810:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5958624-5958722:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5958461-5958540:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5954827-5954934:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5954040-5954151:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5952395-5952512:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5951669-5951772:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5945819-5945911:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5945609-5945698:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5944714-5944917:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5942722-5942792:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5942417-5942504:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5942231-5942311:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:5939168-5939260:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:5938047-5938221:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:5933654-5933793:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:5931230-5931331:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:5929142-5929290:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:5927259-5927387:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:5923938-5924161:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:5921009-5921198:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:5917782-5917908:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:5916272-5916349:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:5914594-5914617:-1:exon

Stag2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Stag2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cohesin subunit SA-2 isoform X1
translation: MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKSKSGNGGGKPPSGPNRMNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKGVVTAEMFRHMQNSEIIRKMTEEFDEDSGDYPLTMAGPQWKKFKSSFCEFIGVLVRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMIGKRANERLELLLQKRKELQENQDEIENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYNKELNSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGIMKRRGRQGPNANLVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEDPLSGEEALTDRQESALIEIMLCTIRQAAECHPPVGRGTGKRVLTAKEKKTQLDDRTKITELFAVALPQLLAKYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLEACSKTYHALCNEEFTIFNRVDISRSQLIDELADKFNRLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNAHDLSKWDLFACNYKLLKTGIENGDMPEQIVIHALQCTHYVILWQLAKITESSSTKEDLLRLKKQMRVFCQICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMSGGRDMLEPLVYTPDSSLQSELLSFILDHVFIEQDDDSNSADGQQEDEASKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDIIKETMSKTRQIDKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTFGLDQLKTREAIAMLHKDGIEFAFKEPNPQGESHPPLNLAFLDILSEFSSKLLRQDKRTVYVYLEKFMTFQMSLRREDVWLPLMSYRNSLLAGGDDDTMSVISGMSSRGSTVRSKKSKPSTGKRKVVEGMQLALPEESSSSDSMWLSREQTLHTPVMMQTPQLTSTIMREPKRLRPEDSFMSVYPMQTEHHQTPLDYNTQVTWMLAQRQQEEARQQQERAAMSYVKLRTNLQHAIRRGTSLMEDDEEPIVEDVMMSSEGRIEDLNEGMDFDTMDIDLPPSKNRRERTELKPDFFDPASIMDESVLGVSMF
SIO_010081: Stag2
subclass of: SO_0000673
so part of: Stag2
location: complement(join(5914594..5914617,5916272..5916349,5917782..5917908,5920810..5920920,5921009..5921198,5923938..5924161,5927259..5927387,5929142..5929290,5931230..5931331,5933654..5933793,5938047..5938221,5939168..5939260,5942231..5942311,5942417..5942504,5942722..5942792,5944714..5944917,5945609..5945698,5945819..5945911,5951669..5951772,5952395..5952512,5954040..5954151,5954827..5954934,5958461..5958540,5958624..5958722,5959687..5959810,5961117..5961190,5963629..5963780,5965410..5965614,5967615..5967691,5969954..5970050,5977755..5977919,5984919..5984997,5992017..5992060))
location: region:5914594-5992060:-1
so has part: feature:5992017-5992060:-1:exon
so has part: feature:5984919-5984997:-1:exon
so has part: feature:5977755-5977919:-1:exon
so has part: feature:5969954-5970050:-1:exon
so has part: feature:5967615-5967691:-1:exon
so has part: feature:5965410-5965614:-1:exon
so has part: feature:5963629-5963780:-1:exon
so has part: feature:5961117-5961190:-1:exon
so has part: feature:5959687-5959810:-1:exon
so has part: feature:5958624-5958722:-1:exon
so has part: feature:5958461-5958540:-1:exon
so has part: feature:5954827-5954934:-1:exon
so has part: feature:5954040-5954151:-1:exon
so has part: feature:5952395-5952512:-1:exon
so has part: feature:5951669-5951772:-1:exon
so has part: feature:5945819-5945911:-1:exon
so has part: feature:5945609-5945698:-1:exon
so has part: feature:5944714-5944917:-1:exon
so has part: feature:5942722-5942792:-1:exon
so has part: feature:5942417-5942504:-1:exon
so has part: feature:5942231-5942311:-1:exon
so has part: feature:5939168-5939260:-1:exon
so has part: feature:5938047-5938221:-1:exon
so has part: feature:5933654-5933793:-1:exon
so has part: feature:5931230-5931331:-1:exon
so has part: feature:5929142-5929290:-1:exon
so has part: feature:5927259-5927387:-1:exon
so has part: feature:5923938-5924161:-1:exon
so has part: feature:5921009-5921198:-1:exon
so has part: feature:5920810-5920920:-1:exon
so has part: feature:5917782-5917908:-1:exon
so has part: feature:5916272-5916349:-1:exon
so has part: feature:5914594-5914617:-1:exon

XP_026640545.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5992017-5992060:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5984919-5984997:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5977755-5977919:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5969954-5970050:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5967615-5967691:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5965410-5965614:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5963629-5963780:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5961117-5961190:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5959687-5959810:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5958624-5958722:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5958461-5958540:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5954827-5954934:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5954040-5954151:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5952395-5952512:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5951669-5951772:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5945819-5945911:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5945609-5945698:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5944714-5944917:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5942722-5942792:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5942417-5942504:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5942231-5942311:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:5939168-5939260:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:5938047-5938221:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:5933654-5933793:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:5931230-5931331:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:5929142-5929290:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:5927259-5927387:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:5923938-5924161:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:5921009-5921198:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:5920810-5920920:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:5917782-5917908:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:5916272-5916349:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:5914594-5914617:-1:exon

Stag2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Stag2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cohesin subunit SA-2 isoform X1
translation: MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKSKSGNGGGKPPSGPNRMNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKGVVTAEMFRHMQNSEIIRKMTEEFDEDSGDYPLTMAGPQWKKFKSSFCEFIGVLVRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMIGKRANERLELLLQKRKELQENQDEIENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYNKELNSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGIMKRRGRQGPNANLVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEDPLSGEEALTDRQESALIEIMLCTIRQAAECHPPVGRGTGKRVLTAKEKKTQLDDRTKITELFAVALPQLLAKYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLEACSKTYHALCNEEFTIFNRVDISRSQLIDELADKFNRLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNAHDLSKWDLFACNYKLLKTGIENGDMPEQIVIHALQCTHYVILWQLAKITESSSTKEDLLRLKKQMRVFCQICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMSGGRDMLEPLVYTPDSSLQSELLSFILDHVFIEQDDDSNSADGQQEDEASKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDIIKETMSKTRQIDKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTFGLDQLKTREAIAMLHKDGIEFAFKEPNPQGESHPPLNLAFLDILSEFSSKLLRQDKRTVYVYLEKFMTFQMSLRREDVWLPLMSYRNSLLAGGDDDTMSVISGMSSRGSTVRSKKSKPSTGKRKVVEGMQLALPEESSSSDSMWLSREQTLHTPVMMQTPQLTSTIMREPKRLRPEDSFMSVYPMQTEHHQTPLDYNTQVTWMLAQRQQEEARQQQERAAMSYVKLRTNLQHAIRRGTSLMEDDEEPIVEDVMMSSEGRIEDLNEGMDFDTMDIDLPPSKNRRERTELKPDFFDPASIMDESVLGVSMF
SIO_010081: Stag2
subclass of: SO_0000673
so part of: Stag2
location: complement(join(5914594..5914617,5916272..5916349,5917782..5917908,5920810..5920920,5921009..5921198,5923938..5924161,5927259..5927387,5929142..5929290,5931230..5931331,5933654..5933793,5938047..5938221,5939168..5939260,5942231..5942311,5942417..5942504,5942722..5942792,5944714..5944917,5945609..5945698,5945819..5945911,5951669..5951772,5952395..5952512,5954040..5954151,5954827..5954934,5958461..5958540,5958624..5958722,5959687..5959810,5961117..5961190,5963629..5963780,5965410..5965614,5967615..5967691,5969954..5970050,5977755..5977919,5984919..5984997,5992017..5992060))
location: region:5914594-5992060:-1
so has part: feature:5992017-5992060:-1:exon
so has part: feature:5984919-5984997:-1:exon
so has part: feature:5977755-5977919:-1:exon
so has part: feature:5969954-5970050:-1:exon
so has part: feature:5967615-5967691:-1:exon
so has part: feature:5965410-5965614:-1:exon
so has part: feature:5963629-5963780:-1:exon
so has part: feature:5961117-5961190:-1:exon
so has part: feature:5959687-5959810:-1:exon
so has part: feature:5958624-5958722:-1:exon
so has part: feature:5958461-5958540:-1:exon
so has part: feature:5954827-5954934:-1:exon
so has part: feature:5954040-5954151:-1:exon
so has part: feature:5952395-5952512:-1:exon
so has part: feature:5951669-5951772:-1:exon
so has part: feature:5945819-5945911:-1:exon
so has part: feature:5945609-5945698:-1:exon
so has part: feature:5944714-5944917:-1:exon
so has part: feature:5942722-5942792:-1:exon
so has part: feature:5942417-5942504:-1:exon
so has part: feature:5942231-5942311:-1:exon
so has part: feature:5939168-5939260:-1:exon
so has part: feature:5938047-5938221:-1:exon
so has part: feature:5933654-5933793:-1:exon
so has part: feature:5931230-5931331:-1:exon
so has part: feature:5929142-5929290:-1:exon
so has part: feature:5927259-5927387:-1:exon
so has part: feature:5923938-5924161:-1:exon
so has part: feature:5921009-5921198:-1:exon
so has part: feature:5920810-5920920:-1:exon
so has part: feature:5917782-5917908:-1:exon
so has part: feature:5916272-5916349:-1:exon
so has part: feature:5914594-5914617:-1:exon

XP_026640546.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5992017-5992060:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5984919-5984997:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5977755-5977919:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5969954-5970050:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5967615-5967691:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5965410-5965614:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5963629-5963780:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5961117-5961190:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5959687-5959810:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5958624-5958722:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5958461-5958540:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5954827-5954934:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5954040-5954151:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5952395-5952512:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5951669-5951772:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5945819-5945911:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5945609-5945698:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5944714-5944917:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5942722-5942792:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5942417-5942504:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5942231-5942311:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:5939168-5939260:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:5938047-5938221:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:5933654-5933793:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:5931230-5931331:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:5929142-5929290:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:5927259-5927387:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:5923938-5924161:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:5921009-5921198:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:5920810-5920920:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:5917782-5917908:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:5916272-5916349:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:5914594-5914617:-1:exon

Stag2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Stag2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cohesin subunit SA-2 isoform X1
translation: MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKSKSGNGGGKPPSGPNRMNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKGVVTAEMFRHMQNSEIIRKMTEEFDEDSGDYPLTMAGPQWKKFKSSFCEFIGVLVRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMIGKRANERLELLLQKRKELQENQDEIENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYNKELNSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGIMKRRGRQGPNANLVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEDPLSGEEALTDRQESALIEIMLCTIRQAAECHPPVGRGTGKRVLTAKEKKTQLDDRTKITELFAVALPQLLAKYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLEACSKTYHALCNEEFTIFNRVDISRSQLIDELADKFNRLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNAHDLSKWDLFACNYKLLKTGIENGDMPEQIVIHALQCTHYVILWQLAKITESSSTKEDLLRLKKQMRVFCQICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMSGGRDMLEPLVYTPDSSLQSELLSFILDHVFIEQDDDSNSADGQQEDEASKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDIIKETMSKTRQIDKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTFGLDQLKTREAIAMLHKDGIEFAFKEPNPQGESHPPLNLAFLDILSEFSSKLLRQDKRTVYVYLEKFMTFQMSLRREDVWLPLMSYRNSLLAGGDDDTMSVISGMSSRGSTVRSKKSKPSTGKRKVVEGMQLALPEESSSSDSMWLSREQTLHTPVMMQTPQLTSTIMREPKRLRPEDSFMSVYPMQTEHHQTPLDYNTQVTWMLAQRQQEEARQQQERAAMSYVKLRTNLQHAIRRGTSLMEDDEEPIVEDVMMSSEGRIEDLNEGMDFDTMDIDLPPSKNRRERTELKPDFFDPASIMDESVLGVSMF
SIO_010081: Stag2
subclass of: SO_0000673
so part of: Stag2
location: complement(join(5914594..5914617,5916272..5916349,5917782..5917908,5920810..5920920,5921009..5921198,5923938..5924161,5927259..5927387,5929142..5929290,5931230..5931331,5933654..5933793,5938047..5938221,5939168..5939260,5942231..5942311,5942417..5942504,5942722..5942792,5944714..5944917,5945609..5945698,5945819..5945911,5951669..5951772,5952395..5952512,5954040..5954151,5954827..5954934,5958461..5958540,5958624..5958722,5959687..5959810,5961117..5961190,5963629..5963780,5965410..5965614,5967615..5967691,5969954..5970050,5977755..5977919,5984919..5984997,5992017..5992060))
location: region:5914594-5992060:-1
so has part: feature:5992017-5992060:-1:exon
so has part: feature:5984919-5984997:-1:exon
so has part: feature:5977755-5977919:-1:exon
so has part: feature:5969954-5970050:-1:exon
so has part: feature:5967615-5967691:-1:exon
so has part: feature:5965410-5965614:-1:exon
so has part: feature:5963629-5963780:-1:exon
so has part: feature:5961117-5961190:-1:exon
so has part: feature:5959687-5959810:-1:exon
so has part: feature:5958624-5958722:-1:exon
so has part: feature:5958461-5958540:-1:exon
so has part: feature:5954827-5954934:-1:exon
so has part: feature:5954040-5954151:-1:exon
so has part: feature:5952395-5952512:-1:exon
so has part: feature:5951669-5951772:-1:exon
so has part: feature:5945819-5945911:-1:exon
so has part: feature:5945609-5945698:-1:exon
so has part: feature:5944714-5944917:-1:exon
so has part: feature:5942722-5942792:-1:exon
so has part: feature:5942417-5942504:-1:exon
so has part: feature:5942231-5942311:-1:exon
so has part: feature:5939168-5939260:-1:exon
so has part: feature:5938047-5938221:-1:exon
so has part: feature:5933654-5933793:-1:exon
so has part: feature:5931230-5931331:-1:exon
so has part: feature:5929142-5929290:-1:exon
so has part: feature:5927259-5927387:-1:exon
so has part: feature:5923938-5924161:-1:exon
so has part: feature:5921009-5921198:-1:exon
so has part: feature:5920810-5920920:-1:exon
so has part: feature:5917782-5917908:-1:exon
so has part: feature:5916272-5916349:-1:exon
so has part: feature:5914594-5914617:-1:exon

XP_005358481.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5992017-5992060:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5984919-5984997:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5977755-5977919:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5969954-5970050:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5967615-5967691:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5965410-5965614:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5963629-5963780:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5961117-5961190:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5959687-5959810:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5958624-5958722:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5958461-5958540:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5954827-5954934:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5954040-5954151:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5952395-5952512:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5951669-5951772:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5945819-5945911:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5945609-5945698:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5944714-5944917:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5942722-5942792:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5942417-5942504:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5942231-5942311:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:5939168-5939260:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:5938047-5938221:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:5933654-5933793:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:5931230-5931331:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:5929142-5929290:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:5927259-5927387:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:5923938-5924161:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:5921009-5921198:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:5920810-5920920:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:5917782-5917908:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:5916272-5916349:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:5914594-5914617:-1:exon

Stag2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Stag2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cohesin subunit SA-2 isoform X1
translation: MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKSKSGNGGGKPPSGPNRMNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKGVVTAEMFRHMQNSEIIRKMTEEFDEDSGDYPLTMAGPQWKKFKSSFCEFIGVLVRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMIGKRANERLELLLQKRKELQENQDEIENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYNKELNSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGIMKRRGRQGPNANLVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEDPLSGEEALTDRQESALIEIMLCTIRQAAECHPPVGRGTGKRVLTAKEKKTQLDDRTKITELFAVALPQLLAKYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLEACSKTYHALCNEEFTIFNRVDISRSQLIDELADKFNRLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNAHDLSKWDLFACNYKLLKTGIENGDMPEQIVIHALQCTHYVILWQLAKITESSSTKEDLLRLKKQMRVFCQICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMSGGRDMLEPLVYTPDSSLQSELLSFILDHVFIEQDDDSNSADGQQEDEASKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDIIKETMSKTRQIDKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTFGLDQLKTREAIAMLHKDGIEFAFKEPNPQGESHPPLNLAFLDILSEFSSKLLRQDKRTVYVYLEKFMTFQMSLRREDVWLPLMSYRNSLLAGGDDDTMSVISGMSSRGSTVRSKKSKPSTGKRKVVEGMQLALPEESSSSDSMWLSREQTLHTPVMMQTPQLTSTIMREPKRLRPEDSFMSVYPMQTEHHQTPLDYNTQVTWMLAQRQQEEARQQQERAAMSYVKLRTNLQHAIRRGTSLMEDDEEPIVEDVMMSSEGRIEDLNEGMDFDTMDIDLPPSKNRRERTELKPDFFDPASIMDESVLGVSMF
SIO_010081: Stag2
subclass of: SO_0000673
so part of: Stag2
location: complement(join(5914594..5914617,5916272..5916349,5917782..5917908,5920810..5920920,5921009..5921198,5923938..5924161,5927259..5927387,5929142..5929290,5931230..5931331,5933654..5933793,5938047..5938221,5939168..5939260,5942231..5942311,5942417..5942504,5942722..5942792,5944714..5944917,5945609..5945698,5945819..5945911,5951669..5951772,5952395..5952512,5954040..5954151,5954827..5954934,5958461..5958540,5958624..5958722,5959687..5959810,5961117..5961190,5963629..5963780,5965410..5965614,5967615..5967691,5969954..5970050,5977755..5977919,5984919..5984997,5992017..5992060))
location: region:5914594-5992060:-1
so has part: feature:5992017-5992060:-1:exon
so has part: feature:5984919-5984997:-1:exon
so has part: feature:5977755-5977919:-1:exon
so has part: feature:5969954-5970050:-1:exon
so has part: feature:5967615-5967691:-1:exon
so has part: feature:5965410-5965614:-1:exon
so has part: feature:5963629-5963780:-1:exon
so has part: feature:5961117-5961190:-1:exon
so has part: feature:5959687-5959810:-1:exon
so has part: feature:5958624-5958722:-1:exon
so has part: feature:5958461-5958540:-1:exon
so has part: feature:5954827-5954934:-1:exon
so has part: feature:5954040-5954151:-1:exon
so has part: feature:5952395-5952512:-1:exon
so has part: feature:5951669-5951772:-1:exon
so has part: feature:5945819-5945911:-1:exon
so has part: feature:5945609-5945698:-1:exon
so has part: feature:5944714-5944917:-1:exon
so has part: feature:5942722-5942792:-1:exon
so has part: feature:5942417-5942504:-1:exon
so has part: feature:5942231-5942311:-1:exon
so has part: feature:5939168-5939260:-1:exon
so has part: feature:5938047-5938221:-1:exon
so has part: feature:5933654-5933793:-1:exon
so has part: feature:5931230-5931331:-1:exon
so has part: feature:5929142-5929290:-1:exon
so has part: feature:5927259-5927387:-1:exon
so has part: feature:5923938-5924161:-1:exon
so has part: feature:5921009-5921198:-1:exon
so has part: feature:5920810-5920920:-1:exon
so has part: feature:5917782-5917908:-1:exon
so has part: feature:5916272-5916349:-1:exon
so has part: feature:5914594-5914617:-1:exon

XP_013205913.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5992017-5992060:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5984919-5984997:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5977755-5977919:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5969954-5970050:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5967615-5967691:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5965410-5965614:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5963629-5963780:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5961117-5961190:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5959687-5959810:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5958624-5958722:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5958461-5958540:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5954827-5954934:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5954040-5954151:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5952395-5952512:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5951669-5951772:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5945819-5945911:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5945609-5945698:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5944714-5944917:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5942722-5942792:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5942417-5942504:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5942231-5942311:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:5939168-5939260:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:5938047-5938221:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:5933654-5933793:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:5931230-5931331:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:5929142-5929290:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:5927259-5927387:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:5923938-5924161:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:5921009-5921198:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:5920810-5920920:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:5917782-5917908:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:5916272-5916349:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:5914594-5914617:-1:exon

Stag2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Stag2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cohesin subunit SA-2 isoform X1
translation: MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKSKSGNGGGKPPSGPNRMNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKGVVTAEMFRHMQNSEIIRKMTEEFDEDSGDYPLTMAGPQWKKFKSSFCEFIGVLVRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMIGKRANERLELLLQKRKELQENQDEIENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYNKELNSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGIMKRRGRQGPNANLVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEDPLSGEEALTDRQESALIEIMLCTIRQAAECHPPVGRGTGKRVLTAKEKKTQLDDRTKITELFAVALPQLLAKYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLEACSKTYHALCNEEFTIFNRVDISRSQLIDELADKFNRLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNAHDLSKWDLFACNYKLLKTGIENGDMPEQIVIHALQCTHYVILWQLAKITESSSTKEDLLRLKKQMRVFCQICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMSGGRDMLEPLVYTPDSSLQSELLSFILDHVFIEQDDDSNSADGQQEDEASKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDIIKETMSKTRQIDKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTFGLDQLKTREAIAMLHKDGIEFAFKEPNPQGESHPPLNLAFLDILSEFSSKLLRQDKRTVYVYLEKFMTFQMSLRREDVWLPLMSYRNSLLAGGDDDTMSVISGMSSRGSTVRSKKSKPSTGKRKVVEGMQLALPEESSSSDSMWLSREQTLHTPVMMQTPQLTSTIMREPKRLRPEDSFMSVYPMQTEHHQTPLDYNTQVTWMLAQRQQEEARQQQERAAMSYVKLRTNLQHAIRRGTSLMEDDEEPIVEDVMMSSEGRIEDLNEGMDFDTMDIDLPPSKNRRERTELKPDFFDPASIMDESVLGVSMF
SIO_010081: Stag2
subclass of: SO_0000673
so part of: Stag2
location: complement(join(5914594..5914617,5916272..5916349,5917782..5917908,5920810..5920920,5921009..5921198,5923938..5924161,5927259..5927387,5929142..5929290,5931230..5931331,5933654..5933793,5938047..5938221,5939168..5939260,5942231..5942311,5942417..5942504,5942722..5942792,5944714..5944917,5945609..5945698,5945819..5945911,5951669..5951772,5952395..5952512,5954040..5954151,5954827..5954934,5958461..5958540,5958624..5958722,5959687..5959810,5961117..5961190,5963629..5963780,5965410..5965614,5967615..5967691,5969954..5970050,5977755..5977919,5984919..5984997,5992017..5992060))
location: region:5914594-5992060:-1
so has part: feature:5992017-5992060:-1:exon
so has part: feature:5984919-5984997:-1:exon
so has part: feature:5977755-5977919:-1:exon
so has part: feature:5969954-5970050:-1:exon
so has part: feature:5967615-5967691:-1:exon
so has part: feature:5965410-5965614:-1:exon
so has part: feature:5963629-5963780:-1:exon
so has part: feature:5961117-5961190:-1:exon
so has part: feature:5959687-5959810:-1:exon
so has part: feature:5958624-5958722:-1:exon
so has part: feature:5958461-5958540:-1:exon
so has part: feature:5954827-5954934:-1:exon
so has part: feature:5954040-5954151:-1:exon
so has part: feature:5952395-5952512:-1:exon
so has part: feature:5951669-5951772:-1:exon
so has part: feature:5945819-5945911:-1:exon
so has part: feature:5945609-5945698:-1:exon
so has part: feature:5944714-5944917:-1:exon
so has part: feature:5942722-5942792:-1:exon
so has part: feature:5942417-5942504:-1:exon
so has part: feature:5942231-5942311:-1:exon
so has part: feature:5939168-5939260:-1:exon
so has part: feature:5938047-5938221:-1:exon
so has part: feature:5933654-5933793:-1:exon
so has part: feature:5931230-5931331:-1:exon
so has part: feature:5929142-5929290:-1:exon
so has part: feature:5927259-5927387:-1:exon
so has part: feature:5923938-5924161:-1:exon
so has part: feature:5921009-5921198:-1:exon
so has part: feature:5920810-5920920:-1:exon
so has part: feature:5917782-5917908:-1:exon
so has part: feature:5916272-5916349:-1:exon
so has part: feature:5914594-5914617:-1:exon

XP_013205914.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5992017-5992060:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5984919-5984997:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5977755-5977919:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5969954-5970050:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5967615-5967691:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5965410-5965614:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5963629-5963780:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5961117-5961190:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5959687-5959810:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5958624-5958722:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5958461-5958540:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5954827-5954934:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5954040-5954151:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5952395-5952512:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5951669-5951772:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5945819-5945911:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5945609-5945698:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5944714-5944917:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5942722-5942792:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5942417-5942504:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5942231-5942311:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:5939168-5939260:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:5938047-5938221:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:5933654-5933793:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:5931230-5931331:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:5929142-5929290:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:5927259-5927387:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:5923938-5924161:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:5921009-5921198:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:5920810-5920920:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:5917782-5917908:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:5916272-5916349:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:5914594-5914617:-1:exon

Stag2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Stag2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cohesin subunit SA-2 isoform X1
translation: MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKSKSGNGGGKPPSGPNRMNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKGVVTAEMFRHMQNSEIIRKMTEEFDEDSGDYPLTMAGPQWKKFKSSFCEFIGVLVRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMIGKRANERLELLLQKRKELQENQDEIENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYNKELNSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGIMKRRGRQGPNANLVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEDPLSGEEALTDRQESALIEIMLCTIRQAAECHPPVGRGTGKRVLTAKEKKTQLDDRTKITELFAVALPQLLAKYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLEACSKTYHALCNEEFTIFNRVDISRSQLIDELADKFNRLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNAHDLSKWDLFACNYKLLKTGIENGDMPEQIVIHALQCTHYVILWQLAKITESSSTKEDLLRLKKQMRVFCQICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMSGGRDMLEPLVYTPDSSLQSELLSFILDHVFIEQDDDSNSADGQQEDEASKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDIIKETMSKTRQIDKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTFGLDQLKTREAIAMLHKDGIEFAFKEPNPQGESHPPLNLAFLDILSEFSSKLLRQDKRTVYVYLEKFMTFQMSLRREDVWLPLMSYRNSLLAGGDDDTMSVISGMSSRGSTVRSKKSKPSTGKRKVVEGMQLALPEESSSSDSMWLSREQTLHTPVMMQTPQLTSTIMREPKRLRPEDSFMSVYPMQTEHHQTPLDYNTQVTWMLAQRQQEEARQQQERAAMSYVKLRTNLQHAIRRGTSLMEDDEEPIVEDVMMSSEGRIEDLNEGMDFDTMDIDLPPSKNRRERTELKPDFFDPASIMDESVLGVSMF
SIO_010081: Stag2
subclass of: SO_0000673
so part of: Stag2
location: complement(join(5914594..5914617,5916272..5916349,5917782..5917908,5920810..5920920,5921009..5921198,5923938..5924161,5927259..5927387,5929142..5929290,5931230..5931331,5933654..5933793,5938047..5938221,5939168..5939260,5942231..5942311,5942417..5942504,5942722..5942792,5944714..5944917,5945609..5945698,5945819..5945911,5951669..5951772,5952395..5952512,5954040..5954151,5954827..5954934,5958461..5958540,5958624..5958722,5959687..5959810,5961117..5961190,5963629..5963780,5965410..5965614,5967615..5967691,5969954..5970050,5977755..5977919,5984919..5984997,5992017..5992060))
location: region:5914594-5992060:-1
so has part: feature:5992017-5992060:-1:exon
so has part: feature:5984919-5984997:-1:exon
so has part: feature:5977755-5977919:-1:exon
so has part: feature:5969954-5970050:-1:exon
so has part: feature:5967615-5967691:-1:exon
so has part: feature:5965410-5965614:-1:exon
so has part: feature:5963629-5963780:-1:exon
so has part: feature:5961117-5961190:-1:exon
so has part: feature:5959687-5959810:-1:exon
so has part: feature:5958624-5958722:-1:exon
so has part: feature:5958461-5958540:-1:exon
so has part: feature:5954827-5954934:-1:exon
so has part: feature:5954040-5954151:-1:exon
so has part: feature:5952395-5952512:-1:exon
so has part: feature:5951669-5951772:-1:exon
so has part: feature:5945819-5945911:-1:exon
so has part: feature:5945609-5945698:-1:exon
so has part: feature:5944714-5944917:-1:exon
so has part: feature:5942722-5942792:-1:exon
so has part: feature:5942417-5942504:-1:exon
so has part: feature:5942231-5942311:-1:exon
so has part: feature:5939168-5939260:-1:exon
so has part: feature:5938047-5938221:-1:exon
so has part: feature:5933654-5933793:-1:exon
so has part: feature:5931230-5931331:-1:exon
so has part: feature:5929142-5929290:-1:exon
so has part: feature:5927259-5927387:-1:exon
so has part: feature:5923938-5924161:-1:exon
so has part: feature:5921009-5921198:-1:exon
so has part: feature:5920810-5920920:-1:exon
so has part: feature:5917782-5917908:-1:exon
so has part: feature:5916272-5916349:-1:exon
so has part: feature:5914594-5914617:-1:exon

XP_013205915.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5992017-5992060:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5984919-5984997:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5977755-5977919:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5969954-5970050:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5967615-5967691:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5965410-5965614:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5963629-5963780:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5961117-5961190:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5959687-5959810:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5958624-5958722:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5958461-5958540:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5954827-5954934:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5954040-5954151:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5952395-5952512:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5951669-5951772:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5945819-5945911:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5945609-5945698:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5944714-5944917:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5942722-5942792:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5942417-5942504:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5942231-5942311:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:5939168-5939260:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:5938047-5938221:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:5933654-5933793:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:5931230-5931331:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:5929142-5929290:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:5927259-5927387:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:5923938-5924161:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:5921009-5921198:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:5920810-5920920:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:5917782-5917908:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:5916272-5916349:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:5914594-5914617:-1:exon

Xiap
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: Xiap
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(6103512..6146232)
location: region:6103512-6146232:-1
so has part: feature:6103512-6146232:-1:exon
subclass of: SO_0000010

101982215
type: Gene
SIO_000068: ncbigene

position:6103512:-1
position: 6103512
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6146232:-1
position: 6146232
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6103512-6146232:-1:exon

Xiap
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Xiap
product: X-linked inhibitor of apoptosis, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_013350466.2
SIO_010081: Xiap
subclass of: SO_0000673
so part of: Xiap
location: complement(join(6103512..6108474,6116481..6116681,6118765..6118807,6119949..6120027,6122158..6122257,6123457..6124357,6145818..6145937,6146194..6146232))
location: region:6103512-6146232:-1
so has part: feature:6146194-6146232:-1:exon
so has part: feature:6145818-6145937:-1:exon
so has part: feature:6123457-6124357:-1:exon
so has part: feature:6122158-6122257:-1:exon
so has part: feature:6119949-6120027:-1:exon
so has part: feature:6118765-6118807:-1:exon
so has part: feature:6116481-6116681:-1:exon
so has part: feature:6103512-6108474:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6146194-6146232:-1:exon

position:6146194:-1
position: 6146194
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6145818-6145937:-1:exon

position:6145818:-1
position: 6145818
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6145937:-1
position: 6145937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6123457-6124357:-1:exon

position:6123457:-1
position: 6123457
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6124357:-1
position: 6124357
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6122158-6122257:-1:exon

position:6122158:-1
position: 6122158
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6122257:-1
position: 6122257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6119949-6120027:-1:exon

position:6119949:-1
position: 6119949
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6120027:-1
position: 6120027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6118765-6118807:-1:exon

position:6118765:-1
position: 6118765
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6118807:-1
position: 6118807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:6116481-6116681:-1:exon

position:6116481:-1
position: 6116481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6116681:-1
position: 6116681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:6103512-6108474:-1:exon

position:6108474:-1
position: 6108474
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Xiap
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Xiap
product: X-linked inhibitor of apoptosis, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_026784789.1
SIO_010081: Xiap
subclass of: SO_0000673
so part of: Xiap
location: complement(join(6103512..6108474,6116481..6116681,6118765..6118807,6119949..6120027,6122158..6122257,6123457..6124362,6146194..6146213))
location: region:6103512-6146213:-1
so has part: feature:6146194-6146213:-1:exon
so has part: feature:6123457-6124362:-1:exon
so has part: feature:6122158-6122257:-1:exon
so has part: feature:6119949-6120027:-1:exon
so has part: feature:6118765-6118807:-1:exon
so has part: feature:6116481-6116681:-1:exon
so has part: feature:6103512-6108474:-1:exon

position:6146213:-1
position: 6146213
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6146194-6146213:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6123457-6124362:-1:exon

position:6124362:-1
position: 6124362
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6122158-6122257:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6119949-6120027:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6118765-6118807:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6116481-6116681:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6103512-6108474:-1:exon

Xiap
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Xiap
product: X-linked inhibitor of apoptosis, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XM_026784788.1
SIO_010081: Xiap
subclass of: SO_0000673
so part of: Xiap
location: complement(join(6103512..6108474,6116481..6116681,6118765..6118807,6119949..6120027,6122158..6122257,6123457..6124362,6145823..6145879))
location: region:6103512-6145879:-1
so has part: feature:6145823-6145879:-1:exon
so has part: feature:6123457-6124362:-1:exon
so has part: feature:6122158-6122257:-1:exon
so has part: feature:6119949-6120027:-1:exon
so has part: feature:6118765-6118807:-1:exon
so has part: feature:6116481-6116681:-1:exon
so has part: feature:6103512-6108474:-1:exon

position:6145879:-1
position: 6145879
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6145823-6145879:-1:exon

position:6145823:-1
position: 6145823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6123457-6124362:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6122158-6122257:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6119949-6120027:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6118765-6118807:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6116481-6116681:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6103512-6108474:-1:exon

Xiap
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Xiap
product: X-linked inhibitor of apoptosis, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XM_013350467.2
SIO_010081: Xiap
subclass of: SO_0000673
so part of: Xiap
location: complement(join(6103512..6108474,6116481..6116681,6118765..6118807,6119949..6120027,6122158..6122257,6123457..6124362,6145818..6145869))
location: region:6103512-6145869:-1
so has part: feature:6145818-6145869:-1:exon
so has part: feature:6123457-6124362:-1:exon
so has part: feature:6122158-6122257:-1:exon
so has part: feature:6119949-6120027:-1:exon
so has part: feature:6118765-6118807:-1:exon
so has part: feature:6116481-6116681:-1:exon
so has part: feature:6103512-6108474:-1:exon

position:6145869:-1
position: 6145869
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6145818-6145869:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6123457-6124362:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6122158-6122257:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6119949-6120027:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6118765-6118807:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6116481-6116681:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6103512-6108474:-1:exon

Xiap
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Xiap
product: X-linked inhibitor of apoptosis, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_005358427.3
SIO_010081: Xiap
subclass of: SO_0000673
so part of: Xiap
location: complement(join(6103512..6108474,6116481..6116681,6118765..6118807,6119949..6120027,6122158..6122257,6123457..6124362,6145537..6145632))
location: region:6103512-6145632:-1
so has part: feature:6145537-6145632:-1:exon
so has part: feature:6123457-6124362:-1:exon
so has part: feature:6122158-6122257:-1:exon
so has part: feature:6119949-6120027:-1:exon
so has part: feature:6118765-6118807:-1:exon
so has part: feature:6116481-6116681:-1:exon
so has part: feature:6103512-6108474:-1:exon

position:6145632:-1
position: 6145632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6145537-6145632:-1:exon

position:6145537:-1
position: 6145537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6123457-6124362:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6122158-6122257:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6119949-6120027:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6118765-6118807:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6116481-6116681:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6103512-6108474:-1:exon

Xiap
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Xiap
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase XIAP
translation: MTFNSFEGSRTCVPADTNKDEEFVEEFNRLKTFATFPSSSPVSASTLARAGFLYTGEGDTVQCFSCHASVDRWQYGDSAVGRHRKISPNCRFINGFYFENSATQSSNPAVQNGQYKAENYIGNRNHFALDRPSETQADYLLRTGQVVDISDTIFPRNPAMCSEEARLKSFQNWPDYAHITPRELASAGLYYTGIDDQVQCFCCGGKLKNWEPCDRAWSEHRRHFPNCFFVLGRNVNVRSESGVSSDRNFPNSTISPRNPTMAEYEARIITFGTWIYSVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPNEDPWEQHAKWFPGCKYLLDEKGQEYINNIHLTHSLGESLVRTAEKTPSLTKRIDDTIFQNPMVQEAIQMGFSFRDIKKTMEEKIQTSGSSYLSLEVLIADLVSAQKDNTQDESSQTSLQKDISTEEQLRRLQEEKLCKICMDRNIAVVFVPCGHLVTCKQCAEAVDKCPMCYTIITFKQKIFMS
SIO_010081: Xiap
subclass of: SO_0000673
so part of: Xiap
location: complement(join(6108281..6108474,6116481..6116681,6118765..6118807,6119949..6120027,6122158..6122257,6123457..6124330))
location: region:6108281-6124330:-1
so has part: feature:6123457-6124330:-1:exon
so has part: feature:6122158-6122257:-1:exon
so has part: feature:6119949-6120027:-1:exon
so has part: feature:6118765-6118807:-1:exon
so has part: feature:6116481-6116681:-1:exon
so has part: feature:6108281-6108474:-1:exon

XP_026640589.1
type: Protein
SIO_000068: ncbiprotein

position:6108281:-1
position: 6108281
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6124330:-1
position: 6124330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6123457-6124330:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6122158-6122257:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6119949-6120027:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6118765-6118807:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6116481-6116681:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6108281-6108474:-1:exon

Xiap
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Xiap
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase XIAP
translation: MTFNSFEGSRTCVPADTNKDEEFVEEFNRLKTFATFPSSSPVSASTLARAGFLYTGEGDTVQCFSCHASVDRWQYGDSAVGRHRKISPNCRFINGFYFENSATQSSNPAVQNGQYKAENYIGNRNHFALDRPSETQADYLLRTGQVVDISDTIFPRNPAMCSEEARLKSFQNWPDYAHITPRELASAGLYYTGIDDQVQCFCCGGKLKNWEPCDRAWSEHRRHFPNCFFVLGRNVNVRSESGVSSDRNFPNSTISPRNPTMAEYEARIITFGTWIYSVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPNEDPWEQHAKWFPGCKYLLDEKGQEYINNIHLTHSLGESLVRTAEKTPSLTKRIDDTIFQNPMVQEAIQMGFSFRDIKKTMEEKIQTSGSSYLSLEVLIADLVSAQKDNTQDESSQTSLQKDISTEEQLRRLQEEKLCKICMDRNIAVVFVPCGHLVTCKQCAEAVDKCPMCYTIITFKQKIFMS
SIO_010081: Xiap
subclass of: SO_0000673
so part of: Xiap
location: complement(join(6108281..6108474,6116481..6116681,6118765..6118807,6119949..6120027,6122158..6122257,6123457..6124330))
location: region:6108281-6124330:-1
so has part: feature:6123457-6124330:-1:exon
so has part: feature:6122158-6122257:-1:exon
so has part: feature:6119949-6120027:-1:exon
so has part: feature:6118765-6118807:-1:exon
so has part: feature:6116481-6116681:-1:exon
so has part: feature:6108281-6108474:-1:exon

XP_026640590.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6123457-6124330:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6122158-6122257:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6119949-6120027:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6118765-6118807:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6116481-6116681:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6108281-6108474:-1:exon

Xiap
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Xiap
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase XIAP
translation: MTFNSFEGSRTCVPADTNKDEEFVEEFNRLKTFATFPSSSPVSASTLARAGFLYTGEGDTVQCFSCHASVDRWQYGDSAVGRHRKISPNCRFINGFYFENSATQSSNPAVQNGQYKAENYIGNRNHFALDRPSETQADYLLRTGQVVDISDTIFPRNPAMCSEEARLKSFQNWPDYAHITPRELASAGLYYTGIDDQVQCFCCGGKLKNWEPCDRAWSEHRRHFPNCFFVLGRNVNVRSESGVSSDRNFPNSTISPRNPTMAEYEARIITFGTWIYSVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPNEDPWEQHAKWFPGCKYLLDEKGQEYINNIHLTHSLGESLVRTAEKTPSLTKRIDDTIFQNPMVQEAIQMGFSFRDIKKTMEEKIQTSGSSYLSLEVLIADLVSAQKDNTQDESSQTSLQKDISTEEQLRRLQEEKLCKICMDRNIAVVFVPCGHLVTCKQCAEAVDKCPMCYTIITFKQKIFMS
SIO_010081: Xiap
subclass of: SO_0000673
so part of: Xiap
location: complement(join(6108281..6108474,6116481..6116681,6118765..6118807,6119949..6120027,6122158..6122257,6123457..6124330))
location: region:6108281-6124330:-1
so has part: feature:6123457-6124330:-1:exon
so has part: feature:6122158-6122257:-1:exon
so has part: feature:6119949-6120027:-1:exon
so has part: feature:6118765-6118807:-1:exon
so has part: feature:6116481-6116681:-1:exon
so has part: feature:6108281-6108474:-1:exon

XP_005358484.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6123457-6124330:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6122158-6122257:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6119949-6120027:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6118765-6118807:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6116481-6116681:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6108281-6108474:-1:exon

Xiap
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Xiap
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase XIAP
translation: MTFNSFEGSRTCVPADTNKDEEFVEEFNRLKTFATFPSSSPVSASTLARAGFLYTGEGDTVQCFSCHASVDRWQYGDSAVGRHRKISPNCRFINGFYFENSATQSSNPAVQNGQYKAENYIGNRNHFALDRPSETQADYLLRTGQVVDISDTIFPRNPAMCSEEARLKSFQNWPDYAHITPRELASAGLYYTGIDDQVQCFCCGGKLKNWEPCDRAWSEHRRHFPNCFFVLGRNVNVRSESGVSSDRNFPNSTISPRNPTMAEYEARIITFGTWIYSVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPNEDPWEQHAKWFPGCKYLLDEKGQEYINNIHLTHSLGESLVRTAEKTPSLTKRIDDTIFQNPMVQEAIQMGFSFRDIKKTMEEKIQTSGSSYLSLEVLIADLVSAQKDNTQDESSQTSLQKDISTEEQLRRLQEEKLCKICMDRNIAVVFVPCGHLVTCKQCAEAVDKCPMCYTIITFKQKIFMS
SIO_010081: Xiap
subclass of: SO_0000673
so part of: Xiap
location: complement(join(6108281..6108474,6116481..6116681,6118765..6118807,6119949..6120027,6122158..6122257,6123457..6124330))
location: region:6108281-6124330:-1
so has part: feature:6123457-6124330:-1:exon
so has part: feature:6122158-6122257:-1:exon
so has part: feature:6119949-6120027:-1:exon
so has part: feature:6118765-6118807:-1:exon
so has part: feature:6116481-6116681:-1:exon
so has part: feature:6108281-6108474:-1:exon

XP_013205920.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6123457-6124330:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6122158-6122257:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6119949-6120027:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6118765-6118807:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6116481-6116681:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6108281-6108474:-1:exon

Xiap
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Xiap
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase XIAP
translation: MTFNSFEGSRTCVPADTNKDEEFVEEFNRLKTFATFPSSSPVSASTLARAGFLYTGEGDTVQCFSCHASVDRWQYGDSAVGRHRKISPNCRFINGFYFENSATQSSNPAVQNGQYKAENYIGNRNHFALDRPSETQADYLLRTGQVVDISDTIFPRNPAMCSEEARLKSFQNWPDYAHITPRELASAGLYYTGIDDQVQCFCCGGKLKNWEPCDRAWSEHRRHFPNCFFVLGRNVNVRSESGVSSDRNFPNSTISPRNPTMAEYEARIITFGTWIYSVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPNEDPWEQHAKWFPGCKYLLDEKGQEYINNIHLTHSLGESLVRTAEKTPSLTKRIDDTIFQNPMVQEAIQMGFSFRDIKKTMEEKIQTSGSSYLSLEVLIADLVSAQKDNTQDESSQTSLQKDISTEEQLRRLQEEKLCKICMDRNIAVVFVPCGHLVTCKQCAEAVDKCPMCYTIITFKQKIFMS
SIO_010081: Xiap
subclass of: SO_0000673
so part of: Xiap
location: complement(join(6108281..6108474,6116481..6116681,6118765..6118807,6119949..6120027,6122158..6122257,6123457..6124330))
location: region:6108281-6124330:-1
so has part: feature:6123457-6124330:-1:exon
so has part: feature:6122158-6122257:-1:exon
so has part: feature:6119949-6120027:-1:exon
so has part: feature:6118765-6118807:-1:exon
so has part: feature:6116481-6116681:-1:exon
so has part: feature:6108281-6108474:-1:exon

XP_013205921.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6123457-6124330:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6122158-6122257:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6119949-6120027:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6118765-6118807:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6116481-6116681:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6108281-6108474:-1:exon

LOC113457440
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC113457440
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6145932..6161270
location: region:6145932-6161270:1
so has part: feature:6145932-6161270:1:exon
subclass of: SO_0000011

113457440
type: Gene
SIO_000068: ncbigene

position:6145932:1
position: 6145932
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6161270:1
position: 6161270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6145932-6161270:1:exon

LOC113457440
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 79684
nc RNA class: lncRNA
gene: LOC113457440
product: uncharacterized LOC113457440
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XR_003378014.1
SIO_010081: LOC113457440
subclass of: SO_0000673
so part of: LOC113457440
location: join(6145932..6146030,6147331..6147480,6148236..6148332,6152450..6152688,6153560..6153630,6161176..6161270)
location: region:6145932-6161270:1
so has part: feature:6145932-6146030:1:exon
so has part: feature:6147331-6147480:1:exon
so has part: feature:6148236-6148332:1:exon
so has part: feature:6152450-6152688:1:exon
so has part: feature:6153560-6153630:1:exon
so has part: feature:6161176-6161270:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6145932-6146030:1:exon

position:6146030:1
position: 6146030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6147331-6147480:1:exon

position:6147331:1
position: 6147331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6147480:1
position: 6147480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6148236-6148332:1:exon

position:6148236:1
position: 6148236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6148332:1
position: 6148332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6152450-6152688:1:exon

position:6152450:1
position: 6152450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6152688:1
position: 6152688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6153560-6153630:1:exon

position:6153560:1
position: 6153560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6153630:1
position: 6153630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6161176-6161270:1:exon

position:6161176:1
position: 6161176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC113457461
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC113457461
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
so part of: sequence
location: complement(6187945..6188055)
location: region:6187945-6188055:-1
so has part: feature:6187945-6188055:-1:exon

113457461
type: Gene
SIO_000068: ncbigene

position:6187945:-1
position: 6187945
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6188055:-1
position: 6188055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6187945-6188055:-1:exon

LOC113457461
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC113457461
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00012
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
SIO_010081: LOC113457461
subclass of: SO_0000673
so part of: LOC113457461
location: complement(6187945..6188055)
location: region:6187945-6188055:-1
so has part: feature:6187945-6188055:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6187945-6188055:-1:exon

LOC113457425
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC113457425
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6313577..6320769
location: region:6313577-6320769:1
so has part: feature:6313577-6320769:1:exon
subclass of: SO_0000011

113457425
type: Gene
SIO_000068: ncbigene

position:6313577:1
position: 6313577
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6320769:1
position: 6320769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6313577-6320769:1:exon

LOC113457425
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 79684
nc RNA class: lncRNA
gene: LOC113457425
product: uncharacterized LOC113457425
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_003378005.1
SIO_010081: LOC113457425
subclass of: SO_0000673
so part of: LOC113457425
location: join(6313577..6313636,6317190..6317253,6320621..6320769)
location: region:6313577-6320769:1
so has part: feature:6313577-6313636:1:exon
so has part: feature:6317190-6317253:1:exon
so has part: feature:6320621-6320769:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6313577-6313636:1:exon

position:6313636:1
position: 6313636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6317190-6317253:1:exon

position:6317190:1
position: 6317190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6317253:1
position: 6317253
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6320621-6320769:1:exon

position:6320621:1
position: 6320621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Thoc2
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: Thoc2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6329186..6440782
location: region:6329186-6440782:1
so has part: feature:6329186-6440782:1:exon
subclass of: SO_0000010

101982507
type: Gene
SIO_000068: ncbigene

position:6329186:1
position: 6329186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6440782:1
position: 6440782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6329186-6440782:1:exon

Thoc2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Thoc2
product: THO complex 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_013350464.1
SIO_010081: Thoc2
subclass of: SO_0000673
so part of: Thoc2
location: join(6329186..6329284,6344781..6344839,6347640..6347731,6349516..6349567,6354873..6354943,6355920..6356041,6356801..6356934,6369912..6370078,6373110..6373202,6376367..6376522,6377067..6377239,6378333..6378528,6389606..6389647,6390074..6390204,6390300..6390401,6392358..6392442,6393343..6393436,6393796..6393876,6395852..6395948,6398873..6398990,6400228..6400407,6402078..6402242,6405661..6405936,6406807..6406948,6407373..6407530,6408578..6408706,6408982..6409113,6409205..6409389,6409898..6410076,6410295..6410397,6421931..6422361,6422552..6422610,6423979..6424095,6428900..6429037,6429367..6429436,6429519..6429679,6432019..6432095,6432582..6432627,6437954..6440782)
location: region:6329186-6440782:1
so has part: feature:6329186-6329284:1:exon
so has part: feature:6344781-6344839:1:exon
so has part: feature:6347640-6347731:1:exon
so has part: feature:6349516-6349567:1:exon
so has part: feature:6354873-6354943:1:exon
so has part: feature:6355920-6356041:1:exon
so has part: feature:6356801-6356934:1:exon
so has part: feature:6369912-6370078:1:exon
so has part: feature:6373110-6373202:1:exon
so has part: feature:6376367-6376522:1:exon
so has part: feature:6377067-6377239:1:exon
so has part: feature:6378333-6378528:1:exon
so has part: feature:6389606-6389647:1:exon
so has part: feature:6390074-6390204:1:exon
so has part: feature:6390300-6390401:1:exon
so has part: feature:6392358-6392442:1:exon
so has part: feature:6393343-6393436:1:exon
so has part: feature:6393796-6393876:1:exon
so has part: feature:6395852-6395948:1:exon
so has part: feature:6398873-6398990:1:exon
so has part: feature:6400228-6400407:1:exon
so has part: feature:6402078-6402242:1:exon
so has part: feature:6405661-6405936:1:exon
so has part: feature:6406807-6406948:1:exon
so has part: feature:6407373-6407530:1:exon
so has part: feature:6408578-6408706:1:exon
so has part: feature:6408982-6409113:1:exon
so has part: feature:6409205-6409389:1:exon
so has part: feature:6409898-6410076:1:exon
so has part: feature:6410295-6410397:1:exon
so has part: feature:6421931-6422361:1:exon
so has part: feature:6422552-6422610:1:exon
so has part: feature:6423979-6424095:1:exon
so has part: feature:6428900-6429037:1:exon
so has part: feature:6429367-6429436:1:exon
so has part: feature:6429519-6429679:1:exon
so has part: feature:6432019-6432095:1:exon
so has part: feature:6432582-6432627:1:exon
so has part: feature:6437954-6440782:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6329186-6329284:1:exon

position:6329284:1
position: 6329284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6344781-6344839:1:exon

position:6344781:1
position: 6344781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6344839:1
position: 6344839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6347640-6347731:1:exon

position:6347640:1
position: 6347640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6347731:1
position: 6347731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6349516-6349567:1:exon

position:6349516:1
position: 6349516
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6349567:1
position: 6349567
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6354873-6354943:1:exon

position:6354873:1
position: 6354873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6354943:1
position: 6354943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6355920-6356041:1:exon

position:6355920:1
position: 6355920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6356041:1
position: 6356041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:6356801-6356934:1:exon

position:6356801:1
position: 6356801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6356934:1
position: 6356934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:6369912-6370078:1:exon

position:6369912:1
position: 6369912
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6370078:1
position: 6370078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:6373110-6373202:1:exon

position:6373110:1
position: 6373110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6373202:1
position: 6373202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:6376367-6376522:1:exon

position:6376367:1
position: 6376367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6376522:1
position: 6376522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:6377067-6377239:1:exon

position:6377067:1
position: 6377067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6377239:1
position: 6377239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:6378333-6378528:1:exon

position:6378333:1
position: 6378333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6378528:1
position: 6378528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:6389606-6389647:1:exon

position:6389606:1
position: 6389606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6389647:1
position: 6389647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:6390074-6390204:1:exon

position:6390074:1
position: 6390074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6390204:1
position: 6390204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:6390300-6390401:1:exon

position:6390300:1
position: 6390300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6390401:1
position: 6390401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:6392358-6392442:1:exon

position:6392358:1
position: 6392358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6392442:1
position: 6392442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:6393343-6393436:1:exon

position:6393343:1
position: 6393343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6393436:1
position: 6393436
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:6393796-6393876:1:exon

position:6393796:1
position: 6393796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6393876:1
position: 6393876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:6395852-6395948:1:exon

position:6395852:1
position: 6395852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6395948:1
position: 6395948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:6398873-6398990:1:exon

position:6398873:1
position: 6398873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6398990:1
position: 6398990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:6400228-6400407:1:exon

position:6400228:1
position: 6400228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6400407:1
position: 6400407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:6402078-6402242:1:exon

position:6402078:1
position: 6402078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6402242:1
position: 6402242
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:6405661-6405936:1:exon

position:6405661:1
position: 6405661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6405936:1
position: 6405936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:6406807-6406948:1:exon

position:6406807:1
position: 6406807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6406948:1
position: 6406948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:6407373-6407530:1:exon

position:6407373:1
position: 6407373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6407530:1
position: 6407530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:6408578-6408706:1:exon

position:6408578:1
position: 6408578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6408706:1
position: 6408706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:6408982-6409113:1:exon

position:6408982:1
position: 6408982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6409113:1
position: 6409113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:6409205-6409389:1:exon

position:6409205:1
position: 6409205
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6409389:1
position: 6409389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:6409898-6410076:1:exon

position:6409898:1
position: 6409898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6410076:1
position: 6410076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:6410295-6410397:1:exon

position:6410295:1
position: 6410295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6410397:1
position: 6410397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:6421931-6422361:1:exon

position:6421931:1
position: 6421931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6422361:1
position: 6422361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 32
SIO_000628: feature:6422552-6422610:1:exon

position:6422552:1
position: 6422552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6422610:1
position: 6422610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 33
SIO_000628: feature:6423979-6424095:1:exon

position:6423979:1
position: 6423979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6424095:1
position: 6424095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 34
SIO_000628: feature:6428900-6429037:1:exon

position:6428900:1
position: 6428900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6429037:1
position: 6429037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 35
SIO_000628: feature:6429367-6429436:1:exon

position:6429367:1
position: 6429367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6429436:1
position: 6429436
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 36
SIO_000628: feature:6429519-6429679:1:exon

position:6429519:1
position: 6429519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6429679:1
position: 6429679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 37
SIO_000628: feature:6432019-6432095:1:exon

position:6432019:1
position: 6432019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6432095:1
position: 6432095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 38
SIO_000628: feature:6432582-6432627:1:exon

position:6432582:1
position: 6432582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6432627:1
position: 6432627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 39
SIO_000628: feature:6437954-6440782:1:exon

position:6437954:1
position: 6437954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Thoc2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Thoc2
product: THO complex 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_013350465.2
SIO_010081: Thoc2
subclass of: SO_0000673
so part of: Thoc2
location: join(6329214..6329284,6344781..6344839,6347640..6347731,6349516..6349567,6354873..6354943,6355920..6356041,6356801..6356934,6369912..6370078,6373110..6373202,6376367..6376522,6377067..6377239,6378333..6378528,6389606..6389647,6390074..6390204,6390300..6390401,6392358..6392442,6393343..6393436,6393796..6393876,6395852..6395948,6398873..6398990,6400228..6400407,6402078..6402242,6405661..6405936,6406807..6406948,6407373..6407530,6408578..6408706,6408982..6409113,6409205..6409389,6409898..6410076,6410295..6410397,6421931..6422361,6422552..6422610,6424060..6424095,6428900..6429037,6429367..6429436,6429519..6429679,6432019..6432095,6432582..6432627,6437954..6440782)
location: region:6329214-6440782:1
so has part: feature:6329214-6329284:1:exon
so has part: feature:6344781-6344839:1:exon
so has part: feature:6347640-6347731:1:exon
so has part: feature:6349516-6349567:1:exon
so has part: feature:6354873-6354943:1:exon
so has part: feature:6355920-6356041:1:exon
so has part: feature:6356801-6356934:1:exon
so has part: feature:6369912-6370078:1:exon
so has part: feature:6373110-6373202:1:exon
so has part: feature:6376367-6376522:1:exon
so has part: feature:6377067-6377239:1:exon
so has part: feature:6378333-6378528:1:exon
so has part: feature:6389606-6389647:1:exon
so has part: feature:6390074-6390204:1:exon
so has part: feature:6390300-6390401:1:exon
so has part: feature:6392358-6392442:1:exon
so has part: feature:6393343-6393436:1:exon
so has part: feature:6393796-6393876:1:exon
so has part: feature:6395852-6395948:1:exon
so has part: feature:6398873-6398990:1:exon
so has part: feature:6400228-6400407:1:exon
so has part: feature:6402078-6402242:1:exon
so has part: feature:6405661-6405936:1:exon
so has part: feature:6406807-6406948:1:exon
so has part: feature:6407373-6407530:1:exon
so has part: feature:6408578-6408706:1:exon
so has part: feature:6408982-6409113:1:exon
so has part: feature:6409205-6409389:1:exon
so has part: feature:6409898-6410076:1:exon
so has part: feature:6410295-6410397:1:exon
so has part: feature:6421931-6422361:1:exon
so has part: feature:6422552-6422610:1:exon
so has part: feature:6424060-6424095:1:exon
so has part: feature:6428900-6429037:1:exon
so has part: feature:6429367-6429436:1:exon
so has part: feature:6429519-6429679:1:exon
so has part: feature:6432019-6432095:1:exon
so has part: feature:6432582-6432627:1:exon
so has part: feature:6437954-6440782:1:exon

position:6329214:1
position: 6329214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6329214-6329284:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6344781-6344839:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6347640-6347731:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6349516-6349567:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6354873-6354943:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6355920-6356041:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6356801-6356934:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6369912-6370078:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6373110-6373202:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6376367-6376522:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6377067-6377239:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6378333-6378528:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:6389606-6389647:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6390074-6390204:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:6390300-6390401:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:6392358-6392442:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:6393343-6393436:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:6393796-6393876:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:6395852-6395948:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:6398873-6398990:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:6400228-6400407:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:6402078-6402242:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:6405661-6405936:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:6406807-6406948:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:6407373-6407530:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:6408578-6408706:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:6408982-6409113:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:6409205-6409389:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:6409898-6410076:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:6410295-6410397:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:6421931-6422361:1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:6422552-6422610:1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:6424060-6424095:1:exon

position:6424060:1
position: 6424060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 34
SIO_000628: feature:6428900-6429037:1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:6429367-6429436:1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:6429519-6429679:1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:6432019-6432095:1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:6432582-6432627:1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:6437954-6440782:1:exon

Thoc2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Thoc2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: THO complex subunit 2 isoform X1
translation: MAAATVLVPAEWIKNWEKSGRGEFLHLCRILSENKSHDSSTYRDFQQALYELSYHVIKGNLKHEQASSILNDISEFREDMPSILADVFCILDIETNCLEEKSKRDYFTQLVLACLYLVSDTVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELGQDLSGNITSDLILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLESYMSMCEPQTLCHILGFKFKFYQEPSGETPSSLYRVAAVLLQFNLIDLDDLYVHLLPADNCIMDEYKREIVEAKQIVRKLTMVVLSTEKLDERDKEKDKDDEKVEKPPDNQKLGLLEALLKIGDWQHAQNIMDQMPPYYAASHKLIALAICKLIHITVEPLYRRVGVPKGAKGSTVSALQNKLAPKQVESFDDLRRDVFNMFCYLGPHLSHDPILFAKVVRIGKSFMKEFQSDGSKQEDKEKTEVILSCLLSITDQVLLPSLSLMDCNACMSEELWGMFKTFPYQHRYRLYGQWKNETYNGHPLLVKVKAQTIDRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQKYDNLITPVVDSLKYLTSLNYDVLAYCIIEALANPEKEKMKHDDTTISNWLQSLASFCGAVFRKYPIDLAGLLQYVANQLKAGKSFDLLILKEVVQKMAGIEITEEMTTEQLEAMTGGEQLKAEGGYFGQIRNTKKSSQRLKDALLDHDLALPLCLLMAQQRNGVIFQEGGEKHLKLVGKLYDQCHDTLVQFGGFLASNLSTEDYIKRVPSIDVLCNEFHTPHDAAFFLSRPMYAHHISSKYDELKKSEKGSKQQHKVHKYITSCEMVMAPVHEAVVSLHVSKVWDDISPQFYATFWSLTMYDLAVPHTSYEREVNKLKVQMKAIDDNQEMPPNKKKKEKERCTALQDKLLEEEKKQMEHVQRVLQRLKLEKDNWLLAKSTKNETITKFLQLCIFPRCIFSAIDAVYCARFVELVHQQKTPNFSTLLCYDRVFSDIIYTVASCTENEASRYGRFLCCMLETVTRWHSDRATYEKECGNYPGFLTILRATGFDGGNKADQLDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPWYPKVLNLGQALERRVNKICQEEKEKRPDLYALAMGYWGLLKCRKSHMIPENEFHHKDPPPRNAVASVQNGPGGGTSSSSLGSASKSDESGTEETDKPRERSQCGTKAVNKASGTTPKGNSSNGNSGSNSNKAVKENDKEKVKEKEKEKKEKTPATTPEARVLGKDSKEKPKEERPNKDEKARETKERTPKSDKEKEKFKKEEKAKDEKFKTTIPSIESKSTQEREREKEPSRERDVSKEMKSKENVKGGEKTPVSGSLKSPVPRSDLSEPEREQKRRKIDTHPSPSHSSTVKVTDILPKVPLGSENYASSPVISIHFLQDSLIDLKESSAKLYINHTPPPLSKSKEREMDKKDLDKSRERSREREKKDEKDRKERKRDHSNNDREVPPDITKRRKEENGTMGVSKHKSESPCESQYPNEKDKEKNKSKSSGKEKGSSDSFKSEKMDKISSGGKKESRHDKEKIEKKEKRDSSGGKEEKKHHKSSDKHR
SIO_010081: Thoc2
subclass of: SO_0000673
so part of: Thoc2
location: join(6329214..6329284,6344781..6344839,6347640..6347731,6349516..6349567,6354873..6354943,6355920..6356041,6356801..6356934,6369912..6370078,6373110..6373202,6376367..6376522,6377067..6377239,6378333..6378528,6389606..6389647,6390074..6390204,6390300..6390401,6392358..6392442,6393343..6393436,6393796..6393876,6395852..6395948,6398873..6398990,6400228..6400407,6402078..6402242,6405661..6405936,6406807..6406948,6407373..6407530,6408578..6408706,6408982..6409113,6409205..6409389,6409898..6410076,6410295..6410397,6421931..6422361,6422552..6422610,6423979..6424095,6428900..6429037,6429367..6429436,6429519..6429679,6432019..6432095,6432582..6432609)
location: region:6329214-6432609:1
so has part: feature:6329214-6329284:1:exon
so has part: feature:6344781-6344839:1:exon
so has part: feature:6347640-6347731:1:exon
so has part: feature:6349516-6349567:1:exon
so has part: feature:6354873-6354943:1:exon
so has part: feature:6355920-6356041:1:exon
so has part: feature:6356801-6356934:1:exon
so has part: feature:6369912-6370078:1:exon
so has part: feature:6373110-6373202:1:exon
so has part: feature:6376367-6376522:1:exon
so has part: feature:6377067-6377239:1:exon
so has part: feature:6378333-6378528:1:exon
so has part: feature:6389606-6389647:1:exon
so has part: feature:6390074-6390204:1:exon
so has part: feature:6390300-6390401:1:exon
so has part: feature:6392358-6392442:1:exon
so has part: feature:6393343-6393436:1:exon
so has part: feature:6393796-6393876:1:exon
so has part: feature:6395852-6395948:1:exon
so has part: feature:6398873-6398990:1:exon
so has part: feature:6400228-6400407:1:exon
so has part: feature:6402078-6402242:1:exon
so has part: feature:6405661-6405936:1:exon
so has part: feature:6406807-6406948:1:exon
so has part: feature:6407373-6407530:1:exon
so has part: feature:6408578-6408706:1:exon
so has part: feature:6408982-6409113:1:exon
so has part: feature:6409205-6409389:1:exon
so has part: feature:6409898-6410076:1:exon
so has part: feature:6410295-6410397:1:exon
so has part: feature:6421931-6422361:1:exon
so has part: feature:6422552-6422610:1:exon
so has part: feature:6423979-6424095:1:exon
so has part: feature:6428900-6429037:1:exon
so has part: feature:6429367-6429436:1:exon
so has part: feature:6429519-6429679:1:exon
so has part: feature:6432019-6432095:1:exon
so has part: feature:6432582-6432609:1:exon

XP_013205918.1
type: Protein
SIO_000068: ncbiprotein

position:6432609:1
position: 6432609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6329214-6329284:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6344781-6344839:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6347640-6347731:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6349516-6349567:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6354873-6354943:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6355920-6356041:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6356801-6356934:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6369912-6370078:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6373110-6373202:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6376367-6376522:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6377067-6377239:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6378333-6378528:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:6389606-6389647:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6390074-6390204:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:6390300-6390401:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:6392358-6392442:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:6393343-6393436:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:6393796-6393876:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:6395852-6395948:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:6398873-6398990:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:6400228-6400407:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:6402078-6402242:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:6405661-6405936:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:6406807-6406948:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:6407373-6407530:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:6408578-6408706:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:6408982-6409113:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:6409205-6409389:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:6409898-6410076:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:6410295-6410397:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:6421931-6422361:1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:6422552-6422610:1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:6423979-6424095:1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:6428900-6429037:1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:6429367-6429436:1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:6429519-6429679:1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:6432019-6432095:1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:6432582-6432609:1:exon

Thoc2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Thoc2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: THO complex subunit 2 isoform X2
translation: MAAATVLVPAEWIKNWEKSGRGEFLHLCRILSENKSHDSSTYRDFQQALYELSYHVIKGNLKHEQASSILNDISEFREDMPSILADVFCILDIETNCLEEKSKRDYFTQLVLACLYLVSDTVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELGQDLSGNITSDLILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLESYMSMCEPQTLCHILGFKFKFYQEPSGETPSSLYRVAAVLLQFNLIDLDDLYVHLLPADNCIMDEYKREIVEAKQIVRKLTMVVLSTEKLDERDKEKDKDDEKVEKPPDNQKLGLLEALLKIGDWQHAQNIMDQMPPYYAASHKLIALAICKLIHITVEPLYRRVGVPKGAKGSTVSALQNKLAPKQVESFDDLRRDVFNMFCYLGPHLSHDPILFAKVVRIGKSFMKEFQSDGSKQEDKEKTEVILSCLLSITDQVLLPSLSLMDCNACMSEELWGMFKTFPYQHRYRLYGQWKNETYNGHPLLVKVKAQTIDRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQKYDNLITPVVDSLKYLTSLNYDVLAYCIIEALANPEKEKMKHDDTTISNWLQSLASFCGAVFRKYPIDLAGLLQYVANQLKAGKSFDLLILKEVVQKMAGIEITEEMTTEQLEAMTGGEQLKAEGGYFGQIRNTKKSSQRLKDALLDHDLALPLCLLMAQQRNGVIFQEGGEKHLKLVGKLYDQCHDTLVQFGGFLASNLSTEDYIKRVPSIDVLCNEFHTPHDAAFFLSRPMYAHHISSKYDELKKSEKGSKQQHKVHKYITSCEMVMAPVHEAVVSLHVSKVWDDISPQFYATFWSLTMYDLAVPHTSYEREVNKLKVQMKAIDDNQEMPPNKKKKEKERCTALQDKLLEEEKKQMEHVQRVLQRLKLEKDNWLLAKSTKNETITKFLQLCIFPRCIFSAIDAVYCARFVELVHQQKTPNFSTLLCYDRVFSDIIYTVASCTENEASRYGRFLCCMLETVTRWHSDRATYEKECGNYPGFLTILRATGFDGGNKADQLDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPWYPKVLNLGQALERRVNKICQEEKEKRPDLYALAMGYWGLLKCRKSHMIPENEFHHKDPPPRNAVASVQNGPGGGTSSSSLGSASKSDESGTEETDKPRERSQCGTKAVNKASGTTPKGNSSNGNSGSNSNKAVKENDKEKVKEKEKEKKEKTPATTPEARVLGKDSKEKPKEERPNKDEKARETKERTPKSDKEKEKFKKEEKAKDEKFKTTIPSIESKSTQEREREKEPSRERDVSKEMKSKENVKGGEKTPVSGSLKSPVPRSDLSEPEREQKRRKIDTHPSPSHSSTVKDSLIDLKESSAKLYINHTPPPLSKSKEREMDKKDLDKSRERSREREKKDEKDRKERKRDHSNNDREVPPDITKRRKEENGTMGVSKHKSESPCESQYPNEKDKEKNKSKSSGKEKGSSDSFKSEKMDKISSGGKKESRHDKEKIEKKEKRDSSGGKEEKKHHKSSDKHR
SIO_010081: Thoc2
subclass of: SO_0000673
so part of: Thoc2
location: join(6329214..6329284,6344781..6344839,6347640..6347731,6349516..6349567,6354873..6354943,6355920..6356041,6356801..6356934,6369912..6370078,6373110..6373202,6376367..6376522,6377067..6377239,6378333..6378528,6389606..6389647,6390074..6390204,6390300..6390401,6392358..6392442,6393343..6393436,6393796..6393876,6395852..6395948,6398873..6398990,6400228..6400407,6402078..6402242,6405661..6405936,6406807..6406948,6407373..6407530,6408578..6408706,6408982..6409113,6409205..6409389,6409898..6410076,6410295..6410397,6421931..6422361,6422552..6422610,6424060..6424095,6428900..6429037,6429367..6429436,6429519..6429679,6432019..6432095,6432582..6432609)
location: region:6329214-6432609:1
so has part: feature:6329214-6329284:1:exon
so has part: feature:6344781-6344839:1:exon
so has part: feature:6347640-6347731:1:exon
so has part: feature:6349516-6349567:1:exon
so has part: feature:6354873-6354943:1:exon
so has part: feature:6355920-6356041:1:exon
so has part: feature:6356801-6356934:1:exon
so has part: feature:6369912-6370078:1:exon
so has part: feature:6373110-6373202:1:exon
so has part: feature:6376367-6376522:1:exon
so has part: feature:6377067-6377239:1:exon
so has part: feature:6378333-6378528:1:exon
so has part: feature:6389606-6389647:1:exon
so has part: feature:6390074-6390204:1:exon
so has part: feature:6390300-6390401:1:exon
so has part: feature:6392358-6392442:1:exon
so has part: feature:6393343-6393436:1:exon
so has part: feature:6393796-6393876:1:exon
so has part: feature:6395852-6395948:1:exon
so has part: feature:6398873-6398990:1:exon
so has part: feature:6400228-6400407:1:exon
so has part: feature:6402078-6402242:1:exon
so has part: feature:6405661-6405936:1:exon
so has part: feature:6406807-6406948:1:exon
so has part: feature:6407373-6407530:1:exon
so has part: feature:6408578-6408706:1:exon
so has part: feature:6408982-6409113:1:exon
so has part: feature:6409205-6409389:1:exon
so has part: feature:6409898-6410076:1:exon
so has part: feature:6410295-6410397:1:exon
so has part: feature:6421931-6422361:1:exon
so has part: feature:6422552-6422610:1:exon
so has part: feature:6424060-6424095:1:exon
so has part: feature:6428900-6429037:1:exon
so has part: feature:6429367-6429436:1:exon
so has part: feature:6429519-6429679:1:exon
so has part: feature:6432019-6432095:1:exon
so has part: feature:6432582-6432609:1:exon

XP_013205919.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6329214-6329284:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6344781-6344839:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6347640-6347731:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6349516-6349567:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6354873-6354943:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6355920-6356041:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6356801-6356934:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6369912-6370078:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6373110-6373202:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6376367-6376522:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6377067-6377239:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6378333-6378528:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:6389606-6389647:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6390074-6390204:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:6390300-6390401:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:6392358-6392442:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:6393343-6393436:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:6393796-6393876:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:6395852-6395948:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:6398873-6398990:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:6400228-6400407:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:6402078-6402242:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:6405661-6405936:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:6406807-6406948:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:6407373-6407530:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:6408578-6408706:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:6408982-6409113:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:6409205-6409389:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:6409898-6410076:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:6410295-6410397:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:6421931-6422361:1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:6422552-6422610:1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:6424060-6424095:1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:6428900-6429037:1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:6429367-6429436:1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:6429519-6429679:1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:6432019-6432095:1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:6432582-6432609:1:exon

LOC101992980
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC101992980
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 6621719..6623028
location: region:6621719-6623028:1
so has part: feature:6621719-6623028:1:exon

101992980
type: Gene
SIO_000068: ncbigene

position:6621719:1
position: 6621719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6623028:1
position: 6623028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6621719-6623028:1:exon

LOC101992980
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC101992980
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 73% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC101992980
subclass of: SO_0000673
so part of: LOC101992980
location: 6621719..6621853
location: region:6621719-6621853:1
so has part: feature:6621719-6621853:1:exon

position:6621853:1
position: 6621853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6621719-6621853:1:exon

LOC101992980
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC101992980
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 73% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC101992980
subclass of: SO_0000673
so part of: LOC101992980
location: 6622252..6623028
location: region:6622252-6623028:1
so has part: feature:6622252-6623028:1:exon

position:6622252:1
position: 6622252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6622252-6623028:1:exon

Gria3
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: Gria3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(6635501..6922362)
location: region:6635501-6922362:-1
so has part: feature:6635501-6922362:-1:exon
subclass of: SO_0000010

101982798
type: Gene
SIO_000068: ncbigene

position:6635501:-1
position: 6635501
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6922362:-1
position: 6922362
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6635501-6922362:-1:exon

Gria3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Gria3
product: glutamate ionotropic receptor AMPA type subunit 3, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
transcript id: XM_005358429.2
SIO_010081: Gria3
subclass of: SO_0000673
so part of: Gria3
location: complement(join(6635501..6637746,6642768..6643015,6645577..6645691,6660780..6661027,6689240..6689438,6700510..6700886,6712440..6712646,6714856..6714963,6715776..6715880,6719726..6719893,6722918..6723079,6742913..6742966,6775618..6775805,6839214..6839453,6920736..6920894,6922056..6922362))
location: region:6635501-6922362:-1
so has part: feature:6922056-6922362:-1:exon
so has part: feature:6920736-6920894:-1:exon
so has part: feature:6839214-6839453:-1:exon
so has part: feature:6775618-6775805:-1:exon
so has part: feature:6742913-6742966:-1:exon
so has part: feature:6722918-6723079:-1:exon
so has part: feature:6719726-6719893:-1:exon
so has part: feature:6715776-6715880:-1:exon
so has part: feature:6714856-6714963:-1:exon
so has part: feature:6712440-6712646:-1:exon
so has part: feature:6700510-6700886:-1:exon
so has part: feature:6689240-6689438:-1:exon
so has part: feature:6660780-6661027:-1:exon
so has part: feature:6645577-6645691:-1:exon
so has part: feature:6642768-6643015:-1:exon
so has part: feature:6635501-6637746:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6922056-6922362:-1:exon

position:6922056:-1
position: 6922056
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6920736-6920894:-1:exon

position:6920736:-1
position: 6920736
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6920894:-1
position: 6920894
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6839214-6839453:-1:exon

position:6839214:-1
position: 6839214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6839453:-1
position: 6839453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6775618-6775805:-1:exon

position:6775618:-1
position: 6775618
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6775805:-1
position: 6775805
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6742913-6742966:-1:exon

position:6742913:-1
position: 6742913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6742966:-1
position: 6742966
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6722918-6723079:-1:exon

position:6722918:-1
position: 6722918
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6723079:-1
position: 6723079
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:6719726-6719893:-1:exon

position:6719726:-1
position: 6719726
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6719893:-1
position: 6719893
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:6715776-6715880:-1:exon

position:6715776:-1
position: 6715776
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6715880:-1
position: 6715880
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:6714856-6714963:-1:exon

position:6714856:-1
position: 6714856
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6714963:-1
position: 6714963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:6712440-6712646:-1:exon

position:6712440:-1
position: 6712440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6712646:-1
position: 6712646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:6700510-6700886:-1:exon

position:6700510:-1
position: 6700510
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6700886:-1
position: 6700886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:6689240-6689438:-1:exon

position:6689240:-1
position: 6689240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6689438:-1
position: 6689438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:6660780-6661027:-1:exon

position:6660780:-1
position: 6660780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6661027:-1
position: 6661027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:6645577-6645691:-1:exon

position:6645577:-1
position: 6645577
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6645691:-1
position: 6645691
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:6642768-6643015:-1:exon

position:6642768:-1
position: 6642768
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6643015:-1
position: 6643015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:6635501-6637746:-1:exon

position:6637746:-1
position: 6637746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Gria3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Gria3
product: glutamate ionotropic receptor AMPA type subunit 3, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
transcript id: XM_005358430.3
SIO_010081: Gria3
subclass of: SO_0000673
so part of: Gria3
location: complement(join(6635501..6637746,6642768..6643015,6660115..6660229,6660780..6661027,6689240..6689438,6700510..6700886,6712440..6712646,6714856..6714963,6715776..6715880,6719726..6719893,6722918..6723079,6742913..6742966,6775618..6775805,6839214..6839453,6920736..6920894,6922056..6922254))
location: region:6635501-6922254:-1
so has part: feature:6922056-6922254:-1:exon
so has part: feature:6920736-6920894:-1:exon
so has part: feature:6839214-6839453:-1:exon
so has part: feature:6775618-6775805:-1:exon
so has part: feature:6742913-6742966:-1:exon
so has part: feature:6722918-6723079:-1:exon
so has part: feature:6719726-6719893:-1:exon
so has part: feature:6715776-6715880:-1:exon
so has part: feature:6714856-6714963:-1:exon
so has part: feature:6712440-6712646:-1:exon
so has part: feature:6700510-6700886:-1:exon
so has part: feature:6689240-6689438:-1:exon
so has part: feature:6660780-6661027:-1:exon
so has part: feature:6660115-6660229:-1:exon
so has part: feature:6642768-6643015:-1:exon
so has part: feature:6635501-6637746:-1:exon

position:6922254:-1
position: 6922254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6922056-6922254:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6920736-6920894:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6839214-6839453:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6775618-6775805:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6742913-6742966:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6722918-6723079:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6719726-6719893:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6715776-6715880:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6714856-6714963:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6712440-6712646:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6700510-6700886:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6689240-6689438:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:6660780-6661027:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6660115-6660229:-1:exon

position:6660115:-1
position: 6660115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6660229:-1
position: 6660229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:6642768-6643015:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:6635501-6637746:-1:exon

Gria3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Gria3
product: glutamate ionotropic receptor AMPA type subunit 3, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XM_026784914.1
SIO_010081: Gria3
subclass of: SO_0000673
so part of: Gria3
location: complement(join(6635501..6637746,6642757..6643015,6645577..6645691,6660780..6661027,6689240..6689438,6700510..6700886,6712440..6712646,6714856..6714963,6715776..6715880,6719726..6719893,6722918..6723079,6742913..6742966,6775618..6775805,6839214..6839453,6920736..6920894,6922056..6922146))
location: region:6635501-6922146:-1
so has part: feature:6922056-6922146:-1:exon
so has part: feature:6920736-6920894:-1:exon
so has part: feature:6839214-6839453:-1:exon
so has part: feature:6775618-6775805:-1:exon
so has part: feature:6742913-6742966:-1:exon
so has part: feature:6722918-6723079:-1:exon
so has part: feature:6719726-6719893:-1:exon
so has part: feature:6715776-6715880:-1:exon
so has part: feature:6714856-6714963:-1:exon
so has part: feature:6712440-6712646:-1:exon
so has part: feature:6700510-6700886:-1:exon
so has part: feature:6689240-6689438:-1:exon
so has part: feature:6660780-6661027:-1:exon
so has part: feature:6645577-6645691:-1:exon
so has part: feature:6642757-6643015:-1:exon
so has part: feature:6635501-6637746:-1:exon

position:6922146:-1
position: 6922146
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6922056-6922146:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6920736-6920894:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6839214-6839453:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6775618-6775805:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6742913-6742966:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6722918-6723079:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6719726-6719893:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6715776-6715880:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6714856-6714963:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6712440-6712646:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6700510-6700886:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6689240-6689438:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:6660780-6661027:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6645577-6645691:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:6642757-6643015:-1:exon

position:6642757:-1
position: 6642757
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:6635501-6637746:-1:exon

Gria3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Gria3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: glutamate receptor 3 isoform X1
translation: MGQSVLRAVFFLVLGLLGHSHGGFPNTISIGGLFMRNTVQEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSFPTDADVQFVIQMRPALKGAILSLLGYYKWEKFVYLYDTERGFSILQAIMEAAVQNNWQVTARSVGNIKDIQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGFTDILLERVMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYLRRQRVDVSRRGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKAGYWNEYERFVPFSDQQISNDSASSENRTIVVTTILESPYVMYKKNHEQLEGNERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHLEDNNEEPRDPQSPPDPPNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGSTKEFFRRSKIAVYEKMWSYMKSAEPSVFTKTTADGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSALRTPVNLAVLKLSEQGILDKLKNKWWYDKGECGAKDSGSKDKTSALSLSNVAGVFYILVGGLGLAMMVALIEFCYKSRAESKRMKLTKNTQNFKPAPATNTQNYATYREGYNVYGTESVKI
SIO_010081: Gria3
subclass of: SO_0000673
so part of: Gria3
location: complement(join(6642770..6643015,6645577..6645691,6660780..6661027,6689240..6689438,6700510..6700886,6712440..6712646,6714856..6714963,6715776..6715880,6719726..6719893,6722918..6723079,6742913..6742966,6775618..6775805,6839214..6839453,6920736..6920894,6922056..6922146))
location: region:6642770-6922146:-1
so has part: feature:6922056-6922146:-1:exon
so has part: feature:6920736-6920894:-1:exon
so has part: feature:6839214-6839453:-1:exon
so has part: feature:6775618-6775805:-1:exon
so has part: feature:6742913-6742966:-1:exon
so has part: feature:6722918-6723079:-1:exon
so has part: feature:6719726-6719893:-1:exon
so has part: feature:6715776-6715880:-1:exon
so has part: feature:6714856-6714963:-1:exon
so has part: feature:6712440-6712646:-1:exon
so has part: feature:6700510-6700886:-1:exon
so has part: feature:6689240-6689438:-1:exon
so has part: feature:6660780-6661027:-1:exon
so has part: feature:6645577-6645691:-1:exon
so has part: feature:6642770-6643015:-1:exon

XP_026640715.1
type: Protein
SIO_000068: ncbiprotein

position:6642770:-1
position: 6642770
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6922056-6922146:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6920736-6920894:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6839214-6839453:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6775618-6775805:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6742913-6742966:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6722918-6723079:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6719726-6719893:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6715776-6715880:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6714856-6714963:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6712440-6712646:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6700510-6700886:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6689240-6689438:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:6660780-6661027:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6645577-6645691:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:6642770-6643015:-1:exon

Gria3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Gria3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: glutamate receptor 3 isoform X1
translation: MGQSVLRAVFFLVLGLLGHSHGGFPNTISIGGLFMRNTVQEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSFPTDADVQFVIQMRPALKGAILSLLGYYKWEKFVYLYDTERGFSILQAIMEAAVQNNWQVTARSVGNIKDIQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGFTDILLERVMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYLRRQRVDVSRRGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKAGYWNEYERFVPFSDQQISNDSASSENRTIVVTTILESPYVMYKKNHEQLEGNERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHLEDNNEEPRDPQSPPDPPNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGSTKEFFRRSKIAVYEKMWSYMKSAEPSVFTKTTADGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSALRTPVNLAVLKLSEQGILDKLKNKWWYDKGECGAKDSGSKDKTSALSLSNVAGVFYILVGGLGLAMMVALIEFCYKSRAESKRMKLTKNTQNFKPAPATNTQNYATYREGYNVYGTESVKI
SIO_010081: Gria3
subclass of: SO_0000673
so part of: Gria3
location: complement(join(6642770..6643015,6645577..6645691,6660780..6661027,6689240..6689438,6700510..6700886,6712440..6712646,6714856..6714963,6715776..6715880,6719726..6719893,6722918..6723079,6742913..6742966,6775618..6775805,6839214..6839453,6920736..6920894,6922056..6922146))
location: region:6642770-6922146:-1
so has part: feature:6922056-6922146:-1:exon
so has part: feature:6920736-6920894:-1:exon
so has part: feature:6839214-6839453:-1:exon
so has part: feature:6775618-6775805:-1:exon
so has part: feature:6742913-6742966:-1:exon
so has part: feature:6722918-6723079:-1:exon
so has part: feature:6719726-6719893:-1:exon
so has part: feature:6715776-6715880:-1:exon
so has part: feature:6714856-6714963:-1:exon
so has part: feature:6712440-6712646:-1:exon
so has part: feature:6700510-6700886:-1:exon
so has part: feature:6689240-6689438:-1:exon
so has part: feature:6660780-6661027:-1:exon
so has part: feature:6645577-6645691:-1:exon
so has part: feature:6642770-6643015:-1:exon

XP_005358486.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6922056-6922146:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6920736-6920894:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6839214-6839453:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6775618-6775805:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6742913-6742966:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6722918-6723079:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6719726-6719893:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6715776-6715880:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6714856-6714963:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6712440-6712646:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6700510-6700886:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6689240-6689438:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:6660780-6661027:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6645577-6645691:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:6642770-6643015:-1:exon

Gria3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Gria3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: glutamate receptor 3 isoform X2
translation: MGQSVLRAVFFLVLGLLGHSHGGFPNTISIGGLFMRNTVQEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSFPTDADVQFVIQMRPALKGAILSLLGYYKWEKFVYLYDTERGFSILQAIMEAAVQNNWQVTARSVGNIKDIQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGFTDILLERVMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYLRRQRVDVSRRGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKAGYWNEYERFVPFSDQQISNDSASSENRTIVVTTILESPYVMYKKNHEQLEGNERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHLEDNNEEPRDPQSPPDPPNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGSTKEFFRRSKIAVYEKMWSYMKSAEPSVFTKTTADGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSALRNAVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGGGDSKDKTSALSLSNVAGVFYILVGGLGLAMMVALIEFCYKSRAESKRMKLTKNTQNFKPAPATNTQNYATYREGYNVYGTESVKI
SIO_010081: Gria3
subclass of: SO_0000673
so part of: Gria3
location: complement(join(6642770..6643015,6660115..6660229,6660780..6661027,6689240..6689438,6700510..6700886,6712440..6712646,6714856..6714963,6715776..6715880,6719726..6719893,6722918..6723079,6742913..6742966,6775618..6775805,6839214..6839453,6920736..6920894,6922056..6922146))
location: region:6642770-6922146:-1
so has part: feature:6922056-6922146:-1:exon
so has part: feature:6920736-6920894:-1:exon
so has part: feature:6839214-6839453:-1:exon
so has part: feature:6775618-6775805:-1:exon
so has part: feature:6742913-6742966:-1:exon
so has part: feature:6722918-6723079:-1:exon
so has part: feature:6719726-6719893:-1:exon
so has part: feature:6715776-6715880:-1:exon
so has part: feature:6714856-6714963:-1:exon
so has part: feature:6712440-6712646:-1:exon
so has part: feature:6700510-6700886:-1:exon
so has part: feature:6689240-6689438:-1:exon
so has part: feature:6660780-6661027:-1:exon
so has part: feature:6660115-6660229:-1:exon
so has part: feature:6642770-6643015:-1:exon

XP_005358487.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6922056-6922146:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6920736-6920894:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6839214-6839453:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6775618-6775805:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6742913-6742966:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6722918-6723079:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6719726-6719893:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6715776-6715880:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6714856-6714963:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6712440-6712646:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6700510-6700886:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6689240-6689438:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:6660780-6661027:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6660115-6660229:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:6642770-6643015:-1:exon

LOC101983550
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC101983550
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 7227521..7228053
location: region:7227521-7228053:1
so has part: feature:7227521-7228053:1:exon

101983550
type: Gene
SIO_000068: ncbigene

position:7227521:1
position: 7227521
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7228053:1
position: 7228053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7227521-7228053:1:exon

LOC101983550
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC101983550
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
pseudo: true
SIO_010081: LOC101983550
subclass of: SO_0000673
so part of: LOC101983550
location: 7227521..7228053
location: region:7227521-7228053:1
so has part: feature:7227521-7228053:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7227521-7228053:1:exon

LOC101983821
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC101983821
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(7312619..7312971)
location: region:7312619-7312971:-1
so has part: feature:7312619-7312971:-1:exon

101983821
type: Gene
SIO_000068: ncbigene

position:7312619:-1
position: 7312619
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7312971:-1
position: 7312971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7312619-7312971:-1:exon

LOC101983821
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC101983821
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
pseudo: true
SIO_010081: LOC101983821
subclass of: SO_0000673
so part of: LOC101983821
location: complement(7312619..7312971)
location: region:7312619-7312971:-1
so has part: feature:7312619-7312971:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7312619-7312971:-1:exon

LOC106144070
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC106144070
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(7385647..7385999)
location: region:7385647-7385999:-1
so has part: feature:7385647-7385999:-1:exon

106144070
type: Gene
SIO_000068: ncbigene

position:7385647:-1
position: 7385647
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7385999:-1
position: 7385999
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7385647-7385999:-1:exon

LOC106144070
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC106144070
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins
pseudo: true
SIO_010081: LOC106144070
subclass of: SO_0000673
so part of: LOC106144070
location: complement(7385647..7385999)
location: region:7385647-7385999:-1
so has part: feature:7385647-7385999:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7385647-7385999:-1:exon

LOC113457444
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC113457444
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 7546955..7547477
location: region:7546955-7547477:1
so has part: feature:7546955-7547477:1:exon

113457444
type: Gene
SIO_000068: ncbigene

position:7546955:1
position: 7546955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7547477:1
position: 7547477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7546955-7547477:1:exon

LOC113457444
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC113457444
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
pseudo: true
SIO_010081: LOC113457444
subclass of: SO_0000673
so part of: LOC113457444
location: 7546955..7546984
location: region:7546955-7546984:1
so has part: feature:7546955-7546984:1:exon

position:7546984:1
position: 7546984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7546955-7546984:1:exon

LOC113457444
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC113457444
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
pseudo: true
SIO_010081: LOC113457444
subclass of: SO_0000673
so part of: LOC113457444
location: 7547245..7547477
location: region:7547245-7547477:1
so has part: feature:7547245-7547477:1:exon

position:7547245:1
position: 7547245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7547245-7547477:1:exon

LOC101984112
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC101984112
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 7952601..7952792
location: region:7952601-7952792:1
so has part: feature:7952601-7952792:1:exon

101984112
type: Gene
SIO_000068: ncbigene

position:7952601:1
position: 7952601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7952792:1
position: 7952792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7952601-7952792:1:exon

LOC101984112
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC101984112
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
pseudo: true
SIO_010081: LOC101984112
subclass of: SO_0000673
so part of: LOC101984112
location: 7952601..7952792
location: region:7952601-7952792:1
so has part: feature:7952601-7952792:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7952601-7952792:1:exon

LOC101984391
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC101984391
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(8045641..8049808)
location: region:8045641-8049808:-1
so has part: feature:8045641-8049808:-1:exon

101984391
type: Gene
SIO_000068: ncbigene

position:8045641:-1
position: 8045641
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8049808:-1
position: 8049808
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8045641-8049808:-1:exon

LOC101984391
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC101984391
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 70% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC101984391
subclass of: SO_0000673
so part of: LOC101984391
location: complement(8045641..8049808)
location: region:8045641-8049808:-1
so has part: feature:8045641-8049808:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8045641-8049808:-1:exon

LOC113457482
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC113457482
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(8108385..8108502)
location: region:8108385-8108502:-1
so has part: feature:8108385-8108502:-1:exon
subclass of: SO_0000578

113457482
type: Gene
SIO_000068: ncbigene

position:8108385:-1
position: 8108385
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8108502:-1
position: 8108502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8108385-8108502:-1:exon

LOC113457482
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 79684
nc RNA class: snoRNA
gene: LOC113457482
product: small nucleolar RNA SNORA28
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00400
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_003378040.1
SIO_010081: LOC113457482
subclass of: SO_0000673
so part of: LOC113457482
location: complement(8108385..8108502)
location: region:8108385-8108502:-1
so has part: feature:8108385-8108502:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8108385-8108502:-1:exon

LOC113457445
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC113457445
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 8392457..8395602
location: region:8392457-8395602:1
so has part: feature:8392457-8395602:1:exon

113457445
type: Gene
SIO_000068: ncbigene

position:8392457:1
position: 8392457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8395602:1
position: 8395602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8392457-8395602:1:exon

LOC113457445
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC113457445
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
pseudo: true
SIO_010081: LOC113457445
subclass of: SO_0000673
so part of: LOC113457445
location: 8392457..8392579
location: region:8392457-8392579:1
so has part: feature:8392457-8392579:1:exon

position:8392579:1
position: 8392579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8392457-8392579:1:exon

LOC113457445
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC113457445
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
pseudo: true
SIO_010081: LOC113457445
subclass of: SO_0000673
so part of: LOC113457445
location: 8394745..8395602
location: region:8394745-8395602:1
so has part: feature:8394745-8395602:1:exon

position:8394745:1
position: 8394745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8394745-8395602:1:exon

C1galt1c1
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: C1galt1c1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 9303245..9307262
location: region:9303245-9307262:1
so has part: feature:9303245-9307262:1:exon
subclass of: SO_0000010

101984965
type: Gene
SIO_000068: ncbigene

position:9303245:1
position: 9303245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9307262:1
position: 9307262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9303245-9307262:1:exon

C1galt1c1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: C1galt1c1
product: C1GALT1 specific chaperone 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns
transcript id: XM_005358433.2
SIO_010081: C1galt1c1
subclass of: SO_0000673
so part of: C1galt1c1
location: join(9303245..9303367,9305917..9307262)
location: region:9303245-9307262:1
so has part: feature:9303245-9303367:1:exon
so has part: feature:9305917-9307262:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9303245-9303367:1:exon

position:9303367:1
position: 9303367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:9305917-9307262:1:exon

position:9305917:1
position: 9305917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Cul4b
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: Cul4b
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 9303316..9416499
location: region:9303316-9416499:1
so has part: feature:9303316-9416499:1:exon
subclass of: SO_0000010

101985726
type: Gene
SIO_000068: ncbigene

position:9303316:1
position: 9303316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9416499:1
position: 9416499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9303316-9416499:1:exon

Cul4b
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Cul4b
product: cullin 4B
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_013350462.2
SIO_010081: Cul4b
subclass of: SO_0000673
so part of: Cul4b
location: join(9303316..9303367,9369850..9369924,9376781..9376954,9377691..9378227,9380363..9380478,9391193..9391296,9391938..9392007,9393238..9393311,9394057..9394219,9394391..9394480,9394781..9394863,9395583..9395650,9397008..9397126,9399511..9399703,9400835..9400939,9401740..9401850,9402820..9402905,9404363..9404470,9405455..9405568,9406534..9406639,9407897..9408069,9409419..9409571,9414317..9416499)
location: region:9303316-9416499:1
so has part: feature:9303316-9303367:1:exon
so has part: feature:9369850-9369924:1:exon
so has part: feature:9376781-9376954:1:exon
so has part: feature:9377691-9378227:1:exon
so has part: feature:9380363-9380478:1:exon
so has part: feature:9391193-9391296:1:exon
so has part: feature:9391938-9392007:1:exon
so has part: feature:9393238-9393311:1:exon
so has part: feature:9394057-9394219:1:exon
so has part: feature:9394391-9394480:1:exon
so has part: feature:9394781-9394863:1:exon
so has part: feature:9395583-9395650:1:exon
so has part: feature:9397008-9397126:1:exon
so has part: feature:9399511-9399703:1:exon
so has part: feature:9400835-9400939:1:exon
so has part: feature:9401740-9401850:1:exon
so has part: feature:9402820-9402905:1:exon
so has part: feature:9404363-9404470:1:exon
so has part: feature:9405455-9405568:1:exon
so has part: feature:9406534-9406639:1:exon
so has part: feature:9407897-9408069:1:exon
so has part: feature:9409419-9409571:1:exon
so has part: feature:9414317-9416499:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9303316-9303367:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:9369850-9369924:1:exon

position:9369850:1
position: 9369850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9369924:1
position: 9369924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:9376781-9376954:1:exon

position:9376781:1
position: 9376781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9376954:1
position: 9376954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:9377691-9378227:1:exon

position:9377691:1
position: 9377691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9378227:1
position: 9378227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:9380363-9380478:1:exon

position:9380363:1
position: 9380363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9380478:1
position: 9380478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:9391193-9391296:1:exon

position:9391193:1
position: 9391193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9391296:1
position: 9391296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:9391938-9392007:1:exon

position:9391938:1
position: 9391938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9392007:1
position: 9392007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:9393238-9393311:1:exon

position:9393238:1
position: 9393238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9393311:1
position: 9393311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:9394057-9394219:1:exon

position:9394057:1
position: 9394057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9394219:1
position: 9394219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:9394391-9394480:1:exon

position:9394391:1
position: 9394391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9394480:1
position: 9394480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:9394781-9394863:1:exon

position:9394781:1
position: 9394781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9394863:1
position: 9394863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:9395583-9395650:1:exon

position:9395583:1
position: 9395583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9395650:1
position: 9395650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:9397008-9397126:1:exon

position:9397008:1
position: 9397008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9397126:1
position: 9397126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:9399511-9399703:1:exon

position:9399511:1
position: 9399511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9399703:1
position: 9399703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:9400835-9400939:1:exon

position:9400835:1
position: 9400835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9400939:1
position: 9400939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:9401740-9401850:1:exon

position:9401740:1
position: 9401740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9401850:1
position: 9401850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:9402820-9402905:1:exon

position:9402820:1
position: 9402820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9402905:1
position: 9402905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:9404363-9404470:1:exon

position:9404363:1
position: 9404363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9404470:1
position: 9404470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:9405455-9405568:1:exon

position:9405455:1
position: 9405455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9405568:1
position: 9405568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:9406534-9406639:1:exon

position:9406534:1
position: 9406534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9406639:1
position: 9406639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:9407897-9408069:1:exon

position:9407897:1
position: 9407897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9408069:1
position: 9408069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:9409419-9409571:1:exon

position:9409419:1
position: 9409419
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9409571:1
position: 9409571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:9414317-9416499:1:exon

position:9414317:1
position: 9414317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

C1galt1c1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: C1galt1c1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: C1GALT1-specific chaperone 1
translation: MLSESSSFLKGVMLGSIFCALITMLGHIRIGHGNRTHHHEHHHLQAPNKDDISKISEAERMELSKSFRVYCIVLVKPKDVSLWAAVKETWTKHCDKAEFFSSENVKVFESVNVDTNDMWLMMRKAYKYAFDKYRDQYNWFFLARPSTFAVIENLKYFLLKKDPSQPFYLGHSVKSGDLDYVSVDGGIVLSIESMKRLNSLLSVPEKCPEQGGMIWKLSEDKQLAICLKYAGVFAENAEDAYGKDVFNTKSVGLFIKEAMTNHPNQVVEGCCSDMAVTFNGLSPNQMHVMMYGVYRLRAFGHVFNDALVFLPPNGSEND
SIO_010081: C1galt1c1
subclass of: SO_0000673
so part of: C1galt1c1
location: 9305922..9306878
location: region:9305922-9306878:1
so has part: feature:9305922-9306878:1:exon

XP_005358490.1
type: Protein
SIO_000068: ncbiprotein

position:9305922:1
position: 9305922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9306878:1
position: 9306878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9305922-9306878:1:exon

Mcts1
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: Mcts1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(9323843..9336552)
location: region:9323843-9336552:-1
so has part: feature:9323843-9336552:-1:exon
subclass of: SO_0000010

101985258
type: Gene
SIO_000068: ncbigene

position:9323843:-1
position: 9323843
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9336552:-1
position: 9336552
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9323843-9336552:-1:exon

Mcts1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Mcts1
product: MCTS1, re-initiation and release factor, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
transcript id: XM_005358435.3
SIO_010081: Mcts1
subclass of: SO_0000673
so part of: Mcts1
location: complement(join(9323843..9324049,9325380..9325447,9330665..9330798,9334277..9334374,9334971..9335123,9336288..9336552))
location: region:9323843-9336552:-1
so has part: feature:9336288-9336552:-1:exon
so has part: feature:9334971-9335123:-1:exon
so has part: feature:9334277-9334374:-1:exon
so has part: feature:9330665-9330798:-1:exon
so has part: feature:9325380-9325447:-1:exon
so has part: feature:9323843-9324049:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9336288-9336552:-1:exon

position:9336288:-1
position: 9336288
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:9334971-9335123:-1:exon

position:9334971:-1
position: 9334971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9335123:-1
position: 9335123
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:9334277-9334374:-1:exon

position:9334277:-1
position: 9334277
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9334374:-1
position: 9334374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:9330665-9330798:-1:exon

position:9330665:-1
position: 9330665
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9330798:-1
position: 9330798
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:9325380-9325447:-1:exon

position:9325380:-1
position: 9325380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9325447:-1
position: 9325447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:9323843-9324049:-1:exon

position:9324049:-1
position: 9324049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Mcts1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Mcts1
product: MCTS1, re-initiation and release factor, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
transcript id: XM_005358434.2
SIO_010081: Mcts1
subclass of: SO_0000673
so part of: Mcts1
location: complement(join(9323843..9324049,9325380..9325447,9330665..9330798,9334277..9334374,9334971..9335123,9335654..9335853))
location: region:9323843-9335853:-1
so has part: feature:9335654-9335853:-1:exon
so has part: feature:9334971-9335123:-1:exon
so has part: feature:9334277-9334374:-1:exon
so has part: feature:9330665-9330798:-1:exon
so has part: feature:9325380-9325447:-1:exon
so has part: feature:9323843-9324049:-1:exon

position:9335853:-1
position: 9335853
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9335654-9335853:-1:exon

position:9335654:-1
position: 9335654
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:9334971-9335123:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:9334277-9334374:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:9330665-9330798:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:9325380-9325447:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:9323843-9324049:-1:exon

Mcts1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Mcts1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: malignant T-cell-amplified sequence 1 isoform X2
translation: MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTYK
SIO_010081: Mcts1
subclass of: SO_0000673
so part of: Mcts1
location: complement(join(9323968..9324049,9325380..9325447,9330665..9330798,9334277..9334374,9334971..9335123,9336288..9336298))
location: region:9323968-9336298:-1
so has part: feature:9336288-9336298:-1:exon
so has part: feature:9334971-9335123:-1:exon
so has part: feature:9334277-9334374:-1:exon
so has part: feature:9330665-9330798:-1:exon
so has part: feature:9325380-9325447:-1:exon
so has part: feature:9323968-9324049:-1:exon

XP_005358492.1
type: Protein
SIO_000068: ncbiprotein

position:9323968:-1
position: 9323968
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9336298:-1
position: 9336298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9336288-9336298:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:9334971-9335123:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:9334277-9334374:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:9330665-9330798:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:9325380-9325447:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:9323968-9324049:-1:exon

Mcts1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Mcts1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: malignant T-cell-amplified sequence 1 isoform X1
translation: MGKGRFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTYK
SIO_010081: Mcts1
subclass of: SO_0000673
so part of: Mcts1
location: complement(join(9323968..9324049,9325380..9325447,9330665..9330798,9334277..9334374,9334971..9335123,9335654..9335667))
location: region:9323968-9335667:-1
so has part: feature:9335654-9335667:-1:exon
so has part: feature:9334971-9335123:-1:exon
so has part: feature:9334277-9334374:-1:exon
so has part: feature:9330665-9330798:-1:exon
so has part: feature:9325380-9325447:-1:exon
so has part: feature:9323968-9324049:-1:exon

XP_005358491.1
type: Protein
SIO_000068: ncbiprotein

position:9335667:-1
position: 9335667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9335654-9335667:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:9334971-9335123:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:9334277-9334374:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:9330665-9330798:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:9325380-9325447:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:9323968-9324049:-1:exon

Cul4b
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Cul4b
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cullin-4B
translation: MSRPTRSRERRENDSNSEDNSSETSNQEGRRCLQDPPRPPYPPLLPPVLPPPPPPPQVQRTPRLLDQGAMKSVCPGTSGFSSPNPSAASAAAQEVRSATDGNTSTTPPTSAKKRKLNSSSSSSSNSSNEREDFDSTTSSTPPQPKDSASPSTSSCCLGVPVATSSHVQIQKKLRFEDTLEFVGFETKMAEEASSSSSSSPTAATSQQQQQLKNKSLLISSVASVHHANGLSKSSTTVSSFANSKPGSAKKLVIKNFKDKPKLPENYTDETWQKLKEAVEAIQNSTSIKYNLEELYQAVENLCSYKISANLYMQLRQICEDHIKAQIHQFREDSLDSVLFLKKIDKCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQTKTIDGILLLIERERNGEAIDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKSLIASVEKQLLGEHLTAILQKGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIVINPEKDKTMVQELLDFKDKVDHIIDTCFLKNEKFINAMKEAFETFINKRPNKPAELIAKYVDSKLRAGNKEATDEELEKMLDKIMIIFRFIYGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMIQFKQYMQNQNVPGNIELTVNILTMGYWPTYVPMEVHLPPEMVKLQEIFKTFYLGKHSGRKLQWQSTLGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFSLEEIKQATGIEDGELRRTLQSLACGKARVLAKNPKGKDIEDGDKFICNDDFKHKLFRIKINQIQMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKPADLKKRIESLIDRDYMERDKENPNQYNYIA
SIO_010081: Cul4b
subclass of: SO_0000673
so part of: Cul4b
location: join(9369864..9369924,9376781..9376954,9377691..9378227,9380363..9380478,9391193..9391296,9391938..9392007,9393238..9393311,9394057..9394219,9394391..9394480,9394781..9394863,9395583..9395650,9397008..9397126,9399511..9399703,9400835..9400939,9401740..9401850,9402820..9402905,9404363..9404470,9405455..9405568,9406534..9406639,9407897..9408069,9409419..9409571,9414317..9414412)
location: region:9369864-9414412:1
so has part: feature:9369864-9369924:1:exon
so has part: feature:9376781-9376954:1:exon
so has part: feature:9377691-9378227:1:exon
so has part: feature:9380363-9380478:1:exon
so has part: feature:9391193-9391296:1:exon
so has part: feature:9391938-9392007:1:exon
so has part: feature:9393238-9393311:1:exon
so has part: feature:9394057-9394219:1:exon
so has part: feature:9394391-9394480:1:exon
so has part: feature:9394781-9394863:1:exon
so has part: feature:9395583-9395650:1:exon
so has part: feature:9397008-9397126:1:exon
so has part: feature:9399511-9399703:1:exon
so has part: feature:9400835-9400939:1:exon
so has part: feature:9401740-9401850:1:exon
so has part: feature:9402820-9402905:1:exon
so has part: feature:9404363-9404470:1:exon
so has part: feature:9405455-9405568:1:exon
so has part: feature:9406534-9406639:1:exon
so has part: feature:9407897-9408069:1:exon
so has part: feature:9409419-9409571:1:exon
so has part: feature:9414317-9414412:1:exon

XP_013205916.2
type: Protein
SIO_000068: ncbiprotein

position:9369864:1
position: 9369864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9414412:1
position: 9414412
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9369864-9369924:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:9376781-9376954:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:9377691-9378227:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:9380363-9380478:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:9391193-9391296:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:9391938-9392007:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:9393238-9393311:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:9394057-9394219:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:9394391-9394480:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:9394781-9394863:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:9395583-9395650:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:9397008-9397126:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:9399511-9399703:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:9400835-9400939:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:9401740-9401850:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:9402820-9402905:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:9404363-9404470:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:9405455-9405568:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:9406534-9406639:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:9407897-9408069:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:9409419-9409571:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:9414317-9414412:1:exon

Lamp2
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: Lamp2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 9479445..9535418
location: region:9479445-9535418:1
so has part: feature:9479445-9535418:1:exon
subclass of: SO_0000010

101986294
type: Gene
SIO_000068: ncbigene

position:9479445:1
position: 9479445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9535418:1
position: 9535418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9479445-9535418:1:exon

Lamp2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Lamp2
product: lysosomal associated membrane protein 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
transcript id: XM_005358437.3
SIO_010081: Lamp2
subclass of: SO_0000673
so part of: Lamp2
location: join(9479445..9479633,9494746..9494861,9496944..9497157,9505975..9506133,9509328..9509521,9510724..9510846,9516426..9516489,9517348..9517512,9533056..9535418)
location: region:9479445-9535418:1
so has part: feature:9479445-9479633:1:exon
so has part: feature:9494746-9494861:1:exon
so has part: feature:9496944-9497157:1:exon
so has part: feature:9505975-9506133:1:exon
so has part: feature:9509328-9509521:1:exon
so has part: feature:9510724-9510846:1:exon
so has part: feature:9516426-9516489:1:exon
so has part: feature:9517348-9517512:1:exon
so has part: feature:9533056-9535418:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9479445-9479633:1:exon

position:9479633:1
position: 9479633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:9494746-9494861:1:exon

position:9494746:1
position: 9494746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9494861:1
position: 9494861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:9496944-9497157:1:exon

position:9496944:1
position: 9496944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9497157:1
position: 9497157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:9505975-9506133:1:exon

position:9505975:1
position: 9505975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9506133:1
position: 9506133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:9509328-9509521:1:exon

position:9509328:1
position: 9509328
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9509521:1
position: 9509521
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:9510724-9510846:1:exon

position:9510724:1
position: 9510724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9510846:1
position: 9510846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:9516426-9516489:1:exon

position:9516426:1
position: 9516426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9516489:1
position: 9516489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:9517348-9517512:1:exon

position:9517348:1
position: 9517348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9517512:1
position: 9517512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:9533056-9535418:1:exon

position:9533056:1
position: 9533056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Lamp2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Lamp2
product: lysosomal associated membrane protein 2, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
transcript id: XM_005358438.3
SIO_010081: Lamp2
subclass of: SO_0000673
so part of: Lamp2
location: join(9479445..9479633,9494746..9494861,9496944..9497157,9505975..9506133,9509328..9509521,9510724..9510846,9516426..9516489,9517348..9517512,9529725..9530267)
location: region:9479445-9530267:1
so has part: feature:9479445-9479633:1:exon
so has part: feature:9494746-9494861:1:exon
so has part: feature:9496944-9497157:1:exon
so has part: feature:9505975-9506133:1:exon
so has part: feature:9509328-9509521:1:exon
so has part: feature:9510724-9510846:1:exon
so has part: feature:9516426-9516489:1:exon
so has part: feature:9517348-9517512:1:exon
so has part: feature:9529725-9530267:1:exon

position:9530267:1
position: 9530267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9479445-9479633:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:9494746-9494861:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:9496944-9497157:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:9505975-9506133:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:9509328-9509521:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:9510724-9510846:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:9516426-9516489:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:9517348-9517512:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:9529725-9530267:1:exon

position:9529725:1
position: 9529725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Lamp2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Lamp2
product: lysosomal associated membrane protein 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns
transcript id: XM_005358439.3
SIO_010081: Lamp2
subclass of: SO_0000673
so part of: Lamp2
location: join(9479445..9479633,9494746..9494861,9496944..9497157,9505975..9506133,9509328..9509521,9510724..9510846,9516426..9516489,9517348..9517512,9519988..9522349)
location: region:9479445-9522349:1
so has part: feature:9479445-9479633:1:exon
so has part: feature:9494746-9494861:1:exon
so has part: feature:9496944-9497157:1:exon
so has part: feature:9505975-9506133:1:exon
so has part: feature:9509328-9509521:1:exon
so has part: feature:9510724-9510846:1:exon
so has part: feature:9516426-9516489:1:exon
so has part: feature:9517348-9517512:1:exon
so has part: feature:9519988-9522349:1:exon

position:9522349:1
position: 9522349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9479445-9479633:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:9494746-9494861:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:9496944-9497157:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:9505975-9506133:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:9509328-9509521:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:9510724-9510846:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:9516426-9516489:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:9517348-9517512:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:9519988-9522349:1:exon

position:9519988:1
position: 9519988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Lamp2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Lamp2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: lysosome-associated membrane glycoprotein 2 isoform X1
translation: MMPFRLSPVSGSGLILFCLLLGAVQSSALELNLTNSNGTCLFAKWEMNFTIFYETTDKTFKNVTSSELPSVTYNGSSCGDDQNSAKIVLQFGSAVSWNVNFTKEASDYFIDSILLSYNTSDNTTFPGAVDKGSVAVESSQRFKIPLNDIFRCNSLLILNVSSVVQHYWDIHVQAFVQNGTVSKNEYVCEEDRFVTTVVPIIHTTVPSPTATPTPTPTPIPKVGNYSVTNGNTTCLLATMGLQLNITEEKVPFIFNINPTTTNFTGSCHPQTAQLRLNNSQIKYLDFIFAVKSENRFYLKEVNVSMLLANGSVFSVANNNLSFWDAPLGSSYMCNKEQVISVSTTFQINTFNLKVQPFNVTKGKYSTAEECAADSDLSFLIPVAVGVALGFLIIAVFVSYMIGRRKSRTGYQSV
SIO_010081: Lamp2
subclass of: SO_0000673
so part of: Lamp2
location: join(9479570..9479633,9494746..9494861,9496944..9497157,9505975..9506133,9509328..9509521,9510724..9510846,9516426..9516489,9517348..9517512,9533056..9533198)
location: region:9479570-9533198:1
so has part: feature:9479570-9479633:1:exon
so has part: feature:9494746-9494861:1:exon
so has part: feature:9496944-9497157:1:exon
so has part: feature:9505975-9506133:1:exon
so has part: feature:9509328-9509521:1:exon
so has part: feature:9510724-9510846:1:exon
so has part: feature:9516426-9516489:1:exon
so has part: feature:9517348-9517512:1:exon
so has part: feature:9533056-9533198:1:exon

XP_005358494.2
type: Protein
SIO_000068: ncbiprotein

position:9479570:1
position: 9479570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9533198:1
position: 9533198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9479570-9479633:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:9494746-9494861:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:9496944-9497157:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:9505975-9506133:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:9509328-9509521:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:9510724-9510846:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:9516426-9516489:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:9517348-9517512:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:9533056-9533198:1:exon

Lamp2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Lamp2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: lysosome-associated membrane glycoprotein 2 isoform X3
translation: MMPFRLSPVSGSGLILFCLLLGAVQSSALELNLTNSNGTCLFAKWEMNFTIFYETTDKTFKNVTSSELPSVTYNGSSCGDDQNSAKIVLQFGSAVSWNVNFTKEASDYFIDSILLSYNTSDNTTFPGAVDKGSVAVESSQRFKIPLNDIFRCNSLLILNVSSVVQHYWDIHVQAFVQNGTVSKNEYVCEEDRFVTTVVPIIHTTVPSPTATPTPTPTPIPKVGNYSVTNGNTTCLLATMGLQLNITEEKVPFIFNINPTTTNFTGSCHPQTAQLRLNNSQIKYLDFIFAVKSENRFYLKEVNVSMLLANGSVFSVANNNLSFWDAPLGSSYMCNKEQVISVSTTFQINTFNLKVQPFNVTKGKYSTAQDCSADEDNFLVPIVVGAALAGVLILVLLAYFIGLKRHHTGYEQF
SIO_010081: Lamp2
subclass of: SO_0000673
so part of: Lamp2
location: join(9479570..9479633,9494746..9494861,9496944..9497157,9505975..9506133,9509328..9509521,9510724..9510846,9516426..9516489,9517348..9517512,9529725..9529864)
location: region:9479570-9529864:1
so has part: feature:9479570-9479633:1:exon
so has part: feature:9494746-9494861:1:exon
so has part: feature:9496944-9497157:1:exon
so has part: feature:9505975-9506133:1:exon
so has part: feature:9509328-9509521:1:exon
so has part: feature:9510724-9510846:1:exon
so has part: feature:9516426-9516489:1:exon
so has part: feature:9517348-9517512:1:exon
so has part: feature:9529725-9529864:1:exon

XP_005358495.2
type: Protein
SIO_000068: ncbiprotein

position:9529864:1
position: 9529864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9479570-9479633:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:9494746-9494861:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:9496944-9497157:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:9505975-9506133:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:9509328-9509521:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:9510724-9510846:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:9516426-9516489:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:9517348-9517512:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:9529725-9529864:1:exon

Lamp2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Lamp2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: lysosome-associated membrane glycoprotein 2 isoform X2
translation: MMPFRLSPVSGSGLILFCLLLGAVQSSALELNLTNSNGTCLFAKWEMNFTIFYETTDKTFKNVTSSELPSVTYNGSSCGDDQNSAKIVLQFGSAVSWNVNFTKEASDYFIDSILLSYNTSDNTTFPGAVDKGSVAVESSQRFKIPLNDIFRCNSLLILNVSSVVQHYWDIHVQAFVQNGTVSKNEYVCEEDRFVTTVVPIIHTTVPSPTATPTPTPTPIPKVGNYSVTNGNTTCLLATMGLQLNITEEKVPFIFNINPTTTNFTGSCHPQTAQLRLNNSQIKYLDFIFAVKSENRFYLKEVNVSMLLANGSVFSVANNNLSFWDAPLGSSYMCNKEQVISVSTTFQINTFNLKVQPFNVTKGKYSTAQECSLDDDTILIPIIVGAGLSGLIIVIVIAYLIGRRKSYAGYQTL
SIO_010081: Lamp2
subclass of: SO_0000673
so part of: Lamp2
location: join(9479570..9479633,9494746..9494861,9496944..9497157,9505975..9506133,9509328..9509521,9510724..9510846,9516426..9516489,9517348..9517512,9519988..9520127)
location: region:9479570-9520127:1
so has part: feature:9479570-9479633:1:exon
so has part: feature:9494746-9494861:1:exon
so has part: feature:9496944-9497157:1:exon
so has part: feature:9505975-9506133:1:exon
so has part: feature:9509328-9509521:1:exon
so has part: feature:9510724-9510846:1:exon
so has part: feature:9516426-9516489:1:exon
so has part: feature:9517348-9517512:1:exon
so has part: feature:9519988-9520127:1:exon

XP_005358496.2
type: Protein
SIO_000068: ncbiprotein

position:9520127:1
position: 9520127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9479570-9479633:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:9494746-9494861:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:9496944-9497157:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:9505975-9506133:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:9509328-9509521:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:9510724-9510846:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:9516426-9516489:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:9517348-9517512:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:9519988-9520127:1:exon

LOC101986006
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC101986006
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(9498902..9499097)
location: region:9498902-9499097:-1
so has part: feature:9498902-9499097:-1:exon

101986006
type: Gene
SIO_000068: ncbigene

position:9498902:-1
position: 9498902
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9499097:-1
position: 9499097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9498902-9499097:-1:exon

LOC101986006
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC101986006
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
pseudo: true
SIO_010081: LOC101986006
subclass of: SO_0000673
so part of: LOC101986006
location: complement(9498902..9499097)
location: region:9498902-9499097:-1
so has part: feature:9498902-9499097:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9498902-9499097:-1:exon

LOC113457439
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC113457439
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(9561154..9563480)
location: region:9561154-9563480:-1
so has part: feature:9561154-9563480:-1:exon
subclass of: SO_0000010

113457439
type: Gene
SIO_000068: ncbigene

position:9561154:-1
position: 9561154
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9563480:-1
position: 9563480
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9561154-9563480:-1:exon

LOC113457439
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: LOC113457439
product: testis-expressed protein 13C-1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transcript id: XM_026784782.1
SIO_010081: LOC113457439
subclass of: SO_0000673
so part of: LOC113457439
location: complement(join(9561154..9561203,9562862..9563480))
location: region:9561154-9563480:-1
so has part: feature:9562862-9563480:-1:exon
so has part: feature:9561154-9561203:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9562862-9563480:-1:exon

position:9562862:-1
position: 9562862
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:9561154-9561203:-1:exon

position:9561203:-1
position: 9561203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC113457439
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: LOC113457439
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: testis-expressed protein 13C-1-like
translation: MAVDFRDPKSGFRHCEVVLFINEEVLRNGGGSGFYLTFRSRPWKDIEDGLKSVVADKQVPHTIKRACAWSALALGVRVASRQREKQSRRVQQLHNQVEEHEAATWTLATDLQRLRDERDEVVSELHNARDSLKQVLHERDMLHKKLIEFELSQQLLAESQDAEYPGTMPWTLMVKRQRKDLATGLQSGQYAASPKKDHMASKSSKTVLETLHEGEEFPASSV
SIO_010081: LOC113457439
subclass of: SO_0000673
so part of: LOC113457439
location: complement(join(9561154..9561203,9562862..9563480))
location: region:9561154-9563480:-1
so has part: feature:9562862-9563480:-1:exon
so has part: feature:9561154-9561203:-1:exon

XP_026640583.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9562862-9563480:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:9561154-9561203:-1:exon

Atp1b4
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: Atp1b4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(9607815..9624117)
location: region:9607815-9624117:-1
so has part: feature:9607815-9624117:-1:exon
subclass of: SO_0000010

101986964
type: Gene
SIO_000068: ncbigene

position:9607815:-1
position: 9607815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9624117:-1
position: 9624117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9607815-9624117:-1:exon

Atp1b4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Atp1b4
product: ATPase Na+/K+ transporting family member beta 4, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
transcript id: XM_005358441.1
SIO_010081: Atp1b4
subclass of: SO_0000673
so part of: Atp1b4
location: complement(join(9607815..9607976,9608665..9608760,9610997..9611053,9612201..9612397,9615678..9615782,9616055..9616183,9619796..9620045,9624055..9624117))
location: region:9607815-9624117:-1
so has part: feature:9624055-9624117:-1:exon
so has part: feature:9619796-9620045:-1:exon
so has part: feature:9616055-9616183:-1:exon
so has part: feature:9615678-9615782:-1:exon
so has part: feature:9612201-9612397:-1:exon
so has part: feature:9610997-9611053:-1:exon
so has part: feature:9608665-9608760:-1:exon
so has part: feature:9607815-9607976:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9624055-9624117:-1:exon

position:9624055:-1
position: 9624055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:9619796-9620045:-1:exon

position:9619796:-1
position: 9619796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9620045:-1
position: 9620045
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:9616055-9616183:-1:exon

position:9616055:-1
position: 9616055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9616183:-1
position: 9616183
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:9615678-9615782:-1:exon

position:9615678:-1
position: 9615678
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9615782:-1
position: 9615782
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:9612201-9612397:-1:exon

position:9612201:-1
position: 9612201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9612397:-1
position: 9612397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:9610997-9611053:-1:exon

position:9610997:-1
position: 9610997
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9611053:-1
position: 9611053
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:9608665-9608760:-1:exon

position:9608665:-1
position: 9608665
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9608760:-1
position: 9608760
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:9607815-9607976:-1:exon

position:9607976:-1
position: 9607976
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Atp1b4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Atp1b4
product: ATPase Na+/K+ transporting family member beta 4, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
transcript id: XM_005358440.2
SIO_010081: Atp1b4
subclass of: SO_0000673
so part of: Atp1b4
location: complement(join(9607815..9607976,9608665..9608760,9610997..9611053,9612201..9612397,9615678..9615782,9616055..9616183,9619784..9620045,9624055..9624117))
location: region:9607815-9624117:-1
so has part: feature:9624055-9624117:-1:exon
so has part: feature:9619784-9620045:-1:exon
so has part: feature:9616055-9616183:-1:exon
so has part: feature:9615678-9615782:-1:exon
so has part: feature:9612201-9612397:-1:exon
so has part: feature:9610997-9611053:-1:exon
so has part: feature:9608665-9608760:-1:exon
so has part: feature:9607815-9607976:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9624055-9624117:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:9619784-9620045:-1:exon

position:9619784:-1
position: 9619784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:9616055-9616183:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:9615678-9615782:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:9612201-9612397:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:9610997-9611053:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:9608665-9608760:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:9607815-9607976:-1:exon

Atp1b4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Atp1b4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein ATP1B4 isoform X2
translation: MRRQLRSRRAPAFPYGYRYRLDDQDEVNQNYLADEEEEAEEEAQVMMAPGLEEEEEEEEEEKEEEEEREEEGQGQLTGNAWRRKLQTVTEYLWDPEKRMSLARTGLILVIYFFFYASLAAVITLFLYMLFLAVSPYMPTFTEQVKPPGVMIRPFAHSLNFNFNVSQPETWQHYVVSLNGFLQGYNDSLQEEMNVDCPPGQFFIQDGDEDEDKKACQFKRSFLKNCSGLEDPTFGYSTGQPCILLKMNRIVGFRPELGDPVKVTCKVQKGDENDIRSINYYPESASFDLRYYPYYGKLTHVNYTSPLVAMHFTDVVKNQVVPVQCQLKGKGIINDVINDRFVGRIIFTLNIET
SIO_010081: Atp1b4
subclass of: SO_0000673
so part of: Atp1b4
location: complement(join(9607815..9607976,9608665..9608760,9610997..9611053,9612201..9612397,9615678..9615782,9616055..9616183,9619796..9620045,9624055..9624117))
location: region:9607815-9624117:-1
so has part: feature:9624055-9624117:-1:exon
so has part: feature:9619796-9620045:-1:exon
so has part: feature:9616055-9616183:-1:exon
so has part: feature:9615678-9615782:-1:exon
so has part: feature:9612201-9612397:-1:exon
so has part: feature:9610997-9611053:-1:exon
so has part: feature:9608665-9608760:-1:exon
so has part: feature:9607815-9607976:-1:exon

XP_005358498.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9624055-9624117:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:9619796-9620045:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:9616055-9616183:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:9615678-9615782:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:9612201-9612397:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:9610997-9611053:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:9608665-9608760:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:9607815-9607976:-1:exon

Atp1b4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Atp1b4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein ATP1B4 isoform X1
translation: MRRQLRSRRAPAFPYGYRYRLDDQDEVNQNYLADEEEEAEEEAQVMMAPGLEEEEEEEEEEKEEEEEREEEGQGQLTGNAWRRKLQTVTEYLWDPEKRMSLARTGQSRSLILVIYFFFYASLAAVITLFLYMLFLAVSPYMPTFTEQVKPPGVMIRPFAHSLNFNFNVSQPETWQHYVVSLNGFLQGYNDSLQEEMNVDCPPGQFFIQDGDEDEDKKACQFKRSFLKNCSGLEDPTFGYSTGQPCILLKMNRIVGFRPELGDPVKVTCKVQKGDENDIRSINYYPESASFDLRYYPYYGKLTHVNYTSPLVAMHFTDVVKNQVVPVQCQLKGKGIINDVINDRFVGRIIFTLNIET
SIO_010081: Atp1b4
subclass of: SO_0000673
so part of: Atp1b4
location: complement(join(9607815..9607976,9608665..9608760,9610997..9611053,9612201..9612397,9615678..9615782,9616055..9616183,9619784..9620045,9624055..9624117))
location: region:9607815-9624117:-1
so has part: feature:9624055-9624117:-1:exon
so has part: feature:9619784-9620045:-1:exon
so has part: feature:9616055-9616183:-1:exon
so has part: feature:9615678-9615782:-1:exon
so has part: feature:9612201-9612397:-1:exon
so has part: feature:9610997-9611053:-1:exon
so has part: feature:9608665-9608760:-1:exon
so has part: feature:9607815-9607976:-1:exon

XP_005358497.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9624055-9624117:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:9619784-9620045:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:9616055-9616183:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:9615678-9615782:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:9612201-9612397:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:9610997-9611053:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:9608665-9608760:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:9607815-9607976:-1:exon

LOC101993253
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC101993253
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 9635745..9640930
location: region:9635745-9640930:1
so has part: feature:9635745-9640930:1:exon

101993253
type: Gene
SIO_000068: ncbigene

position:9635745:1
position: 9635745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9640930:1
position: 9640930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9635745-9640930:1:exon

LOC101993253
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC101993253
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC101993253
subclass of: SO_0000673
so part of: LOC101993253
location: 9635745..9635756
location: region:9635745-9635756:1
so has part: feature:9635745-9635756:1:exon

position:9635756:1
position: 9635756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9635745-9635756:1:exon

LOC101993253
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC101993253
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC101993253
subclass of: SO_0000673
so part of: LOC101993253
location: 9639432..9640930
location: region:9639432-9640930:1
so has part: feature:9639432-9640930:1:exon

position:9639432:1
position: 9639432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9639432-9640930:1:exon

Tmem255a
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: Tmem255a
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 9671651..9726420
location: region:9671651-9726420:1
so has part: feature:9671651-9726420:1:exon
subclass of: SO_0000010

101987894
type: Gene
SIO_000068: ncbigene

position:9671651:1
position: 9671651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9726420:1
position: 9726420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9671651-9726420:1:exon

Tmem255a
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Tmem255a
product: transmembrane protein 255A, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
transcript id: XM_005358444.3
SIO_010081: Tmem255a
subclass of: SO_0000673
so part of: Tmem255a
location: join(9671651..9671870,9678565..9678707,9689575..9689637,9692085..9692174,9699574..9699642,9701405..9701476,9701883..9701971,9710051..9710213,9717505..9717648,9724331..9726420)
location: region:9671651-9726420:1
so has part: feature:9671651-9671870:1:exon
so has part: feature:9678565-9678707:1:exon
so has part: feature:9689575-9689637:1:exon
so has part: feature:9692085-9692174:1:exon
so has part: feature:9699574-9699642:1:exon
so has part: feature:9701405-9701476:1:exon
so has part: feature:9701883-9701971:1:exon
so has part: feature:9710051-9710213:1:exon
so has part: feature:9717505-9717648:1:exon
so has part: feature:9724331-9726420:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9671651-9671870:1:exon

position:9671870:1
position: 9671870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:9678565-9678707:1:exon

position:9678565:1
position: 9678565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9678707:1
position: 9678707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:9689575-9689637:1:exon

position:9689575:1
position: 9689575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9689637:1
position: 9689637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:9692085-9692174:1:exon

position:9692085:1
position: 9692085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9692174:1
position: 9692174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:9699574-9699642:1:exon

position:9699574:1
position: 9699574
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9699642:1
position: 9699642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:9701405-9701476:1:exon

position:9701405:1
position: 9701405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9701476:1
position: 9701476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:9701883-9701971:1:exon

position:9701883:1
position: 9701883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9701971:1
position: 9701971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:9710051-9710213:1:exon

position:9710051:1
position: 9710051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9710213:1
position: 9710213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:9717505-9717648:1:exon

position:9717505:1
position: 9717505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9717648:1
position: 9717648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:9724331-9726420:1:exon

position:9724331:1
position: 9724331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Tmem255a
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Tmem255a
product: transmembrane protein 255A, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
transcript id: XM_005358445.3
SIO_010081: Tmem255a
subclass of: SO_0000673
so part of: Tmem255a
location: join(9671651..9671870,9678565..9678707,9689575..9689637,9692085..9692174,9701405..9701476,9701883..9701971,9710051..9710213,9717505..9717648,9724331..9726420)
location: region:9671651-9726420:1
so has part: feature:9671651-9671870:1:exon
so has part: feature:9678565-9678707:1:exon
so has part: feature:9689575-9689637:1:exon
so has part: feature:9692085-9692174:1:exon
so has part: feature:9701405-9701476:1:exon
so has part: feature:9701883-9701971:1:exon
so has part: feature:9710051-9710213:1:exon
so has part: feature:9717505-9717648:1:exon
so has part: feature:9724331-9726420:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9671651-9671870:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:9678565-9678707:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:9689575-9689637:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:9692085-9692174:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:9701405-9701476:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:9701883-9701971:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:9710051-9710213:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:9717505-9717648:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:9724331-9726420:1:exon

Tmem255a
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Tmem255a
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transmembrane protein 255A isoform X1
translation: MHQSLTQQRSSDMSLPDSMGAFNRRKRNSIYVTVTLLIVSMLILTVGLAATTRTQNVTVGGYYPGVILGFGSFLGIIGSNLIENKRQMLVASIVFISFGVIAAFCCAIVDGVFAAKHIDLKPLYANRCHYVPKTSQREAEEVITSSSKLSPSTRALRNLTQAVKEVNCPQLSRGLCTPRIRGNTCFCCDLYNCGNRVEITGGYYEYIDVSSCQDIIHLYHLLWSATILNIVGLFLGIITAAVLGGFKDMNPTVPALNCSVENAHPTVSYYARPQVTSYNTYYHSPPHLPPYSAYDFQHSSVFPSPPSDEQEPQSASPSPSYMWSSSAPPRYSPPYYPPFEKPPPYSP
SIO_010081: Tmem255a
subclass of: SO_0000673
so part of: Tmem255a
location: join(9671813..9671870,9678565..9678707,9689575..9689637,9692085..9692174,9699574..9699642,9701405..9701476,9701883..9701971,9710051..9710213,9717505..9717648,9724331..9724483)
location: region:9671813-9724483:1
so has part: feature:9671813-9671870:1:exon
so has part: feature:9678565-9678707:1:exon
so has part: feature:9689575-9689637:1:exon
so has part: feature:9692085-9692174:1:exon
so has part: feature:9699574-9699642:1:exon
so has part: feature:9701405-9701476:1:exon
so has part: feature:9701883-9701971:1:exon
so has part: feature:9710051-9710213:1:exon
so has part: feature:9717505-9717648:1:exon
so has part: feature:9724331-9724483:1:exon

XP_005358501.1
type: Protein
SIO_000068: ncbiprotein

position:9671813:1
position: 9671813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9724483:1
position: 9724483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9671813-9671870:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:9678565-9678707:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:9689575-9689637:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:9692085-9692174:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:9699574-9699642:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:9701405-9701476:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:9701883-9701971:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:9710051-9710213:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:9717505-9717648:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:9724331-9724483:1:exon

Tmem255a
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Tmem255a
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transmembrane protein 255A isoform X2
translation: MHQSLTQQRSSDMSLPDSMGAFNRRKRNSIYVTVTLLIVSMLILTVGLAATTRTQNVTVGGYYPGVILGFGSFLGIIGSNLIENKRQMLVASIVFISFGVIAAFCCAIVDGVFAAKHIVITSSSKLSPSTRALRNLTQAVKEVNCPQLSRGLCTPRIRGNTCFCCDLYNCGNRVEITGGYYEYIDVSSCQDIIHLYHLLWSATILNIVGLFLGIITAAVLGGFKDMNPTVPALNCSVENAHPTVSYYARPQVTSYNTYYHSPPHLPPYSAYDFQHSSVFPSPPSDEQEPQSASPSPSYMWSSSAPPRYSPPYYPPFEKPPPYSP
SIO_010081: Tmem255a
subclass of: SO_0000673
so part of: Tmem255a
location: join(9671813..9671870,9678565..9678707,9689575..9689637,9692085..9692174,9701405..9701476,9701883..9701971,9710051..9710213,9717505..9717648,9724331..9724483)
location: region:9671813-9724483:1
so has part: feature:9671813-9671870:1:exon
so has part: feature:9678565-9678707:1:exon
so has part: feature:9689575-9689637:1:exon
so has part: feature:9692085-9692174:1:exon
so has part: feature:9701405-9701476:1:exon
so has part: feature:9701883-9701971:1:exon
so has part: feature:9710051-9710213:1:exon
so has part: feature:9717505-9717648:1:exon
so has part: feature:9724331-9724483:1:exon

XP_005358502.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9671813-9671870:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:9678565-9678707:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:9689575-9689637:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:9692085-9692174:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:9701405-9701476:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:9701883-9701971:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:9710051-9710213:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:9717505-9717648:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:9724331-9724483:1:exon

Zbtb33
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: Zbtb33
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(9726681..9734244)
location: region:9726681-9734244:-1
so has part: feature:9726681-9734244:-1:exon
subclass of: SO_0000010

101987618
type: Gene
SIO_000068: ncbigene

position:9726681:-1
position: 9726681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9734244:-1
position: 9734244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9726681-9734244:-1:exon

Zbtb33
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Zbtb33
product: zinc finger and BTB domain containing 33
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
transcript id: XM_005358443.3
SIO_010081: Zbtb33
subclass of: SO_0000673
so part of: Zbtb33
location: complement(join(9726681..9731782,9734124..9734244))
location: region:9726681-9734244:-1
so has part: feature:9734124-9734244:-1:exon
so has part: feature:9726681-9731782:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9734124-9734244:-1:exon

position:9734124:-1
position: 9734124
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:9726681-9731782:-1:exon

position:9731782:-1
position: 9731782
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Zbtb33
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Zbtb33
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transcriptional regulator Kaiso
translation: MESRKLISATDIQYSGSLLSSLNEQRDHGLFCDVTVIVEDRKFRAHRNILSASSTYFHQLFSVAGQVVELSFIRAEIFAEILNYIYSSKIVRVRADLLDELIKSGQLLGVKFIAELGVPLSQVKNISAQDGTDEALPPDSSDKNLDIQKSKDEAPDNGATVMPIITESFSLSAEDYEMKKIIVTDSDDDDDDVIFCSEILPEKENLPSNNTMAQVQPNPAPVAISEVTPCASNTSPPLTNITPTPKLPTPVNQAALSQTQGNEELLVSSASTHLTPNIILLNQAPLTTPPSVSSALPNHMSSSINLLVQNQPTPINLLVQNQPTPNNAVLTGNKTNGVEAEEIIDDDDVTISSSPDSAVSNTSLVPQADTSKSTTFDGSLTQKVQTPVVLQEPPSNSLKVSDVITRNTNDPGLGSKHLTEGQKIITLDTTTEIEGLSTGCKVYANIGEDTYDVVIPVKDDPDGGEAKLENELPKTSGSEPSNKRMKVKHDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYQCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCKSLQIRQYAYLSDKSSAVPVMKEDAIGYKVDAGKEPPVGTTSTPQNKPMNWEDFFIQQENDSIFKQNVTDGSTEFEFIIPESY
SIO_010081: Zbtb33
subclass of: SO_0000673
so part of: Zbtb33
location: complement(9729735..9731780)
location: region:9729735-9731780:-1
so has part: feature:9729735-9731780:-1:exon

XP_005358500.1
type: Protein
SIO_000068: ncbiprotein

position:9729735:-1
position: 9729735
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9731780:-1
position: 9731780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9729735-9731780:-1:exon

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 79684
estimated length: unknown
gap type: between scaffolds
so part of: sequence
location: 9781924..9782023
location: region:9781924-9782023:1
so has part: feature:9781924-9782023:1:region

position:9781924:1
position: 9781924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9782023:1
position: 9782023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9781924-9782023:1:region

LOC101992603
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC101992603
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 9954227..9954807
location: region:9954227-9954807:1
so has part: feature:9954227-9954807:1:exon

101992603
type: Gene
SIO_000068: ncbigene

position:9954227:1
position: 9954227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9954807:1
position: 9954807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9954227-9954807:1:exon

LOC101992603
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC101992603
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
pseudo: true
SIO_010081: LOC101992603
subclass of: SO_0000673
so part of: LOC101992603
location: 9954227..9954807
location: region:9954227-9954807:1
so has part: feature:9954227-9954807:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9954227-9954807:1:exon

Gpc4
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: Gpc4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(9978041..10086346)
location: region:9978041-10086346:-1
so has part: feature:9978041-10086346:-1:exon
subclass of: SO_0000010

101994020
type: Gene
SIO_000068: ncbigene

position:9978041:-1
position: 9978041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10086346:-1
position: 10086346
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9978041-10086346:-1:exon

Gpc4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Gpc4
product: glypican 4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
transcript id: XM_005358455.2
SIO_010081: Gpc4
subclass of: SO_0000673
so part of: Gpc4
location: complement(join(9978041..9978752,9978845..9979020,9979575..9979711,9981565..9981711,9981804..9981934,9987407..9987572,9999677..10000068,10011574..10011732,10085538..10086346))
location: region:9978041-10086346:-1
so has part: feature:10085538-10086346:-1:exon
so has part: feature:10011574-10011732:-1:exon
so has part: feature:9999677-10000068:-1:exon
so has part: feature:9987407-9987572:-1:exon
so has part: feature:9981804-9981934:-1:exon
so has part: feature:9981565-9981711:-1:exon
so has part: feature:9979575-9979711:-1:exon
so has part: feature:9978845-9979020:-1:exon
so has part: feature:9978041-9978752:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10085538-10086346:-1:exon

position:10085538:-1
position: 10085538
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:10011574-10011732:-1:exon

position:10011574:-1
position: 10011574
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10011732:-1
position: 10011732
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:9999677-10000068:-1:exon

position:9999677:-1
position: 9999677
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10000068:-1
position: 10000068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:9987407-9987572:-1:exon

position:9987407:-1
position: 9987407
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9987572:-1
position: 9987572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:9981804-9981934:-1:exon

position:9981804:-1
position: 9981804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9981934:-1
position: 9981934
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:9981565-9981711:-1:exon

position:9981565:-1
position: 9981565
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9981711:-1
position: 9981711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:9979575-9979711:-1:exon

position:9979575:-1
position: 9979575
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9979711:-1
position: 9979711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:9978845-9979020:-1:exon

position:9978845:-1
position: 9978845
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9979020:-1
position: 9979020
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:9978041-9978752:-1:exon

position:9978752:-1
position: 9978752
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Gpc4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Gpc4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: glypican-4
translation: MARLGLLALLCTLAALTASLLAAELKSKSCSEVRRLYVSKGFNKNDAPLYEINGDHLKICPQGYTCCSQEMEEKYGLQSKDDFQSVLSEQCNHLQAVFASRYKKFDEFFKELLENAEKSLNDMFVKTYGHLYMQNSELFKDLFVELKRYYVAGNVNLGDMLNDFWSRLLERMFRLVNSQYHFTDEYLECVSKYTEQLKPFGDVPRKLKLQVTRAFVAARTFAQGLAVARDIVSKVSVVNPTAQCTEALLKMIYCPHCRGLVSVKPCFNYCSNIMRGCLANQGDLDFEWNNFIDAMLMVAERLEGPFNIESVMDPIDVKISDAIMNMQDNSVQVSQKVFQGCGPPKSLPAGRISRSISESAFSARFRPYHPEQRPTTAAGTSLDRLVTDVKEKLKQAKKFWSSLPTTVCNDERMAAGNGNEDDCWNGKGKSRYLFAVTGNGLANQGNNPEVQVDTTKQDMLILRQIMALRVMTNKMKNAYNGNDVDFFDISDESSGEGSGSGCEYQQCPSEFEYNATDHSGKSANEKANSAGTHAEAKPYLLTALCLLFFAVQREWR
SIO_010081: Gpc4
subclass of: SO_0000673
so part of: Gpc4
location: complement(join(9978550..9978752,9978845..9979020,9979575..9979711,9981565..9981711,9981804..9981934,9987407..9987572,9999677..10000068,10011574..10011732,10085538..10085697))
location: region:9978550-10085697:-1
so has part: feature:10085538-10085697:-1:exon
so has part: feature:10011574-10011732:-1:exon
so has part: feature:9999677-10000068:-1:exon
so has part: feature:9987407-9987572:-1:exon
so has part: feature:9981804-9981934:-1:exon
so has part: feature:9981565-9981711:-1:exon
so has part: feature:9979575-9979711:-1:exon
so has part: feature:9978845-9979020:-1:exon
so has part: feature:9978550-9978752:-1:exon

XP_005358512.1
type: Protein
SIO_000068: ncbiprotein

position:9978550:-1
position: 9978550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10085697:-1
position: 10085697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10085538-10085697:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:10011574-10011732:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:9999677-10000068:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:9987407-9987572:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:9981804-9981934:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:9981565-9981711:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:9979575-9979711:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:9978845-9979020:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:9978550-9978752:-1:exon

LOC101993734
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC101993734
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 10091917..10092424
location: region:10091917-10092424:1
so has part: feature:10091917-10092424:1:exon

101993734
type: Gene
SIO_000068: ncbigene

position:10091917:1
position: 10091917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10092424:1
position: 10092424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10091917-10092424:1:exon

LOC101993734
type: Exon
subclass of: SO_0000147
RO_0002162: 79684
gene: LOC101993734
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins, and 70% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC101993734
subclass of: SO_0000673
so part of: LOC101993734
location: 10091917..10092424
location: region:10091917-10092424:1
so has part: feature:10091917-10092424:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10091917-10092424:1:exon

Gpc3
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: Gpc3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(10193124..10549188)
location: region:10193124-10549188:-1
so has part: feature:10193124-10549188:-1:exon
subclass of: SO_0000010

101994299
type: Gene
SIO_000068: ncbigene

position:10193124:-1
position: 10193124
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10549188:-1
position: 10549188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10193124-10549188:-1:exon

Gpc3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Gpc3
product: glypican 3, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_026784932.1
SIO_010081: Gpc3
subclass of: SO_0000673
so part of: Gpc3
location: complement(join(10193124..10193650,10281676..10281796,10304154..10304279,10312282..10312415,10347083..10347777,10514848..10515009,10548628..10549188))
location: region:10193124-10549188:-1
so has part: feature:10548628-10549188:-1:exon
so has part: feature:10514848-10515009:-1:exon
so has part: feature:10347083-10347777:-1:exon
so has part: feature:10312282-10312415:-1:exon
so has part: feature:10304154-10304279:-1:exon
so has part: feature:10281676-10281796:-1:exon
so has part: feature:10193124-10193650:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10548628-10549188:-1:exon

position:10548628:-1
position: 10548628
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:10514848-10515009:-1:exon

position:10514848:-1
position: 10514848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10515009:-1
position: 10515009
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:10347083-10347777:-1:exon

position:10347083:-1
position: 10347083
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10347777:-1
position: 10347777
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:10312282-10312415:-1:exon

position:10312282:-1
position: 10312282
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10312415:-1
position: 10312415
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:10304154-10304279:-1:exon

position:10304154:-1
position: 10304154
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10304279:-1
position: 10304279
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:10281676-10281796:-1:exon

position:10281676:-1
position: 10281676
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10281796:-1
position: 10281796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:10193124-10193650:-1:exon

position:10193650:-1
position: 10193650
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Gpc3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Gpc3
product: glypican 3, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
transcript id: XM_005358456.3
SIO_010081: Gpc3
subclass of: SO_0000673
so part of: Gpc3
location: complement(join(10193124..10193650,10235449..10235608,10281676..10281796,10304154..10304279,10312282..10312415,10347083..10347777,10514848..10515009,10548628..10549185))
location: region:10193124-10549185:-1
so has part: feature:10548628-10549185:-1:exon
so has part: feature:10514848-10515009:-1:exon
so has part: feature:10347083-10347777:-1:exon
so has part: feature:10312282-10312415:-1:exon
so has part: feature:10304154-10304279:-1:exon
so has part: feature:10281676-10281796:-1:exon
so has part: feature:10235449-10235608:-1:exon
so has part: feature:10193124-10193650:-1:exon

position:10549185:-1
position: 10549185
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10548628-10549185:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:10514848-10515009:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:10347083-10347777:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10312282-10312415:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:10304154-10304279:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:10281676-10281796:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:10235449-10235608:-1:exon

position:10235449:-1
position: 10235449
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10235608:-1
position: 10235608
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:10193124-10193650:-1:exon

Gpc3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Gpc3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: glypican-3 isoform X1
translation: MAGTVRTACLLVAMLIGLDCLGQAQPPPPPDATCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAIFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFDFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYTQMMNPGLPESVLDINECLRGARRDLKVFGSFPKLIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEIDKYWREYILSLEELVNGMYRIYDMENVLLGLFSTIHDSIQYVQKNGGKLTTTIGKLCAHSQQRQYRSAYYPEDLFIDKKVLKVAHVEYEETLSSRRRELVQKLKTFINFYSALPGYVCSHSPVAENDSLCWNGQELVERYSQKAARNGMKNQFNLHELKLKGPEPVVSQIIDKLKHINQLLRTMSVPKGKVLDKNLDEEGLESGDCGDDEDECIGSSGDGMMKVKNQLRFLAELAYDLDVDDTPGNKDHVDQKDNEIITSHSVGNMLSPLKILISVAVYAASFFFLVH
SIO_010081: Gpc3
subclass of: SO_0000673
so part of: Gpc3
location: complement(join(10193481..10193650,10235449..10235608,10281676..10281796,10304154..10304279,10312282..10312415,10347083..10347777,10514848..10515009,10548628..10548799))
location: region:10193481-10548799:-1
so has part: feature:10548628-10548799:-1:exon
so has part: feature:10514848-10515009:-1:exon
so has part: feature:10347083-10347777:-1:exon
so has part: feature:10312282-10312415:-1:exon
so has part: feature:10304154-10304279:-1:exon
so has part: feature:10281676-10281796:-1:exon
so has part: feature:10235449-10235608:-1:exon
so has part: feature:10193481-10193650:-1:exon

XP_005358513.1
type: Protein
SIO_000068: ncbiprotein

position:10193481:-1
position: 10193481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10548799:-1
position: 10548799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10548628-10548799:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:10514848-10515009:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:10347083-10347777:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10312282-10312415:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:10304154-10304279:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:10281676-10281796:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:10235449-10235608:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:10193481-10193650:-1:exon

Gpc3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Gpc3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: glypican-3 isoform X2
translation: MAGTVRTACLLVAMLIGLDCLGQAQPPPPPDATCHQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAIFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFDFVGEFFTDVSLYILGSDINVDDMVNELFDSLFPVIYTQMMNPGLPESVLDINECLRGARRDLKVFGSFPKLIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGGYCNVVMQGCMAGVVEIDKYWREYILSLEELVNGMYRIYDMENVLLGLFSTIHDSIQYVQKNGGKLTTTIGKLCAHSQQRQYRSAYYPEDLFIDKKVLKVAHVEYEETLSSRRRELVQKLKTFINFYSALPGYVCSHSPVAENDSLCWNGQELVERYSQKAARNGMKNQFNLHELKLKGPEPVVSQIIDKLKHINQSWRMIWMWTILQGTRTM
SIO_010081: Gpc3
subclass of: SO_0000673
so part of: Gpc3
location: complement(join(10193597..10193650,10281676..10281796,10304154..10304279,10312282..10312415,10347083..10347777,10514848..10515009,10548628..10548799))
location: region:10193597-10548799:-1
so has part: feature:10548628-10548799:-1:exon
so has part: feature:10514848-10515009:-1:exon
so has part: feature:10347083-10347777:-1:exon
so has part: feature:10312282-10312415:-1:exon
so has part: feature:10304154-10304279:-1:exon
so has part: feature:10281676-10281796:-1:exon
so has part: feature:10193597-10193650:-1:exon

XP_026640733.1
type: Protein
SIO_000068: ncbiprotein

position:10193597:-1
position: 10193597
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10548628-10548799:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:10514848-10515009:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:10347083-10347777:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10312282-10312415:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:10304154-10304279:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:10281676-10281796:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:10193597-10193650:-1:exon

Ccdc160
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: Ccdc160
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 10733682..10744275
location: region:10733682-10744275:1
so has part: feature:10733682-10744275:1:exon
subclass of: SO_0000010

101994988
type: Gene
SIO_000068: ncbigene

position:10733682:1
position: 10733682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10744275:1
position: 10744275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10733682-10744275:1:exon

Ccdc160
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Ccdc160
product: coiled-coil domain containing 160, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_005358459.3
SIO_010081: Ccdc160
subclass of: SO_0000673
so part of: Ccdc160
location: join(10733682..10733838,10742928..10744275)
location: region:10733682-10744275:1
so has part: feature:10733682-10733838:1:exon
so has part: feature:10742928-10744275:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10733682-10733838:1:exon

position:10733838:1
position: 10733838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:10742928-10744275:1:exon

position:10742928:1
position: 10742928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Ccdc160
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Ccdc160
product: coiled-coil domain containing 160, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_005358460.3
SIO_010081: Ccdc160
subclass of: SO_0000673
so part of: Ccdc160
location: join(10736163..10736259,10742928..10744275)
location: region:10736163-10744275:1
so has part: feature:10736163-10736259:1:exon
so has part: feature:10742928-10744275:1:exon

position:10736163:1
position: 10736163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10736163-10736259:1:exon

position:10736259:1
position: 10736259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:10742928-10744275:1:exon

Ccdc160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Ccdc160
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: coiled-coil domain-containing protein 160
translation: MDARRKHWKNNKLTPFLNEHGVLEDAAPLPSFSEETSSNKSWRMGRVSNFSSRNAQEGNKYMRKDFYSQIAERDQDPNLRETRMNASKNAANANSVFWDFLDLDGGATKESSHSRESASAWTEKELSAAAQVGKKKWTEAMPPKLRLHLLNEELGELNLKCREIEEDFENAEKELLNSRKEASRRYVNFQETGTAASKNDWELQALKNDLTEKATNVKNLTKELQQAKEVMYRLNLENRNLKDSVKKLKRQTELSTALLREEMKLFYELEMEKIHVELGAIKSELRAEKSLRAKNSRALELLGRHVASVVRSSRTADHFTGNDL
SIO_010081: Ccdc160
subclass of: SO_0000673
so part of: Ccdc160
location: 10742931..10743905
location: region:10742931-10743905:1
so has part: feature:10742931-10743905:1:exon

XP_005358516.1
type: Protein
SIO_000068: ncbiprotein

position:10742931:1
position: 10742931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10743905:1
position: 10743905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10742931-10743905:1:exon

Ccdc160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Ccdc160
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: coiled-coil domain-containing protein 160
translation: MDARRKHWKNNKLTPFLNEHGVLEDAAPLPSFSEETSSNKSWRMGRVSNFSSRNAQEGNKYMRKDFYSQIAERDQDPNLRETRMNASKNAANANSVFWDFLDLDGGATKESSHSRESASAWTEKELSAAAQVGKKKWTEAMPPKLRLHLLNEELGELNLKCREIEEDFENAEKELLNSRKEASRRYVNFQETGTAASKNDWELQALKNDLTEKATNVKNLTKELQQAKEVMYRLNLENRNLKDSVKKLKRQTELSTALLREEMKLFYELEMEKIHVELGAIKSELRAEKSLRAKNSRALELLGRHVASVVRSSRTADHFTGNDL
SIO_010081: Ccdc160
subclass of: SO_0000673
so part of: Ccdc160
location: 10742931..10743905
location: region:10742931-10743905:1
so has part: feature:10742931-10743905:1:exon

XP_005358517.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10742931-10743905:1:exon

Phf6
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: Phf6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 10836357..10878250
location: region:10836357-10878250:1
so has part: feature:10836357-10878250:1:exon
subclass of: SO_0000010

101995461
type: Gene
SIO_000068: ncbigene

position:10836357:1
position: 10836357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10878250:1
position: 10878250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10836357-10878250:1:exon

Phf6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Phf6
product: PHD finger protein 6, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
transcript id: XM_005358461.3
SIO_010081: Phf6
subclass of: SO_0000673
so part of: Phf6
location: join(10836357..10836541,10840501..10840679,10840901..10841002,10854879..10855012,10855265..10855308,10863176..10863342,10863487..10863630,10865536..10865640,10869257..10869390,10874835..10874961,10875285..10878250)
location: region:10836357-10878250:1
so has part: feature:10836357-10836541:1:exon
so has part: feature:10840501-10840679:1:exon
so has part: feature:10840901-10841002:1:exon
so has part: feature:10854879-10855012:1:exon
so has part: feature:10855265-10855308:1:exon
so has part: feature:10863176-10863342:1:exon
so has part: feature:10863487-10863630:1:exon
so has part: feature:10865536-10865640:1:exon
so has part: feature:10869257-10869390:1:exon
so has part: feature:10874835-10874961:1:exon
so has part: feature:10875285-10878250:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10836357-10836541:1:exon

position:10836541:1
position: 10836541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:10840501-10840679:1:exon

position:10840501:1
position: 10840501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10840679:1
position: 10840679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:10840901-10841002:1:exon

position:10840901:1
position: 10840901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10841002:1
position: 10841002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:10854879-10855012:1:exon

position:10854879:1
position: 10854879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10855012:1
position: 10855012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:10855265-10855308:1:exon

position:10855265:1
position: 10855265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10855308:1
position: 10855308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:10863176-10863342:1:exon

position:10863176:1
position: 10863176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10863342:1
position: 10863342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:10863487-10863630:1:exon

position:10863487:1
position: 10863487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10863630:1
position: 10863630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:10865536-10865640:1:exon

position:10865536:1
position: 10865536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10865640:1
position: 10865640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:10869257-10869390:1:exon

position:10869257:1
position: 10869257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10869390:1
position: 10869390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:10874835-10874961:1:exon

position:10874835:1
position: 10874835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10874961:1
position: 10874961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:10875285-10878250:1:exon

position:10875285:1
position: 10875285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Phf6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 79684
gene: Phf6
product: PHD finger protein 6, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_026784844.1
SIO_010081: Phf6
subclass of: SO_0000673
so part of: Phf6
location: join(10836567..10836702,10840501..10840679,10840901..10841002,10854879..10855012,10855265..10855308,10863176..10863342,10863487..10863630,10865536..10865640,10869257..10869390,10874835..10878250)
location: region:10836567-10878250:1
so has part: feature:10836567-10836702:1:exon
so has part: feature:10840501-10840679:1:exon
so has part: feature:10840901-10841002:1:exon
so has part: feature:10854879-10855012:1:exon
so has part: feature:10855265-10855308:1:exon
so has part: feature:10863176-10863342:1:exon
so has part: feature:10863487-10863630:1:exon
so has part: feature:10865536-10865640:1:exon
so has part: feature:10869257-10869390:1:exon
so has part: feature:10874835-10878250:1:exon

position:10836567:1
position: 10836567
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10836567-10836702:1:exon

position:10836702:1
position: 10836702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:10840501-10840679:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:10840901-10841002:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10854879-10855012:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:10855265-10855308:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:10863176-10863342:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:10863487-10863630:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:10865536-10865640:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:10869257-10869390:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:10874835-10878250:1:exon

Phf6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Phf6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: PHD finger protein 6
translation: MSSSVEQKKGSTRQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNESLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRKHKKTAHNSEADLEESFNEHELEPSSPKTKKKSRKGRPRKTNFKGLTEDTRSTSSHGTDEIESSSYRDRSPHRSSPNDTRPKCGFCHVGEEENEARGKLHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKCTLCSQPGATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERESKSRGRLAIDQQLTQQQLNGN
SIO_010081: Phf6
subclass of: SO_0000673
so part of: Phf6
location: join(10840542..10840679,10840901..10841002,10854879..10855012,10855265..10855308,10863176..10863342,10863487..10863630,10865536..10865640,10869257..10869390,10874835..10874961)
location: region:10840542-10874961:1
so has part: feature:10840542-10840679:1:exon
so has part: feature:10840901-10841002:1:exon
so has part: feature:10854879-10855012:1:exon
so has part: feature:10855265-10855308:1:exon
so has part: feature:10863176-10863342:1:exon
so has part: feature:10863487-10863630:1:exon
so has part: feature:10865536-10865640:1:exon
so has part: feature:10869257-10869390:1:exon
so has part: feature:10874835-10874961:1:exon

XP_026640645.1
type: Protein
SIO_000068: ncbiprotein

position:10840542:1
position: 10840542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10840542-10840679:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:10840901-10841002:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:10854879-10855012:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10855265-10855308:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:10863176-10863342:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:10863487-10863630:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:10865536-10865640:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:10869257-10869390:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:10874835-10874961:1:exon

Phf6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 79684
gene: Phf6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: PHD finger protein 6
translation: MSSSVEQKKGSTRQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNESLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRKHKKTAHNSEADLEESFNEHELEPSSPKTKKKSRKGRPRKTNFKGLTEDTRSTSSHGTDEIESSSYRDRSPHRSSPNDTRPKCGFCHVGEEENEARGKLHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKCTLCSQPGATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERESKSRGRLAIDQQLTQQQLNGN
SIO_010081: Phf6
subclass of: SO_0000673
so part of: Phf6
location: join(10840542..10840679,10840901..10841002,10854879..10855012,10855265..10855308,10863176..10863342,10863487..10863630,10865536..10865640,10869257..10869390,10874835..10874961)
location: region:10840542-10874961:1
so has part: feature:10840542-10840679:1:exon
so has part: feature:10840901-10841002:1:exon
so has part: feature:10854879-10855012:1:exon
so has part: feature:10855265-10855308:1:exon
so has part: feature:10863176-10863342:1:exon
so has part: feature:10863487-10863630:1:exon
so has part: feature:10865536-10865640:1:exon
so has part: feature:10869257-10869390:1:exon
so has part: feature:10874835-10874961:1:exon

XP_005358518.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10840542-10840679:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:10840901-10841002:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:10854879-10855012:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10855265-10855308:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:10863176-10863342:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:10863487-10863630:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:10865536-10865640:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:10869257-10869390:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:10874835-10874961:1:exon

LOC101992879
type: Gene
subclass of: SO_0000704
RO_0002162: 79684
gene: LOC101992879
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(10906640..10908126)
location: region:10906640-10908126:-1
so has part: feature:10906640-10908126:-1:exon

101992879
type: Gene
SIO_000068: ncbigene

position:10906640:-1
position: 10906640
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10908126:-1
position: 10908126
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10906640-10908126:-1:exon