Sugiyamaella lignohabitans strain CBS 10342 chromosome B, complete sequence.
type: Entry
definition: Sugiyamaella lignohabitans strain CBS 10342 chromosome B, complete sequence.
sequence version: NC_031674.1
sequence date: 2016-10-25
sequence: sequence
division: CON
label: NC_031674.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA342695
dblink: SAMN04417247
keyword: RefSeq
source: Sugiyamaella lignohabitans
organism: Sugiyamaella lignohabitans
taxonomy: Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Trichomonascaceae; Sugiyamaella.
reference: 1
reference: 2
reference: 3
comment: PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CP014503.\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000340
sequence length: 4956242
topology: linear
so has quality: SO_0000987
location: 1..4956242
location: region:1-4956242:1
RO_0002162: 796027

NC_031674
type: RefSeq
SIO_000068: refseq

PRJNA342695
type: BioProject
SIO_000068: bioproject

SAMN04417247
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence and transcriptome regulation of the pentose utilising yeast Sugiyamaella lignohabitans
author: Bellasio, M.
author: Peymann, A.
author: Valli, M.
author: Sipitzky, M.
author: Graf, A.
author: Sauer, M.
author: Marx, H.
author: Mattanovich, D.
journal: Unpublished

2
title: Direct Submission
journal: Submitted (25-OCT-2016) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Peymann, A.
author: Graf, A.
journal: Submitted (18-FEB-2016) Department of Biotechnology, University of Natural Resources and Life Sciences, Muthgasse 18, Vienna, Vienna 1190, Austria

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4956242:1
position: 4956242
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4956242:1:source
so part of: sequence
organism: Sugiyamaella lignohabitans
mol type: genomic DNA
strain: CBS 10342
chromosome: B

796027
type: Taxonomy
SIO_000068: taxonomy

AWJ20_1962
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SDO1
locus tag: AWJ20_1962
so part of: sequence
location: <2139..>2819
location: region:2139-2819:1
so has part: feature:2139-2819:1:exon
subclass of: SO_0000010

30033821
type: Gene
SIO_000068: ncbigene

position:2139:1
position: 2139
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:2819:1
position: 2819
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2139-2819:1:exon

AWJ20_1962
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SDO1
locus tag: AWJ20_1962
product: guanine nucleotide exchange factor SDO1
transcript id: XM_018878881.1
SIO_010081: AWJ20_1962
subclass of: SO_0000673
so part of: AWJ20_1962
location: <2139..>2819
location: region:2139-2819:1
so has part: feature:2139-2819:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2139-2819:1:exon

AWJ20_1962
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SDO1
locus tag: AWJ20_1962
inference: similar to AA sequence:KEGG_Orthology:K14574
codon start: 1
product: guanine nucleotide exchange factor SDO1
translation: MLTSGSSSHNSHSNIDREKDLDEVLQIPQVFVHVSKGQVANNEDLKAAFGTTDQNVIIQEILKKGELQVGGKEREALSNQMHAEIIQLIAAKCVNPGTKRPYPTSIIDKALSESNFNMVPNKSAKIQALDAIKLLMQSNIIPIVRARMKVLIRVDSSKDAKKFSDKVKALTAEIDDEDWSGKWELTAFIDPGNFRILDELIQKETKGRGSVEVLDTAVVKEGDQDL
SIO_010081: AWJ20_1962
subclass of: SO_0000673
so part of: AWJ20_1962
location: 2139..2819
location: region:2139-2819:1
so has part: feature:2139-2819:1:exon

XP_018736851.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2139-2819:1:exon

AWJ20_1963
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_1963
so part of: sequence
location: complement(<2859..>3389)
location: region:2859-3389:-1
so has part: feature:2859-3389:-1:exon
subclass of: SO_0000010

30033822
type: Gene
SIO_000068: ncbigene

position:2859:-1
position: 2859
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:3389:-1
position: 3389
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2859-3389:-1:exon

AWJ20_1963
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_1963
product: hypothetical protein
transcript id: XM_018878882.1
SIO_010081: AWJ20_1963
subclass of: SO_0000673
so part of: AWJ20_1963
location: complement(<2859..>3389)
location: region:2859-3389:-1
so has part: feature:2859-3389:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2859-3389:-1:exon

AWJ20_1963
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_1963
inference: similar to AA sequence:KEGG_Orthology:K11877
codon start: 1
product: hypothetical protein
translation: MKFDDLQDLAGTLHNMSESNDKIEFPAASKTKSIELQDGHIIDVVTVGFEDKISVMVNYDGRIGKIYYVPLLASSTSHLANYENRDDDGNPENDLLPLSHLTPMPLVGGSSDHDVQGRLYASMIASIVSRQSPDENRTVLVGLGTSIGPRPDEEITIEHRKQLLEIVKLVQECRVW
SIO_010081: AWJ20_1963
subclass of: SO_0000673
so part of: AWJ20_1963
location: complement(2859..3389)
location: region:2859-3389:-1
so has part: feature:2859-3389:-1:exon

XP_018736852.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2859-3389:-1:exon

AWJ20_1964
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_1964
so part of: sequence
location: complement(<4700..>5089)
location: region:4700-5089:-1
so has part: feature:4700-5089:-1:exon
subclass of: SO_0000010

30033823
type: Gene
SIO_000068: ncbigene

position:4700:-1
position: 4700
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:5089:-1
position: 5089
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4700-5089:-1:exon

AWJ20_1964
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_1964
product: hypothetical protein
transcript id: XM_018878883.1
SIO_010081: AWJ20_1964
subclass of: SO_0000673
so part of: AWJ20_1964
location: complement(<4700..>5089)
location: region:4700-5089:-1
so has part: feature:4700-5089:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4700-5089:-1:exon

AWJ20_1964
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_1964
inference: similar to AA sequence:KEGG_Orthology:K08968
codon start: 1
product: hypothetical protein
translation: MYKSLESSPLSKVNWAGFYVVDPKDSSQLILGPFHGQVACQIIKIGKGVCGTAASSRETQLVKDVEKFPGHIACDGDTKSEIVVPIVDKSSGKVFGVIDIDCQELEGFDEEDQKYLEILAEKLIKYCKW
SIO_010081: AWJ20_1964
subclass of: SO_0000673
so part of: AWJ20_1964
location: complement(4700..5089)
location: region:4700-5089:-1
so has part: feature:4700-5089:-1:exon

XP_018736853.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4700-5089:-1:exon

AWJ20_1965
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_1965
so part of: sequence
location: complement(<5690..>9004)
location: region:5690-9004:-1
so has part: feature:5690-9004:-1:exon
subclass of: SO_0000010

30033824
type: Gene
SIO_000068: ncbigene

position:5690:-1
position: 5690
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:9004:-1
position: 9004
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5690-9004:-1:exon

AWJ20_1965
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_1965
product: 1-phosphatidylinositol-4-phosphate 5-kinase
transcript id: XM_018878884.1
SIO_010081: AWJ20_1965
subclass of: SO_0000673
so part of: AWJ20_1965
location: complement(<5690..>9004)
location: region:5690-9004:-1
so has part: feature:5690-9004:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5690-9004:-1:exon

AWJ20_1965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_1965
inference: similar to AA sequence:KEGG_Orthology:K00889
note: Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]
codon start: 1
product: 1-phosphatidylinositol-4-phosphate 5-kinase
translation: MLAASSPSVTQLQLPFSYQRHSNEAFESEKSRQHSSGTSTSTDTSGGASVSGSDDEHKLNSKLSIVTNGGTLVADNEHQSSDDIDDAFLSHNSLSARSMSSLATTVDSRDYEKSISTNIAVHSAPLDGQMTSSASSINGLSTTFLPVGDFHVDGPVNGTDDVSSLDNNTVEIETDGTRGFDNDDASYARGQRFGSDTFYDAPNSNNTSSSLTADSLLTVTDNADHREQPASQPHESSQLASYKGLRVSTKGDLPTLSCAPEVVANELSTVNSEERSVNEKPSENGNSIEHEGSTAHGEFLTAPTMDSAEATSGTTSTTSTSSTPTSISNSSTATSDSSVTTPVVSATPLPFTPPQPNYHSPKSQSASTFTPTSTSVSKPARNDSSSNSGPNQSPLTTQASNARTSSTSSVATANVLANSSSTSPVPRQMPTFRGSLPGIESSPQLLDPIPSHVRTSIGSTPPSPNVRTSVGSAFSFDDQRYLSRASTGSHHSIASPTSPVSAQQLASLRSPNPSASSSSSLPSMVRERVSNAGSVAVPNVNSTGAVAMTGSTIATANIAPTTLMGPPQLPTRALSQQIVSTSNQSNNRNSLSSQRSAASSQEVPSIRRLSLYSHRNSFSFSRRRSIAGPPIPSNGQELDRSATVIEIERLREEIIVQRELRRRRREFLEDERVLMGTKVSEGHVNYVTAYNMLTGIRVSVSRCNGKVDRPLNDEDFVAKNKLAFDVSGNELTPSARYDFKFKDYAPWVFRHLRELFKLDPADYLMSLTSKYIVSELGSPGKSGSFFYFSRDYRFIIKTIHHSEHKMLRKILKDYYNHVKNNPNTLISQFYGLHRVKLPFGRKIHFIVMNNLFPPHRDIHRTYDLKGSTQGRRLQPQDSKKAVVYKDLNWIDAGESIMLGPTKKRQFLDQLEIDVALLKRLNIMDYSLLIGIHDLTKGNTENIRDNTLQVFEPGSATISQTKVNELRKALTTASPTALAQLDLVLNQYERNDFIFYADSGGFRATNENNEPLNDIYYLGIIDCLTPYTFTKRVETFFKGLSNAHVTISAIPALEYGDRFFKFIKSVVVSKREGQQNVIGEETAPSAIEVHLPVLSEASTEARSVN
SIO_010081: AWJ20_1965
subclass of: SO_0000673
so part of: AWJ20_1965
location: complement(5690..9004)
location: region:5690-9004:-1
so has part: feature:5690-9004:-1:exon

XP_018736854.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5690-9004:-1:exon

AWJ20_1966
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_1966
so part of: sequence
location: complement(<11084..>13663)
location: region:11084-13663:-1
so has part: feature:11084-13663:-1:exon
subclass of: SO_0000010

30033825
type: Gene
SIO_000068: ncbigene

position:11084:-1
position: 11084
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:13663:-1
position: 13663
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11084-13663:-1:exon

AWJ20_1966
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_1966
product: hypothetical protein
transcript id: XM_018878885.1
SIO_010081: AWJ20_1966
subclass of: SO_0000673
so part of: AWJ20_1966
location: complement(<11084..>13663)
location: region:11084-13663:-1
so has part: feature:11084-13663:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11084-13663:-1:exon

AWJ20_1966
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_1966
inference: similar to AA sequence:KEGG_Orthology:K01192
codon start: 1
product: hypothetical protein
translation: MTSGPVKPTHSTTLANWSYRKAGTEKWTASKHGRPATQIHVDLLDNGEIPDPFLDENEKLVQWVADEEWEYQAEFTVSSEQLESGKKTDFVYEGLDTVATVYLNDKQILHSENMFHIGRVDITKDVKVGTNNVRIFFANALIRSRQLEKIHGKMRLFNGETSRVQLRKSQYHYGWDWGPLLMTSGPYRPVKIETYNYLVSDVFVNAKVSDDLKEVTVSIEGEIEGSKGEPGYLPLQFKVDIKSPSGEQVVNKTFDISVDKDGVSKNSLKIENPQLWYPANYGEQHLYHITVDVVSGSETIQSIEKDVGFRKVELIQRPLVDQEGTTFFFQVNNIPIYCAGGCWIPAHSFTTCLTNDDYKKWIKLMIDGHQNMVRIWGGGIYEEDIFYQECDRLGIMVWQDFMFACGQYPGYPEFLESVSKEAVDQLKRLRNYCSIVLYAGNNEDYQVAEAYPEIEYDPNDTTSDYLKTNFPARHIYEKMFPELVADYSPAVPYHPGSPWGGKTSSDPTIGDIHQWNVWHGNQEKYQDWYKLGGRFVSEFGMEALPDRKTVDQFVTKEHEKYPQSRTMDLHNKSDGFERRLALYVMENIKVEGMDIDNWIYATQLMQSECLAYAYRCWRRQWKGPGREYCAGALVWQVNDCWPVTSWAIVDFYYRPKLSYYAVKRESSPVWIGMYRNVNYLSEEDKKAAEEVPTFDYFKREHFEDIWGVNNTIHEKKVVLHVEVYEIESGKLVETLPPKPVTLKANQTTEIIQNLPVESKTHHVVYCRLVDADSNKVIARGGDWPQPLKYLSFPDRQVKVKVEDGQVRLSTNKPVKGVEITVKNKDLFLEDNGIDLFPGDDQTVIIRGLLSTDEVTIRHY
SIO_010081: AWJ20_1966
subclass of: SO_0000673
so part of: AWJ20_1966
location: complement(11084..13663)
location: region:11084-13663:-1
so has part: feature:11084-13663:-1:exon

XP_018736855.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11084-13663:-1:exon

AWJ20_1967
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_1967
so part of: sequence
location: <15080..>16726
location: region:15080-16726:1
so has part: feature:15080-16726:1:exon
subclass of: SO_0000010

30033826
type: Gene
SIO_000068: ncbigene

position:15080:1
position: 15080
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:16726:1
position: 16726
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15080-16726:1:exon

AWJ20_1967
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_1967
product: hypothetical protein
transcript id: XM_018878886.1
SIO_010081: AWJ20_1967
subclass of: SO_0000673
so part of: AWJ20_1967
location: <15080..>16726
location: region:15080-16726:1
so has part: feature:15080-16726:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15080-16726:1:exon

AWJ20_1967
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_1967
codon start: 1
product: hypothetical protein
translation: MSDQRSGNEHERSPLLAYSPNDESAPHPLPRSYTISEGQDENGILMNSGNHHETVNDYNPSSDSSRRSSSKLNFNDVNFGNNPFKKRHFSYSAGGTSPSRHHSFYSQLQQHGSRISLGDAAALELDVERLENLHERRPFRLIGKSCPLRDWSRYCKTEEQIRQISRAKAIQEYYSKQNDLIERYKAIDRLLDSGIPQSMLKVYGDDIDLGAPNGTTSKKADDPPSPPGNRQGVPANIDEESNLLGGESREDKSNMVMFAIYVNFVINFVLLVGKVIVVLLTNSLSVVASLVDSILDFLSTFIIWASTRLVDQRDWKTKHLYPVGRSRLEPIGVLVFSILIIVSFLKVGDEAINKLLEGRQGSAVDIGIPSIIIMSLTIVVKVFCYLWCRTIDSSAVQALAQDAMTDIVFNTFSMLFPLVGHAYDIWWLDPFGALALSAYIIHSWASTAMEHIDNLTGSAASPEDRQVVLYLCMRFSDSIKYITALNAYHAGDRITVEVDIVLDDKYNLRDCHDIAEALQYAIETLPFVERAFVHLDYRRGNFTGHIDR
SIO_010081: AWJ20_1967
subclass of: SO_0000673
so part of: AWJ20_1967
location: 15080..16726
location: region:15080-16726:1
so has part: feature:15080-16726:1:exon

XP_018736856.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15080-16726:1:exon

AWJ20_1968
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: NAM8
locus tag: AWJ20_1968
so part of: sequence
location: <19208..>20860
location: region:19208-20860:1
so has part: feature:19208-20860:1:exon
subclass of: SO_0000010

30033827
type: Gene
SIO_000068: ncbigene

position:19208:1
position: 19208
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:20860:1
position: 20860
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19208-20860:1:exon

AWJ20_1968
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: NAM8
locus tag: AWJ20_1968
product: Nam8p
transcript id: XM_018878887.1
SIO_010081: AWJ20_1968
subclass of: SO_0000673
so part of: AWJ20_1968
location: <19208..>20860
location: region:19208-20860:1
so has part: feature:19208-20860:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:19208-20860:1:exon

AWJ20_1968
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: NAM8
locus tag: AWJ20_1968
note: RNA binding protein, component of the U1 snRNP protein; mutants are defective in meiotic recombination and in formation of viable spores, involved in the formation of DSBs through meiosis-specific splicing of REC107 pre-mRNA; Nam8p regulon embraces the meiotic pre-mRNAs of REC107, HFM1, AMA1 SPO22 and PCH2; the putative RNA binding domains RRM2 and RRM3 are required for Nam8p meiotic function; GO_component: GO:0005685 - U1 snRNP [Evidence IDA] [PMID 9630245]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 16618970]; GO_component: GO:0000243 - commitment complex [Evidence IPI] [PMID 10072386]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23222640]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23222640]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IPI] [PMID 10072385]; GO_function: GO:0003729 - mRNA binding [Evidence IPI] [PMID 10072386]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0006376 - mRNA splice site selection [Evidence IMP] [PMID 10072385]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 10072386]; GO_process: GO:0048026 - positive regulation of mRNA splicing, via spliceosome [Evidence IMP] [PMID 10983980]
codon start: 1
product: Nam8p
translation: MSFSYDYSEAQAQQQQQQQSQPQAADISVSNSGEPKVEPSSVTTDASAAGTAGSASSATTTGAAGSVGLDANGAGSVVPPGTSTSPALVAGSPPTASSDSKSTLWMGELEPWYDENAIGKIWQNFGENVTVKLIRDKYSGVNAGYCFVDFGTPQAAAKALSLNGQPIPNSQRVFRLNWASGGGLIDKRDDRGPEFSIFVGDLSPEVTEFNLLQLFQSRYSSCKSAKIMTDPSTNASRGYGFVRFNDETHMQRALAEMQGFFLGNRPIRISTATPKSKPGQNGLVGNSGNGAGPNVGGPGGLYHQMGMGGPPPPAGYYGTPQTLNQFTDPNNTTVFVGGLSGHVTEDELRRYFAGFGDITYVRIPPGKGCGFVQFVQRHSAEAAITQMQGYPIGSSRVRLSWGRSQNAVANAGLNGLPGGPGGNNGPPPGAYRPAPPPPNVYPQLNIPAQPHYGPYGPINPHVQGQVDIHGQQQQQLGGPIPGVAGAAGAAGPVPGVAQVNNGADPLLPLGQDPSEPVPVARLNELYLAARDGRLDRMDADGRGYHGVYAQ
SIO_010081: AWJ20_1968
subclass of: SO_0000673
so part of: AWJ20_1968
location: 19208..20860
location: region:19208-20860:1
so has part: feature:19208-20860:1:exon

XP_018736857.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19208-20860:1:exon

AWJ20_1969
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SWR1
locus tag: AWJ20_1969
so part of: sequence
location: <23364..>27506
location: region:23364-27506:1
so has part: feature:23364-27506:1:exon
subclass of: SO_0000010

30033828
type: Gene
SIO_000068: ncbigene

position:23364:1
position: 23364
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:27506:1
position: 27506
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23364-27506:1:exon

AWJ20_1969
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SWR1
locus tag: AWJ20_1969
product: chromatin-remodeling protein SWR1
transcript id: XM_018878888.1
SIO_010081: AWJ20_1969
subclass of: SO_0000673
so part of: AWJ20_1969
location: <23364..>27506
location: region:23364-27506:1
so has part: feature:23364-27506:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23364-27506:1:exon

AWJ20_1969
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SWR1
locus tag: AWJ20_1969
inference: similar to AA sequence:KEGG_Orthology:K11681
codon start: 1
product: chromatin-remodeling protein SWR1
translation: MKKGKTPSKSTPKDSTNASSSRKKSQKDNNDDESQSESSFDSDDDSEVLYNDFGERINIPSYESDFATDDLSSGDEEKIPRLKFKFSVPNQTVTHPSHLSNPKFGGSLEKYLDSFISLDDDITLEERDSFVDDQVEVRNRIERAKKSGLLQRHTHGLATNIEKFADPPSFDISNNHHSHLVSHAIYFARLMTEERKAHISRARRIANIVDLHFKRLSGAEEKERKQFERSMRQLARRTGAEVMKKWKVAEKVVRQRRQQALEEQQRNEGKLQLNQILKQSAQLLEARTEKMTASVNVDDLSDATDENESAGSLADSDDESDAGGSESSDNDSEVMSSSDDDSEVEDVDDEKLTVEQLKEKYSKLKSVTFNDLENKVDVDIIESEDEDEEETVEIDEKAKSLYEEEQSGDSDESVAMDSEFDSDEDDSDESEEASDEEDEPASLASLFNKPQSNDDKQVEADDEQDEYKEPEIEVDIEANQEDQDSDASDKSIKHSSPDTPTSTPEHEHGEIADGTVTTTSHIPTPFLLRGKLREYQSDGLDWLAGLYNTDTNGILADEMGLGKTIQTISLISYLACEKHIWGPHLIVVPTSVMLNWEMEFKRFAPGFKVMTYYGNPNQRKEKRKGWNKENTWHVCITSYQLVLQDRNVFKRKKWHYMILDEAHNIKNFRSQRWQALLNFNSERRLLLTGTPLQNNLMELWSLLYFLMPSSKGSAMLPDGFANLKDFQEWFARPVDKLVEGGGQDADDETRATVLKLHQILRPYLLRRLKADVEKQMPAKYEHIVYCRLSKRQRYLYDDFMSRAQTRETLSSGNFLSIINCLMQLRKVCNHPDLFEVRPIVTSLAIGKSVVSNFEPLDIIVRKRLLRESYEDHVNLLTLNLLPIKNEGSSFVDWQTIQQLQAYTPMVNELNELVTQLKTSPVQPNYVSIEGNTKYQEYRAKQSRCDKLQHSIYLNFFRCSRKPIYGNDLVSAVTLQNHRPRRSGFDWRQSDALSEMKLSYEQRDEQMKEIITRYAFVTPKVVCLNMTRLTLAPVVEEMQSPENQLLLSRQQTFHEAQVKLSIAFPDKRLLQYDCGKLQRLSTLMRDLIDGGHRALIFTQMTKVLDILEQFLNIHGWRYLRLDGATKVEQRQVLTERFNTDARIPVFILSTRSGGLGINLTGADTVIFYDSDWNPSMDKQCQDRCHRIGQTRDVHIYRFVSEYTIESNILRKATQKQILDNVVIQEGDFTTDYFHKMSVKELVGDVAGVDLDHDLAEPPQNSRSLAKALAQAEDADDAVAASVAMREANLDAEDFSERATSTAATPGRSESEQPTGVSEQSVEPPTGASVEPTDGSVEPSVEPDALQSEQEPDLSDSEESDDGIGHIDDYMIKFIEAGYFGD
SIO_010081: AWJ20_1969
subclass of: SO_0000673
so part of: AWJ20_1969
location: 23364..27506
location: region:23364-27506:1
so has part: feature:23364-27506:1:exon

XP_018736858.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23364-27506:1:exon

AWJ20_1970
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PDE2
locus tag: AWJ20_1970
so part of: sequence
location: <31192..>33165
location: region:31192-33165:1
so has part: feature:31192-33165:1:exon
subclass of: SO_0000010

30033830
type: Gene
SIO_000068: ncbigene

position:31192:1
position: 31192
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:33165:1
position: 33165
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31192-33165:1:exon

AWJ20_1970
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PDE2
locus tag: AWJ20_1970
product: 3',5'-cyclic-nucleotide phosphodiesterase PDE2
transcript id: XM_018878890.1
SIO_010081: AWJ20_1970
subclass of: SO_0000673
so part of: AWJ20_1970
location: <31192..>33165
location: region:31192-33165:1
so has part: feature:31192-33165:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:31192-33165:1:exon

AWJ20_1970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PDE2
locus tag: AWJ20_1970
inference: similar to AA sequence:KEGG_Orthology:K01120
note: High-affinity cyclic AMP phosphodiesterase; component of the cAMP-dependent protein kinase signaling system, protects the cell from extracellular cAMP, contains readthrough motif surrounding termination codon; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004115 - 3',5'-cyclic-AMP phosphodiesterase activity [Evidence IDA] [PMID 3025832]; GO_function: GO:0004114 - 3',5'-cyclic-nucleotide phosphodiesterase activity [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008081 - phosphoric diester hydrolase activity [Evidence IEA]; GO_process: GO:0019933 - cAMP-mediated signaling [Evidence IMP] [PMID 8391474]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA,IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]
codon start: 1
product: 3',5'-cyclic-nucleotide phosphodiesterase PDE2
translation: MLGPAGKPIEPPSSPTNPLRKFTGKVAQVASQLSQKSMPRLRPSTSTRHLNNSTSTRETTTSGSISTSTYREASSVTNTNRNSKLHNPSMASKTSSPALSVNSFSSTSAPSLVLYWDVRVPKDNQIYDRFSKLLDNDVSRSKYPEVYSNISLLLEQFPQVHVLNTFQSLAQQLFAYRECAFTTLFYVTTSDLVYVNDDQTIKFVSAQYAHIPGAFIVLSDVTSLWASFARLGAMDISWASIESVKATKPAYWASIIGHARQDQFESRTRQLKTMLGLEQEVESVASANLITKFSFSSKHVLDEFSPSLTSLVNEEKQPLIQELIGSWDFYAHDLKYDELLAATYMMIKHALSSPGLEHYCIPDRKLISLLLVVRNCYHATNPYHNFRHAVDVVQATFFFLISIGVFKPVGKAASVEKSTNPLTAVDGLNLLVAALGHDVGHPGVTNAFLVSSNAPLAKIYNDRSVLESYHSAAFNQILKEYWPQMVQDSNARTMITESVLATDMAVHFDYMKKAEEKGKQDSLYDENINENELQKLRLLLGCLILKCADISNVSRKLDISSKWGTLLVAEFGGLNDLEIDLGLKQAPSQSNEPVTAGLRNKLLGEGQIFFIETYALPLFTAVSRMMPELQFATRQIEENVKIWKSRVGDGDYDNDHK
SIO_010081: AWJ20_1970
subclass of: SO_0000673
so part of: AWJ20_1970
location: 31192..33165
location: region:31192-33165:1
so has part: feature:31192-33165:1:exon

XP_018736859.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31192-33165:1:exon

AWJ20_1971
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: VTS1
locus tag: AWJ20_1971
so part of: sequence
location: complement(<33355..>35247)
location: region:33355-35247:-1
so has part: feature:33355-35247:-1:exon
subclass of: SO_0000010

30033831
type: Gene
SIO_000068: ncbigene

position:33355:-1
position: 33355
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:35247:-1
position: 35247
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33355-35247:-1:exon

AWJ20_1971
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: VTS1
locus tag: AWJ20_1971
product: Vts1p
transcript id: XM_018878891.1
SIO_010081: AWJ20_1971
subclass of: SO_0000673
so part of: AWJ20_1971
location: complement(<33355..>35247)
location: region:33355-35247:-1
so has part: feature:33355-35247:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:33355-35247:-1:exon

AWJ20_1971
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: VTS1
locus tag: AWJ20_1971
note: Flap-structured DNA-binding and RNA-binding protein; stimulates deadenylation-dependent mRNA degradation mediated by the CCR4-NOT deadenylase complex; member of the Smaug (Smg) family of post-transcriptional regulators which bind RNA through a conserved sterile alpha motif (SAM) domain that interacts with Smg recognition element (SREs) containing transcripts; stimulates Dna2p endonuclease activity; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 18469165]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11445562]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 20007605]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 12858164]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 16429156]; GO_function: GO:0070336 - flap-structured DNA binding [Evidence IDA] [PMID 20007605]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0000956 - nuclear-transcribed mRNA catabolic process [Evidence IMP] [PMID 12858164]; GO_process: GO:0000956 - nuclear-transcribed mRNA catabolic process [Evidence IMP] [PMID 16429156]; GO_process: GO:0000289 - nuclear-transcribed mRNA poly(A) tail shortening [Evidence IMP,IPI] [PMID 18469165]; GO_process: GO:0032079 - positive regulation of endodeoxyribonuclease activity [Evidence IDA,IPI] [PMID 20007605]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Vts1p
translation: MEDFSYASNPGNNNMSSRIQQPSHRMHQQVNSSSSLPPFDSPLAARTRPTSEIFLQTPLKQFGTSNGMNTIGPGGVSLGPGSGTNSALANHINPDDQMMDLAAEKWLADLELYQKTLEEMAEVSLDKNFKEELNDIERWFEVLSVGERTAALYALLQQTTPVQIRFFITVLQKIANRDPISAVLSPTNLEREPLQSQLNEAITRQQQGQQSNSSTSPSNKNISVSNGSTSSKGQSQHHLHQPQPHSAGFTQNYPHLHSPIPSGVGTSPFMTPPPKHDLYNNSFLGSFSKPIAPPISPWAAQEINRPKSADAPTGQNSQLHSLIQQQQLQGLQGFRQFGGAGSRLSNLSVTSNSSDTPSVGGGNSNTYKHNKSLSVLDDSLSSYLPDSSTNWSSIVNTPVSHIGTPQSKLNSEIINSTAMKMAALSTVNNRVVLDSDVKKFRRRGSLISNEDQKYIDRELQNLHIQANKHTSTNSPFASTPSPASWTLGISNNTTSTTNNTNNHNIGNGSPMPSNKHNISTSPQDRKSGLSKVSYGHQDSPSRDMTTSPAPLGTPKKDAPVDIELLQDIGAWLRSLRLHKYTDNLSDLNWKDLVELTDADLEKRGVNALGARRKMLKVFEQVKEAQQVGSI
SIO_010081: AWJ20_1971
subclass of: SO_0000673
so part of: AWJ20_1971
location: complement(33355..35247)
location: region:33355-35247:-1
so has part: feature:33355-35247:-1:exon

XP_018736860.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33355-35247:-1:exon

AWJ20_1972
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RTT106
locus tag: AWJ20_1972
so part of: sequence
location: complement(<37188..>37670)
location: region:37188-37670:-1
so has part: feature:37188-37670:-1:exon
subclass of: SO_0000010

30033832
type: Gene
SIO_000068: ncbigene

position:37188:-1
position: 37188
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:37670:-1
position: 37670
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37188-37670:-1:exon

AWJ20_1972
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RTT106
locus tag: AWJ20_1972
product: Rtt106p
transcript id: XM_018878892.1
SIO_010081: AWJ20_1972
subclass of: SO_0000673
so part of: AWJ20_1972
location: complement(<37188..>37670)
location: region:37188-37670:-1
so has part: feature:37188-37670:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:37188-37670:-1:exon

AWJ20_1972
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RTT106
locus tag: AWJ20_1972
note: Histone chaperone; involved in regulation of chromatin structure in both transcribed and silenced chromosomal regions; affects transcriptional elongation; has a role in regulation of Ty1 transposition; interacts physically and functionally with Chromatin Assembly Factor-1 (CAF-1); GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA,IMP] [PMID 20007951]; GO_function: GO:0042393 - histone binding [Evidence IDA,IPI] [PMID 16157874]; GO_function: GO:0042393 - histone binding [Evidence IDA] [PMID 18662540]; GO_function: GO:0042393 - histone binding [Evidence IDA,IMP] [PMID 20007951]; GO_process: GO:0006335 - DNA replication-dependent nucleosome assembly [Evidence IGI] [PMID 18662540]; GO_process: GO:0006336 - DNA replication-independent nucleosome assembly [Evidence IMP] [PMID 18708354]; GO_process: GO:0070869 - heterochromatin assembly involved in chromatin silencing [Evidence IGI,IMP] [PMID 17410207]; GO_process: GO:0070869 - heterochromatin assembly involved in chromatin silencing [Evidence IGI] [PMID 20007951]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 19683497]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 18708354]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0032196 - transposition [Evidence IEA]
codon start: 1
product: Rtt106p
translation: MLLFPVDKIAAISYSSITRLTFNLNIKLTEPIEGIQDYEFSMIDHNDYDEINDYVVRNSLENQSMSEARRAKQATNKPEFSNELEKVIAEDNGAGDDDEDEEQDEDYESGSDSEEAASESESDDDDQDNDEDDSDEEEEEEEEDDDEGGQESGQEQDDAE
SIO_010081: AWJ20_1972
subclass of: SO_0000673
so part of: AWJ20_1972
location: complement(37188..37670)
location: region:37188-37670:-1
so has part: feature:37188-37670:-1:exon

XP_018736861.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:37188-37670:-1:exon

AWJ20_1973
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: GLC7
locus tag: AWJ20_1973
so part of: sequence
location: complement(<41941..>42411)
location: region:41941-42411:-1
so has part: feature:41941-42411:-1:exon
subclass of: SO_0000010

30033833
type: Gene
SIO_000068: ncbigene

position:41941:-1
position: 41941
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:42411:-1
position: 42411
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41941-42411:-1:exon

AWJ20_1973
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: GLC7
locus tag: AWJ20_1973
product: type 1 serine/threonine-protein phosphatase catalytic subunit GLC7
transcript id: XM_018878893.1
SIO_010081: AWJ20_1973
subclass of: SO_0000673
so part of: AWJ20_1973
location: complement(<41941..>42411)
location: region:41941-42411:-1
so has part: feature:41941-42411:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:41941-42411:-1:exon

AWJ20_1973
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: GLC7
locus tag: AWJ20_1973
inference: similar to AA sequence:KEGG_Orthology:K06269
note: Type 1 serine/threonine protein phosphatase catalytic subunit; cleavage and polyadenylation factor (CPF) component; involved in various processes including glycogen metabolism, sporulation, mitosis; accumulates at mating projections by interaction with Afr1p; interacts with many regulatory subunits; involved in regulation of the nucleocytoplasmic shuttling of Hxk2p; import into nucleus is inhibited during spindle assembly checkpoint arrest; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11412094]; GO_component: GO:0000778 - condensed nuclear chromosome kinetochore [Evidence IDA] [PMID 19948764]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IDA] [PMID 12819204]; GO_component: GO:0001400 - mating projection base [Evidence IDA] [PMID 10747092]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11412094]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23418575]; GO_component: GO:0000164 - protein phosphatase type 1 complex [Evidence IDA] [PMID 8289829]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 10747092]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA] [PMID 1660885]; GO_process: GO:0000077 - DNA damage checkpoint [Evidence IMP] [PMID 19884341]; GO_process: GO:0000076 - DNA replication checkpoint [Evidence IGI,IMP] [PMID 19884341]; GO_process: GO:0030437 - ascospore formation [Evidence IMP] [PMID 9584086]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0007114 - cell budding [Evidence IMP] [PMID 10639337]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process:…
codon start: 1
product: type 1 serine/threonine-protein phosphatase catalytic subunit GLC7
translation: MHGGLSPDLNSMEQIRRVMRPTDIPDIGLLCDLLWSDPDKDITGWSENDRGVSFTFGPDVVSRFLSKHDMDLICRAHQVVEDGYEFFSKRQLVTLFSAPNYCGEFDNAGAMMGVDESLLCSFQILKPAEKKKKYGYTSVGTSRPVTPPRKQKRPTK
SIO_010081: AWJ20_1973
subclass of: SO_0000673
so part of: AWJ20_1973
location: complement(41941..42411)
location: region:41941-42411:-1
so has part: feature:41941-42411:-1:exon

XP_018736862.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:41941-42411:-1:exon

AWJ20_1974
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: GLC7
locus tag: AWJ20_1974
so part of: sequence
location: complement(<44647..>45621)
location: region:44647-45621:-1
so has part: feature:44647-45621:-1:exon
subclass of: SO_0000010

30033834
type: Gene
SIO_000068: ncbigene

position:44647:-1
position: 44647
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:45621:-1
position: 45621
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44647-45621:-1:exon

AWJ20_1974
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: GLC7
locus tag: AWJ20_1974
product: type 1 serine/threonine-protein phosphatase catalytic subunit GLC7
transcript id: XM_018878894.1
SIO_010081: AWJ20_1974
subclass of: SO_0000673
so part of: AWJ20_1974
location: complement(<44647..>45621)
location: region:44647-45621:-1
so has part: feature:44647-45621:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:44647-45621:-1:exon

AWJ20_1974
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: GLC7
locus tag: AWJ20_1974
inference: similar to AA sequence:KEGG_Orthology:K06269
note: Type 1 serine/threonine protein phosphatase catalytic subunit; cleavage and polyadenylation factor (CPF) component; involved in various processes including glycogen metabolism, sporulation, mitosis; accumulates at mating projections by interaction with Afr1p; interacts with many regulatory subunits; involved in regulation of the nucleocytoplasmic shuttling of Hxk2p; import into nucleus is inhibited during spindle assembly checkpoint arrest; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11412094]; GO_component: GO:0000778 - condensed nuclear chromosome kinetochore [Evidence IDA] [PMID 19948764]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IDA] [PMID 12819204]; GO_component: GO:0001400 - mating projection base [Evidence IDA] [PMID 10747092]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11412094]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23418575]; GO_component: GO:0000164 - protein phosphatase type 1 complex [Evidence IDA] [PMID 8289829]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 10747092]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA] [PMID 1660885]; GO_process: GO:0000077 - DNA damage checkpoint [Evidence IMP] [PMID 19884341]; GO_process: GO:0000076 - DNA replication checkpoint [Evidence IGI,IMP] [PMID 19884341]; GO_process: GO:0030437 - ascospore formation [Evidence IMP] [PMID 9584086]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0007114 - cell budding [Evidence IMP] [PMID 10639337]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process:…
codon start: 1
product: type 1 serine/threonine-protein phosphatase catalytic subunit GLC7
translation: MVEPIEEFDVDTIIDKLLTVRTSRPGRMVNLLSTEIDYLCKKSREIFIQQSILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSIETICLLFAYKIKYPENFFILRGNHEAASTNRIYGFYDECKRRYNIRTWKTFTDVFNCLPVAAVIDEKIFAMHGGLSPDIHSMDQIRRIMRPTDIPDDGLLCDLLWADPDKDVTGWGENDRGVSYTFGVDVVKKFLEKHDLELICRAHQVVEDGYEFFAKRQLVTIFSAPNYCGEFDNAGAMMSLDENLTCSFQILRPAEKGLSRGKGPFEGRRKKKSRDSDW
SIO_010081: AWJ20_1974
subclass of: SO_0000673
so part of: AWJ20_1974
location: complement(44647..45621)
location: region:44647-45621:-1
so has part: feature:44647-45621:-1:exon

XP_018736863.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:44647-45621:-1:exon

AWJ20_1975
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: VHR1
locus tag: AWJ20_1975
so part of: sequence
location: complement(<46504..>48150)
location: region:46504-48150:-1
so has part: feature:46504-48150:-1:exon
subclass of: SO_0000010

30033835
type: Gene
SIO_000068: ncbigene

position:46504:-1
position: 46504
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:48150:-1
position: 48150
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46504-48150:-1:exon

AWJ20_1975
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: VHR1
locus tag: AWJ20_1975
product: Vhr1p
transcript id: XM_018878895.1
SIO_010081: AWJ20_1975
subclass of: SO_0000673
so part of: AWJ20_1975
location: complement(<46504..>48150)
location: region:46504-48150:-1
so has part: feature:46504-48150:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:46504-48150:-1:exon

AWJ20_1975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: VHR1
locus tag: AWJ20_1975
note: Transcriptional activator; required for the vitamin H-responsive element (VHRE) mediated induction of VHT1 (Vitamin H transporter) and BIO5 (biotin biosynthesis intermediate transporter) in response to low biotin concentrations; VHR1 has a paralog, VHR2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16533810]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding [Evidence IDA] [PMID 16533810]; GO_function: GO:0001133 - sequence-specific transcription regulatory region DNA binding RNA polymerase II transcription factor recruiting transcription factor activity [Evidence IDA,IMP] [PMID 21278159]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 16533810]; GO_process: GO:0061420 - regulation of transcription from RNA polymerase II promoter in response to biotin starvation [Evidence IMP] [PMID 16533810]; GO_process: GO:0061420 - regulation of transcription from RNA polymerase II promoter in response to biotin starvation [Evidence IMP] [PMID 21278159]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]
codon start: 1
product: Vhr1p
translation: MNTPDSHQKVEHSLKEPDGNASDNDHMVQLGVGITQAIRSRLNFTDDYKWKRFSARRLELIDELELSSRKASEQDEKISLVANRLREEYGFPETTLNDFHRLVRAGIQSVRRNRKRSYLKGTTGPSNPTGNTSSTASGTITPNTSTPTSGHSPILSSDHIHMPQTKQSYTKLTAELASSNSIQDKRVGLQFENISPDRFKFSNQADSDDESSILPLKRPRAVRPSPQNNDRISITSLISPSPPVPTHPLTSDQTVLPPVSSLSLASPGPREDLFILALERLQQFTIKLSSHMPVNSNTEFLGQSVMSTAAAYAVERRLPNHESSETVRSYVLSFTVTSAIVRALGLHSFSLLKITLASCCREYGFDTIIHSLSSFYYEMFNIDPTFDLTKESSYDKMASILATVTSSRAIPTPVLPVNTGLLSAPGSTITSLTSLSGTAYKSQAPVVRPVTLRFGNQKLEFTYSPARVSSPPTVSEVLDNGRNAFSINKEQPLQIENRNRPGKILLTDADVADTFTEARVDIELRVVQRDRPLASSAAADRPKFQELL
SIO_010081: AWJ20_1975
subclass of: SO_0000673
so part of: AWJ20_1975
location: complement(46504..48150)
location: region:46504-48150:-1
so has part: feature:46504-48150:-1:exon

XP_018736864.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:46504-48150:-1:exon

AWJ20_1976
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ENV9
locus tag: AWJ20_1976
so part of: sequence
location: <49106..>50077
location: region:49106-50077:1
so has part: feature:49106-50077:1:exon
subclass of: SO_0000010

30033836
type: Gene
SIO_000068: ncbigene

position:49106:1
position: 49106
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:50077:1
position: 50077
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49106-50077:1:exon

AWJ20_1976
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ENV9
locus tag: AWJ20_1976
product: Env9p
transcript id: XM_018878896.1
SIO_010081: AWJ20_1976
subclass of: SO_0000673
so part of: AWJ20_1976
location: <49106..>50077
location: region:49106-50077:1
so has part: feature:49106-50077:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:49106-50077:1:exon

AWJ20_1976
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ENV9
locus tag: AWJ20_1976
note: Protein proposed to be involved in vacuolar functions; mutant shows defect in CPY processing and defects in vacuolar morphology; has similarity to oxidoreductases, found in lipid particles; required for replication of Brome mosaic virus in S. cerevisiae, a model system for studying replication of positive-strand RNA viruses in their natural hosts; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence ISS] [PMID 8972580]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006624 - vacuolar protein processing [Evidence IMP] [PMID 21912603]; GO_process: GO:0007033 - vacuole organization [Evidence IMP] [PMID 21912603]
codon start: 1
product: Env9p
translation: MTFNHETTSEQIAEAFGSQIKGKVVLVTGATWGGIGADNARVIAASGAKLVIITGRSQAKLDETIENIQKQTPNAIVRGLILDLSSFKSVRKAAEEVNAYAEDIDVLINNAGVMACPYSKTEDGFEMQFGTNHLGHFLFTNLILKKLLATPHPRVVNVSSLGHGLAPIIFGDIGFSDGAKYDKNHAYGQSKTANILFTRELHRRYNKEHGLVAFSIHPGAILDTNLARHMDINNDYANIEVPKDYWGTGDFAQNMSTLKMKNVSQGGATTLAAAFNPEIASQSGAYLDDCEIHEEHCRNHAKQSNDAFKLWTVSEELVGQKFD
SIO_010081: AWJ20_1976
subclass of: SO_0000673
so part of: AWJ20_1976
location: 49106..50077
location: region:49106-50077:1
so has part: feature:49106-50077:1:exon

XP_018736865.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:49106-50077:1:exon

AWJ20_1977
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: DSF2
locus tag: AWJ20_1977
so part of: sequence
location: <51489..>53402
location: region:51489-53402:1
so has part: feature:51489-53402:1:exon
subclass of: SO_0000010

30033837
type: Gene
SIO_000068: ncbigene

position:51489:1
position: 51489
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:53402:1
position: 53402
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:51489-53402:1:exon

AWJ20_1977
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: DSF2
locus tag: AWJ20_1977
product: Dsf2p
transcript id: XM_018878897.1
SIO_010081: AWJ20_1977
subclass of: SO_0000673
so part of: AWJ20_1977
location: <51489..>53402
location: region:51489-53402:1
so has part: feature:51489-53402:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:51489-53402:1:exon

AWJ20_1977
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: DSF2
locus tag: AWJ20_1977
note: Deletion suppressor of mpt5 mutation; relocalizes from bud neck to cytoplasm upon DNA replication stress; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]
codon start: 1
product: Dsf2p
translation: MSLQDQQISGNTFTPNLSPLDLLEQQSRQLAHDLHSSKPTDRHKRNSADTIKGVSEPNNPAPERGHVVNRSIDTHSSRLSQNGDTMTEQVPDQVSQQQSPSRVRHKHMASDTSTISTASSYQPNSHSQYATPDSIASNNIKSYNAPLRPIQNFNQDTNQEWTPRSRASMSSLSSFGGGGGILDSFRLSALPSFDRQSVIDTEPSSDNLSDISRAGSLQTIRSVSGNVRTSFDPRMHIRTVDSGRDANPKNDIEDSESTSPDFGKTHAETNGEASSERPQLVSNKTFSHNIPSRPVILSAKSYHQSASTSMSPDSTVSTPPSSKSRPVSDASSYYSSTSRFSQSSIKAPAALFQQFSHPTTTNVAHKSRPTGYFFPEPTSRPAVGKHQPQPAKAGNGGLLIPPSIRKSPPPIQTRKTSNDSTNSRNLIPQSLLEKPFADMTVEDHVTIGIAYHESGDLREASYHWQHAAFKGDHTAMLLYGLSLRHGWGMRQNPTEAVQWLRKAMESTIAEGMFKDGDFHKSNVSKEGSEDSGKVKKAHIGLALYELGMSYLHSWGIEKDETMALKSFELAGQFGDADALCEAAALYMHNGPKGRKKDLMKAAKLYRKAGELGANMVGQSWVYKDKYMEDSKKDKKKK
SIO_010081: AWJ20_1977
subclass of: SO_0000673
so part of: AWJ20_1977
location: 51489..53402
location: region:51489-53402:1
so has part: feature:51489-53402:1:exon

XP_018736866.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:51489-53402:1:exon

AWJ20_1978
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MZM1
locus tag: AWJ20_1978
so part of: sequence
location: complement(<53723..>53989)
location: region:53723-53989:-1
so has part: feature:53723-53989:-1:exon
subclass of: SO_0000010

30033838
type: Gene
SIO_000068: ncbigene

position:53723:-1
position: 53723
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:53989:-1
position: 53989
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:53723-53989:-1:exon

AWJ20_1978
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MZM1
locus tag: AWJ20_1978
product: Mzm1p
transcript id: XM_018878898.1
SIO_010081: AWJ20_1978
subclass of: SO_0000673
so part of: AWJ20_1978
location: complement(<53723..>53989)
location: region:53723-53989:-1
so has part: feature:53723-53989:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:53723-53989:-1:exon

AWJ20_1978
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MZM1
locus tag: AWJ20_1978
inference: similar to AA sequence:KEGG_Orthology:K18170
note: Protein required for assembly of the cytochrome bc(1) complex; acts as a chaperone for Rip1p and facilitates its insertion into the complex at a late stage of assembly; localized to the mitochondrial matrix; null mutant exhibits a respiratory growth defect and reduced mitochondrial zinc levels, which is characteristic of mutations affecting bc(1) complex assembly; member of the LYR protein family; human LYRM7 is a functional ortholog; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 20404342]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17054397]; GO_function: GO:0044183 - protein binding involved in protein folding [Evidence IMP,IPI] [PMID 22927643]; GO_process: GO:0034551 - mitochondrial respiratory chain complex III assembly [Evidence IMP] [PMID 21807901]
codon start: 1
product: Mzm1p
translation: MSTTNRTAALSAYRYVLRATRVAFNSDPVALNGSRSQIRAGFKADRNVTDEAEIKEKIQYIKDIGLILRTNVVQAQKKSEDDNNFGEF
SIO_010081: AWJ20_1978
subclass of: SO_0000673
so part of: AWJ20_1978
location: complement(53723..53989)
location: region:53723-53989:-1
so has part: feature:53723-53989:-1:exon

XP_018736867.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:53723-53989:-1:exon

AWJ20_1979
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_1979
so part of: sequence
location: <54568..>56172
location: region:54568-56172:1
so has part: feature:54568-56172:1:exon
subclass of: SO_0000010

30033839
type: Gene
SIO_000068: ncbigene

position:54568:1
position: 54568
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:56172:1
position: 56172
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:54568-56172:1:exon

AWJ20_1979
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_1979
product: hypothetical protein
transcript id: XM_018878899.1
SIO_010081: AWJ20_1979
subclass of: SO_0000673
so part of: AWJ20_1979
location: <54568..>56172
location: region:54568-56172:1
so has part: feature:54568-56172:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:54568-56172:1:exon

AWJ20_1979
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_1979
codon start: 1
product: hypothetical protein
translation: MPPRRKRGAATKEVTNGDSSPRTTRASAAKKAKETTTDSKPKRSSSPQNSELASTVEPKVKSKGKNTKQPVVEPSEEEDEAISHTPNQEEPEENKENENVGIKSKLKKVQSPPRNGLLTSALGISLENTPVTRSNKRQHDGEDTDDSPSIVSRSKKHKNSILSNGEANTSLSTLSQPPKKAVKKPWRTGTATAANSAETASKEGGPTGTIDEDTSSKSKPNTTEKPLLKDKSSNPHIISKVTNGISATTVKSSTVTKTDKVALSNPRLISNSSVTGLISPSKPAHPGNLASSISSHGRLSPTKSHPRVAVGLSPSKHGASDSTLSSALTSFTVNAASELAVKFEKLRDLRETKAEELLNEFKLAAEARFQASDELIRELRLHEEKNQHSQDQELVDANIALQNLQQNVANLNSDLEAANEEISLLKAKLEAKENQQSQNMSNLALGICSDLSGLVILKVLNEEDEYTYECVQSGRNGVFRYNLSVAKSDSKEESHDITFTPLLTEKDEHLTSLLPDYFTEPLSFTREAVSILWC
SIO_010081: AWJ20_1979
subclass of: SO_0000673
so part of: AWJ20_1979
location: 54568..56172
location: region:54568-56172:1
so has part: feature:54568-56172:1:exon

XP_018736868.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:54568-56172:1:exon

AWJ20_1980
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MEF2
locus tag: AWJ20_1980
so part of: sequence
location: complement(<57205..>59694)
location: region:57205-59694:-1
so has part: feature:57205-59694:-1:exon
subclass of: SO_0000010

30033841
type: Gene
SIO_000068: ncbigene

position:57205:-1
position: 57205
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:59694:-1
position: 59694
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57205-59694:-1:exon

AWJ20_1980
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MEF2
locus tag: AWJ20_1980
product: Mef2p
transcript id: XM_018878901.1
SIO_010081: AWJ20_1980
subclass of: SO_0000673
so part of: AWJ20_1980
location: complement(<57205..>59694)
location: region:57205-59694:-1
so has part: feature:57205-59694:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:57205-59694:-1:exon

AWJ20_1980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MEF2
locus tag: AWJ20_1980
inference: similar to AA sequence:KEGG_Orthology:K02355
note: Mitochondrial elongation factor involved in translational elongation; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence ISS] [PMID 19716793]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IMP] [PMID 21414316]; GO_process: GO:0032543 - mitochondrial translation [Evidence ISS] [PMID 19716793]; GO_process: GO:0051881 - regulation of mitochondrial membrane potential [Evidence IMP] [PMID 21414316]; GO_process: GO:0032790 - ribosome disassembly [Evidence ISS] [PMID 19716793]; GO_process: GO:0006412 - translation [Evidence IEA]
codon start: 1
product: Mef2p
translation: MGVGVRLNCFSILPKFVLAKSSIYKYATAVPHGTRFYSVSRPCFSESSAVRNIGIIAHIDAGKTTTTERMLYYSGLTSHIGDVDQGDTVTDYLQAERERGITITSAAVTLDWSGHKINLIDTPGHADFTFEVIRSIRVLDGAVTVLDGVAGVEAQTEKVWRQASDRGIPKIVFINKMDRPGAGFGRTVREVVAKLNTRVGITNFPYFGQMDAGHEGRFQGVVDVVDKRLILWDEGSDGKSVKVSELEDGSELSQECERIRTSLIETLCECEGNDDLVEEVLEISDYMAVPPSSIRKALRNSTLREDISPVLCGASFRNIGVQPLMEAVVNYLPSPEERKAPDAISKVPVSKGKHAAQSIKSENVTLNVNDPKLTCALAFKVVNDPIRGILVYVRVYSGTLQTGSVILNTTNGKKERVSKLLQMQADMPLDISKIEKGNIGVIVGSKEIRTGDTLVAHGLKKDGITTLLKRDLGLHLHPIDVPPPVFFASITPKSISDTRNMEEALDILLREDPSLRLSYDDDSGQTLLSGMGELHLEIARDRLINDLKAKVKIGPIMISYKESIQASSKIIEKSYSEGGNEDMSVKVGLMVEPVYEDIELGDLAEKIDPHDNHYVIFPSYTNHPHLSQEEIYEAIKIGIIPALATGGKLARLPLHSISVKITNLEIPEDCTSTASISSAVRLASQEALRGFIKSDYVIMEPKMDVRVVVNEEDIGNVVNDISSTRRGHVISLNEDDAENSSDQTSISNHFKELAASVYVPPDYTMYMSKHGDRATSQQSLIKAKIPLRKMVGYLTSLRSMTQGRATFLMSFDKYEIAPPDAIDEIVDSL
SIO_010081: AWJ20_1980
subclass of: SO_0000673
so part of: AWJ20_1980
location: complement(57205..59694)
location: region:57205-59694:-1
so has part: feature:57205-59694:-1:exon

XP_018736869.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:57205-59694:-1:exon

AWJ20_1981
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_1981
so part of: sequence
location: <60189..>61094
location: region:60189-61094:1
so has part: feature:60189-61094:1:exon
subclass of: SO_0000010

30033842
type: Gene
SIO_000068: ncbigene

position:60189:1
position: 60189
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:61094:1
position: 61094
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:60189-61094:1:exon

AWJ20_1981
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_1981
product: pre-mRNA splicing factor SLU7
transcript id: XM_018878902.1
SIO_010081: AWJ20_1981
subclass of: SO_0000673
so part of: AWJ20_1981
location: <60189..>61094
location: region:60189-61094:1
so has part: feature:60189-61094:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:60189-61094:1:exon

AWJ20_1981
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_1981
inference: similar to AA sequence:KEGG_Orthology:K12819
codon start: 1
product: pre-mRNA splicing factor SLU7
translation: MERPRKIGAKFSGKDIVADDVLQDITTTWDSKRDRWNGYDAHEYKKVVERFEEKERQKKADGELEDDDDDELKKTQDGQLGEKVRSLRERGDKAAYLEDLSEDAVEFNPKTRTMRTEGGTINDNGQFERKLSDSALEYENLRQKAEGLSEQGMAIHMEASPTEAVLKLKQLQQEKESQKHKLKQELLEKYGGAEHLAPRPKEVEIVPLEASTVTKSGEDKPGLKPSSIKSRYPEDIYPGNHSSVWGSYWINGKWGFACCHSLVKHSYCLGEKGIEINDSKEEVPQVSTEHPNKRSYDEVSQ
SIO_010081: AWJ20_1981
subclass of: SO_0000673
so part of: AWJ20_1981
location: 60189..61094
location: region:60189-61094:1
so has part: feature:60189-61094:1:exon

XP_018736870.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:60189-61094:1:exon

AWJ20_1982
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_1982
so part of: sequence
location: <63464..>65449
location: region:63464-65449:1
so has part: feature:63464-65449:1:exon
subclass of: SO_0000010

30033843
type: Gene
SIO_000068: ncbigene

position:63464:1
position: 63464
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:65449:1
position: 65449
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:63464-65449:1:exon

AWJ20_1982
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_1982
product: hypothetical protein
transcript id: XM_018878903.1
SIO_010081: AWJ20_1982
subclass of: SO_0000673
so part of: AWJ20_1982
location: <63464..>65449
location: region:63464-65449:1
so has part: feature:63464-65449:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:63464-65449:1:exon

AWJ20_1982
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_1982
codon start: 1
product: hypothetical protein
translation: MAPFWKKLNSPQSFANHDFTSNFLELALLYDVLRNAKFTTVRKRMELPHDSLCKYDSDMVSAVTQSSIFLVHSDNVMEVKVALLKELMLVSSDHGTHNSLAGSASTSANTTELDTTEVVYLDTPKLEYAQTGKEPAQIRKVNDSSSVLCSPTGGLRHFASSNLTPEELDLILNEKAAEIDFNQLDGARKLAIGWVQRKQAKPLSKVTYSRNRFSYVNDDDAASVIGVNVNNSTETNIWATMDSNIKLEKTTKTELSSAKTFPHSILEIRWKGTSKPQWLSDIEKSHLVYPMREGFSLYAYSVVSFYSDQLQSVPSWLEIIEDNVEIRKVPSVAPVRRSMNSSANLAGANRTDKSVSISTPSILLNDSNAQIHDYDSAKEQEGLSRKSSMTVVEDRENRPQMLSRVSSFYNPASRQRHKLQSQPSESKLAVRYWNEFDDPEDGEDLGVFVINDEDPSGSYQDKLFSEANIDALVRISDKFLQSIGWFTSKITGSRDGYEALREGNYRRGSSSESDPDEEDEEEDDFDEEASVGRYSPRIKPRTSSDDSDDFAYRSFGDRNNSVAAQRRNSVLTFLYSMCLSLAAFIIMTLFSVTLLQDISEISLGTYVFMISGFIFALAISMLGLSLYLLCEAPPWWQQTIVFSSFFSIVCFGVGGIAWILT
SIO_010081: AWJ20_1982
subclass of: SO_0000673
so part of: AWJ20_1982
location: 63464..65449
location: region:63464-65449:1
so has part: feature:63464-65449:1:exon

XP_018736871.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:63464-65449:1:exon

AWJ20_1983
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ARP6
locus tag: AWJ20_1983
so part of: sequence
location: complement(<65534..>66802)
location: region:65534-66802:-1
so has part: feature:65534-66802:-1:exon
subclass of: SO_0000010

30033844
type: Gene
SIO_000068: ncbigene

position:65534:-1
position: 65534
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:66802:-1
position: 66802
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:65534-66802:-1:exon

AWJ20_1983
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ARP6
locus tag: AWJ20_1983
product: Arp6p
transcript id: XM_018878904.1
SIO_010081: AWJ20_1983
subclass of: SO_0000673
so part of: AWJ20_1983
location: complement(<65534..>66802)
location: region:65534-66802:-1
so has part: feature:65534-66802:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:65534-66802:-1:exon

AWJ20_1983
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ARP6
locus tag: AWJ20_1983
inference: similar to AA sequence:KEGG_Orthology:K11662
note: Actin-related protein that binds nucleosomes; a component of the SWR1 complex, which exchanges histone variant H2AZ (Htz1p) for chromatin-bound histone H2A; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14645854]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14690608]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 16299513]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11011149]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0031491 - nucleosome binding [Evidence IMP] [PMID 16299513]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IDA] [PMID 14645854]; GO_process: GO:0006338 - chromatin remodeling [Evidence IGI,IMP] [PMID 14690608]; GO_process: GO:0043486 - histone exchange [Evidence IMP] [PMID 16299513]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]
codon start: 1
product: Arp6p
translation: MSVLVIDNGAYELKIGYATDDKNPAHFRVSNSITRSKDRRTYVGNEIENCRDYAGLTYRRPHERGQLVNWETQKAIWDNQFYGKTSKLVGMNGGKPVDPSETSLILTEMPYSLPALSSNMDQIVFEEYGFDSYYRCTPGSLVPWNDIRELYNDTSSRSSPVSECALVIDSGFSSTHVLPVVLGEVYWPAAKRINIGGKHLTNYLKETVSFRYYNMMEETFLMNVIKERVCFVSLKYQLDLEEAHINKRKSLLRIDYALPDYRTSKLGHIVKGATSSNDSNQVLTLTNERFTIPEALFRPSDLNLDQAGIPETAINCVKLMPEEIQSMLLSNVVLVGGNAVLPGYKERIREELQSFSPQGVNLRVGMPVDPISYAWQGGCRLGSQKDMLSKAYVTKADYMEHGVNLCLSRFGIKKMDNSIAMD
SIO_010081: AWJ20_1983
subclass of: SO_0000673
so part of: AWJ20_1983
location: complement(65534..66802)
location: region:65534-66802:-1
so has part: feature:65534-66802:-1:exon

XP_018736872.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:65534-66802:-1:exon

AWJ20_1984
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_1984
so part of: sequence
location: <67251..>68048
location: region:67251-68048:1
so has part: feature:67251-68048:1:exon
subclass of: SO_0000010

30033845
type: Gene
SIO_000068: ncbigene

position:67251:1
position: 67251
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:68048:1
position: 68048
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:67251-68048:1:exon

AWJ20_1984
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_1984
product: hypothetical protein
transcript id: XM_018878905.1
SIO_010081: AWJ20_1984
subclass of: SO_0000673
so part of: AWJ20_1984
location: <67251..>68048
location: region:67251-68048:1
so has part: feature:67251-68048:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:67251-68048:1:exon

AWJ20_1984
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_1984
codon start: 1
product: hypothetical protein
translation: MPRTRSLGQAGTAVPRRPTRVVEDDSDEDDSNPGMYSKLSTDTMVPLVSSTPMRPGAVQVAHLEPVSRLSTIEDVDSSKENEFSPTDALGKMPPVTPARKQNRVSFAPIPSGKPTNGSAPPTLAPSHQALARLGNAGHPLTELDLNNRLPPPPQTPLAYPATPSEDLDSTIEAVRKVSLDSTSPTFRSPSKIANYLEQSSETPHQRLTIHKLVLTNFKSYAGRQEIGPFHSVSTMKKSTNHSCTNFTTVFFCSSGPQRIGKIQRY
SIO_010081: AWJ20_1984
subclass of: SO_0000673
so part of: AWJ20_1984
location: 67251..68048
location: region:67251-68048:1
so has part: feature:67251-68048:1:exon

XP_018736873.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:67251-68048:1:exon

AWJ20_1985
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SMC4
locus tag: AWJ20_1985
so part of: sequence
location: <68086..>71694
location: region:68086-71694:1
so has part: feature:68086-71694:1:exon
subclass of: SO_0000010

30033846
type: Gene
SIO_000068: ncbigene

position:68086:1
position: 68086
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:71694:1
position: 71694
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68086-71694:1:exon

AWJ20_1985
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SMC4
locus tag: AWJ20_1985
product: condensin subunit SMC4
transcript id: XM_018878906.1
SIO_010081: AWJ20_1985
subclass of: SO_0000673
so part of: AWJ20_1985
location: <68086..>71694
location: region:68086-71694:1
so has part: feature:68086-71694:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:68086-71694:1:exon

AWJ20_1985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SMC4
locus tag: AWJ20_1985
inference: similar to AA sequence:KEGG_Orthology:K06675
note: Subunit of the condensin complex; condensin reorganizes chromosomes during both mitosis and meiosis; forms a subcomplex with Smc2p that has ATP-hydrolyzing and DNA-binding activity, but other condensin subunits are required for chromatin binding; required for tRNA gene clustering at the nucleolus; potential Cdc28p substrate; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000799 - nuclear condensin complex [Evidence IDA] [PMID 10811823]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 12719426]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 11864994]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006268 - DNA unwinding involved in DNA replication [Evidence IMP] [PMID 24062159]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0030261 - chromosome condensation [Evidence IEA]; GO_process: GO:0051276 - chromosome organization [Evidence IEA]; GO_process: GO:0010032 - meiotic chromosome condensation [Evidence IC] [PMID 10811823]; GO_process: GO:0051307 - meiotic chromosome separation [Evidence IC] [PMID 10811823]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IMP] [PMID 10811823]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IMP] [PMID 10811823]; GO_process: GO:0070550 - rDNA condensation [Evidence IMP] [PMID 10811823]; GO_process: GO:0007130 - synaptonemal complex assembly [Evidence IC] [PMID 10811823]; GO_process: GO:0070058 - tRNA gene clustering […
codon start: 1
product: condensin subunit SMC4
translation: MRHSKVSALIHNSAAYPNLNSCSVEVHFQDVVDSANGSSTVVPGTELVITRKSFRNNSSKYMINDKESNFTEVTTLLRERGIDLDHKRFLILQGEVESIAQMKPKADNDNDDGLLEYLEDIIGTSQYKKAIEESLAEVEVLNEDCVQKQDRLKIVETELNSLEDQKNDIVTYLELENELAFKQSALWQLQAYLCQKRVELSKSIVEEQHAKLKAELDRTTVNSEEIEVLKKDHAQKLKELDLIKKTLSEKSKLLSKHEIEKVKVEERKKHLDSKRKKLEKSIEAATHSKVETETWLSNYQEESSQLSDQLKGLQKSLENENCQLEAIQDELKDKTAEFTDQIETIQKKLEPWREKTRSKESEIAVANSELELLKERESQGEKSLNESKENITITMKEGRAKEREMEKLKKELEHVTSQISMGVKECDQASIKLAKMKQQLVNGRQRVDAAKEALSSTTSQNKVLTGLTRLNDSGRIQGFRGRLGALGTIDAKYDVAISTACPSLDNMVVDTVAAGEQCVDYLRKQNLGRAKFILLEKLPKRDLSPIQTPENVPRLFDLIVPSAPEYAPAFYSVLFDTLVAKDADQARRIAYGKKRWRVVTLDGVIVEASGAMSGGGEISRGKMAAGLTEGALSEGQVQELERVQDEHEKKYKIAENTVLTMQTTLKELQERKPEIELEISKVELDITALTARLNEAKKQSAELAKSLEANRPDPSTLKRSEEHVAKLEAELKQLRSHSEGLEQDVADLQEKIMDAGGVRLRVQKSKVDGIKEQIELVNTRLANGLKENAKANNDFKKHSKTIDNCEAEISASTQELEEANKELSEKQLIIQQFEQLVSQLSDQLEEKQEILDELKSELDAKQKDIDSLRSREIEIKNTIDQHEKTIKDESNSLRSWISQLQKLQLHDLSEIKAVRVKKEKPLKKSLPRQDVEEGEEAEGNEEDEDVNEDEDVANKSILNKTELFEYSADELEAMNKAELKREIESLQTKGQNAKVDMQILKDYKRRVEEHDARRLALNESVTARDTVKKMCDDLRNRRLEEFMTGFNSISGKLKEMYQMITMGGNAELELVDSLDPFSEGILFSVMPPKKSWRNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVATYIKERTKHGQFIVISLRNNMFELAKQLVGIYKVNNMTKSIALQNNDYIHGQDSSNTTILP
SIO_010081: AWJ20_1985
subclass of: SO_0000673
so part of: AWJ20_1985
location: 68086..71694
location: region:68086-71694:1
so has part: feature:68086-71694:1:exon

XP_018736874.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:68086-71694:1:exon

AWJ20_1986
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: COQ5
locus tag: AWJ20_1986
so part of: sequence
location: complement(<71831..>72745)
location: region:71831-72745:-1
so has part: feature:71831-72745:-1:exon
subclass of: SO_0000010

30033847
type: Gene
SIO_000068: ncbigene

position:71831:-1
position: 71831
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:72745:-1
position: 72745
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:71831-72745:-1:exon

AWJ20_1986
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: COQ5
locus tag: AWJ20_1986
product: 2-hexaprenyl-6-methoxy-1,4-benzoquinone methyltransferase
transcript id: XM_018878907.1
SIO_010081: AWJ20_1986
subclass of: SO_0000673
so part of: AWJ20_1986
location: complement(<71831..>72745)
location: region:71831-72745:-1
so has part: feature:71831-72745:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:71831-72745:-1:exon

AWJ20_1986
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: COQ5
locus tag: AWJ20_1986
inference: similar to AA sequence:KEGG_Orthology:K06127
note: 2-hexaprenyl-6-methoxy-1,4-benzoquinone methyltransferase; involved in ubiquinone (Coenzyme Q) biosynthesis; localizes to the matrix face of the mitochondrial inner membrane in a large complex with other ubiquinone biosynthetic enzymes; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 9083048]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0043334 - 2-hexaprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity [Evidence IMP,ISS] [PMID 9083049]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 9083049]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IMP] [PMID 9083048]
codon start: 1
product: 2-hexaprenyl-6-methoxy-1,4-benzoquinone methyltransferase
translation: MIVKRALARAQKQSNSLRFLNCCNTAITGEPLGFVRRPYSTEGSKTTHFGFKTVPEDEKEHLVKHVFSNVASSYDYMNDAMSLGIHRLWKDHFVSKLDPGRRAGGSPLSFLDVAGGSGDIAFRILDHAAKIHGDHESVMNVVDINPEMLAEGEKRSKETPYGNTSRINFKVQNAEFLDAIPDNSQDIYTVSFGIRNFTNIPAALATAHRVLKPGGVFACLEFSKVDNSILDTLYQQYSFNIIPLLGQVLVGDRDSYQYLVESIQRFPSQEQFAGMIQDAGFTLAGSGYENLSFGIAAIHTGVKL
SIO_010081: AWJ20_1986
subclass of: SO_0000673
so part of: AWJ20_1986
location: complement(71831..72745)
location: region:71831-72745:-1
so has part: feature:71831-72745:-1:exon

XP_018736875.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:71831-72745:-1:exon

AWJ20_1987
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_1987
so part of: sequence
location: <73476..>73982
location: region:73476-73982:1
so has part: feature:73476-73982:1:exon
subclass of: SO_0000010

30033848
type: Gene
SIO_000068: ncbigene

position:73476:1
position: 73476
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:73982:1
position: 73982
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:73476-73982:1:exon

AWJ20_1987
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_1987
product: hypothetical protein
transcript id: XM_018878908.1
SIO_010081: AWJ20_1987
subclass of: SO_0000673
so part of: AWJ20_1987
location: <73476..>73982
location: region:73476-73982:1
so has part: feature:73476-73982:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:73476-73982:1:exon

AWJ20_1987
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_1987
codon start: 1
product: hypothetical protein
translation: MLRHYNHLLRAVKVAPSVQVRYTQPLLFGGIAGKLSPWNSTCRGFSSTNSRSMIPVAPIPFDDPLGGDEEDPKKKKDSKKETGRGYDIFMKCLETAGIMVASLSMLGLAGLIYHRTYKERALTKMSNAFTEGNPAFELSMHQNGEDDRNDWLVPASTYSYNMIQLTAS
SIO_010081: AWJ20_1987
subclass of: SO_0000673
so part of: AWJ20_1987
location: 73476..73982
location: region:73476-73982:1
so has part: feature:73476-73982:1:exon

XP_018736876.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:73476-73982:1:exon

AWJ20_1988
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_1988
so part of: sequence
location: <74203..>75435
location: region:74203-75435:1
so has part: feature:74203-75435:1:exon
subclass of: SO_0000010

30033849
type: Gene
SIO_000068: ncbigene

position:74203:1
position: 74203
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:75435:1
position: 75435
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:74203-75435:1:exon

AWJ20_1988
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_1988
product: hypothetical protein
transcript id: XM_018878909.1
SIO_010081: AWJ20_1988
subclass of: SO_0000673
so part of: AWJ20_1988
location: <74203..>75435
location: region:74203-75435:1
so has part: feature:74203-75435:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:74203-75435:1:exon

AWJ20_1988
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_1988
codon start: 1
product: hypothetical protein
translation: MKKTNSLYCTLLDAHADPEIFRIRLGKALNFQFHEDYLGSLFSIRGPRDTTAILDIERAFNTLETVAVKHVAKHKRPLILIINNAHMIRDDLEGQNLVELLQQKAESLSGAGLVTIVFNSDDYWLYERLKKLGTRLEVLTINDFSRKESIQALRRARMKFYGQKISDEDANKVYNLIGGRPQHLAAVASKDDPINACHKLIDKEKTWFLNQCALLGESMDDDVMESGKFSTSAMYLMKELVRLDRERLSKMTPEELATSNHEIPRIPLWRARQIMTRPDYIQHYDNLNIFTLDSLSRVKADSVVMMQAFHEIASLPGFEELLEETADRVSAIESLGRTRELVAKDLVLDGQYKISHSRNETMIKLEMPEEAENDDDERYKLDRREGFWYKGRADKFKKRQEQKENEKGKI
SIO_010081: AWJ20_1988
subclass of: SO_0000673
so part of: AWJ20_1988
location: 74203..75435
location: region:74203-75435:1
so has part: feature:74203-75435:1:exon

XP_018736877.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:74203-75435:1:exon

AWJ20_1989
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_1989
so part of: sequence
location: complement(<75545..>77095)
location: region:75545-77095:-1
so has part: feature:75545-77095:-1:exon
subclass of: SO_0000010

30033850
type: Gene
SIO_000068: ncbigene

position:75545:-1
position: 75545
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:77095:-1
position: 77095
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:75545-77095:-1:exon

AWJ20_1989
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_1989
product: DNA replication protein Dre4
transcript id: XM_018878910.1
SIO_010081: AWJ20_1989
subclass of: SO_0000673
so part of: AWJ20_1989
location: complement(<75545..>77095)
location: region:75545-77095:-1
so has part: feature:75545-77095:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:75545-77095:-1:exon

AWJ20_1989
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_1989
codon start: 1
product: DNA replication protein Dre4
translation: MSVSKDDTLPTGWTRHLAPSGHFYYYHAESKRSTYERPKSDSQVIASVKNNNSSESTSRIPTGPRTENQNHERTEKPKQSNQKRKRKKDLRSIDPPQVKVAVKDCDPWLIVILKSGRWFVYNPQTNKSFWDVPEDVLRKIEEMDRDDLILLVARARGLTLSTDSAAPKFEEQGRLEAGTEEGNANSAPDNTVIEDVSDDEGVESDRENDDDNIDLNDENSLEEMSNDDDGLGTGFELDWDNIEDDLKNDDSTGNADLTNQERLSIFYSLLEDFSINPFGVWEVELNKVLDDDRYDILESNSARSDAFDKWAALKIREQKLQHEELSTKTQDSTEDIIKKMVEDSPVGRFLSLVRRKYKEKYFYVDFKRKYRNEALFDIPELTDKDKEKIYREYASYKKKPQNDQITLVKEFLSSKIKHSSDLSKLTDTLFNDVRFYIVPDDQISKLVDETLLKLQTQKTSSSDRSIQDRQNKILAEKAKQQRQLSYERRKLEEEVEKLDEAKYSLKRNLSTVLGGK
SIO_010081: AWJ20_1989
subclass of: SO_0000673
so part of: AWJ20_1989
location: complement(75545..77095)
location: region:75545-77095:-1
so has part: feature:75545-77095:-1:exon

XP_018736878.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:75545-77095:-1:exon

AWJ20_1990
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PRE9
locus tag: AWJ20_1990
so part of: sequence
location: <77713..>78273
location: region:77713-78273:1
so has part: feature:77713-78273:1:exon
subclass of: SO_0000010

30033852
type: Gene
SIO_000068: ncbigene

position:77713:1
position: 77713
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:78273:1
position: 78273
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:77713-78273:1:exon

AWJ20_1990
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PRE9
locus tag: AWJ20_1990
product: proteasome core particle subunit alpha 3
transcript id: XM_018878912.1
SIO_010081: AWJ20_1990
subclass of: SO_0000673
so part of: AWJ20_1990
location: <77713..>78273
location: region:77713-78273:1
so has part: feature:77713-78273:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:77713-78273:1:exon

AWJ20_1990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PRE9
locus tag: AWJ20_1990
inference: similar to AA sequence:KEGG_Orthology:K02728
note: Alpha 3 subunit of the 20S proteasome; the only nonessential 20S subunit; may be replaced by the alpha 4 subunit (Pre6p) under stress conditions to create a more active proteasomal isoform; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0042175 - nuclear outer membrane-endoplasmic reticulum membrane network [Evidence IC] [PMID 9087403]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 9087403]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005839 - proteasome core complex [Evidence IEA]; GO_component: GO:0019773 - proteasome core complex, alpha-subunit complex [Evidence IEA]; GO_component: GO:0019773 - proteasome core complex, alpha-subunit complex [Evidence IDA] [PMID 9087403]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0004175 - endopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004298 - threonine-type endopeptidase activity [Evidence IEA,IEA]; GO_process: GO:0010499 - proteasomal ubiquitin-independent protein catabolic process [Evidence IDA] [PMID 19162040]; GO_process: GO:0080129 - proteasome core complex assembly [Evidence IMP] [PMID 14739934]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 11545745]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 19029916]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]
codon start: 1
product: proteasome core particle subunit alpha 3
translation: MYILDDHIVCAVAGIDSDASILVNRARVFAQSYLKTYSEEIPCEILVKRLCDIKQGYTQYGGLRPFGVSFVFAGYDDLHGFQLYTSNPSGNYSGWKATSVGANGASAQTLLKQEYKEDFSLDQACELAMKVLSKTMDSATLTSEKLEFSTVGKDSASGKVYQKIWKPADIDALLKATGLGKAEEDD
SIO_010081: AWJ20_1990
subclass of: SO_0000673
so part of: AWJ20_1990
location: 77713..78273
location: region:77713-78273:1
so has part: feature:77713-78273:1:exon

XP_018736879.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:77713-78273:1:exon

AWJ20_1991
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_1991
so part of: sequence
location: complement(<78447..>79427)
location: region:78447-79427:-1
so has part: feature:78447-79427:-1:exon
subclass of: SO_0000010

30033853
type: Gene
SIO_000068: ncbigene

position:78447:-1
position: 78447
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:79427:-1
position: 79427
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:78447-79427:-1:exon

AWJ20_1991
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_1991
product: hypothetical protein
transcript id: XM_018878913.1
SIO_010081: AWJ20_1991
subclass of: SO_0000673
so part of: AWJ20_1991
location: complement(<78447..>79427)
location: region:78447-79427:-1
so has part: feature:78447-79427:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:78447-79427:-1:exon

AWJ20_1991
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_1991
codon start: 1
product: hypothetical protein
translation: MNLKGSENIQIKGTRAISREVMPKMSPFDATSEADSGRKGLRNSSSPQLPDELWVAVFEFLDIPDLYNCSKVDHRFRRLAQDPQLHHRRLTQTAKWLERAYPLRPSCKDLYDRNILLSRVQLAPSPCQKHILASTRLARIFVKDSLRRGLSRRPTRKELIDRGVMKHGGSIFADKIGSLERQRVVDIIRGFFSDSQRPSLEAAIRRGVVSPPDQENKPVRVLTRIFSYCFRESSESPRSSHATRMLIDPPTRANVHRMTEWFEELARNERSSFRFGTQPSQTSSSFGPYAFSTVATTLSSPSPVHQISGISYDGVSAIRQRFLAIS
SIO_010081: AWJ20_1991
subclass of: SO_0000673
so part of: AWJ20_1991
location: complement(78447..79427)
location: region:78447-79427:-1
so has part: feature:78447-79427:-1:exon

XP_018736880.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:78447-79427:-1:exon

AWJ20_1992
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TAO3
locus tag: AWJ20_1992
so part of: sequence
location: complement(<80095..>87144)
location: region:80095-87144:-1
so has part: feature:80095-87144:-1:exon
subclass of: SO_0000010

30033854
type: Gene
SIO_000068: ncbigene

position:80095:-1
position: 80095
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:87144:-1
position: 87144
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:80095-87144:-1:exon

AWJ20_1992
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TAO3
locus tag: AWJ20_1992
product: Tao3p
transcript id: XM_018878914.1
SIO_010081: AWJ20_1992
subclass of: SO_0000673
so part of: AWJ20_1992
location: complement(<80095..>87144)
location: region:80095-87144:-1
so has part: feature:80095-87144:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:80095-87144:-1:exon

AWJ20_1992
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TAO3
locus tag: AWJ20_1992
note: Component of the RAM signaling network; is involved in regulation of Ace2p activity and cellular morphogenesis, interacts with protein kinase Cbk1p and also with Kic1p; GO_component: GO:0005933 - cellular bud [Evidence IDA] [PMID 12972564]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 11854408]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 12972564]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007118 - budding cell apical bud growth [Evidence IGI,IMP] [PMID 12972564]; GO_process: GO:0007114 - cell budding [Evidence IGI,IMP] [PMID 11854408]; GO_process: GO:0000902 - cell morphogenesis [Evidence IGI,IMP] [PMID 11854408]
codon start: 1
product: Tao3p
translation: MFWRKSKSEAAATAAQSATNHSSSKNNSTGNLAELKEAALRMERKSLISIYILCRVLMEVVKQSPPDVLGDDLSEKLEEIVFKQLRTGDPRTLSMSVIRRENWNLFAELLGEMSNSRFLSVGDRFIAELEKVPSVISKEQEPHILLLINGMKYLKLKIYPMDALEESAEFIESLGKFFSRSNSTPVKIAYSEALSQILLPLAGVATAELNHPMWVKPVETIFAKAMEMIAKPKYWAVAFQLATVILSVAPQELFARHWLTLFESHASKIKDKANRAVIYIGVSRLLWVFVFRWSETLNSTTKKLDIVSKVLFNPGNKKLWTSWESGITTAACVYLIRIGSHGYLQYVLDNILLQMVHSGSVDTLTLESIIPERATVGVRSFMYILSDHETTGTSASRPPFPDDVVLQSVMSNKDRSEPKHIPLPTGSLLQFYEKCCKCIVKLAVLCDTQFGAHITSVDDRPIQLKPMSVSFHFGNNDSYAQHQRLAYLELFSAVIDFIPWCHFPDTQTLTRTTEILCRNVVHSNPKVAQASISALKCLVETRDTRAIVNIYTKLMFSFDEKIFTSYDCPPSSASEFEKILQVYVSLLEIWIANIRVLTKRDANQSETSGSLSVSQPSDDDSSRRSDDMILNNWWSAVEEIEGNGLFFLCSQDRAIRLLAVKIIRLTTEFDEAIRDHGQHMTKSHSRTPSKSTLTPPCRVIQLMETVDLTELFEASKPNIELSMPERSRLAKLHGKKKETLVALAESDYGVDTALWLKAFPTFIKKCFENYPIPIAICRNIVCVRLVRMYDVVVEFSRSEAVAGTANYAFILKHPMRTHPEVVVEQWRTYLIVACSTLTLTDEQKLHIPDSRYQHGRKKSAQKITIHHQRITSVRSVFRMVIPLLGVDHPVIRDAIITGIGCINVNIYKALIECLQPAIETWAEESQRLNQSQSNQSNVSSKQTVGIRKDSSAAISLAYRQERVITEIVHLLYITSHYLELPSVAEDEWIISEFVGFLNTLRNFLSLPRVQVDYNFQKLRRYFCGLLENVFLGVSRNTERSNPISFESRMRYFTLIEDWCTVGQHWNVAREREAKMKRAALSTVKDSREHNIILASMELEKKKSDIAILSVLAALCAGPLMQPLDAAGRRKSNVSFNISGLLKWIGTMFESPNDEMHSLGKRALKNLLIHNPDHPIIFEETVANGYRIHSEPKASKSYFVALAEILLEIPDYPCEVRQALALGLFKTGDEDDEVRSLAVDLLKATEIRFYGTSCLQEYRVNITNSTPVVYKRAMFNLSSRFAKDHPQETYLVFSELTKFFHVVNDISRRDILAVLLPWIQAVELQVEVNDMPTPSTAMVMNNLFEITVTFSNRIQNEVEALWVALGNGKYPNNVNAIMNFVLHHSLERRDPVFVEYSRKILAYLAAPPAGTTLIDALMKYLQPKAMIPQHLEPYDLSIAERMYPYVATISAVLPVGNKETTFSHGQLALILLVDLIVSPLESVKANLPLILHVSLVLFDHYLPIINDRSRELLVHVVNEFAGSQAGAQEFCELIRVSNSKFNWSYDNLNSDKNGARTPKMMVQMIKDILGIFGTQIPDLRENWSRVALMWATTCPVRHIACRSFQVFRCLLFTLDQNMLADMLARLSNTISDSTTDIQGFAMQILMTLNAVTAELASEDLINYPQLFWATVACLGTVHEQEFIEVLSILEKFISKIDLDSAETVACLIATFPPKWEAKFRGLQHAVIPGLRSSLAWEQSLRILDRLNQLQDSEIIAGPDRLALAISINLPRYLHALEIGETTPEIEASSDRLRQMCDERGLGALSRILVSFGKGRFRSKQDFLNQTIQALQNNFFPSCEGSVLIFLLGILSNKIKWVKTETMDILKKILPMVDLQKEEFAGVGADIISPLLRLLQTDYAEQALGVLDETISISASNMDKHVLRMSLGNRTIRKEYEKTATMFGIPDESGWAIPMPAVTANITRNNVHAVFYTCNTTPSTEQIPVSAEEFQFHKEEYGFMGG…
SIO_010081: AWJ20_1992
subclass of: SO_0000673
so part of: AWJ20_1992
location: complement(80095..87144)
location: region:80095-87144:-1
so has part: feature:80095-87144:-1:exon

XP_018736881.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:80095-87144:-1:exon

AWJ20_1993
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: NOP1
locus tag: AWJ20_1993
so part of: sequence
location: complement(<90163..>91146)
location: region:90163-91146:-1
so has part: feature:90163-91146:-1:exon
subclass of: SO_0000010

30033855
type: Gene
SIO_000068: ncbigene

position:90163:-1
position: 90163
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:91146:-1
position: 91146
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:90163-91146:-1:exon

AWJ20_1993
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: NOP1
locus tag: AWJ20_1993
product: rRNA methyltransferase NOP1
transcript id: XM_018878915.1
SIO_010081: AWJ20_1993
subclass of: SO_0000673
so part of: AWJ20_1993
location: complement(<90163..>91146)
location: region:90163-91146:-1
so has part: feature:90163-91146:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:90163-91146:-1:exon

AWJ20_1993
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: NOP1
locus tag: AWJ20_1993
inference: similar to AA sequence:KEGG_Orthology:K14563
note: Histone glutamine methyltransferase, modifies H2A at Q105 in nucleolus; component of the small subunit processome complex, which is required for processing of pre-18S rRNA; ortholog of mammalian fibrillarin; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0031428 - box C/D snoRNP complex [Evidence IDA] [PMID 11081632]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11932453]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 2686980]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:1990259 - histone-glutamine methyltransferase activity [Evidence IMP] [PMID 24352239]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0008649 - rRNA methyltransferase activity [Evidence IDA,IMP] [PMID 12215523]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0000494 - box C/D snoRNA 3'-end processing [Evidence IMP] [PMID 10733567]; GO_process: GO:0000494 - box C/D snoRNA 3'-end processing [Evidence IMP] [PMID 15167896]; GO_process: GO:1990258 - histone glutamine methylation [Evidence IDA,IMP] [PMID 24352239]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0031167 - rRNA methylation [Evidence IDA,IMP] [PMID 12215523]; GO_process: GO:0031167 - rRNA methylation [Evidence IMP] [PMID 8431947]; GO_process: GO:0006364 - rRNA processing [Evidence IEA,IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 1825809]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0043144 - snoRNA processing [Evidence IMP] [PMID 1825809]; GO_process: GO:0008033 - tRNA processin…
codon start: 1
product: rRNA methyltransferase NOP1
translation: MAFTPGGRGGSRGGGRGGFGGGRGGFGGGRGGAPGGGRGGFGGGRGGARGGAAGGRGGRGGARGGRGGPRGGRGGARGGRGGAAGGAKVVIEPHKHAGVFIARGKEDLLVTKNLTPGESVYGEKRVSIDVPGQGEDAVATKVEYRVWNPFRSKLAAGILGGLDELFVGPGKKVLYLGAASGTSVSHVADVVGPEGVVYAVEFSHRSGRDLISMAKKRPNVIPIIEDARHPQKYRMLVGMVDVVFADVAQPDQARIIALNSHLFLKDQGGVVISIKANCIDSTVEAETVFAREVQKLREERVKPLEQLTLEPYERDHCIVVGRYVRSS
SIO_010081: AWJ20_1993
subclass of: SO_0000673
so part of: AWJ20_1993
location: complement(90163..91146)
location: region:90163-91146:-1
so has part: feature:90163-91146:-1:exon

XP_018736882.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:90163-91146:-1:exon

AWJ20_1994
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RPL17A
locus tag: AWJ20_1994
so part of: sequence
location: <92150..>92707
location: region:92150-92707:1
so has part: feature:92150-92707:1:exon
subclass of: SO_0000010

30033856
type: Gene
SIO_000068: ncbigene

position:92150:1
position: 92150
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:92707:1
position: 92707
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:92150-92707:1:exon

AWJ20_1994
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RPL17A
locus tag: AWJ20_1994
product: ribosomal 60S subunit protein L17A
transcript id: XM_018878916.1
SIO_010081: AWJ20_1994
subclass of: SO_0000673
so part of: AWJ20_1994
location: <92150..>92707
location: region:92150-92707:1
so has part: feature:92150-92707:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:92150-92707:1:exon

AWJ20_1994
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RPL17A
locus tag: AWJ20_1994
inference: similar to AA sequence:KEGG_Orthology:K02880
note: Ribosomal 60S subunit protein L17A; copurifies with the Dam1 complex (aka DASH complex); homologous to mammalian ribosomal protein L17 and bacterial L22; RPL17A has a paralog, RPL17B, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 18782943]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0015934 - large ribosomal subunit [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 18782943]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IDA] [PMID 18782943]; GO_process: GO:0006412 - translation [Evidence IEA]
codon start: 1
product: ribosomal 60S subunit protein L17A
translation: MTRYSTTPVNPAKSASSRGSYLRVSYKNTYETAQAVNGWPLTKALTYLEQVSEKKRAIPFRKHAGSIGRASQGKEFGVTKARWPVKSVKFVSDLLKNAQANADAKGLDTEKLVIKHIQVNQAPKQRRRTYRAHGRINPYQSSPCHIEIILTEADEEIAKAPETSVVRLNSRQRGAKASQKRITAA
SIO_010081: AWJ20_1994
subclass of: SO_0000673
so part of: AWJ20_1994
location: 92150..92707
location: region:92150-92707:1
so has part: feature:92150-92707:1:exon

XP_018736883.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:92150-92707:1:exon

AWJ20_1995
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: COY1
locus tag: AWJ20_1995
so part of: sequence
location: complement(<93098..>95224)
location: region:93098-95224:-1
so has part: feature:93098-95224:-1:exon
subclass of: SO_0000010

30033857
type: Gene
SIO_000068: ncbigene

position:93098:-1
position: 93098
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:95224:-1
position: 95224
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:93098-95224:-1:exon

AWJ20_1995
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: COY1
locus tag: AWJ20_1995
product: Coy1p
transcript id: XM_018878917.1
SIO_010081: AWJ20_1995
subclass of: SO_0000673
so part of: AWJ20_1995
location: complement(<93098..>95224)
location: region:93098-95224:-1
so has part: feature:93098-95224:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:93098-95224:-1:exon

AWJ20_1995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: COY1
locus tag: AWJ20_1995
inference: similar to AA sequence:KEGG_Orthology:K09313
note: Golgi membrane protein with similarity to mammalian CASP; genetic interactions with GOS1 (encoding a Golgi snare protein) suggest a role in Golgi function; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IGI] [PMID 12429822]; GO_component: GO:0030173 - integral component of Golgi membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0048193 - Golgi vesicle transport [Evidence IGI] [PMID 12429822]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Coy1p
translation: MSSANNSPKIPEDDVNANSTAPTSTGGPSAPEGQSTTTTTSKEALNPFEQAIKVWSDIDLSSLQKSLDDEGDQILVNQTTSVKGRKELASRTKSFRKLSDEEKLVEIKSLLKLYQTEIDNLTNRGKFAETSFMNVYKLLAEAPDPRPLLEASVDSVISASEVNRLMTENARLNDLVSRHADYDSVKAKLLKVEQSSIETARAKVNAKEAEMNALFDEKERNWKLREEELQRQIEDLSANKDVAEARLSAHNSSIDPSEGAKSRLLELELVAGDLERANRKVAQVEKRNLELRTELEGLKSETKANEEKAVLESKISDLEGENAIVLAKIQSLDSKLATQTAASQQKIEVLERDVSRKSEEITTLKNRLHKQQDYEEIKRELDVLKSIEFDVGEDDGERSARSISTQNENAQETKLEKMLLTRNKKLTSDLTNLRVTNHELNEANQAANRQISSLTSELEEARNLNNKLEEDLLTLKNSGTSPAMSTVSGWNNSSWGGKNSVNGRVSPTSSIIGGRDGRDLRGGPTPTTSSSDSSILPIITQQRDRFRQRNAELESELRKNWALISSLQKEVETVKKDNVELYERTRYASSYKAQSKRGGSSAEDRYRSVYEEGLTPFQQFRGRETERALSKMGPLERIVYSFFRGVLSNRLSRNFFFLYCLGLHLLVMVILMYGATSSPVLEVPSTVPGTGAEESLVSEAAVQLAEHP
SIO_010081: AWJ20_1995
subclass of: SO_0000673
so part of: AWJ20_1995
location: complement(93098..95224)
location: region:93098-95224:-1
so has part: feature:93098-95224:-1:exon

XP_018736884.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:93098-95224:-1:exon

AWJ20_1996
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: FUN26
locus tag: AWJ20_1996
so part of: sequence
location: <96127..>97461
location: region:96127-97461:1
so has part: feature:96127-97461:1:exon
subclass of: SO_0000010

30033858
type: Gene
SIO_000068: ncbigene

position:96127:1
position: 96127
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:97461:1
position: 97461
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:96127-97461:1:exon

AWJ20_1996
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: FUN26
locus tag: AWJ20_1996
product: nucleoside transmembrane transporter FUN26
transcript id: XM_018878918.1
SIO_010081: AWJ20_1996
subclass of: SO_0000673
so part of: AWJ20_1996
location: <96127..>97461
location: region:96127-97461:1
so has part: feature:96127-97461:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:96127-97461:1:exon

AWJ20_1996
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: FUN26
locus tag: AWJ20_1996
inference: similar to AA sequence:KEGG_Orthology:K15014
codon start: 1
product: nucleoside transmembrane transporter FUN26
translation: MPEDNEDNEAVYLLNEEGDVPPNLIGTNSPPSISNLDYVAYATIGASYLWPWNCLLSATPYFQGRFEGYKFLQANFSSFVMSITTVTGTLFTILLADRQKNADYSWRVRVGELTIASVFLLLAFSCALSIPAVPYFLFILLCVFSSSIGTGLTQNGSYAIGNTLTSSHTQAITVGQAVSGVLPPIISMLSAIGSGASKEHSNDVNESLDVRESGSSSTNSSVGSALYFLAATAVCTAAIICFRQSEKYRKSNASGFSFSNENPAPEPLSATKKQHIPLSTLFSKLFVPASTVFITFAITLIYPVFAGTVKSSNGIPTQFFIPAVYLFWNSGDLLGRVLCGRPQFVVKDRRALTGYAVARLLFVPAFFLTNINGDGIIQSDVYYLLLQFAFGVTNGQLVTSALMESPSFVNENEKEAAGGFMTMSLSIGLAVGSLLSFVLVWILG
SIO_010081: AWJ20_1996
subclass of: SO_0000673
so part of: AWJ20_1996
location: 96127..97461
location: region:96127-97461:1
so has part: feature:96127-97461:1:exon

XP_018736885.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:96127-97461:1:exon

AWJ20_1997
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_1997
so part of: sequence
location: complement(<97544..>97846)
location: region:97544-97846:-1
so has part: feature:97544-97846:-1:exon
subclass of: SO_0000010

30033859
type: Gene
SIO_000068: ncbigene

position:97544:-1
position: 97544
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:97846:-1
position: 97846
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:97544-97846:-1:exon

AWJ20_1997
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_1997
product: hypothetical protein
transcript id: XM_018878919.1
SIO_010081: AWJ20_1997
subclass of: SO_0000673
so part of: AWJ20_1997
location: complement(<97544..>97846)
location: region:97544-97846:-1
so has part: feature:97544-97846:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:97544-97846:-1:exon

AWJ20_1997
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_1997
codon start: 1
product: hypothetical protein
translation: MLTTKLQSLWLLRQVIQGEGHSYELQGGKFILRLANIFLQGSYKGLLVQVEYNSSGSEDTSGQIQKINEFLAQYGLKFVGNKLAKDEIGTAWQYVDALSR
SIO_010081: AWJ20_1997
subclass of: SO_0000673
so part of: AWJ20_1997
location: complement(97544..97846)
location: region:97544-97846:-1
so has part: feature:97544-97846:-1:exon

XP_018736886.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:97544-97846:-1:exon

AWJ20_1998
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RPD3
locus tag: AWJ20_1998
so part of: sequence
location: <98510..>99682
location: region:98510-99682:1
so has part: feature:98510-99682:1:exon
subclass of: SO_0000010

30033860
type: Gene
SIO_000068: ncbigene

position:98510:1
position: 98510
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:99682:1
position: 99682
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:98510-99682:1:exon

AWJ20_1998
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RPD3
locus tag: AWJ20_1998
product: histone deacetylase RPD3
transcript id: XM_018878920.1
SIO_010081: AWJ20_1998
subclass of: SO_0000673
so part of: AWJ20_1998
location: <98510..>99682
location: region:98510-99682:1
so has part: feature:98510-99682:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:98510-99682:1:exon

AWJ20_1998
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RPD3
locus tag: AWJ20_1998
inference: similar to AA sequence:KEGG_Orthology:K11405
codon start: 1
product: histone deacetylase RPD3
translation: MPVAYAYSEELIEYADKLPSNKGRASRVNALIESFGLMDKFDGIIRVKPCTQADLEKYHDKNFIKFLLTGDDGLDAESETEGEESDESYEGKDEPVSKEALYGLHYDCPPFDGLEKYVKLVAGATLQCADYLVSLLDTDIAQNTSKVAINWTGGRHHAKRAACSGFCYVNDINLGIQRLRTKFDKVLYVDLDLHHGDGVETAFAYSDKVKSVSVHRYERGFFPGTGGMNTTSRSVVNIPTKYGLSDKSFIQIFDTIIVAEKEDFQPDAVVVTTGCDGLARDELREWNLSFSSFEYIIDQIVNSWKLPTLLLGGGGYHTLDTARCLAICTAAALNVPDRKQWVEIPMHDYFNEYVKDNYSLRVESHVRHNTPDENSEEYLKKLADYFEHRR
SIO_010081: AWJ20_1998
subclass of: SO_0000673
so part of: AWJ20_1998
location: 98510..99682
location: region:98510-99682:1
so has part: feature:98510-99682:1:exon

XP_018736887.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:98510-99682:1:exon

AWJ20_1999
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: BFR1
locus tag: AWJ20_1999
so part of: sequence
location: <100425..>101837
location: region:100425-101837:1
so has part: feature:100425-101837:1:exon
subclass of: SO_0000010

30033861
type: Gene
SIO_000068: ncbigene

position:100425:1
position: 100425
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:101837:1
position: 101837
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:100425-101837:1:exon

AWJ20_1999
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: BFR1
locus tag: AWJ20_1999
product: Bfr1p
transcript id: XM_018878921.1
SIO_010081: AWJ20_1999
subclass of: SO_0000673
so part of: AWJ20_1999
location: <100425..>101837
location: region:100425-101837:1
so has part: feature:100425-101837:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:100425-101837:1:exon

AWJ20_1999
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: BFR1
locus tag: AWJ20_1999
note: Component of mRNP complexes associated with polyribosomes; implicated in secretion and nuclear segregation; multicopy suppressor of BFA (Brefeldin A) sensitivity; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23222640]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 23222640]; GO_component: GO:0042175 - nuclear outer membrane-endoplasmic reticulum membrane network [Evidence IDA] [PMID 11410665]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 11410665]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IDA] [PMID 11410665]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 11410665]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0016071 - mRNA metabolic process [Evidence IPI] [PMID 11410665]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IMP] [PMID 8913743]; GO_process: GO:0007088 - regulation of mitosis [Evidence IMP] [PMID 8913743]
codon start: 1
product: Bfr1p
translation: MSKSNSPTPAPAAGAGKRVTRPNKEAFNAKLAELEAEFKTAEKNLEIARNDVKKALGTSTPQTEEREKLSNELNEIAAKQRQFKTSNASIKKEIDIIDENIKRSIKDLKALKDKNSYKSVDEVNAKIKSLERDIESGKLRLVEEKRYIADISNLKKIKNSFGQLDQLQASIDAERAKLAKVRGTLDTTSQNALSDRYNEVKKQLDAIRDGQQKAYKEKNTLFEKRDAANKVRDAARSNISKLKDEYYGQLRAYTAQAEADRIARAEKEEAEKKAFAAEKKKAELREKLEAASEPAFANQIDIAENLLVHFDPEYKRADSNDISLKSTGPVKTASGRTIDVPHGAELKKSDEELFAGLGGKKNKKKSSSDSKLRLNVGIIDDFATLNIPIPVSKDDVEGTIAKLKEKIQYYKENQDRVTAERIERAKAEIAKLELADKEDEEKKEEEEEKAEEAPAATEKAEPEASVEASA
SIO_010081: AWJ20_1999
subclass of: SO_0000673
so part of: AWJ20_1999
location: 100425..101837
location: region:100425-101837:1
so has part: feature:100425-101837:1:exon

XP_018736888.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:100425-101837:1:exon

AWJ20_2000
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: FEN2
locus tag: AWJ20_2000
so part of: sequence
location: complement(<101977..>103020)
location: region:101977-103020:-1
so has part: feature:101977-103020:-1:exon
subclass of: SO_0000010

30033865
type: Gene
SIO_000068: ncbigene

position:101977:-1
position: 101977
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:103020:-1
position: 103020
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:101977-103020:-1:exon

AWJ20_2000
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: FEN2
locus tag: AWJ20_2000
product: Fen2p
transcript id: XM_018878925.1
SIO_010081: AWJ20_2000
subclass of: SO_0000673
so part of: AWJ20_2000
location: complement(<101977..>103020)
location: region:101977-103020:-1
so has part: feature:101977-103020:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:101977-103020:-1:exon

AWJ20_2000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: FEN2
locus tag: AWJ20_2000
inference: similar to AA sequence:KEGG_Orthology:K03448
note: Plasma membrane H+-pantothenate symporter; confers sensitivity to the antifungal agent fenpropimorph; relocalizes from vacuole to cytoplasm upon DNA replication stress; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IGI,ISS] [PMID 10373490]; GO_function: GO:0015233 - pantothenate transmembrane transporter activity [Evidence IGI,IMP] [PMID 10373490]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 15020461]; GO_process: GO:0015887 - pantothenate transmembrane transport [Evidence IGI,IMP] [PMID 10373490]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Fen2p
translation: MLGSWYKKNELGKRAAIFVSVGDIGSMAGGWIQAGLFARLDGHGLPAWRLIFIVVFAMTIPFVFLGLIAIPDLPRHENAWFLSDEEKKLAIDRLQRHVPTETMSLRVVWRAVKSWQFWLMPFIFFLYGVSVQMLGNNVMPLWMKSRGYTVVQMNNYPTVIFAFAIVGTLGYSFLSDRLGSRWQASVAIGFTFTLCCPILLSNNVPDGAKFFAFFFLGTCLAPQALWFTWCADVTSHDLYLRSITTGWMNAIDEAFIAWWPIVFYPVTDAPTFRTGYIASLVLGTLIVPTVGAIVYLDRRDQRLHYDADSDDEQTPIEGVGHNSSQRSILANDASKLQSNYNSIEVTI
SIO_010081: AWJ20_2000
subclass of: SO_0000673
so part of: AWJ20_2000
location: complement(101977..103020)
location: region:101977-103020:-1
so has part: feature:101977-103020:-1:exon

XP_018736889.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:101977-103020:-1:exon

AWJ20_2001
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2001
so part of: sequence
location: <104711..>107242
location: region:104711-107242:1
so has part: feature:104711-107242:1:exon
subclass of: SO_0000010

30033866
type: Gene
SIO_000068: ncbigene

position:104711:1
position: 104711
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:107242:1
position: 107242
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:104711-107242:1:exon

AWJ20_2001
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2001
product: hypothetical protein
transcript id: XM_018878926.1
SIO_010081: AWJ20_2001
subclass of: SO_0000673
so part of: AWJ20_2001
location: <104711..>107242
location: region:104711-107242:1
so has part: feature:104711-107242:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:104711-107242:1:exon

AWJ20_2001
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2001
codon start: 1
product: hypothetical protein
translation: MGQQVTGANDLGLNIAVESHGRFIAVSDSNKRVRIMAFGLSDDNSLASIIDSRQDIQSRHTISIGGGVVLNMAFLTTGSTAYNTSTSMSPKIAPVASQGDPRTTGGDDVYLVLLYAVSRKLKLNMYKVPYGQREFSYIHDIGLCGTFTLSLDFKEEIPMYMVPVSMNESSAIVLVTKRQLLLVTFLDIMSGHRILTSALLPDYPLAVHQSPYNKDRSVFYLTTKDSHLYRVKVSEMRGFELLSFKHWPGRDLGSSFVLQPYDDEGPTSDINSDRLLITFGGDLCCGGSMVFNSVGMIYDDGEQADIEEEGDVDIYDNWAPISDFKPINIQSTSRGDSLELFACTGLHHQGAITQFRHGIRASVFLQGPSMTEAPQLYSMQSHDGLESYLIVSLPWKTTLYLVEQSTIDEQNGQEAYFPQLSEVPNNCGIDYKNETKAISFLPETKFVIQVTSSQILLTDLMGSSKRFDVTRASCAAIFKSMVAVAFYDEDALSNKVVIYSINSVNYEDGDNWIERKSVVLMSHPVSFVKFTERKDNGINLFIGSYEPRIDVYHIDNDCDARLVLEIKNIFTDEEEVPNDLHLQDRMLDRFIIGLRNGSYINCVLEDMTMRLESKKKLANLPIQFVNIDHKPGPNVFVLSNGRLSCFDKKNFLEAPQKVVVDIDKVADIRSACQFYYNMEDGKHQFVAVIMNNRLTILALDLFATVIPKQVHLGASPRRMLYLEHIGALAVVVSPSSTSKTSLLRFVDPKRMVEIDFRLYDATSPSSKTCFQANEVIYSLNEWSLKIDGNTYKFLLLGSGIKGLPEGKFRILRLSRTTEGIKATIQHSWITAGHVYSVSQFEAL
SIO_010081: AWJ20_2001
subclass of: SO_0000673
so part of: AWJ20_2001
location: 104711..107242
location: region:104711-107242:1
so has part: feature:104711-107242:1:exon

XP_018736890.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:104711-107242:1:exon

AWJ20_2002
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PET309
locus tag: AWJ20_2002
so part of: sequence
location: <109047..>112073
location: region:109047-112073:1
so has part: feature:109047-112073:1:exon
subclass of: SO_0000010

30033867
type: Gene
SIO_000068: ncbigene

position:109047:1
position: 109047
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:112073:1
position: 112073
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:109047-112073:1:exon

AWJ20_2002
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PET309
locus tag: AWJ20_2002
product: Pet309p
transcript id: XM_018878927.1
SIO_010081: AWJ20_2002
subclass of: SO_0000673
so part of: AWJ20_2002
location: <109047..>112073
location: region:109047-112073:1
so has part: feature:109047-112073:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:109047-112073:1:exon

AWJ20_2002
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PET309
locus tag: AWJ20_2002
note: Specific translational activator for the COX1 mRNA; also influences stability of intron-containing COX1 primary transcripts; localizes to the mitochondrial inner membrane; contains seven pentatricopeptide repeats (PPRs); GO_component: GO:0031314 - extrinsic component of mitochondrial inner membrane [Evidence IDA] [PMID 18039654]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 9692914]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 9692914]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0045182 - translation regulator activity [Evidence IGI] [PMID 7664742]; GO_process: GO:0016070 - RNA metabolic process [Evidence IMP] [PMID 7664742]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 7664742]; GO_process: GO:0097034 - mitochondrial respiratory chain complex IV biogenesis [Evidence IMP] [PMID 7664742]; GO_process: GO:0070134 - positive regulation of mitochondrial translational initiation [Evidence IMP] [PMID 18039654]; GO_process: GO:0070134 - positive regulation of mitochondrial translational initiation [Evidence IMP] [PMID 7664742]
codon start: 1
product: Pet309p
translation: MSWSGILRSSSSNTLRRSEALYWSLQSYSQAYFSGSWNRYLLAASIVWENGLFGATTKDTRKRLNKTRVGKTHLEKFWHQKRKLSSWSPSCASAVNITSSRSPEFAGSASIGQISKGPEMGAVPRDLINALNPKNLSDLELIESWRKEITSTDRRRQMQALAKKQELYSHFLSSLQRTPNEDLLEQLLALVHCVPHPHSSVDYNFRIYLLRISGELDMISCCLEEASNQLSKDEFLAVLRAVVDDFISSHTPIPPSFLNIFASTILKYDGTLELLSRRYHEERSILKSIIRHLSTASPTLTSILDDFLRNSPHFGSMLVTTCIDILGQPEDVKPQLVEQLWNRKLELDLASPLDLHRVMTAFYHNCQYEQVLHLYDSYPSLHMHWQFDIVLLTLAKLRNWDRLQTVFESLFRHDDLPDINHYGIVIQALSQLGKVDIVDTLFSSLLAKSINPSIEILHGLMYSRLALGEVHGVEYFFNQITILGLRPNPRSYNILLRSYRDSHEIQKALNLIGQMAELNIPITRYAVTTLISTCTERRDTETGEALFDWALSYGIKPDIIMFNSLIACYMESNCLTKAEKIYEMMKEGSHCRPTVDTLTSMLTGYSRMATKIPNSQQKVLKLEEDMKKYSISPDDRWLSSLMHYNLSIKNFKQVEAIFVDLTKKYRVDTTPYHYSIMMEAYIIQRKLKEAEELYNTMKQQNVIPTFNTQEKYLRLKISDPAAKVRQEAAGYLQDFLQATDIIDLESKQLPRNVIPFSMVKRVSREFMKSGNYESALEFMKPYNEEGYDPKEQFKVSAFMLELYGHAGYWSLIEKTWESFLEQVRRAYVPVKVSDGAEPRYEKRLPTRYRGTFWQAVNSKLNQLQNFGQYSKMLDLISWAEKEGLGVTSKNMNTLVKGLLFDDKFLVKAFEVSEECLAPTTVAKLQAKGSGHTHPLYGLKYKDYNLSMSTFKALVRKFDRLITITAYEGKCSRLKAFILVNEKYPKLMKLFSWREKSRTKRRPRLAAST
SIO_010081: AWJ20_2002
subclass of: SO_0000673
so part of: AWJ20_2002
location: 109047..112073
location: region:109047-112073:1
so has part: feature:109047-112073:1:exon

XP_018736891.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:109047-112073:1:exon

AWJ20_2003
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SPC3
locus tag: AWJ20_2003
so part of: sequence
location: complement(<112221..>112631)
location: region:112221-112631:-1
so has part: feature:112221-112631:-1:exon
subclass of: SO_0000010

30033868
type: Gene
SIO_000068: ncbigene

position:112221:-1
position: 112221
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:112631:-1
position: 112631
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:112221-112631:-1:exon

AWJ20_2003
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SPC3
locus tag: AWJ20_2003
product: Spc3p
transcript id: XM_018878928.1
SIO_010081: AWJ20_2003
subclass of: SO_0000673
so part of: AWJ20_2003
location: complement(<112221..>112631)
location: region:112221-112631:-1
so has part: feature:112221-112631:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:112221-112631:-1:exon

AWJ20_2003
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SPC3
locus tag: AWJ20_2003
inference: similar to AA sequence:KEGG_Orthology:K12948
note: Subunit of signal peptidase complex; complex catalyzes cleavage of N-terminal signal sequences of proteins targeted to the secretory pathway; homologous to mammalian SPC22/23; other members of the complex are Spc1p, Spc2p, and Sec11p; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005787 - signal peptidase complex [Evidence IEA]; GO_component: GO:0005787 - signal peptidase complex [Evidence IDA] [PMID 1846444]; GO_component: GO:0005787 - signal peptidase complex [Evidence IDA] [PMID 8910564]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IMP] [PMID 9148930]; GO_function: GO:0008233 - peptidase activity [Evidence IMP] [PMID 9148931]; GO_process: GO:0045047 - protein targeting to ER [Evidence IMP] [PMID 9148931]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006465 - signal peptide processing [Evidence IEA]; GO_process: GO:0006465 - signal peptide processing [Evidence IMP] [PMID 9148930]; GO_process: GO:0006465 - signal peptide processing [Evidence IDA,IMP] [PMID 9148931]
codon start: 1
product: Spc3p
translation: MSRKVAARFGRRGGSVDGKAKDNYRIKFDLSTDLSPLFNWNTKQVFVYLTAEYDGKREDINNRVTFWDSIIKSKEDAVLDLKNVRGSYSVYDVGSSLENKNATIRLEWNVQPHVGFLIFGETVATEDGSFIFPALT
SIO_010081: AWJ20_2003
subclass of: SO_0000673
so part of: AWJ20_2003
location: complement(112221..112631)
location: region:112221-112631:-1
so has part: feature:112221-112631:-1:exon

XP_018736892.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:112221-112631:-1:exon

AWJ20_2004
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: UGA2
locus tag: AWJ20_2004
so part of: sequence
location: <115250..>116755
location: region:115250-116755:1
so has part: feature:115250-116755:1:exon
subclass of: SO_0000010

30033869
type: Gene
SIO_000068: ncbigene

position:115250:1
position: 115250
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:116755:1
position: 116755
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:115250-116755:1:exon

AWJ20_2004
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: UGA2
locus tag: AWJ20_2004
product: succinate-semialdehyde dehydrogenase (NAD(P)(+))
transcript id: XM_018878929.1
SIO_010081: AWJ20_2004
subclass of: SO_0000673
so part of: AWJ20_2004
location: <115250..>116755
location: region:115250-116755:1
so has part: feature:115250-116755:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:115250-116755:1:exon

AWJ20_2004
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: UGA2
locus tag: AWJ20_2004
inference: similar to AA sequence:KEGG_Orthology:K00135
note: Succinate semialdehyde dehydrogenase; involved in the utilization of gamma-aminobutyrate (GABA) as a nitrogen source; part of the 4-aminobutyrate and glutamate degradation pathways; localized to the cytoplasm; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_function: GO:0009013 - succinate-semialdehyde dehydrogenase [NAD(P)+] activity [Evidence IEA,IEA]; GO_function: GO:0009013 - succinate-semialdehyde dehydrogenase [NAD(P)+] activity [Evidence IMP,ISS] [PMID 11031268]; GO_function: GO:0009013 - succinate-semialdehyde dehydrogenase [NAD(P)+] activity [Evidence IMP] [PMID 3888627]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 11031268]; GO_process: GO:0009450 - gamma-aminobutyric acid catabolic process [Evidence IEA,IEA]; GO_process: GO:0009450 - gamma-aminobutyric acid catabolic process [Evidence IEP,IMP,ISS] [PMID 11031268]; GO_process: GO:0009450 - gamma-aminobutyric acid catabolic process [Evidence IMP] [PMID 3888627]; GO_process: GO:0006540 - glutamate decarboxylation to succinate [Evidence IGI,IMP,ISS] [PMID 11031268]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]
codon start: 1
product: succinate-semialdehyde dehydrogenase (NAD(P)(+))
translation: MLRSRIFTRAMSSTGKPVLKNPKLLRDKSYVDGQWISASSGKTFKVFDPATCQEIGSVPEHTAADYAKAIEHAKKAFASFSKTSNRERSNLLRKWASLLTENSEDLAKILTWENGKPLPEAKGEIASCVANFEWFSEEAPRIYGDTIPSQNPNTRIHTIKQPVGVCGIITPWNFPASMISRKVGAAVATGCTTVIKPAAETPYSALALAYLAEEAGIPKGVVNVLTTNEHVQDVGREICENPLVSKVTFTGSTNVGRILMKQAASTLKKVSFELGGNAPFIVFEDADIDAAVDGAIASKFRGSGQTCICANRFYVHEKIYDEFAKKLAAKVSGFKVGNGLEEGTTQGPLINEKAVQKVDRHVQDALGKHAHALVGGKPATELGENFYSPTVLVDVDASMAVTQEETFGPLAALSKFSTDEEVIKLANNVEVGLAAYIYTNNNSRVHRVSEGLQVGMVGVNTGLITESALPFGGVKESGFGREGSKYGLDDYLVIKSVVNAI
SIO_010081: AWJ20_2004
subclass of: SO_0000673
so part of: AWJ20_2004
location: 115250..116755
location: region:115250-116755:1
so has part: feature:115250-116755:1:exon

XP_018736893.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:115250-116755:1:exon

AWJ20_2005
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2005
so part of: sequence
location: complement(<115696..>116136)
location: region:115696-116136:-1
so has part: feature:115696-116136:-1:exon
subclass of: SO_0000010

30033870
type: Gene
SIO_000068: ncbigene

position:115696:-1
position: 115696
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:116136:-1
position: 116136
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:115696-116136:-1:exon

AWJ20_2005
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2005
product: hypothetical protein
transcript id: XM_018878930.1
SIO_010081: AWJ20_2005
subclass of: SO_0000673
so part of: AWJ20_2005
location: complement(<115696..>116136)
location: region:115696-116136:-1
so has part: feature:115696-116136:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:115696-116136:-1:exon

AWJ20_2005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2005
codon start: 1
product: hypothetical protein
translation: MAPSTAASMSASSNTMKGALPPNSKETFLRVDAACFMRILPTLVEPVKVTLLTNGFSQISLPTSWTCSLVVNTLTTPLGIPASSARYANANAEYGVSAAGLMTVVQPVATAAPTFLEIIEAGKFQGVMIPQTPTGCLIVWIRVLGF
SIO_010081: AWJ20_2005
subclass of: SO_0000673
so part of: AWJ20_2005
location: complement(115696..116136)
location: region:115696-116136:-1
so has part: feature:115696-116136:-1:exon

XP_018736894.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:115696-116136:-1:exon

AWJ20_2006
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2006
so part of: sequence
location: complement(<116820..>118130)
location: region:116820-118130:-1
so has part: feature:116820-118130:-1:exon
subclass of: SO_0000010

30033871
type: Gene
SIO_000068: ncbigene

position:116820:-1
position: 116820
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:118130:-1
position: 118130
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:116820-118130:-1:exon

AWJ20_2006
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2006
product: hypothetical protein
transcript id: XM_018878931.1
SIO_010081: AWJ20_2006
subclass of: SO_0000673
so part of: AWJ20_2006
location: complement(<116820..>118130)
location: region:116820-118130:-1
so has part: feature:116820-118130:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:116820-118130:-1:exon

AWJ20_2006
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2006
inference: similar to AA sequence:KEGG_Orthology:K11979
codon start: 1
product: hypothetical protein
translation: MPYDPNHCTHHDAPMRQQLFACLTCRAKDKQDNGICYSCSIQCHSNHELVELFARRGFSCDCGTTRMASFGACNLRKNFDGLDTPEETNKYNHNFSGRFCSCDQVYDPSSEQGIMFQCLLGDACDEEWFHEECILGVDRLGTVETEANPESTSVKDDAIDDTALKSHYPQGVNMYDLLEPAESSVVKAPEEIKEEQEKSEQNQDGNLAVNNEEDDEDEEGDEDDEDDTLDGLPRQEDIGAFICWKCVEKNPILLKWGKSWPEVAHEPVVHGIFKTIEERELSIKSLKPEPSNRDVEKNEFDKRALDDGVSSIQPLKKIKSDEQKQEVSLFLKPGFHDHVKASSDPDIKAFAEKFPFLLEEESVYEPPQDDDANSSLLDAGTRALNSIPRDQAINGMQAYSMIRERLSLFLRPFAEQGKVVTEHDVTNFFEEVRNEK
SIO_010081: AWJ20_2006
subclass of: SO_0000673
so part of: AWJ20_2006
location: complement(116820..118130)
location: region:116820-118130:-1
so has part: feature:116820-118130:-1:exon

XP_018736895.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:116820-118130:-1:exon

AWJ20_2007
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RAD57
locus tag: AWJ20_2007
so part of: sequence
location: <118446..>119633
location: region:118446-119633:1
so has part: feature:118446-119633:1:exon
subclass of: SO_0000010

30033872
type: Gene
SIO_000068: ncbigene

position:118446:1
position: 118446
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:119633:1
position: 119633
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:118446-119633:1:exon

AWJ20_2007
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RAD57
locus tag: AWJ20_2007
product: putative DNA-dependent ATPase RAD57
transcript id: XM_018878932.1
SIO_010081: AWJ20_2007
subclass of: SO_0000673
so part of: AWJ20_2007
location: <118446..>119633
location: region:118446-119633:1
so has part: feature:118446-119633:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:118446-119633:1:exon

AWJ20_2007
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RAD57
locus tag: AWJ20_2007
inference: similar to AA sequence:KEGG_Orthology:K10958
codon start: 1
product: putative DNA-dependent ATPase RAD57
translation: MDLYESYPSCSLLKNTNFDSLLSAFEEFEITTADLVVNDPKVIAQRCGRSQVELLRFLNIFYKEALNGLEFINIGELQDGKLDKNTACLSGTSSSPLQESCISTRMLTTGDSKFDSELRGGIPAGYITEVSGESGSGKSNFLTQLCVTVQLPKALGGLEKSALYICTESGFETRRLIDMIEYIKQTHSLNESQISSDNVHCINCRDQEHLEQVLKYQLPVAIERFNVGILLIDSIAAHLRAEFDLQHVQQRNNKLILLSRHLRKLASLNELAVVIANQVSDRFIRNLPAHSEPDALFLDHQIRWFSGWEEPNIVVPPSSSFHSSQQSTPATTERPRTPSLGLAWSNCIDQRIVLKRALLPDGSSHRTFNIVFSPFSPQSCTPFKIMKGGVYSIDT
SIO_010081: AWJ20_2007
subclass of: SO_0000673
so part of: AWJ20_2007
location: 118446..119633
location: region:118446-119633:1
so has part: feature:118446-119633:1:exon

XP_018736896.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:118446-119633:1:exon

AWJ20_2008
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MCM2
locus tag: AWJ20_2008
so part of: sequence
location: <119897..>122404
location: region:119897-122404:1
so has part: feature:119897-122404:1:exon
subclass of: SO_0000010

30033873
type: Gene
SIO_000068: ncbigene

position:119897:1
position: 119897
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:122404:1
position: 122404
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:119897-122404:1:exon

AWJ20_2008
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MCM2
locus tag: AWJ20_2008
product: MCM DNA helicase complex subunit MCM2
transcript id: XM_018878933.1
SIO_010081: AWJ20_2008
subclass of: SO_0000673
so part of: AWJ20_2008
location: <119897..>122404
location: region:119897-122404:1
so has part: feature:119897-122404:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:119897-122404:1:exon

AWJ20_2008
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MCM2
locus tag: AWJ20_2008
inference: similar to AA sequence:KEGG_Orthology:K02540
note: Protein involved in DNA replication; component of the Mcm2-7 hexameric helicase complex that binds chromatin as a part of the pre-replicative complex; relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IDA] [PMID 9554851]; GO_component: GO:0042555 - MCM complex [Evidence IEA]; GO_component: GO:0042555 - MCM complex [Evidence IDA] [PMID 12480933]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10704410]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 16824194]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 9335335]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10704410]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003678 - DNA helicase activity [Evidence IEA]; GO_function: GO:0003678 - DNA helicase activity [Evidence IDA] [PMID 18657510]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 11756674]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 16824194]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 10783164]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IMP] [PMID 17895243]; GO_function: GO:0017116 - single-stranded DNA-dependent ATP-dependent DNA helicase activity [Evidence …
codon start: 1
product: MCM DNA helicase complex subunit MCM2
translation: MSGSRKRDRRNSEDFRGEPPSSPNLPMANLASSPPAFEDEDELIQEDVIDDLDELAEEEAGEDLFGDNMERDYMESRQNDQYDLGDQNIDDNEYDDLDISARRQVDAQLNRRDRQIRNQRGLPDAFLDDGDGYDDLVPPTTRRRRNQYDEDLAMDNSDDDDPMNEILSLESLGDVKAESIAEWVSQPSVHRSVAREFKNFLLEYTDENGRSVYGNRIRTLGEVNSESLEIVYTHLVESKATLAYFLAVAPTEILKIFDVVAMEAIELHYPEYSRIHAEVHVRISGLPTTFTLRDLRENHLNSLVRVTGVVTRRTGVFPQLKYVKFNCPKCGMILGPYFQDSNTEVTISFCHSCQSRGPFILNSEKTVYRNYQKITLQESPGTVPAGRLPRHREVILLWDLIDVAKPGEEVDITGIYKNSYDGGLNAKNGFPVFATVIEANLVQRREAGKTGDFTLTEEEEREIRTLAKSKDIINTIIRSIAPSIYGHKDIKTALACSLFGGVAKRQEKHTVRGDINVLLLGDPGTAKSQLLKYVEKTAHRAVFATGQGASAVGLTASVRKDPITREWTLEGGALVLADKGTCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCAVIAAANPNGGRYNSTIPFAANVDLTEPILSRFDVLCVVRDTVDPEVDEMLAKFVVTSHTKNHPLDPGEGNSGLQQEDEDDDMGEEEEEDLLASLQPNAGATISQELLRKYIHYARTKFQPRLSQQYEGKIGSIYSEIRQYSRNTGSFPITVRHLESIIRLSESFAKMRLSENVSEGDVNRAISVTIDSFVGAQKSSLRRSLRRSLMKYTYNN
SIO_010081: AWJ20_2008
subclass of: SO_0000673
so part of: AWJ20_2008
location: 119897..122404
location: region:119897-122404:1
so has part: feature:119897-122404:1:exon

XP_018736897.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:119897-122404:1:exon

AWJ20_2009
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MAF1
locus tag: AWJ20_2009
so part of: sequence
location: complement(<122694..>123470)
location: region:122694-123470:-1
so has part: feature:122694-123470:-1:exon
subclass of: SO_0000010

30033874
type: Gene
SIO_000068: ncbigene

position:122694:-1
position: 122694
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:123470:-1
position: 123470
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:122694-123470:-1:exon

AWJ20_2009
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MAF1
locus tag: AWJ20_2009
product: RNA polymerase III-inhibiting protein MAF1
transcript id: XM_018878934.1
SIO_010081: AWJ20_2009
subclass of: SO_0000673
so part of: AWJ20_2009
location: complement(<122694..>123470)
location: region:122694-123470:-1
so has part: feature:122694-123470:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:122694-123470:-1:exon

AWJ20_2009
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MAF1
locus tag: AWJ20_2009
codon start: 1
product: RNA polymerase III-inhibiting protein MAF1
translation: MSPPTLQVFSPPSSYYPTSNVHEHVFDPNSKENVLSRSRRNSRANSGYAGSLGTHTSNYNSGGNGTLTVSNIIQNSTAGSLSSSPFGPLDQAASRKTFAYLISVLNASDPDRDFSSLQPEDFKREPSSTSVVNTFNNILFGQGLPVPPRLWETLDKNIDLKESSIYSHTPPEAFLADEPGTMWSMMWFFFNKRRKRVAYIHLKAVRHYQSPLLTAVDSRRRRKDEIKDEYDEDKDEYDLTYSSDSQMYDEVVGDLELE
SIO_010081: AWJ20_2009
subclass of: SO_0000673
so part of: AWJ20_2009
location: complement(122694..123470)
location: region:122694-123470:-1
so has part: feature:122694-123470:-1:exon

XP_018736898.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:122694-123470:-1:exon

AWJ20_2010
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PPH3
locus tag: AWJ20_2010
so part of: sequence
location: complement(<124618..>125844)
location: region:124618-125844:-1
so has part: feature:124618-125844:-1:exon
subclass of: SO_0000010

30033876
type: Gene
SIO_000068: ncbigene

position:124618:-1
position: 124618
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:125844:-1
position: 125844
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:124618-125844:-1:exon

AWJ20_2010
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PPH3
locus tag: AWJ20_2010
product: phosphoprotein phosphatase PP4 catalytic subunit PPH3
transcript id: XM_018878936.1
SIO_010081: AWJ20_2010
subclass of: SO_0000673
so part of: AWJ20_2010
location: complement(<124618..>125844)
location: region:124618-125844:-1
so has part: feature:124618-125844:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:124618-125844:-1:exon

AWJ20_2010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PPH3
locus tag: AWJ20_2010
note: Catalytic subunit of protein phosphatase PP4 complex; active complex is composed of Pph3p and Psy2p, with Psy4p apparently providing additional substrate specificity in some cases; regulates recovery from the DNA damage checkpoint and also the gene conversion- and single-strand annealing-mediated pathways of meiotic double-strand break repair; involved in activation of Gln3p to alleviate nitrogen catabolite repression; Pph3p and Psy2p localize to foci on meiotic chromosomes; GO_component: GO:0000794 - condensed nuclear chromosome [Evidence IDA] [PMID 20951350]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0030289 - protein phosphatase 4 complex [Evidence IDA,IMP] [PMID 16299494]; GO_component: GO:0030289 - protein phosphatase 4 complex [Evidence IDA] [PMID 17517611]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA,IMP] [PMID 16299494]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA] [PMID 7941742]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IGI] [PMID 21135129]; GO_process: GO:2000002 - negative regulation of DNA damage checkpoint [Evidence IMP] [PMID 16299494]; GO_process: GO:2000002 - negative regulation of DNA damage checkpoint [Evidence IMP] [PMID 17517611]; GO_process: GO:1902660 - negative regulation of glucose mediated signaling pathway [Evidence IMP] [PMID 24277933]; GO_process: GO:0051173 - positive regulation of nitrogen compound metabolic process [Evidence IMP] [PMID 10940301]; GO_process: GO:0006470 - protein dep…
codon start: 1
product: phosphoprotein phosphatase PP4 catalytic subunit PPH3
translation: MSLVDETIELLKSCSHVPESVVKQLCYKAQELLIEEGNVQLVHTPVTICGDIHGQFHDLLTLFSIGGECPTTSYLFLGDFVDRGFYSLESFLLLLCLKVRYPDSITLIRGNHESRQITSAYGFYDECLRKYGSASVWRLCCNVFDYLSLSALVGGPGGVFCVHGGLSPAIQNLNEIRHIDRKQEVPHDGPMCDLLWSDPDDSLDMTNENKDDIYDNELNENGNGHDADEEDAGTNTNYRVNHAGSGNGTGSSGESSEGMRSDSNSNDEDIYSPVSSPDIGLNGLYDLSKSGGNRSTLQSMAASWGVSPRGAGYLFGSLPVHQFNHINNTSLIARAHQLVLEGYKEMFDNQLVTVWSAPNYCYRCGNVAAILNIDDNYERRYSIFHAQEADQGTGQVVPTKRPVAEYFL
SIO_010081: AWJ20_2010
subclass of: SO_0000673
so part of: AWJ20_2010
location: complement(124618..125844)
location: region:124618-125844:-1
so has part: feature:124618-125844:-1:exon

XP_018736899.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:124618-125844:-1:exon

AWJ20_2011
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RSN1
locus tag: AWJ20_2011
so part of: sequence
location: <129665..>132304
location: region:129665-132304:1
so has part: feature:129665-132304:1:exon
subclass of: SO_0000010

30033877
type: Gene
SIO_000068: ncbigene

position:129665:1
position: 129665
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:132304:1
position: 132304
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:129665-132304:1:exon

AWJ20_2011
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RSN1
locus tag: AWJ20_2011
product: Rsn1p
transcript id: XM_018878937.1
SIO_010081: AWJ20_2011
subclass of: SO_0000673
so part of: AWJ20_2011
location: <129665..>132304
location: region:129665-132304:1
so has part: feature:129665-132304:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:129665-132304:1:exon

AWJ20_2011
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RSN1
locus tag: AWJ20_2011
note: Membrane hypothetical protein; overexpression suppresses NaCl sensitivity of sro7 mutant cells by restoring sodium pump (Ena1p) localization to the plasma membrane; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19001347]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 17005914]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IGI] [PMID 17005914]
codon start: 1
product: Rsn1p
translation: MGGSSSSSTSSGSTIGTTAVFNIAVFVIFVTAFLILRPRHKNVYQPRVIAKTVPDSSRPRPLATGNFVWFRDLLSRPDSEILRDAGLDGYFFLRYLRLIFFICLVGIILVYPVLLAVNATGGGTPQGVSNSGFDILSFVNVRNKNRYFAHVFIGYLFFGFILFSLYRELQYYVAVRQSVLTSPAYSNLVSSRTILLTTLPDEYMNSSKLANLFEGVKFVFINKNAKDLAKKVKQRGKLAGNIESAEVSLLKKAVSNRLKSEKKGASPIEGEDIDVYVPQKKRPTRRLKPIIGKKVDTIDHDSQELQEVNTEIEQLQSKYTSLPSLNSAFITFHTQEQAELGYQSLAHQQALHMAPRYIGITPDDVIWSNLRLKWWERLIKELGTTAIICALIIFWSIPVAFVGALSNIKALEKKLPWLDFLNNLPKPLMGLVTGLLPTILLAVLMMLLPIFIRLMGKLAGNPSKSRVEYYTQNAYFGFQVVQVFLVTTIASGASAVVVQIIEDPSSAMSLLATNLPKASNFYIAYFMLQGFTACGSMLLQIVSLILFYVLGFILDGTPRKKWNRNNVIGSLGWGTVFPVYTNLAVITITYSIISPLLLAFSGITFGLIYLAYLHNLMFVKSPSDGRGIYYARAILQTFTGLYIAEVCLLGLFLLAKSWGPLVLQAIFLGFTVFVNLSLKSAFSPLLFQLPRSLLRAEARDDNRKYSRSSAGSVIPSPDTSFEKNHNDAHPSSYPLTNEPSNAPIVNQSQVEAGRTKYGPIPSGGTIARFFKPHLYLTPEVLNQELLNAPVFHEPQAPLSDEEESVAYNHPAANAPNPVVWIPRDPWGLSAAQVQSLRERDVNVSDDGTWFDIDETKKKSKFGFTSSISEVPIWTQPPNY
SIO_010081: AWJ20_2011
subclass of: SO_0000673
so part of: AWJ20_2011
location: 129665..132304
location: region:129665-132304:1
so has part: feature:129665-132304:1:exon

XP_018736900.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:129665-132304:1:exon

AWJ20_2012
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: IPP1
locus tag: AWJ20_2012
so part of: sequence
location: <132768..>133616
location: region:132768-133616:1
so has part: feature:132768-133616:1:exon
subclass of: SO_0000010

30033878
type: Gene
SIO_000068: ncbigene

position:132768:1
position: 132768
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:133616:1
position: 133616
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:132768-133616:1:exon

AWJ20_2012
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: IPP1
locus tag: AWJ20_2012
product: inorganic diphosphatase IPP1
transcript id: XM_018878938.1
SIO_010081: AWJ20_2012
subclass of: SO_0000673
so part of: AWJ20_2012
location: <132768..>133616
location: region:132768-133616:1
so has part: feature:132768-133616:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:132768-133616:1:exon

AWJ20_2012
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: IPP1
locus tag: AWJ20_2012
inference: similar to AA sequence:KEGG_Orthology:K01507
note: Cytoplasmic inorganic pyrophosphatase (PPase); homodimer that catalyzes the rapid exchange of oxygens from Pi with water, highly expressed and essential for viability, active-site residues show identity to those from E. coli PPase; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004427 - inorganic diphosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004427 - inorganic diphosphatase activity [Evidence IDA] [PMID 8224193]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0006796 - phosphate-containing compound metabolic process [Evidence IEA]; GO_process: GO:0006796 - phosphate-containing compound metabolic process [Evidence IC] [PMID 8224193]
codon start: 1
product: inorganic diphosphatase IPP1
translation: MSTSPYGIRKIGAQNTLEHKVYIEKDGKPISAFHDVPLYANAEKTILNMIVEVPRWTNAKMEISKELPLNPIVQDTKKGKLRFVRNCFPHKGYIHNYGAFPQTWEDPNFTHPETKAVGDNDPLDVCEIGEAVGYTGQIKQVKVLGVMALLDEGETDWKIIAIDVKDPHASKVNDIEDVEKNFPGLLRATNEWFRIYKIPDGKPENQFAFSGECKNKKYAEDVIRECAEAWEKLVAGKVDPKGIELSTAESEAASAVATGENLPPAPIDASIDKWFFIAGASV
SIO_010081: AWJ20_2012
subclass of: SO_0000673
so part of: AWJ20_2012
location: 132768..133616
location: region:132768-133616:1
so has part: feature:132768-133616:1:exon

XP_018736901.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:132768-133616:1:exon

AWJ20_2013
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TRP1
locus tag: AWJ20_2013
so part of: sequence
location: complement(<134501..>136195)
location: region:134501-136195:-1
so has part: feature:134501-136195:-1:exon
subclass of: SO_0000010

30033879
type: Gene
SIO_000068: ncbigene

position:134501:-1
position: 134501
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:136195:-1
position: 136195
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:134501-136195:-1:exon

AWJ20_2013
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TRP1
locus tag: AWJ20_2013
product: phosphoribosylanthranilate isomerase TRP1
transcript id: XM_018878939.1
SIO_010081: AWJ20_2013
subclass of: SO_0000673
so part of: AWJ20_2013
location: complement(<134501..>136195)
location: region:134501-136195:-1
so has part: feature:134501-136195:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:134501-136195:-1:exon

AWJ20_2013
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TRP1
locus tag: AWJ20_2013
inference: similar to AA sequence:KEGG_Orthology:K01817
note: Phosphoribosylanthranilate isomerase; catalyzes the third step in tryptophan biosynthesis; in 2004, the sequence of TRP1 from strain S228C was updated by changing the previously annotated internal STOP (TAA) to serine (TCA); GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0004640 - phosphoribosylanthranilate isomerase activity [Evidence IEA,IEA]; GO_function: GO:0004640 - phosphoribosylanthranilate isomerase activity [Evidence IDA] [PMID 3286643]; GO_function: GO:0004640 - phosphoribosylanthranilate isomerase activity [Evidence IMP] [PMID 348687]; GO_process: GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000162 - tryptophan biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0000162 - tryptophan biosynthetic process [Evidence IMP] [PMID 10790693]; GO_process: GO:0000162 - tryptophan biosynthetic process [Evidence IDA] [PMID 3286643]; GO_process: GO:0000162 - tryptophan biosynthetic process [Evidence IMP] [PMID 348687]; GO_process: GO:0006568 - tryptophan metabolic process [Evidence IEA]
codon start: 1
product: phosphoribosylanthranilate isomerase TRP1
translation: MADIAIFNDKARCPVDEQRRIFSQSRNCTPSSPFIVGHLNHSHTEPDDFIQFSQIGASVLVNCSGITLHNLAARNAINRLAVRPLLLWASESDKTQEYIVGEEVEAAVTGSDGILYHSSDLFRNDNPETIDFAVSKFQQCKAQALSSIVTIENHNHLTAFLSLPIKPTAVFTFDDKELAASVSSALQGSVAHVHLQTITDQNPYNPSNNNFSAIFIEDVQNIPKMDAHLVQVPTHSSSKSAKSTISTSITPSSSDNSPLVKVCGIKTVEAAIKALESGADMIGMILVPGRSRTVDFQDAKKISDAVHNYGRAPAILPSPSPVSQTSQPSRRLSVISSTTSLFQKATHLSNKDTSSLPNSLNSSSSTSISQHPGSPISRRGSTQTLLPPWPSLTNIPSGASVFEVNSRIVRAKTKRRPAIVGVFQNQPLETILSLQHELDLDYVQLHGDEPLEWCRIIPVPVIKRFTPNTDGFANSSLVGYHYISLLDGEIGGEGKLVDWSSAKSQVALGARFILAGGLNESNVASALQTEGVFGVDVSGGVETAGTKDLNKIERFVKTAKAVNL
SIO_010081: AWJ20_2013
subclass of: SO_0000673
so part of: AWJ20_2013
location: complement(134501..136195)
location: region:134501-136195:-1
so has part: feature:134501-136195:-1:exon

XP_018736902.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:134501-136195:-1:exon

AWJ20_2014
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SUA5
locus tag: AWJ20_2014
so part of: sequence
location: <137434..>138573
location: region:137434-138573:1
so has part: feature:137434-138573:1:exon
subclass of: SO_0000010

30033880
type: Gene
SIO_000068: ncbigene

position:137434:1
position: 137434
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:138573:1
position: 138573
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:137434-138573:1:exon

AWJ20_2014
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SUA5
locus tag: AWJ20_2014
product: Sua5p
transcript id: XM_018878940.1
SIO_010081: AWJ20_2014
subclass of: SO_0000673
so part of: AWJ20_2014
location: <137434..>138573
location: region:137434-138573:1
so has part: feature:137434-138573:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:137434-138573:1:exon

AWJ20_2014
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SUA5
locus tag: AWJ20_2014
inference: similar to AA sequence:KEGG_Orthology:K07566
note: Protein involved in threonylcarbamoyl adenosine biosynthesis; Sua5p and Qri7p are necessary and sufficient for RNA t6A modification in vitro; null mutant lacks N6-threonylcarbamoyl adenosine (t6A) modification in the anticodon loop of ANN-decoding tRNA; member of conserved YrdC/Sua5 family; binds single-stranded telomeric DNA and null mutant has abnormal telomere length; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003725 - double-stranded RNA binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0043047 - single-stranded telomeric DNA binding [Evidence IDA] [PMID 19369944]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence IMP] [PMID 19884342]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0000723 - telomere maintenance [Evidence IMP] [PMID 19369944]; GO_process: GO:0070526 - threonylcarbamoyladenosine biosynthetic process [Evidence IDA] [PMID 23620299]; GO_process: GO:0070525 - threonylcarbamoyladenosine metabolic process [Evidence IMP] [PMID 19287007]; GO_process: GO:0070525 - threonylcarbamoyladenosine metabolic process [Evidence IMP] [PMID 21183954]
codon start: 1
product: Sua5p
translation: MYTKVLPVDPESIRFDPDDINKPPSIASPSSTLDNLNEAVKILQTSHDPVAFPTETVYGLGASALDTESARAIYTAKNRPADNPLIIHVSSIEQLERRLLPAGERVPEIYRGLINKFWPGPLTIILPVPDPTAISPVCTHGQSTFAVRLPANPVARALISLSDLPLAAPSANASTKPSPTQAQHVFTDLKGKIPLILDGGSSDIGVESTVVDGLSNPPMLLRPGGVSIEQIREFGGPSWQNVVVGRATAKSDEVVRTPGMKYKHYSPRAPLTLFIGCTEQQLIDYVIRSNPSSVGLLTTRHFNQKELAKTLRQLPGHITVHDKSLGQSGADISRNLFASFREMDAKGVDLILVEGIDEQNEGLAIMNRARKAASTVISA
SIO_010081: AWJ20_2014
subclass of: SO_0000673
so part of: AWJ20_2014
location: 137434..138573
location: region:137434-138573:1
so has part: feature:137434-138573:1:exon

XP_018736903.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:137434-138573:1:exon

AWJ20_2015
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PMR1
locus tag: AWJ20_2015
so part of: sequence
location: complement(<138695..>141475)
location: region:138695-141475:-1
so has part: feature:138695-141475:-1:exon
subclass of: SO_0000010

30033881
type: Gene
SIO_000068: ncbigene

position:138695:-1
position: 138695
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:141475:-1
position: 141475
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:138695-141475:-1:exon

AWJ20_2015
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PMR1
locus tag: AWJ20_2015
product: Ca(2+)/Mn(2+)-transporting P-type ATPase PMR1
transcript id: XM_018878941.1
SIO_010081: AWJ20_2015
subclass of: SO_0000673
so part of: AWJ20_2015
location: complement(<138695..>141475)
location: region:138695-141475:-1
so has part: feature:138695-141475:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:138695-141475:-1:exon

AWJ20_2015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PMR1
locus tag: AWJ20_2015
inference: similar to AA sequence:KEGG_Orthology:K01537
note: High affinity Ca2+/Mn2+ P-type ATPase; required for Ca2+ and Mn2+ transport into Golgi; involved in Ca2+ dependent protein sorting and processing; D53A mutant (Mn2+ transporting) is rapamycin sensitive, Q783A mutant (Ca2+ transporting) is rapamycin resistant; Mn2+ transport into Golgi lumen appears to be required for rapamycin sensitivity; mutations in human homolog ATP2C1 cause acantholytic skin condition Hailey-Hailey disease; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 24124599]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 9092527]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IDA] [PMID 10545175]; GO_function: GO:0005388 - calcium-transporting ATPase activity [Evidence IEA,IEA]; GO_function: GO:0005388 - calcium-transporting ATPase activity [Evidence IDA,IMP] [PMID 10545175]; GO_function: GO:0005388 - calcium-transporting ATPase activity [Evidence IMP] [PMID 1379856]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0015410 - manganese-transporting ATPase activity [Evidence IDA] [PMID 10801856]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0070588 - calcium ion transmembrane transport [Evidence IEA,IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IEA,IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IDA,IMP] [PMID 10545175]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006874 - …
codon start: 1
product: Ca(2+)/Mn(2+)-transporting P-type ATPase PMR1
translation: MSEKSSNGRVETGPTPIANGQLPAATYCSLSSEETAARLHTSLTVGLESSQDVNYRKSVHGPNELTGQEQDSLGIRFLQQFYENPLILLLIGSAAISFIMGNIDDAVSITVAIFIVVTVGFVQEYRSEQSLEALNKLVPPSCHLTRGNHSSTVLASNLVPGDLVHFSVGDRIPADVRITEAAGLSIDESNLTGEPHPVHKDIQEVKTESPLGTIPVSDRTCIAFMGTLVCAGNGSGIVVGTGHNTEFGSVFEMMAEIDKPKTPLQISMDKLGKELSLMSFGVIGMICLIGVIQGRSWLDMFQIGVSLAVAAIPEGLPIIVTVTLALGVLRMAEEKAIMRRLPSVETLGSVNVICSDKTGTLTKNRMTVTKLWTVGMGSTSKSWLTIDSHSTVNELTHHVTDNPALPVMLQVGNFCNNTRTSEETGKHIGNPTDVALIDVLDKFGLEDARNTRTRVSETPFSSSRKWMAVSAHSGDATNSTVYVKGAVERILPLCKKYVDAKGKPNGTIDEKSSKAINDVATTMALEGVRILAFAYSLKPSQDTENLQDLVFAGLIGMYDPPRPGVNNSINRLMQGSVKVIMITGDSEATASTIAKQIGMPLNGERSVMTGETLERLSTKELAEAISYVTVFARTSPENKLNIVRALQARGDVVAMTGDGVNDAPALKLADIGISMGESGTDVAKEAADMVLVDDDFNTILNAIKEGKAIFSNIQNFLAFQLSTSVAALTLVVLSTLFKLPNPLNAMQILWINILMDGPPAQSLGVEPVDPVVMTKPPRSRNDHVLTRSLVQRVFQSGLLIVFGTLFVYVREMSDNVVTARDTTMSFTCFVFFDMFNALSCRSTTKSVLEIGLFSNKMFNFAVGFSLLGQMAVIYVPFFQAIFQTEALYLSDLILLIALSSSVLIVDEIRKHYVRKNEWMSRYSNAV
SIO_010081: AWJ20_2015
subclass of: SO_0000673
so part of: AWJ20_2015
location: complement(138695..141475)
location: region:138695-141475:-1
so has part: feature:138695-141475:-1:exon

XP_018736904.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:138695-141475:-1:exon

AWJ20_2016
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2016
so part of: sequence
location: <140253..>140750
location: region:140253-140750:1
so has part: feature:140253-140750:1:exon
subclass of: SO_0000010

30033882
type: Gene
SIO_000068: ncbigene

position:140253:1
position: 140253
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:140750:1
position: 140750
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:140253-140750:1:exon

AWJ20_2016
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2016
product: unintegrated signal peptide
transcript id: XM_018878942.1
SIO_010081: AWJ20_2016
subclass of: SO_0000673
so part of: AWJ20_2016
location: <140253..>140750
location: region:140253-140750:1
so has part: feature:140253-140750:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:140253-140750:1:exon

AWJ20_2016
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2016
codon start: 1
product: unintegrated signal peptide
translation: MTGSAGLSVTWCVSSLTVLWESIVSHDFDVEPMPTVHSLVTVMRFLVKVPVLSLQITLTDPRVSTLGRRRIIAFSSAIRSTPSANVTVTIIGNPSGIAATANDTPIWNMSNHERPWITPIKQIIPMTPKLIKESSLPSLSMEICNGVLGLSISAIISNTLPNSVL
SIO_010081: AWJ20_2016
subclass of: SO_0000673
so part of: AWJ20_2016
location: 140253..140750
location: region:140253-140750:1
so has part: feature:140253-140750:1:exon

XP_018736905.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:140253-140750:1:exon

AWJ20_2017
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MET10
locus tag: AWJ20_2017
so part of: sequence
location: complement(<142679..>145846)
location: region:142679-145846:-1
so has part: feature:142679-145846:-1:exon
subclass of: SO_0000010

30033883
type: Gene
SIO_000068: ncbigene

position:142679:-1
position: 142679
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:145846:-1
position: 145846
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:142679-145846:-1:exon

AWJ20_2017
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MET10
locus tag: AWJ20_2017
product: sulfite reductase subunit alpha
transcript id: XM_018878943.1
SIO_010081: AWJ20_2017
subclass of: SO_0000673
so part of: AWJ20_2017
location: complement(<142679..>145846)
location: region:142679-145846:-1
so has part: feature:142679-145846:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:142679-145846:-1:exon

AWJ20_2017
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MET10
locus tag: AWJ20_2017
inference: similar to AA sequence:KEGG_Orthology:K00380
note: Subunit alpha of assimilatory sulfite reductase; complex converts sulfite into sulfide; GO_component: GO:0009337 - sulfite reductase complex (NADPH) [Evidence IDA] [PMID 6751400]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors [Evidence IEA]; GO_function: GO:0004783 - sulfite reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0004783 - sulfite reductase (NADPH) activity [Evidence IDA] [PMID 6751400]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0019344 - cysteine biosynthetic process [Evidence IEA]; GO_process: GO:0070814 - hydrogen sulfide biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0000103 - sulfate assimilation [Evidence IMP] [PMID 19236486]; GO_process: GO:0000103 - sulfate assimilation [Evidence IMP] [PMID 7928966]
codon start: 1
product: sulfite reductase subunit alpha
translation: MSPSIDEKSDRVTNGQAKISGPFPISGDIMTLEGSFYASAQLLIQQIAYSLSESIFSYSPEDFDLDSAVSEWSKFGQKSAKGITPQLHKLESRIGAASVLLGYLYNRGGINSEVQTVLASSATLEYMKPVLAQFALEEDYKTPLVFQIAAVDYATETGKLVTDYLPAAHISRDLGLGLISSLSVNDAQHIALLATALSRVLPTIHVYEGVRGVRETSRTNNVLDAVDVSNKYDAIKASEGSLSSKILSTFENLNASLGTSYRPFEYSGDANAETVIVSFGSVEGVIASQVVQALPNVGAVNVRLYSPFLDQEFLRLLPSSTKKIIVLGQVENQGQVDDSRVHSGLYSDVATSVLMKYGFNGSAPTVADAKYSRETVWTPTEVFELLNSSPSDLISESTKQFTFWDVDTSKSATAAATLAHTLSLDPTVAVNYFSAHDNETLGGVVESSIRVSHQPLEAPYPVQKADVVFVNDVKILNEYNVLENARNGATLLISSKHAAEEVEKVLNNAAKKSIAEKKVRLSTVDYEAIGENPETLGRTQTMVQQIAFWKTAYPQLTLNEITTKIVTANGVDTELVAATVASLIEKVAEIGLSSASVPEEWAKVDQTVELSSSFVYPTSFTANKLAGTIEQELNVVPESLTWVDAAKKVTFKEAYGVQSELRPDLSVKNFVSKVQVNERVTPADYDRHIFHLELDITGTGLTYAIGEALGVHAPNSTEQVNEFIEWYGLDPHEIVSIPAREDGDVYEEAKTTYHVLKDNLDIFGKPPKKFYESLATYATNPKEKSHLEKLASAEGAAELKKRAEEDFDTYADILHEFSSAHPTIAQLVEIVAPLKRREYSIASSQKVHPNAVHLLIVVVDWVDSRGRKRFGQCSKFLSGLSAGDEVVVSVKPSVMKLPHDTKAPIIMSGLGTGLAPFKAFLEEKAWQKAQGYEIGDIYLFLGSRHQRQEYLYGELFEAYKNAGILTYIGAAFSRDQPQKIYIQDRIKQAKEKLIDAFVTKGGSFYLCGPTWPVPDISGALADIVATEAATRGETIDAAREIENLKEQERYILEVY
SIO_010081: AWJ20_2017
subclass of: SO_0000673
so part of: AWJ20_2017
location: complement(142679..145846)
location: region:142679-145846:-1
so has part: feature:142679-145846:-1:exon

XP_018736906.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:142679-145846:-1:exon

AWJ20_2018
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: VID28
locus tag: AWJ20_2018
so part of: sequence
location: <148020..>150236
location: region:148020-150236:1
so has part: feature:148020-150236:1:exon
subclass of: SO_0000010

30033884
type: Gene
SIO_000068: ncbigene

position:148020:1
position: 148020
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:150236:1
position: 150236
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:148020-150236:1:exon

AWJ20_2018
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: VID28
locus tag: AWJ20_2018
product: glucose-induced degradation complex subunit VID28
transcript id: XM_018878944.1
SIO_010081: AWJ20_2018
subclass of: SO_0000673
so part of: AWJ20_2018
location: <148020..>150236
location: region:148020-150236:1
so has part: feature:148020-150236:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:148020-150236:1:exon

AWJ20_2018
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: VID28
locus tag: AWJ20_2018
note: GID Complex subunit, serves as adaptor for regulatory subunit Vid24p; protein involved in proteasome-dependent catabolite degradation of fructose-1,6-bisphosphatase (FBPase); localized to the nucleus and the cytoplasm; GO_component: GO:0034657 - GID complex [Evidence IDA] [PMID 16872538]; GO_component: GO:0034657 - GID complex [Evidence IDA] [PMID 18508925]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030437 - ascospore formation [Evidence IMP] [PMID 12586695]; GO_process: GO:0045721 - negative regulation of gluconeogenesis [Evidence IMP] [PMID 12686616]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 12586695]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12686616]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 15358789]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence IMP] [PMID 15358789]
codon start: 1
product: glucose-induced degradation complex subunit VID28
translation: MIPTNSIRDQLRATDESTQLTGLKRLKNTIIGHTDQKELLCTDDVINPLLSLLANGPLSVSLQASIVLGSFAHGSESTVQKLLRYPVIQTVITTINSVVCPDVGTNEVLSPSPELISSCLRILVTILQAQPAVGVIAQYPEIIDILTILLSGDDCPSDIVLQTCKLIPLLSPRKTASLTRLPSLAPYLLKRISNHMAQGGHRTQLVSRNSPLEAALSAVSQILTEKQARSVLELTASNVISINSKAPAFSESSNDFLLGLVHLTRADDIGIRLTAVELLSKLQNYASSPVQRDIIARNLLPTLVPMFDLLGTDPRVSLTLSYICRDNEKHASLAVEIGLVKKIITVLKAKDIASWKDREIIENNLYALAGIGIHRDSLRMEIVEAGALTYITNIISLKPAAESSSADISSIRKVKISACHVLRALSRSVALIRTSLASTDIVDGIVDLYTESEPSPELNDGIMSDESSFEVIEREQQREDQLEVRTAVMAAICNLILEFSPVQKTIFEKGALDLIIDGAHSDYASLRLNSIWALKHAIFEANRDTKSMALSKLEPSYLLRLCNDSIIEIQEQSLDFIRNFLCRNYQGVDYIFESIGKETLFELIEDKIDLHEQFPQVLTPAIYILVHIAAGTDEHRDIVAEQESVLSKLIPLMTHPLADVRTAIVWLIINLTWLEEPDNSPRREVCKIRAERLARLGFKDMLDKLSQDPTLDVRERTKTALYQFDELFGRGSSNYVVS
SIO_010081: AWJ20_2018
subclass of: SO_0000673
so part of: AWJ20_2018
location: 148020..150236
location: region:148020-150236:1
so has part: feature:148020-150236:1:exon

XP_018736907.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:148020-150236:1:exon

AWJ20_2019
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2019
so part of: sequence
location: complement(<150344..>153412)
location: region:150344-153412:-1
so has part: feature:150344-153412:-1:exon
subclass of: SO_0000010

30033885
type: Gene
SIO_000068: ncbigene

position:150344:-1
position: 150344
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:153412:-1
position: 153412
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:150344-153412:-1:exon

AWJ20_2019
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2019
product: hypothetical protein
transcript id: XM_018878945.1
SIO_010081: AWJ20_2019
subclass of: SO_0000673
so part of: AWJ20_2019
location: complement(<150344..>153412)
location: region:150344-153412:-1
so has part: feature:150344-153412:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:150344-153412:-1:exon

AWJ20_2019
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2019
codon start: 1
product: hypothetical protein
translation: MITLSNKFYREHDGSTAKNTKTPITTSLTIDQVLENESEVKLGGKVKTKLHLFRLARLVKQIPTSPPSFTTHSRCAPASASTSNGSSVITSPQPDRVSNADNISSQTNHPPPSSLDDIQIPAVPCAPSTGINIYRSAPSPLPIFRSLKAGRNKEDRPTSSDTKYYQQPNSYPGKFNRQQSDHTVQRSIDSVTCAKTAKHCSTKEELDVLGCSSHNRIGADDCIICTCTLVTSRSCGTTNPDHNVSRLDTQSNIVNNNKNTTFNSNNNSVNRNSDKDKQQNPKTLLEFTERKSADTFPSSHPTLYNFPIKPTVDTSKVHGSPNSSVAVGNPIQTMTSVGKGGFLLSSGPLKRGSRKGSGLGSGSGSTTKTASSTGFQVPTSSSNDVGSIGTGSSGTTLPPSSPPQPSSPNAGSRPESKSLQRSKDTARMAALLMNLRYADETSNISDYGTTLPTDTRVTGSPLTSNGKLMASSLAPSNSHVPKGAPLPLLDTSFGSSHMSHPGSSSPISNANLDSVTGSNHPPSPTVISSTTRARAIRAKARLELQYEMISEYQTGRRRNVMHFPEEPDENKHDVESSDHVKTSENDNNVPSLGDRVKEKYTYNPLQVIRNRVAKKEQGNGYLHYIVNNTAWNFYWHVDVSELVSDYAWRIRYGGNMRDREGKLLYPDRYKPDIRQDQDNDTSGANTSGTGVSDPNNLSTSASKGEELIQRIKSKLSSRPPSGINSNENSDSSWSRSDISDLEDNRANHRRENRQSTSSSRRNSESPTRKVPFESVNNKGRYSTSASQRKLSISNVPLAVDETAADDSLLLEPTKNFAEADQSALTAKRVTPTSVSSTSLPSEQQQDKLAYYANELRYLDMVYELSYLQISRKPYWYVENLNQDTAESMSTEMMALTKQFEGELIPKERQYLANTEQEMRKLQFDLTQDYGSRLDSVLLDSDRILNEVNTSLSLEIRKVGMRLDKLEANAPTLQWMWKLAYMLLEWLLVAFMWLAWGVVVGMRQLRRLVALVYGIVKWLLWCS
SIO_010081: AWJ20_2019
subclass of: SO_0000673
so part of: AWJ20_2019
location: complement(150344..153412)
location: region:150344-153412:-1
so has part: feature:150344-153412:-1:exon

XP_018736908.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:150344-153412:-1:exon

AWJ20_2020
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TRS20
locus tag: AWJ20_2020
so part of: sequence
location: <154317..>154637
location: region:154317-154637:1
so has part: feature:154317-154637:1:exon
subclass of: SO_0000010

30033887
type: Gene
SIO_000068: ncbigene

position:154317:1
position: 154317
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:154637:1
position: 154637
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:154317-154637:1:exon

AWJ20_2020
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TRS20
locus tag: AWJ20_2020
product: Trs20p
transcript id: XM_018878947.1
SIO_010081: AWJ20_2020
subclass of: SO_0000673
so part of: AWJ20_2020
location: <154317..>154637
location: region:154317-154637:1
so has part: feature:154317-154637:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:154317-154637:1:exon

AWJ20_2020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TRS20
locus tag: AWJ20_2020
note: Core component of transport protein particle (TRAPP) complexes I-III; TRAPP complexes are related multimeric guanine nucleotide-exchange factors for the GTPase Ypt1p, regulating ER-Golgi traffic (TRAPPI), intra-Golgi traffic (TRAPPII), endosome-Golgi traffic (TRAPPII and III) and autophagy (TRAPPIII); mutation of conserved residues leads to defects in endocytic recycling and a block in sporulation/meiosis; mutations in the human homolog cause the spondyloepiphyseal dysplasia; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:1990070 - TRAPPI protein complex [Evidence IDA] [PMID 11239471]; GO_component: GO:1990071 - TRAPPII protein complex [Evidence IDA] [PMID 11239471]; GO_component: GO:1990072 - TRAPPIII protein complex [Evidence IDA] [PMID 20375281]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 11239471]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI] [PMID 9564032]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]
codon start: 1
product: Trs20p
translation: MASYYLAIIGTKDCPIYELEFGSYRQSGDGISKFPPEIKELSPFILHSSLDIVEDVQWTTNSLYLKSVDNFYSYMVSAFVTPGSKYTISGANLGVGPKFRLEEPAD
SIO_010081: AWJ20_2020
subclass of: SO_0000673
so part of: AWJ20_2020
location: 154317..154637
location: region:154317-154637:1
so has part: feature:154317-154637:1:exon

XP_018736909.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:154317-154637:1:exon

AWJ20_2021
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2021
so part of: sequence
location: complement(<155042..>156616)
location: region:155042-156616:-1
so has part: feature:155042-156616:-1:exon
subclass of: SO_0000010

30033888
type: Gene
SIO_000068: ncbigene

position:155042:-1
position: 155042
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:156616:-1
position: 156616
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:155042-156616:-1:exon

AWJ20_2021
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2021
product: hypothetical protein
transcript id: XM_018878948.1
SIO_010081: AWJ20_2021
subclass of: SO_0000673
so part of: AWJ20_2021
location: complement(<155042..>156616)
location: region:155042-156616:-1
so has part: feature:155042-156616:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:155042-156616:-1:exon

AWJ20_2021
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2021
inference: similar to AA sequence:KEGG_Orthology:K11560
codon start: 1
product: hypothetical protein
translation: MARPRKSDAGPNGSDVSGQPVPHTTSSNVEVTNPPKKKRGRPRKSVSREEDDGFVFKRLDSESSLNSSTAKPVSSSKKVTTLKETVHLALEQAKSQSISSSRSEPEKAKKIASKSSSSQKHSAHSSKENEKQKKRSQREHDHAHSKDSDKRQKLSKMRPRDTTSGSAIATPPPSIPSSDNHDSQPGSYDDSIAGRTSTTQVLLHDQETPVIRRNQKLRNQTTTGKRRSSLSNRGKRLSNIGNGYLADPHSDVDARDFSKHLDENLSDVQRLKQVLLWCLKRNLEVHGEDLKRKRDQSTKSTSEELTALTIARQIFEEEVVKNLVDGKISIDWHSRPENAGQANVKRIPNSLNVTAQNNLTAFQKRLEELEREKEELERNLQSVGKSRLSKERLDNLIDDNILNTLDDQTRRLFLEYKSSSTPVLEPSIQLRSFRENLPNVEVGVTQLRDGVHKIESITKAASIFIDKTMKKLSEAAAITYANNNSTQLVLTIPEANSDADRSESSLRTPVSPHDILRAISRLES
SIO_010081: AWJ20_2021
subclass of: SO_0000673
so part of: AWJ20_2021
location: complement(155042..156616)
location: region:155042-156616:-1
so has part: feature:155042-156616:-1:exon

XP_018736910.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:155042-156616:-1:exon

AWJ20_2022
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2022
so part of: sequence
location: <158301..>159746
location: region:158301-159746:1
so has part: feature:158301-159746:1:exon
subclass of: SO_0000010

30033889
type: Gene
SIO_000068: ncbigene

position:158301:1
position: 158301
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:159746:1
position: 159746
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:158301-159746:1:exon

AWJ20_2022
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2022
product: Mitochondrial distribution and morphology protein 34
transcript id: XM_018878949.1
SIO_010081: AWJ20_2022
subclass of: SO_0000673
so part of: AWJ20_2022
location: <158301..>159746
location: region:158301-159746:1
so has part: feature:158301-159746:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:158301-159746:1:exon

AWJ20_2022
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2022
inference: similar to AA sequence:KEGG_Orthology:K17775
codon start: 1
product: Mitochondrial distribution and morphology protein 34
translation: MSFKFNWSFFNKDSLLDQTSEVFKVAMNKGIKPDIIIGDMAVDKFELGTVPPSLEILEIGDLAEDKFRGIFKLEYAGDASLSIKTQVQANPLALLNAQSCRLRGAFPKIVGAACPLELPLSIFISEFKLSAIVIIVFSMARGLTLVFQNDPLESVKVSSTFDSLPGIAEFLQQEVEARLRESLRDDIPEVLHKLSQEKLVSSNRSEGMKELMTHLQHTPHSHRYSNAFAFTNDSSPIPDLFHGSDETVNGLHDLDASHSTLSIRADSMIPDCVTRSTLASFEEDLKAKAAMEEDAQRLKYQARHKGSRRYSSTSSSTSLSELGAMSPIMDAYPRLYRDVRPKKRVIKLSKTNSTISEPSTISPSTQLESPNITASTSTHCTPASPQSPPSRSTPEMSPLHSNKGSPRERGRPKRRELSFASIRSPSPIDLDFRAVLEKQKQKENLSFTLNGASEKTLSKWAINNQHQIFAPPKYEELREDL
SIO_010081: AWJ20_2022
subclass of: SO_0000673
so part of: AWJ20_2022
location: 158301..159746
location: region:158301-159746:1
so has part: feature:158301-159746:1:exon

XP_018736911.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:158301-159746:1:exon

AWJ20_2023
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SSM4
locus tag: AWJ20_2023
so part of: sequence
location: complement(<162624..>165347)
location: region:162624-165347:-1
so has part: feature:162624-165347:-1:exon
subclass of: SO_0000010

30033890
type: Gene
SIO_000068: ncbigene

position:162624:-1
position: 162624
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:165347:-1
position: 165347
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:162624-165347:-1:exon

AWJ20_2023
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SSM4
locus tag: AWJ20_2023
product: E3 ubiquitin-protein ligase SSM4
transcript id: XM_018878950.1
SIO_010081: AWJ20_2023
subclass of: SO_0000673
so part of: AWJ20_2023
location: complement(<162624..>165347)
location: region:162624-165347:-1
so has part: feature:162624-165347:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:162624-165347:-1:exon

AWJ20_2023
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SSM4
locus tag: AWJ20_2023
inference: similar to AA sequence:KEGG_Orthology:K10661
note: Ubiquitin-protein ligase involved in ER-associated protein degradation; located in the ER/nuclear envelope; ssm4 mutation suppresses mRNA instability caused by an rna14 mutation; GO_component: GO:0000837 - Doa10p ubiquitin ligase complex [Evidence IDA] [PMID 16873066]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 11641273]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 11641273]; GO_component: GO:0005637 - nuclear inner membrane [Evidence IEA]; GO_component: GO:0005637 - nuclear inner membrane [Evidence IDA] [PMID 17051211]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 11641273]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11641273]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 15252059]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]
codon start: 1
product: E3 ubiquitin-protein ligase SSM4
translation: MIVREWILLNDAFVRDLQMAGNAPVGNIANAIHNNNAQMVPQLRIPNPRIEAVRAVDENPLDIELDRLRADFGAFDAPQAERANGENVALEGRDQNVENANAIANDNANGRDGRIHRPQDFALPVNVREDDFFFGGVDDEPEDLGEVGEVEGIRDIIGLKGPIVNAFATCAAATVLSAIALACLYLLPYATGRLVVILLGESVSPILKFYKQTLESQVTWVNNIFFVFASFIDTRILASNPDFSLVKFHEAVKDLTFNLINGIPSSVNSSIMIRASITSRLLLTFLGYSISGTFLAAFISNSNLTASRTGRDMLRVLKEMGAICKVITVIGIELVLFPIFCGLLLDFSLLPLFETASIADQVNFAVKYPVISTILHWALGTCYMFIFAMFVSLCRKIMRPGVLYFVRDPNDPNFHPIKDVLDRGLMSQLAKIGLSALIYGALIVLCLGGVIYTLRYLNVEFLPVSFVSTTREHIVIMIPFCAAYFLTLPIFIRTVRNLSVMRKIWAYAFESSCSYLRLSSFILNKPVPQEQGTVHYGSIAAWFMSSKPDYSRPVTIDDIAKNGKWDGAYFVKDGGFVRAPDTDSISSKKKLNLFIPVTKDDVRLDGVEEGSESNELEKYSVVYRPPHFRIRIALLLCCIWGYGALVVMSMILIPIYTGHVMSQFLLHPIFKDMCDVFQFILGSIPLFILFYTADNWDRVKEKFLNEYNQLRQSPLASSEAASGIVHLFKLLFSILVCLVVPTAIGGILDLYISSPLYHVLSSEIVYSKSMLTKFISGVLSILLAKNVVMQHAPNSSLARSFRALSENGWIGYQNPMAATKLLLPLMSILGLAAICPPFLCWALLKIWYHDVSPETQARMYVFCYPVLVVWIALDLAIYSVRTAIKLWVTKARDDIYLVSRQLENLEH
SIO_010081: AWJ20_2023
subclass of: SO_0000673
so part of: AWJ20_2023
location: complement(162624..165347)
location: region:162624-165347:-1
so has part: feature:162624-165347:-1:exon

XP_018736912.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:162624-165347:-1:exon

AWJ20_2024
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SSM4
locus tag: AWJ20_2024
so part of: sequence
location: complement(<165903..>166142)
location: region:165903-166142:-1
so has part: feature:165903-166142:-1:exon
subclass of: SO_0000010

30033891
type: Gene
SIO_000068: ncbigene

position:165903:-1
position: 165903
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:166142:-1
position: 166142
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:165903-166142:-1:exon

AWJ20_2024
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SSM4
locus tag: AWJ20_2024
product: E3 ubiquitin-protein ligase SSM4
transcript id: XM_018878951.1
SIO_010081: AWJ20_2024
subclass of: SO_0000673
so part of: AWJ20_2024
location: complement(<165903..>166142)
location: region:165903-166142:-1
so has part: feature:165903-166142:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:165903-166142:-1:exon

AWJ20_2024
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SSM4
locus tag: AWJ20_2024
inference: similar to AA sequence:KEGG_Orthology:K10661
note: Ubiquitin-protein ligase involved in ER-associated protein degradation; located in the ER/nuclear envelope; ssm4 mutation suppresses mRNA instability caused by an rna14 mutation; GO_component: GO:0000837 - Doa10p ubiquitin ligase complex [Evidence IDA] [PMID 16873066]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 11641273]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 11641273]; GO_component: GO:0005637 - nuclear inner membrane [Evidence IEA]; GO_component: GO:0005637 - nuclear inner membrane [Evidence IDA] [PMID 17051211]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 11641273]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11641273]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 15252059]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]
codon start: 1
product: E3 ubiquitin-protein ligase SSM4
translation: MDLTSPTKDQESPGYSDHGEPSSDTNSQSSLPQSSSINEHVEPPDDDTCRICRGEASEEEPLYHPCKCSGSIKYVHQDW
SIO_010081: AWJ20_2024
subclass of: SO_0000673
so part of: AWJ20_2024
location: complement(165903..166142)
location: region:165903-166142:-1
so has part: feature:165903-166142:-1:exon

XP_018736913.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:165903-166142:-1:exon

AWJ20_2025
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TRM2
locus tag: AWJ20_2025
so part of: sequence
location: <167427..>169031
location: region:167427-169031:1
so has part: feature:167427-169031:1:exon
subclass of: SO_0000010

30033892
type: Gene
SIO_000068: ncbigene

position:167427:1
position: 167427
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:169031:1
position: 169031
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:167427-169031:1:exon

AWJ20_2025
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TRM2
locus tag: AWJ20_2025
product: Trm2p
transcript id: XM_018878952.1
SIO_010081: AWJ20_2025
subclass of: SO_0000673
so part of: AWJ20_2025
location: <167427..>169031
location: region:167427-169031:1
so has part: feature:167427-169031:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:167427-169031:1:exon

AWJ20_2025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TRM2
locus tag: AWJ20_2025
inference: similar to AA sequence:KEGG_Orthology:K15331
note: tRNA methyltransferase; 5-methylates the uridine residue at position 54 of tRNAs and may also have a role in tRNA stabilization or maturation; endo-exonuclease with a role in DNA repair; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0008173 - RNA methyltransferase activity [Evidence IEA]; GO_function: GO:0030697 - S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0051908 - double-stranded DNA 5'-3' exodeoxyribonuclease activity [Evidence IDA] [PMID 17205207]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0000014 - single-stranded DNA endodeoxyribonuclease activity [Evidence IDA] [PMID 17205207]; GO_function: GO:0030696 - tRNA (m5U54) methyltransferase activity [Evidence IDA,IMP] [PMID 10864043]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IGI,IMP] [PMID 17205207]; GO_process: GO:0001510 - RNA methylation [Evidence IEA]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0006302 - double-strand break repair [Evidence IGI,IMP] [PMID 17534700]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0006400 - tRNA modification [Evidence IDA] [PMID 10864043]; GO_process: GO:0008033 - tRNA processing [Evidence IEA,IEA]
codon start: 1
product: Trm2p
translation: MTDTGLIQANSKVTAEPVVNNDKIHPRSPSLDPTPLKKQKRVKTKRYREPPVDPISAEGVLINDIRALLKSQGISEDEITNDMKAFFSRDKSVPYPDYQVVELKISALSSVGNGIGIWESPDPEAPSSIRKRVVVVPYALVGETVKTKIYRTNKYYYESELNEVVDKSPLRDDALVRCKYFTTCSGCQYQMLPYDEQLKIKREVIVNAYAHYAPLLTSDDVPSILDTVGSPEQYNYRTKLTPHFDVPRKGRLERIPPIGFGVKGRKEVLDIEECVIGTPVINKGMVEQRKVVHENFASYKRGATILLRENIKEIEDSPSTVVCTTDSKEIVTEYVGDFKFKYPAGSFFQNNNSILPSVTSYVRDNIVLPSSGKPPKYLVDTYCGSGLFGITCSTAVEQLIGVEISKDSVEYAQKNAELNNLKNASFIVGEAEKIFDKVSDAPLETSIIIDPPRKGCDKQFLDQLLEFRPAKVVYVSCNVHSQARDIEYLLKSEVARDRSSNSGNKYIIDSIRGFDFFPQTHHVESVAVLSLKNN
SIO_010081: AWJ20_2025
subclass of: SO_0000673
so part of: AWJ20_2025
location: 167427..169031
location: region:167427-169031:1
so has part: feature:167427-169031:1:exon

XP_018736914.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:167427-169031:1:exon

AWJ20_2027
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2027
so part of: sequence
location: complement(<175785..>177227)
location: region:175785-177227:-1
so has part: feature:175785-177227:-1:exon
subclass of: SO_0000010

30033893
type: Gene
SIO_000068: ncbigene

position:175785:-1
position: 175785
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:177227:-1
position: 177227
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:175785-177227:-1:exon

AWJ20_2027
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2027
product: hypothetical protein
transcript id: XM_018878953.1
SIO_010081: AWJ20_2027
subclass of: SO_0000673
so part of: AWJ20_2027
location: complement(<175785..>177227)
location: region:175785-177227:-1
so has part: feature:175785-177227:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:175785-177227:-1:exon

AWJ20_2027
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2027
codon start: 1
product: hypothetical protein
translation: MFLKYDPDTDLLKLDLEQIPVFLHIRLAQLVLESLNCFIVVARYGSEELKSQMYQLDPNLVLEWRTNFAEILELRKAVQVYEEKSNAFGLSRVLWNKQSDLTPRSVDVDTVNFFDVPSQYPSIPSINASLDRADRSHKGDIVEKIVDGTLFGTLREARDDELPIEMVAQLSFAPIIRTQWKLANKLVMRIFKGEQDIVDHARLIEQTYFLANGELAIRLEERIFGTTTQGGLALDAQHFGMEISGSWQPTSLEINSCLSGVLEDVIRKLPGVCNEVRQAGFINFGFSEKNRQQSNLFATSVLKLTYRVPKPLSLIFNSKAIYYLDKIFQRLIMGLRLTHWLKMKRHGVYCVQNQQLRNFISCSLSSINLAIRNIWEALINKLVVMNVEEETSLEQVISEVTTALDRIFTNMISGPEEELLFSIYSVVFEPTTDDDKLRKLIVQLISQLQKQTIQANTDALIFTRIFTDQLQFSGFYERND
SIO_010081: AWJ20_2027
subclass of: SO_0000673
so part of: AWJ20_2027
location: complement(175785..177227)
location: region:175785-177227:-1
so has part: feature:175785-177227:-1:exon

XP_018736915.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:175785-177227:-1:exon

AWJ20_2028
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2028
so part of: sequence
location: complement(<178693..>178766)
location: region:178693-178766:-1
so has part: feature:178693-178766:-1:exon
subclass of: SO_0000663

30033894
type: Gene
SIO_000068: ncbigene

position:178693:-1
position: 178693
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:178766:-1
position: 178766
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:178693-178766:-1:exon

AWJ20_2028
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_2028
product: tRNA-Ile
SIO_010081: AWJ20_2028
subclass of: SO_0000673
so part of: AWJ20_2028
location: complement(<178693..>178766)
location: region:178693-178766:-1
so has part: feature:178693-178766:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:178693-178766:-1:exon

AWJ20_2029
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2029
so part of: sequence
location: complement(<178914..>179924)
location: region:178914-179924:-1
so has part: feature:178914-179924:-1:exon
subclass of: SO_0000010

30033895
type: Gene
SIO_000068: ncbigene

position:178914:-1
position: 178914
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:179924:-1
position: 179924
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:178914-179924:-1:exon

AWJ20_2029
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2029
product: Bifunctional purine biosynthesis protein purH
transcript id: XM_018878954.1
SIO_010081: AWJ20_2029
subclass of: SO_0000673
so part of: AWJ20_2029
location: complement(<178914..>179924)
location: region:178914-179924:-1
so has part: feature:178914-179924:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:178914-179924:-1:exon

AWJ20_2029
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2029
codon start: 1
product: Bifunctional purine biosynthesis protein purH
translation: MPKPIRLTASKSSRINKPSVGKKPALPLMPSDIAFLKDFDEKKSLRQARSKAQQEKLQDDGPAELEWQLQVSTIPDIVKSMRIVLDRMWAPIPEKGLGREGRGDVYHFRKSIPPLVRTTHLYAIYPDNSTYVDREIRTACEDGTVRRLVVNLVEGSDLLIESTHYYAILDEQVRKYEESLSKSEDEGSKVVTSAIVKALKIFKKLLIKNPTAISLSLSELEDVDLAKLRNNLLSLGFLTLQSGQMDSFVISVPNIGSYLRLVASSRKWIIRNLDKMSWKELLESTLQERWESNKTYWYDFKGCLLEWVLYDCFGGGWCEPFKTPVGRGWKLTGKKG
SIO_010081: AWJ20_2029
subclass of: SO_0000673
so part of: AWJ20_2029
location: complement(178914..179924)
location: region:178914-179924:-1
so has part: feature:178914-179924:-1:exon

XP_018736916.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:178914-179924:-1:exon

AWJ20_2030
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2030
so part of: sequence
location: <180932..>183247
location: region:180932-183247:1
so has part: feature:180932-183247:1:exon
subclass of: SO_0000010

30033897
type: Gene
SIO_000068: ncbigene

position:180932:1
position: 180932
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:183247:1
position: 183247
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:180932-183247:1:exon

AWJ20_2030
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2030
product: hypothetical protein
transcript id: XM_018878956.1
SIO_010081: AWJ20_2030
subclass of: SO_0000673
so part of: AWJ20_2030
location: <180932..>183247
location: region:180932-183247:1
so has part: feature:180932-183247:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:180932-183247:1:exon

AWJ20_2030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2030
inference: similar to AA sequence:KEGG_Orthology:K01127
codon start: 1
product: hypothetical protein
translation: MEDWIHEFEKADKQDKGQVNIGPRSIDSVVRNLKMNAFQRVLNAFKYKERGRVHNSGAKDESDNELALKAFIFGILTHQVADISWHSLGIQQGLLRMLANREFNGDVAEAHSVLDTGGDMIYVRRMLQSGLNLDWIQGEWKYPTADILEIISRAGYSVTSSQLDYCMFRGKAALGAELQLAVSAFAPYAQRSPLLFEHIDDYFLGGVTEMSTATRHCSYSLAEWFANQTTPADPWSVCEVYEGMKGKSYRNSNFLYENETLPTEDYTTQSTPYLDIPLAQSISSDTKLEISAHQNIFGDSDSKVLAELATVISTGVPNGAFGTSLTIGKFLNDELCLAISAPYESVTFGFGRTAKEVPKGSVYVVELSQLVVSNNNIAVKTPAKMITLEMPEEGPPYQFNERFGAKMTKITLAGFDVLIVSRPGTSRLSFFLENRNIFNIHWGSASVKYGSFGDKLAGESLVVGDVDGDGIDDLVVGSPYSDISGRPQAGEVHVINGLSLQSIFSVAVESRSRVPLEFDIKDVAEIVLHLPSLTSSPGYSLFGSKVAVVSRGSTNYLLIGAEGVGKVFAFDSKKDFKYVFVLSSNVNTGANFGGKLLVGNNDGWIAVGSTTEDVHSDRTGRVKCSQCGAIYLFRIKEIGVIEDLSLYNSTDELTAYEQGYLGFKTRKGMESGSFSRFGHEGTIIDKYLYTSSPFGQNERGQVWRLDLSKHGKGNFELLIEESPWPYSNGFGTSLAGIQQNGETFLASGMPYYGTNERGWLQGAVALYHLKD
SIO_010081: AWJ20_2030
subclass of: SO_0000673
so part of: AWJ20_2030
location: 180932..183247
location: region:180932-183247:1
so has part: feature:180932-183247:1:exon

XP_018736917.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:180932-183247:1:exon

AWJ20_2031
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SUL1
locus tag: AWJ20_2031
so part of: sequence
location: <186176..>188560
location: region:186176-188560:1
so has part: feature:186176-188560:1:exon
subclass of: SO_0000010

30033898
type: Gene
SIO_000068: ncbigene

position:186176:1
position: 186176
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:188560:1
position: 188560
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:186176-188560:1:exon

AWJ20_2031
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SUL1
locus tag: AWJ20_2031
product: Sul1p
transcript id: XM_018878957.1
SIO_010081: AWJ20_2031
subclass of: SO_0000673
so part of: AWJ20_2031
location: <186176..>188560
location: region:186176-188560:1
so has part: feature:186176-188560:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:186176-188560:1:exon

AWJ20_2031
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SUL1
locus tag: AWJ20_2031
inference: similar to AA sequence:KEGG_Orthology:K14708
note: High affinity sulfate permease of the SulP anion transporter family; sulfate uptake is mediated by specific sulfate transporters Sul1p and Sul2p, which control the concentration of endogenous activated sulfate intermediates; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IMP,ISS] [PMID 7616962]; GO_function: GO:0008271 - secondary active sulfate transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015116 - sulfate transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015116 - sulfate transmembrane transporter activity [Evidence IGI,IMP] [PMID 7616962]; GO_process: GO:1902358 - sulfate transmembrane transport [Evidence IEA]; GO_process: GO:0008272 - sulfate transport [Evidence IEA]; GO_process: GO:0008272 - sulfate transport [Evidence IGI,IMP] [PMID 7616962]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 7616962]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Sul1p
translation: MSTGSDHLFSSSGNGANDEAEPSYISIPQYDEPPVSIKDFGREVFADTPKKIKEYLLSLFPIIRWIYRYNFVWLYGDLIAGITVGAVLVPQSMSYAKIATLPPQIGLYSSFVGVMIYCFFATSKDVSIGPVAVMSLQTSKAIAHVIHKHPEYANDPTYIALGLSLLCGAIALGIGLLRLGFILEYIPMPAVLGFMTGSAFTIAAGQVPGLMGISKLFNTRDATHLVVIHTLQNLKHSNLDAAFGLVSLFILYFSRWLFAFLGKRYPKYERVFFFGSVLRNAFVIIFSTLISWGICHHHKNPKKFPISVLGTVPRGLQNVGYHTIDQNLASALAPELPISTVILLMEHIAIAKSFGRVNDYRINPNQELIAIGTTNMIGTFFNAYPATGSFSRSALKSKCGVRTPLAGIFTGIVVIVAIYGLTGTFYWISNASLSAVIIHAVTDLMAPWYVTWKFWKSSPVETIVFLGAVFLSVFVSLESGIYFSFAACLVFLLLRISFPTGQFLGRVEVVEYLNPNYSEANGAIEETSRIDNDPEDKKKYEVVRQTSSSGSANPKPTTVKKYTWVPLNHHNINKDVLIQPPPPGVFVFRPGESFTFPNAARQLEILVQEVRKQTRKGGVQQHQLTLGERPWNDHGPRHKVYDEGFVDERPLLRAVVFDFSASPHIDLNGVQALADIRQELNKYANREVEYHFVGILSVWSRRALMAHSFGGDNSETRPERHYVEISLRQAAGVDGSATEAVEEESKKKNKYRDEEERDTVSQLSNDGSYIPIIATNTPFFHLEIPNLEFPESRE
SIO_010081: AWJ20_2031
subclass of: SO_0000673
so part of: AWJ20_2031
location: 186176..188560
location: region:186176-188560:1
so has part: feature:186176-188560:1:exon

XP_018736918.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:186176-188560:1:exon

AWJ20_2032
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: YJU2
locus tag: AWJ20_2032
so part of: sequence
location: complement(<188760..>189698)
location: region:188760-189698:-1
so has part: feature:188760-189698:-1:exon
subclass of: SO_0000010

30033899
type: Gene
SIO_000068: ncbigene

position:188760:-1
position: 188760
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:189698:-1
position: 189698
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:188760-189698:-1:exon

AWJ20_2032
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: YJU2
locus tag: AWJ20_2032
product: Yju2p
transcript id: XM_018878958.1
SIO_010081: AWJ20_2032
subclass of: SO_0000673
so part of: AWJ20_2032
location: complement(<188760..>189698)
location: region:188760-189698:-1
so has part: feature:188760-189698:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:188760-189698:-1:exon

AWJ20_2032
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: YJU2
locus tag: AWJ20_2032
note: Essential protein required for pre-mRNA splicing; associates transiently with the spliceosomal NTC ('nineteen complex') and acts after Prp2p to promote the first catalytic reaction of splicing; GO_component: GO:0071006 - U2-type catalytic step 1 spliceosome [Evidence IDA] [PMID 17515604]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0000384 - first spliceosomal transesterification activity [Evidence IDA] [PMID 17515604]; GO_process: GO:0000349 - generation of catalytic spliceosome for first transesterification step [Evidence IDA] [PMID 17515604]
codon start: 1
product: Yju2p
translation: MGDRKTVNKYYPPDFDPSKITKKRKSIKESAAASLQTVRLMAPFSMRCTTCGEFIYRGKKFNAKKQPTGESYLGIKIIRFYIRCPRCAGEIRFKTDPKIGDYVTEQGAERNREPWREKAEEEEDLEQRLDRLEREEIEQQEREQLRKQYGIAGAVTAKKDQNNPDADIMAELESKVLDSKREMEIQDELDAIRTRNARIEMAASGGGLLERAQEVVQSAVVGKKKLEEEEDEEAARKAFKRTSDGVIIRQARPPDDTGPSATSTSNVSSTVPIKPTVPNASLFNPTSVLKKPVKGGKKLNALGVVVKKKSLV
SIO_010081: AWJ20_2032
subclass of: SO_0000673
so part of: AWJ20_2032
location: complement(188760..189698)
location: region:188760-189698:-1
so has part: feature:188760-189698:-1:exon

XP_018736919.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:188760-189698:-1:exon

AWJ20_2033
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TRK2
locus tag: AWJ20_2033
so part of: sequence
location: <190962..>193301
location: region:190962-193301:1
so has part: feature:190962-193301:1:exon
subclass of: SO_0000010

30033900
type: Gene
SIO_000068: ncbigene

position:190962:1
position: 190962
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:193301:1
position: 193301
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:190962-193301:1:exon

AWJ20_2033
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TRK2
locus tag: AWJ20_2033
product: Trk2p
transcript id: XM_018878959.1
SIO_010081: AWJ20_2033
subclass of: SO_0000673
so part of: AWJ20_2033
location: <190962..>193301
location: region:190962-193301:1
so has part: feature:190962-193301:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:190962-193301:1:exon

AWJ20_2033
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TRK2
locus tag: AWJ20_2033
note: Component of the Trk1p-Trk2p potassium transport system; contributes to K(+) supply and maintenance of plasma-membrane potential; TRK2 has a paralog, TRK1, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence TAS] [PMID 2072919]; GO_function: GO:0008324 - cation transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015079 - potassium ion transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015079 - potassium ion transmembrane transporter activity [Evidence IDA,ISS] [PMID 2072919]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0030007 - cellular potassium ion homeostasis [Evidence IDA] [PMID 2072919]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0071805 - potassium ion transmembrane transport [Evidence IEA]; GO_process: GO:0006813 - potassium ion transport [Evidence IEA]; GO_process: GO:0042391 - regulation of membrane potential [Evidence IMP] [PMID 21424545]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Trk2p
translation: MTFLCSIILYPGGNIRYIDALFIGAAGCTQAGLNTVQLNELYTYQQIFLMIFPFLTTPIFIHSSVVFLRLHWFEKHFKDVKINSKIQSKLRRTATMARAESRDHEIGLEPLKWNGEYSKRDSNPPVPTSNNTEEVSGLHVPPASDIRFGDLPQPRRQKSIAPQDMYKSINMMQRNRRLSNDLNDGPALVIKSPRVMDEENELKEKMRLAATVTGQNVDSSPSSSGNASTEHESVDLGERIRPSISYAVSPERSNYDIDGIKLDRRSRTLSTSNVPNENQRSQHERTGSKASVTRGTRRFSRSRTLDRIFNRTLSNDGPTTKVMSTNYLSWQPTVGRNSAFVDLTEEQKEELGGVEYRSLKLLAKVLVAYYMGFYLFGLVTFWPYASLRNLLKDHFTSEGFTSTLWAWFTSVSAFSDTGFTLTPESMAFFQREAYIPLLSAFLIVIGNTGFPVLLRFIIWIAFKFTPRFGRAHESLGFLLDHPRRCFTLLFPSSATWWLLAVLVILNSVDLVLFLVLDLTSKAITEIPVGYRIVCGLFQAIATRTAGFTIVSMSDVHPAVRVSYVIMMYISVLPIAISVRRTNVYEEQSLGVYYPENDGEDPEAKHHSYVGAHLKKQLYFDLWFICLGLFIICIAEGAKLDNNEFQIFDVLFEIVSAYGTVGLSMGAANTNLALSGAFNVIGKLVIIALMIRGRHRGLPYALDRAIILQGDKIQRTDSIQETRTRNKRLMSMSIPINDDVGLTTARSNDTGYMRERPGLRTETSTLDRFPSQAVSDGEDD
SIO_010081: AWJ20_2033
subclass of: SO_0000673
so part of: AWJ20_2033
location: 190962..193301
location: region:190962-193301:1
so has part: feature:190962-193301:1:exon

XP_018736920.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:190962-193301:1:exon

AWJ20_2034
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TPO1
locus tag: AWJ20_2034
so part of: sequence
location: <194218..>195855
location: region:194218-195855:1
so has part: feature:194218-195855:1:exon
subclass of: SO_0000010

30033901
type: Gene
SIO_000068: ncbigene

position:194218:1
position: 194218
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:195855:1
position: 195855
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:194218-195855:1:exon

AWJ20_2034
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TPO1
locus tag: AWJ20_2034
product: Tpo1p
transcript id: XM_018878960.1
SIO_010081: AWJ20_2034
subclass of: SO_0000673
so part of: AWJ20_2034
location: <194218..>195855
location: region:194218-195855:1
so has part: feature:194218-195855:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:194218-195855:1:exon

AWJ20_2034
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TPO1
locus tag: AWJ20_2034
note: Polyamine transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; recognizes spermine, putrescine, and spermidine; catalyzes uptake of polyamines at alkaline pH and excretion at acidic pH; during oxidative stress exports spermine, spermidine from the cell, which controls timing of expression of stress-responsive genes; phosphorylation enhances activity and sorting to the plasma membrane; GO_component: GO:0033101 - cellular bud membrane [Evidence IDA] [PMID 13679573]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IMP] [PMID 11171066]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12562762]; GO_component: GO:0005886 - plasma membrane [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 9920864]; GO_process: GO:1902047 - polyamine transmembrane transport [Evidence IMP] [PMID 24136413]; GO_process: GO:0015847 - putrescine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0015848 - spermidine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0015848 - spermidine transport [Evidence IDA,IMP] [PMID 15637075]; GO_process: GO:0015848 - spermidine tra…
codon start: 1
product: Tpo1p
translation: MSSGNSADASGIGDSSPNQSSRNSEEFPLDVEKVISVNGGFKKNGEEQDPSPGPSHKQENADTDSNENTDLLDPRQYDENIFLVTFSKGDKENPQNWSLRKKSLHTAFYGLTTFAAQFNSAVMSPTVPHLMDSFGISREVAILGTSLYVLGIAFGPSVFAPYSEMNGRKMGVMLPFFISLIFTAGTASSDNISAILCTRFFAGFFAGAPVVSSGGVLADIWDPAIRGVALIFYAVFVTAGVTFGSILSSVVTSGSDTDWRWSCWLIVIIGGVILFFDVILLSETYAPVILAKRASNLRINTHQWAYHAKHDEWKLDLKEFLTLHLLRPFAMFATPIVFCIAMFASFVFGVLYLVITSVPITFQITKGWEGTVATLPMVALFLGLITGSGLNVWSGLRYAKLVRANNNKPLPEQRFPVMMMFGWLMPAGTFIFAWTLRPEIHWIVPMIGIYLLGTGFIVIFQGCLNYLVDTFTRFAASAIAANTFVRSIFGGIFPLFGDTMFINLGVNWGGSLVGFIALALTPIPYIFYLYGEKLRSRNPYSKLVS
SIO_010081: AWJ20_2034
subclass of: SO_0000673
so part of: AWJ20_2034
location: 194218..195855
location: region:194218-195855:1
so has part: feature:194218-195855:1:exon

XP_018736921.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:194218-195855:1:exon

AWJ20_2035
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PBS2
locus tag: AWJ20_2035
so part of: sequence
location: <197062..>199857
location: region:197062-199857:1
so has part: feature:197062-199857:1:exon
subclass of: SO_0000010

30033902
type: Gene
SIO_000068: ncbigene

position:197062:1
position: 197062
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:199857:1
position: 199857
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:197062-199857:1:exon

AWJ20_2035
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PBS2
locus tag: AWJ20_2035
product: mitogen-activated protein kinase kinase PBS2
transcript id: XM_018878961.1
SIO_010081: AWJ20_2035
subclass of: SO_0000673
so part of: AWJ20_2035
location: <197062..>199857
location: region:197062-199857:1
so has part: feature:197062-199857:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:197062-199857:1:exon

AWJ20_2035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PBS2
locus tag: AWJ20_2035
inference: similar to AA sequence:KEGG_Orthology:K11227
codon start: 1
product: mitogen-activated protein kinase kinase PBS2
translation: MSVYHGTSNNDYLAVDRRESSSSSPMPPTPRPSISDQGCGSSVNNDEGLTVSSNAGSSSVPLPLPSPGIVFSKQEDFEEYQTDSRQAQAYHNGVSANVALPRTSSQAKPRQSQASANSLSRHTYNETYSSSMNSLNSFTSSTSNHLPPRVSSYNNSSTNISGLTRSTSSSAGSSSSSTPKPMLNSRSTSTGARFQRVNRQASHGNTISPDETIAEALSAKLKSNLALSTSPSASPPPVSVASSPSLSTLSPSSANGTNSPALGSTPPTQWAASAIMNGGIASVSPDVHARILTFQQSRQSRSNSGSNAALNFIPGSVPLLPNDGAPAGSPSSPNLVGLTGGNMCTPQAIKDNLSRSSSSSSSSSYSNYSRTISSYSSPIVSPHPEDKGSEKLPPARQLAQPLQLSQKTSNLQIKIPSTIEDSDGTDSGDDHGTANPTIESAATIVPSADSSLNTPQSATQTGKPFSGALFINSVSQGTKIPTQRPSLSERRGLKLSDMSQPPPIPKLKSHPLLPSTGTGRSTSLLDRRMQASAPAGLFPKWSGKLNMDPSSERATPNISGGEGDQANGADSGSGPGAQAPVVLRPPGVGGFNRQNSLFSNYKKYVDVKSGSLNFAGKASLHSKGVDFSSGSSFRISIDEFEPMGELGRGNYGTVTKVLHKPTKVIMAMKEIRLELDETKFRQILMELEILHKCDSPYIVDFYGAFFVEGAVYMCMEYMDGGSLNNIYQGGVEDRYLAIITDSVVRGLKKLKDEHNIIHRDVKPTNILVSTSGKVKLCDFGVSGNLVASIARTNVGCQSYMAPERIRSKNPNEAITYTVESDIWSLGLSLIEIARGEYPYPADTHNSIYSQLMAILDGEPPCLPDDKYSPEARAFVAQCLNKTARLRPSYAELLKHPWLVNIEQELAHSPTLEVEFGAFVKRSVERNNHREN
SIO_010081: AWJ20_2035
subclass of: SO_0000673
so part of: AWJ20_2035
location: 197062..199857
location: region:197062-199857:1
so has part: feature:197062-199857:1:exon

XP_018736922.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:197062-199857:1:exon

AWJ20_2036
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ANR2
locus tag: AWJ20_2036
so part of: sequence
location: <200119..>201759
location: region:200119-201759:1
so has part: feature:200119-201759:1:exon
subclass of: SO_0000010

30033903
type: Gene
SIO_000068: ncbigene

position:200119:1
position: 200119
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:201759:1
position: 201759
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:200119-201759:1:exon

AWJ20_2036
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ANR2
locus tag: AWJ20_2036
product: Anr2p
transcript id: XM_018878962.1
SIO_010081: AWJ20_2036
subclass of: SO_0000673
so part of: AWJ20_2036
location: <200119..>201759
location: region:200119-201759:1
so has part: feature:200119-201759:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:200119-201759:1:exon

AWJ20_2036
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ANR2
locus tag: AWJ20_2036
note: hypothetical protein; may have a role in lipid metabolism, based on localization to lipid droplets; predicted to be palmitoylated; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]
codon start: 1
product: Anr2p
translation: MSGHPRKKLAIGAFLIKFDMRTGNSLIWSKSQPGIEIDWEGVEFMAMPSGLHSRQSDVIRFVLSNPLERVTRTGSTRDRLLGDEAFGYLKNNIEGIAVFNQNFHRGDATTTRINVRSTIQMYSLGVLCTKSDSEISSKCWGFVDILTELLTTFMNLNQDNHQVHETLDFRPFESLLQYDDNGELQTLSLSPPRLSAKPLNLAPHHPILSTTELLVTYGPLIFEIWKAALLRDKILLMDKSNSISVDDMCKFVYIISVFGTVPNDVFDLIPRNKQHSLSTATNPIYNVNVSDITSLSHLKHFIATTTDEILLEKEYLYNMTVVKTGDRAIAATTSTTDFYGNLNTMPISAGFHDKRRFQILISGLGIETPHHTSGQSILAHVCSNISSLFSLTSLYGLLWWATAGEQANSDTDRYLEGLPLLTQTQVESSSHVAGQRASSYATESPYFNAISELSPPQPSATMEPWQISVIGYFQAKTRRIFETVASIVESQDQDQSETSLQTVISIEPPDLMDMGLDPISLRDHEFVVKFISLWWGRPARVNHVCC
SIO_010081: AWJ20_2036
subclass of: SO_0000673
so part of: AWJ20_2036
location: 200119..201759
location: region:200119-201759:1
so has part: feature:200119-201759:1:exon

XP_018736923.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:200119-201759:1:exon

AWJ20_2037
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: LHS1
locus tag: AWJ20_2037
so part of: sequence
location: complement(<201957..>204599)
location: region:201957-204599:-1
so has part: feature:201957-204599:-1:exon
subclass of: SO_0000010

30033904
type: Gene
SIO_000068: ncbigene

position:201957:-1
position: 201957
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:204599:-1
position: 204599
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:201957-204599:-1:exon

AWJ20_2037
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: LHS1
locus tag: AWJ20_2037
product: Hsp70 family chaperone LHS1
transcript id: XM_018878963.1
SIO_010081: AWJ20_2037
subclass of: SO_0000673
so part of: AWJ20_2037
location: complement(<201957..>204599)
location: region:201957-204599:-1
so has part: feature:201957-204599:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:201957-204599:-1:exon

AWJ20_2037
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: LHS1
locus tag: AWJ20_2037
inference: similar to AA sequence:KEGG_Orthology:K09486
note: Molecular chaperone of the endoplasmic reticulum lumen; involved in polypeptide translocation and folding; nucleotide exchange factor for the ER lumenal Hsp70 chaperone Kar2p; regulated by the unfolded protein response pathway; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IEA]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IDA] [PMID 8654361]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IDA] [PMID 8887673]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IDA,IMP] [PMID 19759005]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0000774 - adenyl-nucleotide exchange factor activity [Evidence IDA] [PMID 14704430]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IMP,IPI] [PMID 10409721]; GO_function: GO:0051082 - unfolded protein binding [Evidence IGI,IMP] [PMID 8654361]; GO_function: GO:0051082 - unfolded protein binding [Evidence IGI,IMP] [PMID 8887673]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0031204 - posttranslational protein targeting to membrane, translocation [Evidence IMP] [PMID 8654361]; GO_process: GO:0031204 - posttranslational protein targeting to membrane, translocation [Evidence IMP] [PMID 8887673]; GO_process: GO:0006986 - response to unfolded protein [Evidence IGI,IMP] [PMID 8654361]; GO_process: GO:0006986 - response to unfolded protein [Evidence IGI,IMP] [PMID 8887673]
codon start: 1
product: Hsp70 family chaperone LHS1
translation: MHIKLFKSTFLGFLFILFTSLQLIQCAVLGIDFGQEYTKGSLVAPGAPFEVIMTSDSKRKDLSGITFKKAPGSGSGTFERIYGNSAAAVIQRFPATSPFYLKPLLGQSLDSPAAKWYSEQFPAVKLVPSNNNRSTIAIQIFDDIYSVEEIVAMSFSEIKGRASKVLTQALSGSSGYLKDTALSVPPYYSIQQRKALQDAVEIADLRLISLVNDGAAVAANFAASRQFENDKKEHHIIYDIGAGSTTATLVEIYQADLVPEGSPFPRSHTVIDVIGVGYDTELGGHVLTQSVRNILIDKFLEANPKVKRNDLLNDHRALARFWREAERVKFVLSANSETQSSIESAYNDISLKTHVSRVEFEDANRHLFDKVPAPILDALNNPLNNSTEAFDFSKVSSIILTGGSTRIPIVQQELLSLINARDPTEQVTLAKNVNADEAAVLGTALRGVGISKIFRSKDMAVIDRAIWDYSAEIDGEVATIFPRGTPLDSKFVLPFDSSKDDFKLVLYENGKEFVRHNINGVQSAIKRLLNDPHRECISNVSVEAEFHLSNSRIVELLGTYAKCESIEKVVSTESSQQSSTSDSADVESSSETDNASSGTTSSATTASVSPTAKPPKVVKKSVSMTNSFDGPRPMGSASKQSALSRLRALDRLDADRLSREEARNTFESRLYRVRELLESEESAQQKLAEFGEWFDYDSEKASIKVLQEKLAELNALADSYNKETTVQQIELPKETGSVVEPTMAGPEIILEPPVVQEQQPFENEKLADVYQGIKEVAEMLDQLGIDIPNREAVAQILGGSTVPDSTSNLKGIAELLRSKLQAANLDGSEPADSGDVESRLNDLRHMIKKAADIIKTESSATPSVSISTSPSPKNPQHDDL
SIO_010081: AWJ20_2037
subclass of: SO_0000673
so part of: AWJ20_2037
location: complement(201957..204599)
location: region:201957-204599:-1
so has part: feature:201957-204599:-1:exon

XP_018736924.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:201957-204599:-1:exon

AWJ20_2038
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: URA2
locus tag: AWJ20_2038
so part of: sequence
location: <206591..>213319
location: region:206591-213319:1
so has part: feature:206591-213319:1:exon
subclass of: SO_0000010

30033905
type: Gene
SIO_000068: ncbigene

position:206591:1
position: 206591
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:213319:1
position: 213319
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:206591-213319:1:exon

AWJ20_2038
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: URA2
locus tag: AWJ20_2038
product: bifunctional carbamoylphosphate synthetase/aspartate transcarbamylase
transcript id: XM_018878964.1
SIO_010081: AWJ20_2038
subclass of: SO_0000673
so part of: AWJ20_2038
location: <206591..>213319
location: region:206591-213319:1
so has part: feature:206591-213319:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:206591-213319:1:exon

AWJ20_2038
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: URA2
locus tag: AWJ20_2038
inference: similar to AA sequence:KEGG_Orthology:K11541
note: Bifunctional carbamoylphosphate synthetase/aspartate transcarbamylase; catalyzes the first two enzymatic steps in the de novo biosynthesis of pyrimidines; both activities are subject to feedback inhibition by UTP; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11015727]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 11921093]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016597 - amino acid binding [Evidence IEA]; GO_function: GO:0004070 - aspartate carbamoyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004070 - aspartate carbamoyltransferase activity [Evidence IDA] [PMID 10446140]; GO_function: GO:0004070 - aspartate carbamoyltransferase activity [Evidence IMP] [PMID 4550660]; GO_function: GO:0004088 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [Evidence IEA]; GO_function: GO:0004088 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [Evidence IDA] [PMID 5776390]; GO_function: GO:0016743 - carboxyl- or carbamoyltransferase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0044205 - 'de novo' UMP biosynthetic process [Evidence IEA]; GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IEA]; GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IDA] [PMID 181668]; GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IMP] [PMID 4550660]; GO_process: GO:0070409…
codon start: 1
product: bifunctional carbamoylphosphate synthetase/aspartate transcarbamylase
translation: MSSDKIEELPVVSATPSLPIFPPLHNTDKLVTLELKNGISVQGYSFGADKSVAGELVFQTGMVGYPESITDPSYEGQILVITFPLVGNYGVPSRDEMDELVPQLPRYFESNRIHVAGLVVASYTEEYSHFLAKSSLGTWLKEEGIPAIYGVDTRGLTKLIRTQGSTLSRIRLQKEKVNPALSWDENFEEVEYDDPNVKNLVARVSIKEPVLYKPASSVTPVVDSTGKTLRILAIDVGMKYNQVRCFVNRGVELKVVPWDYDFVGAGEQYDGLFVSNGPGDPATLTSVVKRLETVVEQAKTPIFGICLGHQLLASASGASTLKLKFGNRGHNIPATNLISGRCYITSQNHGYAVDVNTLKEGWKELFVNANDGSNEGIYHTSKPIFSVQFHPESTPGPRDTEFLFDVFINTVLKHKNAGGKPIGPVEFPGGTIEENRAKHPRVHAKKVLVLGSGGLSIGQAGEFDYSGSQAIKALKQEGIYTILINPNIATIQTSKGLADKVYFLPVNADFVRKVIKYENPDAIYVTFGGQTALNVGIQLKDEFESLGVKVLGTPIDTIITTEDRELFARSMEEIGEKCAKSATASTTAEALEVVKEIKFPVIVRAAYALGGLGSGFAENEEQLVALCQKAFAASPQILIERSMKGWKEIEYEVVRDAFDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAVNVIRHLGVVGECNIQYALNPFSKEYCIIEVNARLSRSSALASKATGYPLAFIAAKLGLNIPLNEIKNSVTKVTCACFEPSLDYVVVKIPRWDLKKFTRVSKELSSSMKSVGEVMSIGRTFEEAIQKAIRSTDYQNLGFNATEALMSIDIDDELQTPSDQRLFAIANAFDSGYTVDKVWSLTKIDKWFLHKLENLIKFAKMMEQFQSKTIPSTTMRQAKQLGFEDRQIAKFVSSNELSIRRLRVEAGITPFVKQIDTVAAEFPAFTNYLYLTYNADSHDIDFNDNGVMVLGSGVYRIGSSVEFDWCAVRAVRTLREQGTKTIMVNYNPETVSTDYDEADRLYFEVINLERVLDIYQLEQSAGVVISMGGQTSNNIALTLHRENVKILGTSPDMIDSAENRYKFSRMLDKIGVDQPAWKELTSIEEAEAFADKVSYPVLVRPSYVLSGAAMNTVYSRDDLESYLKQAVEVSRDYPVVITKYIENAKEIEMDAVAKDGKLVMHVVSEHVENAGVHSGDATLIVPPQDLSAETVKRIVEATAKIGQALNVSGPYNIQFIAKDNEIKVIECNVRASRSFPFVSKVLGVDLIEMATKVIAGVPIQPYPLQQLPEDYVAIKVPQFSFSRLSGADPVLGVEMASTGEVACFGRNKYEAYLKSLIATGIKPPKKNILLSIGSFKEKTELLPSVKKLHELGYKLFATAGTADFIQEHGIPVQYLEVLNEGEDEKSEFSLTQHLANNLIDMYINLPSSNRFRRPASYMSKGYRTRRMAVDYAIPLVTNVKCAKLLVEALALNIPLEVSSIDSQSSHRLLSLPGLINIATFVPSLLSAGGSPDFEKVSEASLKAGFTITRILPTGVDGSITDALSLLTAQENTRGKSAVDFNLSIAATGDNASQLVKASPNVGSLVIPFNYFNNNLDKVATVSEHFNVWPTSKPIVTDASSTDLASILLLASLHNRPVHVTNVLKKADLALISMAKEKGLKVTCDVSIHALFLSQVEFPGCSHLPTKEDQEGLWEGLESIDIFAVGVLPSQLAKSLGLTVEAGVGIADALPLLLTAVRENKLTVEDIVLRLSTNPKKIFDLHDQSGTTVEVDLDRQTTVSSFYSKPLYGTVERVTYNDKTVVLEGKIVVSDFHLGKDVSGHSNAAQVVPASPLVKGGAVFASPRPASPTGVSGFNAQARKMSFNAVSVVAPGGRADLDSALVLEDDDKSKGPTLKLVTEPQLPSALRNVIRKNNPFLRRHVTSVLDFSRSDLHSLFSLAQELRLAVERVGAVDLLRGRVLATLFYEPSTRTSTSFDAAMQ…
SIO_010081: AWJ20_2038
subclass of: SO_0000673
so part of: AWJ20_2038
location: 206591..213319
location: region:206591-213319:1
so has part: feature:206591-213319:1:exon

XP_018736925.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:206591-213319:1:exon

AWJ20_2039
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2039
so part of: sequence
location: <214221..>215399
location: region:214221-215399:1
so has part: feature:214221-215399:1:exon
subclass of: SO_0000010

30033906
type: Gene
SIO_000068: ncbigene

position:214221:1
position: 214221
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:215399:1
position: 215399
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:214221-215399:1:exon

AWJ20_2039
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2039
product: hypothetical protein
transcript id: XM_018878965.1
SIO_010081: AWJ20_2039
subclass of: SO_0000673
so part of: AWJ20_2039
location: <214221..>215399
location: region:214221-215399:1
so has part: feature:214221-215399:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:214221-215399:1:exon

AWJ20_2039
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2039
inference: similar to AA sequence:KEGG_Orthology:K12837
codon start: 1
product: hypothetical protein
translation: MAKASGLFPTSSDIRKLNERRDGGDNDKGSMAEPASLMLPPPPPTILTAGSNEYNVSPQGSRLAKLVILSGYDAEAQSIEMLTKLFITLLLSITDSGATADSVKDCFYANGSDKTKLVIELAKPELATIAVAFDGVALDESEPDTTKFSITRPEGYIIPLSSDNIEGAKDDKKTKFDVEGPFKGSMSNIPTFIGEEQILELLKAFGQVRFCKILTDVAGNSKGVAFFEYEDTSILDIACQGLNNMALGDNQLIVRKACVGLEQSQPVMSLDTLLKLCQDNDRKNEHPPTSVMQLWNAISPEELADDEAREEISAQIEQECSKFGPVESVNIPKENSASSTMLSSSIGGRIYVKFSSSSACKEAVKHLGGRKFTDRTIISGFYHEDAYKLGIL
SIO_010081: AWJ20_2039
subclass of: SO_0000673
so part of: AWJ20_2039
location: 214221..215399
location: region:214221-215399:1
so has part: feature:214221-215399:1:exon

XP_018736926.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:214221-215399:1:exon

AWJ20_2040
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SEC27
locus tag: AWJ20_2040
so part of: sequence
location: <218687..>221182
location: region:218687-221182:1
so has part: feature:218687-221182:1:exon
subclass of: SO_0000010

30033908
type: Gene
SIO_000068: ncbigene

position:218687:1
position: 218687
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:221182:1
position: 221182
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:218687-221182:1:exon

AWJ20_2040
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SEC27
locus tag: AWJ20_2040
product: Sec27p
transcript id: XM_018878967.1
SIO_010081: AWJ20_2040
subclass of: SO_0000673
so part of: AWJ20_2040
location: <218687..>221182
location: region:218687-221182:1
so has part: feature:218687-221182:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:218687-221182:1:exon

AWJ20_2040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SEC27
locus tag: AWJ20_2040
inference: similar to AA sequence:KEGG_Orthology:K17302
note: Essential beta'-coat protein of the COPI coatomer; involved in ER-to-Golgi and Golgi-to-ER transport; contains WD40 domains that mediate cargo selective interactions; 45% sequence identity to mammalian beta'-COP; GO_component: GO:0030126 - COPI vesicle coat [Evidence IGI,ISS] [PMID 7929113]; GO_component: GO:0030663 - COPI-coated vesicle membrane [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030117 - membrane coat [Evidence IEA]; GO_function: GO:0005198 - structural molecule activity [Evidence IEA]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 21070969]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 7929113]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway [Evidence IMP,IPI] [PMID 17101773]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IMP] [PMID 8001155]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA,IEA]
codon start: 1
product: Sec27p
translation: MNYETQVVVKTIDVSHLPVRAGRFVARKNWIVLGSDDYMVRVFNYNTGEKVTQFEAHPDYIRVLVVHPTQPFVLTAGDDMTIKLWNWDQGWRNTQTFEGHSHYVMYLAFNPKDPNTFASACLDKTVKIWSLGSSTPNFTLEAHETKGANFVEYYPQSDKPYLITTSDDRTIRVWDYQTKSCVATMADHMNNVSFAVFHPELPVIISGSEDSTIKIWNANTYKLEQTLNYGLERAWCAACKKGSNLMALGFDAGSVVLQLGKEEPAISMDPNGRLIWSKHSEVFSSVVKGGDDVNDGDFLPIAQKDLGNVEVYPTQLNHSPNGRFVAVTGDGEYIIYTALAWRNKSFGSGLDFAWAQDSNEYAVRESTSSIRLFKNFKERPIGHLNIGYSATQIYGGTLLGINGGEFVAFYDWESGLLVRRIDVEASQVVWSDSGELVAIITDDSFYILRFSRDAFQLAVQNNSVSEDDGVEESFEVAYDISDSVRTGKWVGDCFIYTTFSNRLNYLVGGEVYTISHFDKQMYLLGYIPRDNAIYLADKDVNVTAYKLSLAVVEYQTVVLRGDMDYAAEILEKVPDNEKTKVARFLEAQGYPELALEVSRDSDHRFDLAVSLDKLDIAEEIASSVDDEHKWKSLGDKSLLSWNVILAEKSFKAAHDFESLLLIYTSTGNKPGAAELAEEAVKAGKYNLAFNAYWYVGDTDACIKLLNDTGRSSEAALFALTYGGDVDGSVKKWKDGLVKSGRSKIAQSISEPSQDKELFPANVGQKVTTLPSIGGDLIDVDDIATPEPEPQSAEEAELIEVEAEAEPESDPTAEDKAEETEDADAEVEKDSL
SIO_010081: AWJ20_2040
subclass of: SO_0000673
so part of: AWJ20_2040
location: 218687..221182
location: region:218687-221182:1
so has part: feature:218687-221182:1:exon

XP_018736927.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:218687-221182:1:exon

AWJ20_2041
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2041
so part of: sequence
location: <221497..>222978
location: region:221497-222978:1
so has part: feature:221497-222978:1:exon
subclass of: SO_0000010

30033909
type: Gene
SIO_000068: ncbigene

position:221497:1
position: 221497
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:222978:1
position: 222978
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:221497-222978:1:exon

AWJ20_2041
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2041
product: hypothetical protein
transcript id: XM_018878968.1
SIO_010081: AWJ20_2041
subclass of: SO_0000673
so part of: AWJ20_2041
location: <221497..>222978
location: region:221497-222978:1
so has part: feature:221497-222978:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:221497-222978:1:exon

AWJ20_2041
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2041
codon start: 1
product: hypothetical protein
translation: MSIVKIQNGLFRKLGEGSKRTLIFKSPLSLDIKSTDRWAITGPRKTELLEILASKHIPDPPLSRTYPFLANQNAWPSQVTQLIEFSNADVKAPHISARYESLREELDETLNESLLAATHSKDQAKVDHVLEKFSLKGIENRWIVGLSNGQSRRARLAKALLRDPKFLLVDEPFVGLDPFSRKQASDILSKLSPEPHVVVGLRYQDEFPSWITHVAITDRTGNGISHQGPIKDLAPYLDEMRRDHIVQVVKAKDLAVKAAEKSKLAASNNPEVIKLDSVSVSYKGEPIFSNLTWKVKKGEKWHLRGDNGTGKSTLLSLLTGDHPQSWNPKISLFGEPRGTGKQSYFSINEKFGHVSPEIHALFPMNLTVKEAISTGFVVGYYIPLKKLSQEQEDRIDELLSLFEHISKDEVLRDLSVSNQKIVMFLRGLAKRPDILILDEAFSAMAEESIDKCKQYIDLEYDGTLIVVGHIEDEVPLCHKYIRLTAAEPEFGEL
SIO_010081: AWJ20_2041
subclass of: SO_0000673
so part of: AWJ20_2041
location: 221497..222978
location: region:221497-222978:1
so has part: feature:221497-222978:1:exon

XP_018736928.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:221497-222978:1:exon

AWJ20_2042
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2042
so part of: sequence
location: complement(<223075..>223743)
location: region:223075-223743:-1
so has part: feature:223075-223743:-1:exon
subclass of: SO_0000010

30033910
type: Gene
SIO_000068: ncbigene

position:223075:-1
position: 223075
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:223743:-1
position: 223743
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:223075-223743:-1:exon

AWJ20_2042
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2042
product: hypothetical protein
transcript id: XM_018878969.1
SIO_010081: AWJ20_2042
subclass of: SO_0000673
so part of: AWJ20_2042
location: complement(<223075..>223743)
location: region:223075-223743:-1
so has part: feature:223075-223743:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:223075-223743:-1:exon

AWJ20_2042
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2042
inference: similar to AA sequence:KEGG_Orthology:K07734
codon start: 1
product: hypothetical protein
translation: MYIPKYNVEPSEELQIQLIREFPLGTIITSSADGIIANHLPFLVDKTSDGLVLRAHFARVNHQRDDFRSGKELLVVFKGLDGYETPNWYVDTKPTTGKVVPTWDFSAVHVYGVPTVIEDPAWIYKQFTDLSNMNEREQSEPWTVDQAPESYVNLLQKAIWGLEIKVTRVESKWKVGQKLSDKDNRGVIEGFKTQGEKGAALSEVVEKAKIRHDERRKNGLQT
SIO_010081: AWJ20_2042
subclass of: SO_0000673
so part of: AWJ20_2042
location: complement(223075..223743)
location: region:223075-223743:-1
so has part: feature:223075-223743:-1:exon

XP_018736929.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:223075-223743:-1:exon

AWJ20_2043
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2043
so part of: sequence
location: complement(<225405..>226148)
location: region:225405-226148:-1
so has part: feature:225405-226148:-1:exon
subclass of: SO_0000010

30033911
type: Gene
SIO_000068: ncbigene

position:225405:-1
position: 225405
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:226148:-1
position: 226148
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:225405-226148:-1:exon

AWJ20_2043
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2043
product: hypothetical protein
transcript id: XM_018878970.1
SIO_010081: AWJ20_2043
subclass of: SO_0000673
so part of: AWJ20_2043
location: complement(<225405..>226148)
location: region:225405-226148:-1
so has part: feature:225405-226148:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:225405-226148:-1:exon

AWJ20_2043
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2043
codon start: 1
product: hypothetical protein
translation: MRFSYATSALLAVAATSVNAALVTQYVQVTVDVYEQAHVFVNGNGDPVSTSYELVSSEESAPTQVPSSHQHSDAQPVQIQLTTSTAAASSSPAPPPPAPTTSSSTTTPPPPPPPTTTSSPPPPPPAPSSSSASSDSSDSSSSSGSGEFSGQGTFYSPGMGSCGIESSDSDFIAALNAPQMGSPANPNANPNCGKKAIVYSGGKSVTVTIVDKCPSCAYGSLDLSPAAFNELADPSAGRIDISWSWAS
SIO_010081: AWJ20_2043
subclass of: SO_0000673
so part of: AWJ20_2043
location: complement(225405..226148)
location: region:225405-226148:-1
so has part: feature:225405-226148:-1:exon

XP_018736930.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:225405-226148:-1:exon

AWJ20_2044
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: HNM1
locus tag: AWJ20_2044
so part of: sequence
location: complement(<227499..>229136)
location: region:227499-229136:-1
so has part: feature:227499-229136:-1:exon
subclass of: SO_0000010

30033912
type: Gene
SIO_000068: ncbigene

position:227499:-1
position: 227499
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:229136:-1
position: 229136
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:227499-229136:-1:exon

AWJ20_2044
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: HNM1
locus tag: AWJ20_2044
product: Hnm1p
transcript id: XM_018878971.1
SIO_010081: AWJ20_2044
subclass of: SO_0000673
so part of: AWJ20_2044
location: complement(<227499..>229136)
location: region:227499-229136:-1
so has part: feature:227499-229136:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:227499-229136:-1:exon

AWJ20_2044
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: HNM1
locus tag: AWJ20_2044
note: Plasma membrane transporter for choline, ethanolamine, and carnitine; involved in the uptake of nitrogen mustard and the uptake of glycine betaine during hypersaline stress; co-regulated with phospholipid biosynthetic genes and negatively regulated by choline and myo-inositol; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 2203793]; GO_function: GO:1901235 - (R)-carnitine transmembrane transporter activity [Evidence IMP] [PMID 23755272]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015220 - choline transmembrane transporter activity [Evidence IMP] [PMID 2203793]; GO_function: GO:0015220 - choline transmembrane transporter activity [Evidence IGI] [PMID 3514579]; GO_function: GO:0034228 - ethanolamine transmembrane transporter activity [Evidence IGI] [PMID 3514579]; GO_process: GO:1900749 - (R)-carnitine transport [Evidence IMP] [PMID 23755272]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0015871 - choline transport [Evidence IMP] [PMID 2203793]; GO_process: GO:0015871 - choline transport [Evidence IGI] [PMID 3514579]; GO_process: GO:0034229 - ethanolamine transport [Evidence IGI] [PMID 3514579]; GO_process: GO:0031460 - glycine betaine transport [Evidence IMP] [PMID 16487344]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Hnm1p
translation: MVEEEKKRLSVESLRSGQQQKLDAFDLADMGHAQELPRQFSMWSMLALAFSVLGTWATFAQDLMSGLQNGGSIAILWGLALVTICNICVAVSLGELCSSMPTALGQAYWIHRLWNTPAGRFSSYICAWINTFGWWTLTASQIAFMTNFILGIKVMFDNDWAGASEGWVQFLVYVGITVVFTLTNVLACRKDNFLAWFNNVVGIQFTMLFVIFSLAMLIAVGVHHDKHFQTAGFVFGKWLNETGWPDGVVWFTGLLQAAYGLTAFDSVIHMVEEIPSPRVNAPRVIYLAVIMGAITGGIFMVVCLFCIQDLDSILNSPTGLPFMQLLTDTVGVQGGAALLSIFVFNGLGQGVSVATTASRLTWGFARDGGLPFSQYFAHVDTYWHVPARSLWAQGVIIAVVGVLYLFASTVLEAILSVSTIALTISYGMPIAALVLVGRDKLTPGPFHLGRYGMFCNIVSIIYCCVTTVFFFFPGGPDPAPADMNYAIAVFGVMMVIALAFWFIKGRRTYLLTDEALIEMLRARELENSANDATVVVVDGQAPEKN
SIO_010081: AWJ20_2044
subclass of: SO_0000673
so part of: AWJ20_2044
location: complement(227499..229136)
location: region:227499-229136:-1
so has part: feature:227499-229136:-1:exon

XP_018736931.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:227499-229136:-1:exon

AWJ20_2045
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2045
so part of: sequence
location: <230964..>231419
location: region:230964-231419:1
so has part: feature:230964-231419:1:exon
subclass of: SO_0000010

30033913
type: Gene
SIO_000068: ncbigene

position:230964:1
position: 230964
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:231419:1
position: 231419
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:230964-231419:1:exon

AWJ20_2045
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2045
product: hypothetical protein
transcript id: XM_018878972.1
SIO_010081: AWJ20_2045
subclass of: SO_0000673
so part of: AWJ20_2045
location: <230964..>231419
location: region:230964-231419:1
so has part: feature:230964-231419:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:230964-231419:1:exon

AWJ20_2045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2045
codon start: 1
product: hypothetical protein
translation: MPPKTSAAELTIRLKHKKQTVLLILAGGVTVNGLKKTLAKALNETRGSDQGVDEVDDAPIPKPSFETASDVEEDTDKQPGAEEITAKIIDANDLRVGIPVDKSDFSKGFTDITDAKGNIEANGIVEGSILAFCTKDGDFEIEVPYDDNLDE
SIO_010081: AWJ20_2045
subclass of: SO_0000673
so part of: AWJ20_2045
location: 230964..231419
location: region:230964-231419:1
so has part: feature:230964-231419:1:exon

XP_018736932.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:230964-231419:1:exon

AWJ20_2046
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RTR1
locus tag: AWJ20_2046
so part of: sequence
location: <234659..>235537
location: region:234659-235537:1
so has part: feature:234659-235537:1:exon
subclass of: SO_0000010

30033914
type: Gene
SIO_000068: ncbigene

position:234659:1
position: 234659
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:235537:1
position: 235537
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:234659-235537:1:exon

AWJ20_2046
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RTR1
locus tag: AWJ20_2046
product: Rtr1p
transcript id: XM_018878973.1
SIO_010081: AWJ20_2046
subclass of: SO_0000673
so part of: AWJ20_2046
location: <234659..>235537
location: region:234659-235537:1
so has part: feature:234659-235537:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:234659-235537:1:exon

AWJ20_2046
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RTR1
locus tag: AWJ20_2046
note: CTD phosphatase; dephosphorylates S5-P in the C-terminal domain of Rpo21p; has a cysteine-rich motif required for function and conserved in eukaryotes; shuttles between the nucleus and cytoplasm; RTR1 has a paralog, RTR2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 18408053]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 18408053]; GO_function: GO:0008420 - CTD phosphatase activity [Evidence IDA] [PMID 19394294]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_process: GO:0070940 - dephosphorylation of RNA polymerase II C-terminal domain [Evidence IDA,IMP] [PMID 19394294]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IGI,IMP,IPI] [PMID 18408053]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]
codon start: 1
product: Rtr1p
translation: MSDTIFSMDTGDSTAHPKFATQQDAVINGVTHNVSANNSPSQSLIEMCRIIAKYSKPGFLSAGEASQILLSIVELMSDGVESDALKFSSRFLTGSDYEDIVVERNILHRCGYPICDKDPKGIHKAHQINYRTPKMILPSTYLSKYCTKEHYQASTFFASQLSDASLFSRKDVTLLPYGASTEYELQIALMEEVQVLSQSQNRSMQDIIQELKSLSLSKQQSQIDTLPSTQPRRYSSANPADPHLVDLSDQIKAFKIVERDPSIPTLDAGDEPIEEAIASGVEGYNSRFGRSV
SIO_010081: AWJ20_2046
subclass of: SO_0000673
so part of: AWJ20_2046
location: 234659..235537
location: region:234659-235537:1
so has part: feature:234659-235537:1:exon

XP_018736933.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:234659-235537:1:exon

AWJ20_2047
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: HXT13
locus tag: AWJ20_2047
so part of: sequence
location: <236924..>238288
location: region:236924-238288:1
so has part: feature:236924-238288:1:exon
subclass of: SO_0000010

30033915
type: Gene
SIO_000068: ncbigene

position:236924:1
position: 236924
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:238288:1
position: 238288
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:236924-238288:1:exon

AWJ20_2047
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: HXT13
locus tag: AWJ20_2047
product: hexose transporter HXT13
transcript id: XM_018878974.1
SIO_010081: AWJ20_2047
subclass of: SO_0000673
so part of: AWJ20_2047
location: <236924..>238288
location: region:236924-238288:1
so has part: feature:236924-238288:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:236924-238288:1:exon

AWJ20_2047
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: HXT13
locus tag: AWJ20_2047
inference: similar to AA sequence:KEGG_Orthology:K08139
codon start: 1
product: hexose transporter HXT13
translation: MVDEKIQVENVEHVVYDSPEKEIVEFRGSDALLEAAQKDPPKIFSKRMLQLYIICLIPFLCSTMNGYDGSLLSSLLLLKPFNDTFGATTVGIKAGLISAMYQIGGVATIPFLGPVNDTFGRRFGMFFGCLIVVIGTVVQATSKNINQLMGGRFVLGFGVSFATAAAPIYAIEISHPSYRAAITGSYNTLYCWGSILATVVLFCTQNIPNNRAWIIPTYVQMVCPGLVVIFSMFLPESPRWLYCNGKQEKAKEILTYYHGEGNPENAFITLQIREFEEQLELDGTDKRWWDYRALFRDRASIYRLCCNLVYSCFGQLSNGGISYFVGAFYHSAGITSNRTIFSYNLGTGFLSFILALIGAQVIQQIGRRKVILGSLVGMTLFWALVTICVARFDASGEKTTAWAQAGIAFYILFGVVYGKLRCCLFRQVYILTKTQPSRLLLCKHFILMKSFHTK
SIO_010081: AWJ20_2047
subclass of: SO_0000673
so part of: AWJ20_2047
location: 236924..238288
location: region:236924-238288:1
so has part: feature:236924-238288:1:exon

XP_018736934.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:236924-238288:1:exon

AWJ20_2048
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SIP5
locus tag: AWJ20_2048
so part of: sequence
location: <242372..>244669
location: region:242372-244669:1
so has part: feature:242372-244669:1:exon
subclass of: SO_0000010

30033916
type: Gene
SIO_000068: ncbigene

position:242372:1
position: 242372
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:244669:1
position: 244669
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:242372-244669:1:exon

AWJ20_2048
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SIP5
locus tag: AWJ20_2048
product: Sip5p
transcript id: XM_018878975.1
SIO_010081: AWJ20_2048
subclass of: SO_0000673
so part of: AWJ20_2048
location: join(<242372..242725,242918..>244669)
location: region:242372-244669:1
so has part: feature:242372-242725:1:exon
so has part: feature:242918-244669:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:242372-242725:1:exon

position:242725:1
position: 242725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:242918-244669:1:exon

position:242918:1
position: 242918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

AWJ20_2048
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SIP5
locus tag: AWJ20_2048
note: hypothetical protein; interacts with both the Reg1p/Glc7p phosphatase and the Snf1p kinase; forms cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 10628972]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0042149 - cellular response to glucose starvation [Evidence IMP,IPI] [PMID 10628972]
codon start: 1
product: Sip5p
translation: MGNVPTKDVSATGSGSNSRSRSASTATAESSTTTASSSRRTRLSSTSSRSTVRDETSGFGTSVTGLSRKSGKKKEKSSASDAPLVSDVSEMVDGGYLVPQGVYSGPQDFKAKVVRNLIIERRLAPFYKGIEDYDDTWTDRQLLAAVRNLPIPPATDPVVSPTTSSDQAEPVEEPDRKKKEKEADTPVDPATETDESAEQGYESENALKWVSSSLPNAVGGSFLQARNSDDGGSSGRLAGFESNPSIRSSSSRSSDPDDGILSPPSNGKQKQPMTPPLAASAEEDETIPFPSSPASSSSGAMRIIEFKTETMHIEDTATGTNSISTNASARITSGGGISIETRPREGSAKLGPPILLPRNRANTTSRYGPGPTSSSMKPAPPPMEVILYRGAIECPICFLNYPKYLNTTRCCTQPICSECFVQIKRPDPHPPYHENNGSGPSTAPATDNPEEALVSEPACCPFCQMPEFGVVYIPSPHRSGIPASSLTSSLRAHLSSSLSGVFSSHHHTPVSSSAASIVSMSTSNSATGTPRRRGSLPPNAPEVVTTDHVRPDWAMKLSRARHQLARKSAAANALHASAFLFEGNEGAASSSSSHSRRHDKKKKSSSRLRGLSSPSSPASILGSSSSGSGSSRRHTTSSPSSGTSFPVPSRTRIRDLEDMMIVEAIRRSLTDERSGSPSGESPKAPASQSSQEVKKDEITTQ
SIO_010081: AWJ20_2048
subclass of: SO_0000673
so part of: AWJ20_2048
location: join(242372..242725,242918..244669)
location: region:242372-244669:1
so has part: feature:242372-242725:1:exon
so has part: feature:242918-244669:1:exon

XP_018736935.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:242372-242725:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:242918-244669:1:exon

AWJ20_2049
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: HAC1
locus tag: AWJ20_2049
so part of: sequence
location: <250855..>252030
location: region:250855-252030:1
so has part: feature:250855-252030:1:exon
subclass of: SO_0000010

30033917
type: Gene
SIO_000068: ncbigene

position:250855:1
position: 250855
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:252030:1
position: 252030
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:250855-252030:1:exon

AWJ20_2049
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: HAC1
locus tag: AWJ20_2049
product: transcription factor HAC1
transcript id: XM_018878976.1
SIO_010081: AWJ20_2049
subclass of: SO_0000673
so part of: AWJ20_2049
location: <250855..>252030
location: region:250855-252030:1
so has part: feature:250855-252030:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:250855-252030:1:exon

AWJ20_2049
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: HAC1
locus tag: AWJ20_2049
codon start: 1
product: transcription factor HAC1
translation: MVVVKSEPKDLYLFSDESLQYGDDTLIDDKDALNDDEDNMNETDELQDQDCSLSDRQMSEEHDLDDSDMVTTESIDAATGLTITTTVGSGANKRKEVMTLPLPPGSLPPRKRAKTKDEKEQRRIERIMRNRQAAHASREKKRKHVEELEKKCVVLTSENEQLQQNMRQMKESQVQMLEQHYLLMAKVQQLQNVLKTAKTTGDLSVLDSADFTVSLPSMPTATLLSQGSSDMVSPVSTSTTTTGTSTPGTSVDDSSERDKLHTKASRSSSPLSSSSSSSTMLLSSTVKEEECTSPEALLLSNVITTAPSLSNSPLQSDNLDFDDSSNESTISTPPSHNTYIKQELFEDDKDSYNFENSNQAHHPAAVMCDQQRLRLTKFSPLSESLPQSITV
SIO_010081: AWJ20_2049
subclass of: SO_0000673
so part of: AWJ20_2049
location: 250855..252030
location: region:250855-252030:1
so has part: feature:250855-252030:1:exon

XP_018736936.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:250855-252030:1:exon

AWJ20_2050
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2050
so part of: sequence
location: <254820..>256241
location: region:254820-256241:1
so has part: feature:254820-256241:1:exon
subclass of: SO_0000010

30033919
type: Gene
SIO_000068: ncbigene

position:254820:1
position: 254820
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:256241:1
position: 256241
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:254820-256241:1:exon

AWJ20_2050
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2050
product: hypothetical protein
transcript id: XM_018878978.1
SIO_010081: AWJ20_2050
subclass of: SO_0000673
so part of: AWJ20_2050
location: <254820..>256241
location: region:254820-256241:1
so has part: feature:254820-256241:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:254820-256241:1:exon

AWJ20_2050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2050
codon start: 1
product: hypothetical protein
translation: MRAAVNLHINITDDMRGGVGGGGGGMPGYAMTRTPSNSSVNSTSSNPPPLTPINQTIGTPTINRQFMFHRLNSVSSIATSEDDSDVNARLDNPLDSFLDWPSQDDDLLMNIYQAYIDNPTTAPFAGKIPPSGVVHQVAKTTLHEAKKKSRPFLHSMLAVRKRLLLLCERNSAPTQIYTRASSTSSLSSNSSFNFSNAPAITPGTIPPNRFFRQLSFGSNGSPESPVMTPLANRIKRPCTGFANGTSPGEAHAITTNDGVSLSAFMLGHPDDYDEEMAFADESPLGTSLLPPPPTFRIPEYENSNNNNSNNNAGPQSPIDIQPSPFDRKTRQGSTSSRGSPKLGSQSQNVPPQQPNAYSSQTQQNIANWLLNTPNHHGQATTSGLGMPLTPAPSPLNIKNAHRASVGTSAQANPDDFDFGLDSPFKEMTVTPTRPHQQSPGSQPSTPVEDPYPNYTAQRKRESLRMKRGMKAPI
SIO_010081: AWJ20_2050
subclass of: SO_0000673
so part of: AWJ20_2050
location: 254820..256241
location: region:254820-256241:1
so has part: feature:254820-256241:1:exon

XP_018736937.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:254820-256241:1:exon

AWJ20_2051
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: GLE2
locus tag: AWJ20_2051
so part of: sequence
location: <256745..>257827
location: region:256745-257827:1
so has part: feature:256745-257827:1:exon
subclass of: SO_0000010

30033920
type: Gene
SIO_000068: ncbigene

position:256745:1
position: 256745
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:257827:1
position: 257827
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:256745-257827:1:exon

AWJ20_2051
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: GLE2
locus tag: AWJ20_2051
product: RNA export factor GLE2
transcript id: XM_018878979.1
SIO_010081: AWJ20_2051
subclass of: SO_0000673
so part of: AWJ20_2051
location: <256745..>257827
location: region:256745-257827:1
so has part: feature:256745-257827:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:256745-257827:1:exon

AWJ20_2051
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: GLE2
locus tag: AWJ20_2051
inference: similar to AA sequence:KEGG_Orthology:K14298
note: RNA export factor associated with the nuclear pore complex (NPC); associates with NUP116p; required for polyadenylated RNA export but not for protein import; homologous to S. pombe Rae1p and human RAE1; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15210706]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 8970155]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 9725905]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence IMP] [PMID 8970155]; GO_process: GO:0000973 - posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 20932479]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:2000728 - regulation of mRNA export from nucleus in response to heat stress [Evidence IMP] [PMID 15210706]; GO_process: GO:0000972 - transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 20098417]; GO_process: GO:0000972 - transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 20932479]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: RNA export factor GLE2
translation: MSGLFASRSVGTTSNGPAPSSELMLQNDRTLANPPEDSISDMSFSSQADYLAVASWDKKVRIYEVSPQGDSQGRAMYEHQAPVLTAQWFQDGSKVVSGGCDNAVRAHDLQSSQTIQIGQHDAPVSSVRAVDVGSGSPVVASASWDKTLRYWDLRQQQAISTIQLPERAYSMDSQGKLLVVGTAERHICVIDLSNPGQIFKNTQSPLKWQTRVVACYPSGNGYAVTSIEGRCAIQYVDDAEQAKLGFSFKCHRDQATPPRNDNLIYSVNGVSFHPVYGTFCTAGSDGTVHFWDKDSRSRLKFSRPVGGTISSTAFNRNGTLFAYAVSYDWSKGYQFNTPNYPNMVKIHPTNDSETKQRPKK
SIO_010081: AWJ20_2051
subclass of: SO_0000673
so part of: AWJ20_2051
location: 256745..257827
location: region:256745-257827:1
so has part: feature:256745-257827:1:exon

XP_018736938.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:256745-257827:1:exon

AWJ20_2052
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: IGO2
locus tag: AWJ20_2052
so part of: sequence
location: complement(<258533..>258823)
location: region:258533-258823:-1
so has part: feature:258533-258823:-1:exon
subclass of: SO_0000010

30033921
type: Gene
SIO_000068: ncbigene

position:258533:-1
position: 258533
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:258823:-1
position: 258823
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:258533-258823:-1:exon

AWJ20_2052
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: IGO2
locus tag: AWJ20_2052
product: Igo2p
transcript id: XM_018878980.1
SIO_010081: AWJ20_2052
subclass of: SO_0000673
so part of: AWJ20_2052
location: complement(<258533..>258823)
location: region:258533-258823:-1
so has part: feature:258533-258823:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:258533-258823:-1:exon

AWJ20_2052
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: IGO2
locus tag: AWJ20_2052
note: Protein required for initiation of G0 program; prevents degradation of nutrient-regulated mRNAs via the 5'-3' mRNA decay pathway; phosphorylated by Rim15p; GFP protein localizes to the cytoplasm and nucleus; IGO2 has a paralog, IGO1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0019208 - phosphatase regulator activity [Evidence IMP] [PMID 23861665]; GO_process: GO:0048255 - mRNA stabilization [Evidence IGI] [PMID 20471941]
codon start: 1
product: Igo2p
translation: MYGRLPSRAELLNRKLKDRKFFDSGDYALKQAGKDTTQVVGSEHPVPEIIPHHTSPPQSRHASFSYGSATAAHDPSLMAAHELDLKLKGIHRSSIA
SIO_010081: AWJ20_2052
subclass of: SO_0000673
so part of: AWJ20_2052
location: complement(258533..258823)
location: region:258533-258823:-1
so has part: feature:258533-258823:-1:exon

XP_018736939.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:258533-258823:-1:exon

AWJ20_2053
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MRPS16
locus tag: AWJ20_2053
so part of: sequence
location: complement(<264441..>264833)
location: region:264441-264833:-1
so has part: feature:264441-264833:-1:exon
subclass of: SO_0000010

30033922
type: Gene
SIO_000068: ncbigene

position:264441:-1
position: 264441
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:264833:-1
position: 264833
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:264441-264833:-1:exon

AWJ20_2053
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MRPS16
locus tag: AWJ20_2053
product: mitochondrial 37S ribosomal protein MRPS16
transcript id: XM_018878981.1
SIO_010081: AWJ20_2053
subclass of: SO_0000673
so part of: AWJ20_2053
location: complement(<264441..>264833)
location: region:264441-264833:-1
so has part: feature:264441-264833:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:264441-264833:-1:exon

AWJ20_2053
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MRPS16
locus tag: AWJ20_2053
inference: similar to AA sequence:KEGG_Orthology:K02959
note: Mitochondrial ribosomal protein of the small subunit; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0006412 - translation [Evidence IEA]
codon start: 1
product: mitochondrial 37S ribosomal protein MRPS16
translation: MKGSVRIRLARFGRKHAPVYNIVVAKAKSGRDKLPVEVIGTYNPIATPLTPEQKERGEKPVKDIKIDFHRSKYWIGVGAQPTEVVARLFRKAGVLPPQWPGPNSGPVVPKKNEIQGVKAITEPLPEPPVR
SIO_010081: AWJ20_2053
subclass of: SO_0000673
so part of: AWJ20_2053
location: complement(264441..264833)
location: region:264441-264833:-1
so has part: feature:264441-264833:-1:exon

XP_018736940.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:264441-264833:-1:exon

AWJ20_2054
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2054
so part of: sequence
location: complement(<265090..>265161)
location: region:265090-265161:-1
so has part: feature:265090-265161:-1:exon
subclass of: SO_0000663

30033923
type: Gene
SIO_000068: ncbigene

position:265090:-1
position: 265090
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:265161:-1
position: 265161
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:265090-265161:-1:exon

AWJ20_2054
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_2054
product: tRNA-Thr
SIO_010081: AWJ20_2054
subclass of: SO_0000673
so part of: AWJ20_2054
location: complement(<265090..>265161)
location: region:265090-265161:-1
so has part: feature:265090-265161:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:265090-265161:-1:exon

AWJ20_2055
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: DNM1
locus tag: AWJ20_2055
so part of: sequence
location: <266084..>268516
location: region:266084-268516:1
so has part: feature:266084-268516:1:exon
subclass of: SO_0000010

30033924
type: Gene
SIO_000068: ncbigene

position:266084:1
position: 266084
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:268516:1
position: 268516
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:266084-268516:1:exon

AWJ20_2055
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: DNM1
locus tag: AWJ20_2055
product: dynamin-related GTPase DNM1
transcript id: XM_018878982.1
SIO_010081: AWJ20_2055
subclass of: SO_0000673
so part of: AWJ20_2055
location: <266084..>268516
location: region:266084-268516:1
so has part: feature:266084-268516:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:266084-268516:1:exon

AWJ20_2055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: DNM1
locus tag: AWJ20_2055
inference: similar to AA sequence:KEGG_Orthology:K17065
note: Dynamin-related GTPase involved in mitochondrial organization; required for mitochondrial fission and morphology; assembles on the cytoplasmic face of mitochondrial tubules at sites at which division will occur; also participates in endocytosis and regulating peroxisome abundance; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 11038182]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 16968746]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 16186251]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0042802 - identical protein binding [Evidence IDA] [PMID 16186251]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0042803 - protein homodimerization activity [Evidence IDA] [PMID 16186251]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0001300 - chronological cell aging [Evidence IMP] [PMID 18298044]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000266 - mitochondrial fission [Evidence IGI,IMP] [PMID 10559943]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence IGI] [PMID 17336903]; GO_process: GO:0051646 - mitochondrion localization [Evidence IGI] [PMID 23341591]; GO_process: GO:0007005 - mitochondrion organization [Evidence IMP] [PMID 9786946]; GO_process: GO:0016559 - peroxisome fission [Evidence IGI] [PMID 18445678]; GO_process: GO:0007031 - peroxisome organization [Evidence IGI,IMP] [PMID 16968746]; GO_process: GO:0051260 - protein homooligomerization [Evidence IDA] [PMID 16186251]
codon start: 1
product: dynamin-related GTPase DNM1
translation: MAALEDLIPVVNKLQDLVFNTIGSDTLDLPQVVVVGSQSSGKSSVLENIVGRDFLPRGTGIVTRRPLILQLVNIPSSAPPTWTQNDNTGYGTNNVNNGSTSSNSTTSNSLSSSPASTHGAIAGGGPNPNATFVREAEWGEFLHIPGRRFYDFSDIRREIESETARIAGNNKGINRLPINLKIFSPHVLNLTLVDLPGLTKIPIGDQPTDIERQTRGLISEYIAKPNSIILAVSPANVDLVNSESLKLARQVDPQGKRTIGVLTKLDLMDQGTNALDILSGHVYPLKLGFIGVVNRSQQDIQEGKSLDESLTAEKNFFATHPVYRNIAHKCGTAYLAKSLNQTLMAHIRDRLPDIKARLNTLMGQTEQELASYGVDSSYSKENRGPLILQLMTRFASSFIASIEGTSSEISTKELCGGARIYYIYNEVFGQSLTNIDPVGTLSHSDVRTAIRNSTGPRPSLFVPELAFDLLVKPQIKLLEGPSQRCVELVYEELMKICHNCGSTELSRYPKLQAKLIEVISDLLRERLGPTSAYVSSLIDIQRAYINTNHPNFVGAAAAMASVLEEKQAKEKKVKELEKAAHEKKLLGDLAFNGSAATDGSDTPVSGQEPPADHILQNGSADQTKKKHRPSSSSNPITNNVPATHEATPNGHKDSFLNYFFGKDGAEQSSVGGHSALSARSKDSPFIQSPAASDPSSARFDLRDIESSLDNPLEHFSEREQLECELITRLIISYFDIVRESIQDQVPKAVMHLLVNFSKESAQNRLVSELYKESLFDDLLYEDETLAQEREKCQNMLKTYKEAARVIGEVV
SIO_010081: AWJ20_2055
subclass of: SO_0000673
so part of: AWJ20_2055
location: 266084..268516
location: region:266084-268516:1
so has part: feature:266084-268516:1:exon

XP_018736941.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:266084-268516:1:exon

AWJ20_2056
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: AIM17
locus tag: AWJ20_2056
so part of: sequence
location: complement(<268605..>269843)
location: region:268605-269843:-1
so has part: feature:268605-269843:-1:exon
subclass of: SO_0000010

30033925
type: Gene
SIO_000068: ncbigene

position:268605:-1
position: 268605
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:269843:-1
position: 269843
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:268605-269843:-1:exon

AWJ20_2056
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: AIM17
locus tag: AWJ20_2056
product: Aim17p
transcript id: XM_018878983.1
SIO_010081: AWJ20_2056
subclass of: SO_0000673
so part of: AWJ20_2056
location: complement(<268605..>269843)
location: region:268605-269843:-1
so has part: feature:268605-269843:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:268605-269843:-1:exon

AWJ20_2056
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: AIM17
locus tag: AWJ20_2056
note: hypothetical protein; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; null mutant displays reduced frequency of mitochondrial genome loss; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]
codon start: 1
product: Aim17p
translation: MIRGSRLLLRRQLARKYHVESFDKSGISLGGFRTAEPVKFRNLFLRDACASTESVDVSTKQKTFSTAQLGDSIYAKNVTVNPSTQSLDVEWADGHKSSYSQDFLETYSNTVSRRRYRHLDLHDTNIWNSGTSKFTYDDAYSTSYKAYLESPNDLVKSLQRDGIAFITDIPPGEKFNSSKITVEHIAEQIGPIKNTFYGPSWNVISQSMAKNVAYTAVYLPLHMDLLYFESPPGVQLLHVIENNTIGGESIFADSFAAALHILETDPDAYSALTEVPISYHYVNDNQHYYFARPLIVEDVNSSVDEKTGRRAISHINYSPPFQGPIDAIATTHDVADNVVTNFYRGLRLFEEYIENPSNQIEVKMAENTCVLFMNRRTLHGRQQFQPGSGNRWFKGTYLDIDSFQSKLRTSKS
SIO_010081: AWJ20_2056
subclass of: SO_0000673
so part of: AWJ20_2056
location: complement(268605..269843)
location: region:268605-269843:-1
so has part: feature:268605-269843:-1:exon

XP_018736942.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:268605-269843:-1:exon

AWJ20_2057
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RTT109
locus tag: AWJ20_2057
so part of: sequence
location: complement(<271524..>272657)
location: region:271524-272657:-1
so has part: feature:271524-272657:-1:exon
subclass of: SO_0000010

30033926
type: Gene
SIO_000068: ncbigene

position:271524:-1
position: 271524
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:272657:-1
position: 272657
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:271524-272657:-1:exon

AWJ20_2057
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RTT109
locus tag: AWJ20_2057
product: H3 histone acetyltransferase RTT109
transcript id: XM_018878984.1
SIO_010081: AWJ20_2057
subclass of: SO_0000673
so part of: AWJ20_2057
location: complement(<271524..>272657)
location: region:271524-272657:-1
so has part: feature:271524-272657:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:271524-272657:-1:exon

AWJ20_2057
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RTT109
locus tag: AWJ20_2057
inference: similar to AA sequence:KEGG_Orthology:K11309
codon start: 1
product: H3 histone acetyltransferase RTT109
translation: MSIETRFESELREFLPKFKEPFGLVHIRTNPRKCRRLVYLPKKQSRSVPLDASSTHFFVLSYKNIDFFALEIIIYESPNSMTLFVSKADTNGHYYELEAGASLSVLDITTGLLRGLLHHYIKPSKLLRICLFAKSEGQYLFPLSSENPNKHVLPDGELVKWWLKVLNKLSGEFEQISRATLQIPGSDKSAIEAFFPKVTGNGGLPWTVGDIFRDESDLKRKRQRGAVYYIPRFPDDPKGRFLDYLVLEKRAQTTSLDQFILELQSRQEFRLGSVVGIIGVEGFIKENSDAYNLAVSSPHSVSYKEFVQLKDVLMNLSFATREFAESASEEFSDRVPEFAKLKIFGAKEAKIKDKKTATTSAPVNVLGGMLIRKKPKK
SIO_010081: AWJ20_2057
subclass of: SO_0000673
so part of: AWJ20_2057
location: complement(271524..272657)
location: region:271524-272657:-1
so has part: feature:271524-272657:-1:exon

XP_018736943.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:271524-272657:-1:exon

AWJ20_2058
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PRE3
locus tag: AWJ20_2058
so part of: sequence
location: complement(<273377..>273655)
location: region:273377-273655:-1
so has part: feature:273377-273655:-1:exon
subclass of: SO_0000010

30033927
type: Gene
SIO_000068: ncbigene

position:273377:-1
position: 273377
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:273655:-1
position: 273655
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:273377-273655:-1:exon

AWJ20_2058
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PRE3
locus tag: AWJ20_2058
product: proteasome core particle subunit beta 1
transcript id: XM_018878985.1
SIO_010081: AWJ20_2058
subclass of: SO_0000673
so part of: AWJ20_2058
location: complement(<273377..>273655)
location: region:273377-273655:-1
so has part: feature:273377-273655:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:273377-273655:-1:exon

AWJ20_2058
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PRE3
locus tag: AWJ20_2058
inference: similar to AA sequence:KEGG_Orthology:K02738
note: Beta 1 subunit of the 20S proteasome; responsible for cleavage after acidic residues in peptides; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IC] [PMID 9087403]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 9087403]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005839 - proteasome core complex [Evidence IEA]; GO_component: GO:0019774 - proteasome core complex, beta-subunit complex [Evidence IDA] [PMID 9087403]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0004175 - endopeptidase activity [Evidence IEA]; GO_function: GO:0004175 - endopeptidase activity [Evidence IMP] [PMID 9207060]; GO_function: GO:0004175 - endopeptidase activity [Evidence IMP] [PMID 9312134]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004298 - threonine-type endopeptidase activity [Evidence IEA,IEA]; GO_process: GO:0010499 - proteasomal ubiquitin-independent protein catabolic process [Evidence IDA] [PMID 19162040]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 11545745]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 19029916]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IEA]
codon start: 1
product: proteasome core particle subunit beta 1
translation: MAVKFKDGIILGADSRTTTGAFIANRVTDKLTQVHDKVWCCRSGSAADTQAVADIVHYHLQAYAAENNEPPSAKVAASIFRVLCYNNKDNLR
SIO_010081: AWJ20_2058
subclass of: SO_0000673
so part of: AWJ20_2058
location: complement(273377..273655)
location: region:273377-273655:-1
so has part: feature:273377-273655:-1:exon

XP_018736944.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:273377-273655:-1:exon

AWJ20_2059
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: moe1
locus tag: AWJ20_2059
so part of: sequence
location: <274720..>276381
location: region:274720-276381:1
so has part: feature:274720-276381:1:exon
subclass of: SO_0000010

30033928
type: Gene
SIO_000068: ncbigene

position:274720:1
position: 274720
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:276381:1
position: 276381
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:274720-276381:1:exon

AWJ20_2059
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: moe1
locus tag: AWJ20_2059
product: translation initiation factor eIF3d Moe1
transcript id: XM_018878986.1
SIO_010081: AWJ20_2059
subclass of: SO_0000673
so part of: AWJ20_2059
location: <274720..>276381
location: region:274720-276381:1
so has part: feature:274720-276381:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:274720-276381:1:exon

AWJ20_2059
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: moe1
locus tag: AWJ20_2059
inference: similar to AA sequence:KEGG_Orthology:K03251
codon start: 1
product: translation initiation factor eIF3d Moe1
translation: MSAPRLPKLASTSEPWGPPSEVPTSLRFNNVPYAPYSKGDKLGKAADWAFDAGKDGKDQKRQQYGRGFRDPYHAYGSNFTSFFTNEEDEGITSFSVVDSAAKAAPKNAGGRGGSQHTILKSRRGGAGAAGGRGGSFQSQRGHHQGQGRGGQGGGRGQGFKRPGWRDYDKPQKVRDASVNITEGWSLIQSIGFNEFQKLSFDVRQGESIDSYGSVHYYNNKTLDKPSVNAKLEPLDRIVYNISTSDDPVIQELSAKDAGTVFATDSIISLLMCVTKTVNPWDIIITKKNGKVYLDKREGGPLDLVSVDENAADAPADATDSKDTLNNATALAYEATYINQNFNANAVIESSETYDFGKPNPFYSEEDQKQSEPLLAHGYDYKKFNLANNVEEEPINLVIRTEIDAAQKNLNGSVSLVTVKALNEYGGSTGALEWKNRFVNARGAIVAAEMKNNLCKISRWTVQSILAGANLMKIGFVSRVNPKDNTQHTIIGVIGQEPAQLSNQINLNLNNGWGIVKSVVNICSELDEGKYVLLRDPNNPAVKLYKVPSNAFEE
SIO_010081: AWJ20_2059
subclass of: SO_0000673
so part of: AWJ20_2059
location: 274720..276381
location: region:274720-276381:1
so has part: feature:274720-276381:1:exon

XP_018736945.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:274720-276381:1:exon

AWJ20_2060
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2060
so part of: sequence
location: complement(<276531..>279335)
location: region:276531-279335:-1
so has part: feature:276531-279335:-1:exon
subclass of: SO_0000010

30033930
type: Gene
SIO_000068: ncbigene

position:276531:-1
position: 276531
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:279335:-1
position: 279335
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:276531-279335:-1:exon

AWJ20_2060
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2060
product: centrin-binding protein Sfi1
transcript id: XM_018878988.1
SIO_010081: AWJ20_2060
subclass of: SO_0000673
so part of: AWJ20_2060
location: complement(<276531..>279335)
location: region:276531-279335:-1
so has part: feature:276531-279335:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:276531-279335:-1:exon

AWJ20_2060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2060
codon start: 1
product: centrin-binding protein Sfi1
translation: MTSSHRANDDGSEIGQDAISTVDGLTYYDPGHLTSDEDPESFSNSVLRAAARRLSNVNTSAGDEEDQESEEDFDDGDVLQQMKSPIQANRDHQPILPAPPIPHDAIRKTKLTSSDVQLLRLVTEAADRRIRSNRSNSPIKDNGDSSLNEADFAELFQTYKVFTARNKITPENNPSYYHCLNVIVHLCSYPQETWRERLEQLLTDFSSAVTRRLRYQDLEQRLKKFQLYYQSRVLGLWYSRYVEQSMYDQNLQTVAAIRYRQTLKRDAFKVWKYNFEVEQWSLSSAELRYEKSLLRKSLAKLYNKSSSIEGDRNIAKMFILGKFLSKWSKSYHYNKQIGKSASLRYMSGLKRRIFYDWTFKFDEEMAEARANETIAIKCFNSWKNKTARFIQIGLKTEEQADARLAERAIRQWSNLLADRSNDYSLATSVYKKNLAGTVLAVWKKRTQLSLAAYPLLEKNWQSKASVVFGNWHLRTLQSLEAKRFRDFMLCHRILRSWRLQAGAVLIIKGIDVNIVKQRFHCWLLLERLELVLRYRNNSIKLKVLKHWFIRSRRSFRHNWALHKEAVSYDCARTQIKALFSWQRRLKSHRQDEQNAQGIYKQRKQKEYFSKYLAALFEYSQNYHLACKTYERSVVTRTLLEWRDEAYRRKFKRLAATYREQKRKFNHQRLKVVFVFWRSRYAEVVNDQQLALSMITQRDLLVKKSTFHGWASKIDHFESELDRAIYTYNANLLSLAIEKWRQKNTKIQQDNDMAGLRDMNQQWSLLGKVLRGWSYKVSERKRDYSLADDIYSKRQRSKFGRIWKLWHAKYSEQTLMRQFGQTNIGFTELEENKSPTARFKNPTQNIPHTIARIPQGASGSPDTRHFLTSITKPSTLFNTSLLETPTRARASGINVPLTAVEQWRKMKSSSKLRNKLSDSNESNEPNDPEMNLTDN
SIO_010081: AWJ20_2060
subclass of: SO_0000673
so part of: AWJ20_2060
location: complement(276531..279335)
location: region:276531-279335:-1
so has part: feature:276531-279335:-1:exon

XP_018736946.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:276531-279335:-1:exon

AWJ20_2061
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: OST1
locus tag: AWJ20_2061
so part of: sequence
location: <280181..>281587
location: region:280181-281587:1
so has part: feature:280181-281587:1:exon
subclass of: SO_0000010

30033931
type: Gene
SIO_000068: ncbigene

position:280181:1
position: 280181
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:281587:1
position: 281587
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:280181-281587:1:exon

AWJ20_2061
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: OST1
locus tag: AWJ20_2061
product: Ost1p
transcript id: XM_018878989.1
SIO_010081: AWJ20_2061
subclass of: SO_0000673
so part of: AWJ20_2061
location: <280181..>281587
location: region:280181-281587:1
so has part: feature:280181-281587:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:280181-281587:1:exon

AWJ20_2061
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: OST1
locus tag: AWJ20_2061
inference: similar to AA sequence:KEGG_Orthology:K12666
note: Alpha subunit of the oligosaccharyltransferase complex of the ER lumen; complex catalyzes asparagine-linked glycosylation of newly synthesized proteins; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IPI] [PMID 10358084]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IPI] [PMID 16297388]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IPI] [PMID 9405463]; GO_function: GO:0004579 - dolichyl-diphosphooligosaccharide-protein glycotransferase activity [Evidence IEA]; GO_function: GO:0004579 - dolichyl-diphosphooligosaccharide-protein glycotransferase activity [Evidence IDA] [PMID 9015380]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IDA] [PMID 9015380]; GO_process: GO:0018279 - protein N-linked glycosylation via asparagine [Evidence IPI] [PMID 9988747]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA,IEA]
codon start: 1
product: Ost1p
translation: MRLVNLLQVSVALFSVASAESIIPKTFENVQLTQSIDLTGSYLKRSLDITARNIADEPQQVYIVAVDSKAFPNLSILEGQDKSTGRSVLARRIEDAHDDGVEYYQLSLREPVQPGEELNLLVAEAYSGLLSPLPEVGGQDDEQYLVYSGSKYALSPYDTLVSSLKIKIYGTYAEELTIGDDEPEQATVEGSGHILSFGEYKELAPLSSKPFKLRYSNPRPLVRADKLERDIWVSHWGASVSIEETYWLTNIGTRLKDSFSRLDYNKGQSQYNLNVASIRQLRFPLGPNARDAYYTDLVGNVSTSHFRSNGQESILEIAPRYPVFGGWHYNFTVGWSHDLSDFVKDVGNENYLLKIPIIQGPQDISYGEVDVRVILPEGASDIQVVSLFGASTDISNTYSFLDTKGRPTVEFKYNNLIDGHRSGEFFVQYTYTTGDSLRKPLAIALTFASFFTLFLVFDKIDVSIFRKK
SIO_010081: AWJ20_2061
subclass of: SO_0000673
so part of: AWJ20_2061
location: 280181..281587
location: region:280181-281587:1
so has part: feature:280181-281587:1:exon

XP_018736947.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:280181-281587:1:exon

AWJ20_2062
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2062
so part of: sequence
location: complement(<281858..>283507)
location: region:281858-283507:-1
so has part: feature:281858-283507:-1:exon
subclass of: SO_0000010

30033932
type: Gene
SIO_000068: ncbigene

position:281858:-1
position: 281858
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:283507:-1
position: 283507
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:281858-283507:-1:exon

AWJ20_2062
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2062
product: hypothetical protein
transcript id: XM_018878990.1
SIO_010081: AWJ20_2062
subclass of: SO_0000673
so part of: AWJ20_2062
location: complement(<281858..>283507)
location: region:281858-283507:-1
so has part: feature:281858-283507:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:281858-283507:-1:exon

AWJ20_2062
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2062
inference: similar to AA sequence:KEGG_Orthology:K02605
codon start: 1
product: hypothetical protein
translation: MVSISSKECPNLKTALKLIVARLTESQSAQGGSAAEDNVADEEKDEDLEGEDVPMGANDIRYDRRLRYDLDILAQWCNKQVRSEAVTSLDQLRIVISIQDADSFQVSILTGLIEMMQSYITTIPLKLMLNVATSLEVFQEKLPRKCIRLLRGKAFQAQMAEGIMKILRETLFKYDESTLLLSPDLFNSLVHRQKQSLESVDTFISSLKYIFMAHYYSNPFSVLTTGNEHVNGFITSQHLRALRMLPSFKTFVERKLEQGSYSEAAKLLEDDDYLKSLISISIEEFREYARNVLSSIEIIIQLEQSLGYEESCEFRNTMDLYPAALSGELINLPKGRRGTTFIDSLISKVRKLDDESEMPFIVDQLETICHDDKSGVAWDIYSRFQEKCHSALDASQPLNMANIFADTLETHFKFALVSYKEMFLYEVLLSDLFTLQENVFLPTYRGALELGLSNPKHYWGDVTESTAQAPHISVLYQLYRESSVFINIFDYYSVFKGLIHRPDNLADDEWDRKSLAWFLQGIAELKFIGIIRDSKRKFECVEKIAWKDL
SIO_010081: AWJ20_2062
subclass of: SO_0000673
so part of: AWJ20_2062
location: complement(281858..283507)
location: region:281858-283507:-1
so has part: feature:281858-283507:-1:exon

XP_018736948.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:281858-283507:-1:exon

AWJ20_2063
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2063
so part of: sequence
location: complement(<285387..>285484)
location: region:285387-285484:-1
so has part: feature:285387-285484:-1:exon
subclass of: SO_0000663

30033933
type: Gene
SIO_000068: ncbigene

position:285387:-1
position: 285387
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:285484:-1
position: 285484
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:285387-285484:-1:exon

AWJ20_2063
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_2063
product: tRNA-Leu
SIO_010081: AWJ20_2063
subclass of: SO_0000673
so part of: AWJ20_2063
location: complement(<285387..>285484)
location: region:285387-285484:-1
so has part: feature:285387-285484:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:285387-285484:-1:exon

AWJ20_2064
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: FRE2
locus tag: AWJ20_2064
so part of: sequence
location: complement(<285954..>286562)
location: region:285954-286562:-1
so has part: feature:285954-286562:-1:exon
subclass of: SO_0000010

30033934
type: Gene
SIO_000068: ncbigene

position:285954:-1
position: 285954
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:286562:-1
position: 286562
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:285954-286562:-1:exon

AWJ20_2064
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: FRE2
locus tag: AWJ20_2064
product: Fre2p
transcript id: XM_018878991.1
SIO_010081: AWJ20_2064
subclass of: SO_0000673
so part of: AWJ20_2064
location: complement(<285954..>286562)
location: region:285954-286562:-1
so has part: feature:285954-286562:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:285954-286562:-1:exon

AWJ20_2064
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: FRE2
locus tag: AWJ20_2064
note: Ferric reductase and cupric reductase; reduces siderophore-bound iron and oxidized copper prior to uptake by transporters; expression induced by low iron levels but not by low copper levels; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8164662]; GO_function: GO:0052851 - ferric-chelate reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence IDA] [PMID 8164662]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0015677 - copper ion import [Evidence IDA] [PMID 9153234]; GO_process: GO:0006825 - copper ion transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0006826 - iron ion transport [Evidence IDA] [PMID 8164662]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]
codon start: 1
product: Fre2p
translation: MSILSEQENRTKTMPVMVEGFYKSFRQFSNYDNVMLVAGGTGITTAFSQVTSLLFQDRSRTIKLIWAVRSPAPLNWFSKEILYLRSWPKSIELQIYISQALFENDCGAKPCSPLDIEAGVQGVVGSQALDYGCGSNYQLAFITGGRPELQKEIANFIKHASGSIAICSCGPPTFIDRARYTFVHNMYKSDYHIDYFEEPYSC
SIO_010081: AWJ20_2064
subclass of: SO_0000673
so part of: AWJ20_2064
location: complement(285954..286562)
location: region:285954-286562:-1
so has part: feature:285954-286562:-1:exon

XP_018736949.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:285954-286562:-1:exon

AWJ20_2065
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2065
so part of: sequence
location: complement(<288477..>289481)
location: region:288477-289481:-1
so has part: feature:288477-289481:-1:exon
subclass of: SO_0000010

30033935
type: Gene
SIO_000068: ncbigene

position:288477:-1
position: 288477
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:289481:-1
position: 289481
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:288477-289481:-1:exon

AWJ20_2065
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2065
product: hypothetical protein
transcript id: XM_018878992.1
SIO_010081: AWJ20_2065
subclass of: SO_0000673
so part of: AWJ20_2065
location: complement(<288477..>289481)
location: region:288477-289481:-1
so has part: feature:288477-289481:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:288477-289481:-1:exon

AWJ20_2065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2065
codon start: 1
product: hypothetical protein
translation: MSSHVQQSIPPGLLSLLVTKYEEKSKKHAIQNLYRLQVESYKNDSGKYECPICQKSYVHFKHLRRHNRQHTGYRPHVCHICRDTFCRSDILKRHYERCFSKFIATGKLSAKSRVPKVSKEYVQSANSPPLTDTPLPDQHLSTTDPVTLPGNMMGGTDTNSKLNYTPTFYPAHPSPPSLDYIQSRDEFRQVVPRQPIYSSDNISIMPIDSPEYISSPGPPNCPGAGPLIKQEELTPPAFESYSARDSCTSLVSPVSLDETVNSLPITGIVDDTPPTENEYFPRFVSNIRKPGQFYCEDTYGYRPDQTTIIANGPRIISVSSASNDIVLRWLEPDW
SIO_010081: AWJ20_2065
subclass of: SO_0000673
so part of: AWJ20_2065
location: complement(288477..289481)
location: region:288477-289481:-1
so has part: feature:288477-289481:-1:exon

XP_018736950.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:288477-289481:-1:exon

AWJ20_2066
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2066
so part of: sequence
location: <292168..>293631
location: region:292168-293631:1
so has part: feature:292168-293631:1:exon
subclass of: SO_0000010

30033936
type: Gene
SIO_000068: ncbigene

position:292168:1
position: 292168
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:293631:1
position: 293631
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:292168-293631:1:exon

AWJ20_2066
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2066
product: hypothetical protein
transcript id: XM_018878993.1
SIO_010081: AWJ20_2066
subclass of: SO_0000673
so part of: AWJ20_2066
location: <292168..>293631
location: region:292168-293631:1
so has part: feature:292168-293631:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:292168-293631:1:exon

AWJ20_2066
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2066
codon start: 1
product: hypothetical protein
translation: MAKNRKKNWQQEYGHEAGRLTRSKSQALKKILDTPGDRNNDDEFPVLKRLSLYASSIKGDGNCLFRSFSDQYYGDNGDRHQEVRAEVVNYMKEHSDYFALFLEGSGSGNESWPAYIKRMAKDGVYGDNLEIVAFARRYGVNVMIYQNDFMYVVSCQEDDKEKNGVVRDIHIAYHTWEHYSSVRNLAGPHSGLPEVQPSLVEGGGAIEPSSGTSDDVPKWMMDAIKRSIPYPPTEQMENLIVKLFRKYNNSHDFGRIVEEIIMMDNGDGEVNFDTDVEVVDSLSDIDKPTTTSMIDQDKVTNDSSAKSIQKDQDTSVQVANSPETSMGVDEINSSMSNSPEDSSSRSSSTSNTSSTTVASSVDDEGDESKGEAKLSNINGKRNSSLLSNELTEESESDRTHEISVIPRSRAKKDAVTNSAPRVKRLTAREKKERQKKEAAERKRASKISSVSDRSRSTTAGLSDTSSSTTTATPSTTPSTPGIRTMYI
SIO_010081: AWJ20_2066
subclass of: SO_0000673
so part of: AWJ20_2066
location: 292168..293631
location: region:292168-293631:1
so has part: feature:292168-293631:1:exon

XP_018736951.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:292168-293631:1:exon

AWJ20_2067
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TRX1
locus tag: AWJ20_2067
so part of: sequence
location: complement(<294890..>295204)
location: region:294890-295204:-1
so has part: feature:294890-295204:-1:exon
subclass of: SO_0000010

30033937
type: Gene
SIO_000068: ncbigene

position:294890:-1
position: 294890
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:295204:-1
position: 295204
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:294890-295204:-1:exon

AWJ20_2067
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TRX1
locus tag: AWJ20_2067
product: thioredoxin TRX1
transcript id: XM_018878994.1
SIO_010081: AWJ20_2067
subclass of: SO_0000673
so part of: AWJ20_2067
location: complement(<294890..>295204)
location: region:294890-295204:-1
so has part: feature:294890-295204:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:294890-295204:-1:exon

AWJ20_2067
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TRX1
locus tag: AWJ20_2067
inference: similar to AA sequence:KEGG_Orthology:K03671
note: Cytoplasmic thioredoxin isoenzyme; part of thioredoxin system which protects cells against oxidative and reductive stress; forms LMA1 complex with Pbi2p; acts as a cofactor for Tsa1p; required for ER-Golgi transport and vacuole inheritance; with Trx2p, facilitates mitochondrial import of small Tims Tim9p, Tim10p, Tim13p by maintaining them in reduced form; abundance increases iunder DNA replication stress; TRX1 has a paralog, TRX2, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 8603912]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IPI] [PMID 9657146]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0015036 - disulfide oxidoreductase activity [Evidence IDA] [PMID 19362171]; GO_function: GO:0015036 - disulfide oxidoreductase activity [Evidence ISS] [PMID 1988444]; GO_function: GO:0015035 - protein disulfide oxidoreductase activity [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IDA] [PMID 9813082]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IEA]; GO_process: GO:0045454 - cell redox homeostasis [Evidence TAS] [PMID 11169096]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence ISS] [PMID 1988444]; GO_process: GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0006662 - glycerol ether metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0080058 - protein deglutat…
codon start: 1
product: thioredoxin TRX1
translation: MTVNPITSLSQFQEEIKFSGLTVIDFYATWCGPCKMISPVLDRISDATPSAHFFKVDVDAVPDVASENEISAMPTLLFFKNGVKVESVVGANIAKINAVVKDLA
SIO_010081: AWJ20_2067
subclass of: SO_0000673
so part of: AWJ20_2067
location: complement(294890..295204)
location: region:294890-295204:-1
so has part: feature:294890-295204:-1:exon

XP_018736952.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:294890-295204:-1:exon

AWJ20_2068
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2068
so part of: sequence
location: <294927..>295127
location: region:294927-295127:1
so has part: feature:294927-295127:1:exon
subclass of: SO_0000010

30033938
type: Gene
SIO_000068: ncbigene

position:294927:1
position: 294927
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:295127:1
position: 295127
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:294927-295127:1:exon

AWJ20_2068
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2068
product: hypothetical protein
transcript id: XM_018878995.1
SIO_010081: AWJ20_2068
subclass of: SO_0000673
so part of: AWJ20_2068
location: <294927..>295127
location: region:294927-295127:1
so has part: feature:294927-295127:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:294927-295127:1:exon

AWJ20_2068
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2068
codon start: 1
product: hypothetical protein
translation: MLAPTTDSTLTPFLKNNKVGMAEISFSEATSGTASTSTLKKWAEGVASEILSRTGEIILQGPHQVA
SIO_010081: AWJ20_2068
subclass of: SO_0000673
so part of: AWJ20_2068
location: 294927..295127
location: region:294927-295127:1
so has part: feature:294927-295127:1:exon

XP_018736953.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:294927-295127:1:exon

AWJ20_2069
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2069
so part of: sequence
location: <296328..>296669
location: region:296328-296669:1
so has part: feature:296328-296669:1:exon
subclass of: SO_0000010

30033939
type: Gene
SIO_000068: ncbigene

position:296328:1
position: 296328
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:296669:1
position: 296669
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:296328-296669:1:exon

AWJ20_2069
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2069
product: hypothetical protein
transcript id: XM_018878996.1
SIO_010081: AWJ20_2069
subclass of: SO_0000673
so part of: AWJ20_2069
location: <296328..>296669
location: region:296328-296669:1
so has part: feature:296328-296669:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:296328-296669:1:exon

AWJ20_2069
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2069
codon start: 1
product: hypothetical protein
translation: MGVESLTICSANLDKNVTKEHIYSLFLPFGPIVDVVPVTDPKHGFRGSADIEFETEEDAAAAIDNMEGAQVFGKTLHVRLSRKDLSEGAPRVDMNKALWAQDHEQDQPSTEPE
SIO_010081: AWJ20_2069
subclass of: SO_0000673
so part of: AWJ20_2069
location: 296328..296669
location: region:296328-296669:1
so has part: feature:296328-296669:1:exon

XP_018736954.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:296328-296669:1:exon

AWJ20_2070
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2070
so part of: sequence
location: complement(<301055..>302038)
location: region:301055-302038:-1
so has part: feature:301055-302038:-1:exon
subclass of: SO_0000010

30033941
type: Gene
SIO_000068: ncbigene

position:301055:-1
position: 301055
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:302038:-1
position: 302038
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:301055-302038:-1:exon

AWJ20_2070
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2070
product: hypothetical protein
transcript id: XM_018878998.1
SIO_010081: AWJ20_2070
subclass of: SO_0000673
so part of: AWJ20_2070
location: complement(<301055..>302038)
location: region:301055-302038:-1
so has part: feature:301055-302038:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:301055-302038:-1:exon

AWJ20_2070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2070
codon start: 1
product: hypothetical protein
translation: MASGAKYRPQRWRREARGLEDSFSKLNIEGESHAEADAKARARRERFSQPAKKEEYGLISRGEDNRLRVDSKARRTYFYQTQLRALKIIAASTSQRQYIEDVLKIVDHEVSDSYQAVDTNGRHQSSDTDSEDSVLMSLRKLREALLPIEPDKFTKQVFLFSVRMAVLAGKYQAFIPSVLYILDVIHPVVPLSFDEFRQVALLHVYHTAHFSNDVGTAYKTLYHYLPDDKRAWTVLQALASNNFVSWVQQKRTEPDLWLRLSLDQNHATMAKNAIPTISKSYMKLHESSIERLLGLDWNTLTSNPNIGCVWPKDSTGTATIRQRKTQS
SIO_010081: AWJ20_2070
subclass of: SO_0000673
so part of: AWJ20_2070
location: complement(301055..302038)
location: region:301055-302038:-1
so has part: feature:301055-302038:-1:exon

XP_018736955.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:301055-302038:-1:exon

AWJ20_2071
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TRP5
locus tag: AWJ20_2071
so part of: sequence
location: <303610..>305703
location: region:303610-305703:1
so has part: feature:303610-305703:1:exon
subclass of: SO_0000010

30033942
type: Gene
SIO_000068: ncbigene

position:303610:1
position: 303610
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:305703:1
position: 305703
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:303610-305703:1:exon

AWJ20_2071
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TRP5
locus tag: AWJ20_2071
product: tryptophan synthase TRP5
transcript id: XM_018878999.1
SIO_010081: AWJ20_2071
subclass of: SO_0000673
so part of: AWJ20_2071
location: <303610..>305703
location: region:303610-305703:1
so has part: feature:303610-305703:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:303610-305703:1:exon

AWJ20_2071
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TRP5
locus tag: AWJ20_2071
inference: similar to AA sequence:KEGG_Orthology:K01694
note: Tryptophan synthase; catalyzes the last step of tryptophan biosynthesis; regulated by the general control system of amino acid biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0004834 - tryptophan synthase activity [Evidence IEA,IEA]; GO_function: GO:0004834 - tryptophan synthase activity [Evidence IDA] [PMID 391563]; GO_function: GO:0004834 - tryptophan synthase activity [Evidence ISO] [PMID 6276387]; GO_function: GO:0004834 - tryptophan synthase activity [Evidence IDA] [PMID 6342605]; GO_process: GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000162 - tryptophan biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0000162 - tryptophan biosynthetic process [Evidence IMP] [PMID 10790693]; GO_process: GO:0006568 - tryptophan metabolic process [Evidence IEA]
codon start: 1
product: tryptophan synthase TRP5
translation: MSANLNATFAKCKKEGRNAMLTFLTAGFPSVAETVPLLKSLQDGGADIIELGVPFSDPIADGPTIQKANQIALENGVSVHVCLELVRQARAAGVNIPIILMGYYNPILQYGENKFVEDAKKAGVDGFLLVDLPPEEASRFRKISSNSGLSYIPLIAPSTTNERLAQLSEIADSFLYVVSRMGTTGVAGGLDSNVSTLLKRVRQFTGEKPLAVGFGISTRENYLTVSPVADGIVIGSYLISLIDNTPKEERLETVKKYINGIVGGREVVVDPRPESPSTTPVLSEDEEEQKKQFYALVDRFGDYGGQYVPEVLHQCLSELEKGFNEAIHDEKFWEELRSYYPYMGRPSNLYFADRLSEKVGGAKIWLKREDLNHTGSHKINNALAQVLIARRLGKTQVIAETGAGQHGVATATVAAKFGLKCKVFMGAEDCRRQALNVFRMKLLGAEVVPVHAGTKTLRDACSEALRTWVTTIGDTHYVLGSATGPHPFPTMVRTFQSVIGQETKEQFAKYNDGKLPDVVVACVGGGSNCSGMFAPFIEDKSVKLVGVEAGGEGLQTDKHSATLSAGKSGVLHGAKTYVLQNADGQVQDTHSISAGLDYPGVGPELASWKDSGRVKFIAATDLEALQGFRILSETEGIIPAMESSHAIHGAVELAKTMSPDEHVVICLSGRGDKDVQNIADLLPTYGPKLGWDVRFEN
SIO_010081: AWJ20_2071
subclass of: SO_0000673
so part of: AWJ20_2071
location: 303610..305703
location: region:303610-305703:1
so has part: feature:303610-305703:1:exon

XP_018736956.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:303610-305703:1:exon

AWJ20_2072
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2072
so part of: sequence
location: <305901..>308699
location: region:305901-308699:1
so has part: feature:305901-308699:1:exon
subclass of: SO_0000010

30033943
type: Gene
SIO_000068: ncbigene

position:305901:1
position: 305901
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:308699:1
position: 308699
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:305901-308699:1:exon

AWJ20_2072
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2072
product: hypothetical protein
transcript id: XM_018879000.1
SIO_010081: AWJ20_2072
subclass of: SO_0000673
so part of: AWJ20_2072
location: <305901..>308699
location: region:305901-308699:1
so has part: feature:305901-308699:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:305901-308699:1:exon

AWJ20_2072
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2072
codon start: 1
product: hypothetical protein
translation: MWPSWRSQGPKLGYGHDGFGIYVPHLVPETPWLFARRHDLGYKFQSTGILKTYDASQDYRVINKKVDMDIIDDVKRRGQRLGELNPLQGDYIPNDLLTSYNSESYGFLHRTKHDPLKGSCIAIGSIRETVSSEGADSKTESDLQESAEEYSDEEESDFNSRQAIAYVNGKDQYQVKFGFIDKASSEFSSANGSSYYANMPDINVATSFNVNSPVMQVEFAEPEPEISPYMLVRSKNGTKILSVTSENDKIAVYDLLDIPFQSKQAYNFETLSRPVEHCHSTFNPWNYANVATINSQGVWSLWDLSSEQSLVSLSSPTTMSAFNRHSQTSSPWNKIIWGADSSSLYSINRKYLQLFDIRSDSATSSKGDTVLECTDRETHFRDMARSKINDNQFFVLDSKSVKWMDMRNPGSVLLSWDHFLDLEDTTIKLTVNGIKDNVHVVGVYSQIHQANFLYQFVESEGLPSSADDPILIVSPPDELAQSLELIPFTAEGNDGDIEMINLVRLPVDGALQGEILTSDPDYQSENHTNNIDNGINSDIVNSANGVVKANKNTEYIESISVETDDVRYKFDYILPDLVPVSKLDFRAVYEFLFENLSQIPEETSKDEDIENFARHLGETINSMFIAKQSTSKSTGMNEDPDIRKRRTLTLLELSEIGTPLLRLYNNLEDLSALIHQLTDHYKDTKISVKELRRDMNTLFGGEFVNNIQNNYDYLLSIWTNSLNTQTLGPERVAELTAQRKKLALYIIIRLTLTSVGVYVEGESKPILQDTHLLKPLSKYTQVRNPHDFNLTANTELLLDEWELGTNVDDYKWYRLGDTPMEDDTSSSVPDRYQQIMSQLSQHSQRMISPQPVRVRSSRAKTTASSQPVGSNPFSSPIQSTTRLATSSRSSSQRVAPLQSSQSNMQRMAQSQPIQGESSQRRLKRKKRNEGFG
SIO_010081: AWJ20_2072
subclass of: SO_0000673
so part of: AWJ20_2072
location: 305901..308699
location: region:305901-308699:1
so has part: feature:305901-308699:1:exon

XP_018736957.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:305901-308699:1:exon

AWJ20_2073
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CWH41
locus tag: AWJ20_2073
so part of: sequence
location: <309160..>311664
location: region:309160-311664:1
so has part: feature:309160-311664:1:exon
subclass of: SO_0000010

30033944
type: Gene
SIO_000068: ncbigene

position:309160:1
position: 309160
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:311664:1
position: 311664
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:309160-311664:1:exon

AWJ20_2073
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CWH41
locus tag: AWJ20_2073
product: Cwh41p
transcript id: XM_018879001.1
SIO_010081: AWJ20_2073
subclass of: SO_0000673
so part of: AWJ20_2073
location: <309160..>311664
location: region:309160-311664:1
so has part: feature:309160-311664:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:309160-311664:1:exon

AWJ20_2073
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CWH41
locus tag: AWJ20_2073
inference: similar to AA sequence:KEGG_Orthology:K01228
note: Processing alpha glucosidase I; ER type II integral membrane N-glycoprotein involved in assembly of cell wall beta 1,6 glucan and asparagine-linked protein glycosylation; also involved in ER protein quality control and sensing of ER stress; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 8576053]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004573 - mannosyl-oligosaccharide glucosidase activity [Evidence IEA,IEA]; GO_function: GO:0004573 - mannosyl-oligosaccharide glucosidase activity [Evidence IDA] [PMID 14680956]; GO_function: GO:0004573 - mannosyl-oligosaccharide glucosidase activity [Evidence IMP,ISS] [PMID 9430631]; GO_process: GO:0009272 - fungal-type cell wall biogenesis [Evidence IMP] [PMID 9430631]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009311 - oligosaccharide metabolic process [Evidence IEA]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 9363442]
codon start: 1
product: Cwh41p
translation: MNCQSRRRPSPYNWSQFNHKLKMVHWPHFLSLANLIALSWLCVVFVSSSPQSVLKSAPLINEYARQSNSSLLWGPYRSNLYFGIRPRIPKSLLSGLMWYNADSYDGLKNLRHTCEQGDAMAGYGWQQYDPRSGGHQVINDLDNFVNISTDFVKTEVGSWAVRVKGVPQNEQRRTTVIFYSGLEGHGKLDLESQLTPEGIEGPVELVGSSPELGDFSIEVTTGPSTNRHPKTSHVVDKVRPSQNSHYASLMMPDDNVWLAKEVFQTFIEDNVSQFSALFDEADMIPPWSVFTLQNRDDLKGNVHMIQRTYQGSFEFDILYNPIEISESSKISSRKLGDLLELSLSEFDTKFKRAFQFQPPFDSSLKHELFAKEMFSNLVGGIGYFYGTSIVDRSLSDLDDDEGDWEVEAAALASGVGKEEGPFELFTAVPSRPFFPRGFYWDEGFHLIPVLDYDADLTLEVLKSWFSLVDGDGWIAREQILGPEARSKVPTEFRTQYPHYANPPTLMLLFSNIAKRAHEWSQSEHGTNFDGSLVLGNAHIEYPELLFSYAEKIYPELQSHYEWFRRTQKGEIRQWDREAFSSKEGYRWRGRTPNHCLTSGLDDYPRAAMPHPGELHVDLLSWIGMMTRSIKEIARVLGKDDDVEMYSEIEEAIVKNLYDLHWDHKEQMYCDSTIDDYEESVHVCHRGYVSLFPFMLQLIPEDSTEQLLAAINDIKDPGGLWSPYGIRSLSKSDEFFGTKENYWRGPIWINMNYMILESLRYYGTSETSSAEVKSLSSEIYKELRVNIVNNVFNRWEETGFAWEQYDSNTGKAQGVKHFLGWTSLVIKIMAMPEEL
SIO_010081: AWJ20_2073
subclass of: SO_0000673
so part of: AWJ20_2073
location: 309160..311664
location: region:309160-311664:1
so has part: feature:309160-311664:1:exon

XP_018736958.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:309160-311664:1:exon

AWJ20_2074
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RTC2
locus tag: AWJ20_2074
so part of: sequence
location: complement(<311800..>312810)
location: region:311800-312810:-1
so has part: feature:311800-312810:-1:exon
subclass of: SO_0000010

30033945
type: Gene
SIO_000068: ncbigene

position:311800:-1
position: 311800
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:312810:-1
position: 312810
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:311800-312810:-1:exon

AWJ20_2074
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RTC2
locus tag: AWJ20_2074
product: Rtc2p
transcript id: XM_018879002.1
SIO_010081: AWJ20_2074
subclass of: SO_0000673
so part of: AWJ20_2074
location: complement(<311800..>312810)
location: region:311800-312810:-1
so has part: feature:311800-312810:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:311800-312810:-1:exon

AWJ20_2074
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RTC2
locus tag: AWJ20_2074
note: Putative vacuolar membrane transporter for cationic amino acids; likely contributes to amino acid homeostasis by exporting cationic amino acids from the vacuole; positive regulation by Lys14p suggests that lysine may be the primary substrate; member of the PQ-loop family, with seven transmembrane domains; similar to mammalian PQLC2 vacuolar transporter; RTC2 has a paralog, YPQ1, that arose from the whole genome duplication; GO_component: GO:0071627 - integral component of fungal-type vacuolar membrane [Evidence IDA] [PMID 23169667]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015326 - cationic amino acid transmembrane transporter activity [Evidence IMP,ISA] [PMID 23169667]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0034488 - basic amino acid transmembrane export from vacuole [Evidence IMP,ISA] [PMID 23169667]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Rtc2p
translation: MLENIDPPSHLRVVLSGMAGSSSLACWIVLLLPQLIEQWRLKSADGISIGFLIIWLLGDVTNLAGSLWANLRPEVILLAVWYCIADSLIMVSYFYYKRLARLRQARKAHKHKQHRPSSGDDHEEDPTAPLLDRRNSANRKRPSTSAINEDDEVNTNGPSHHEHHEHRHHHHHNQTRRDSLTSIVLETSSSSGIFSKVVLPVLFVIASGILGYLVSGNQSDNTGEISDEPLALGPQILGYTSAVLYLSARIPQIIQNHQRRSTHGLSLVFFVFSVLGNATYAAGILLYRTDIQWVTLYFPWLLGSLGTILEDCVIFLQFYMYDSEHKDEDSESAVHD
SIO_010081: AWJ20_2074
subclass of: SO_0000673
so part of: AWJ20_2074
location: complement(311800..312810)
location: region:311800-312810:-1
so has part: feature:311800-312810:-1:exon

XP_018736959.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:311800-312810:-1:exon

AWJ20_2075
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RPL8B
locus tag: AWJ20_2075
so part of: sequence
location: <314581..>315369
location: region:314581-315369:1
so has part: feature:314581-315369:1:exon
subclass of: SO_0000010

30033946
type: Gene
SIO_000068: ncbigene

position:314581:1
position: 314581
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:315369:1
position: 315369
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:314581-315369:1:exon

AWJ20_2075
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RPL8B
locus tag: AWJ20_2075
product: ribosomal 60S subunit protein L8B
transcript id: XM_018879003.1
SIO_010081: AWJ20_2075
subclass of: SO_0000673
so part of: AWJ20_2075
location: <314581..>315369
location: region:314581-315369:1
so has part: feature:314581-315369:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:314581-315369:1:exon

AWJ20_2075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RPL8B
locus tag: AWJ20_2075
inference: similar to AA sequence:KEGG_Orthology:K02936
note: Ribosomal 60S subunit protein L8B; required for processing of 27SA3 pre-rRNA to 27SB pre-rRNA during assembly of large ribosomal subunit; depletion leads to a turnover of pre-rRNA; L8 binds to Domain I of 25S and 5.8 S rRNAs; mutation results in decreased amounts of free 60S subunits; homologous to mammalian ribosomal protein L7A, no bacterial homolog; RPL8B has a paralog, RPL8A, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 11983894]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA,IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 11983894]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 11983894]; GO_process: GO:0000470 - maturation of LSU-rRNA [Evidence IMP] [PMID 22893726]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]
codon start: 1
product: ribosomal 60S subunit protein L8B
translation: MTQPAKGKKPAPAPFSTKTASTKAAKNPLIEKRPRNFGIGQDIQPKRNLSRFVKWPEYVRLQRQKKILNLRLKVPPAIAQFQNTLDKNTAAQAFKIFNKYRPETAAEKKERLTKEAAAIAEGKKKEDVSEKPYVVKYGLNHVVSLIENKKPQLVLIANDVDPIELVVFLPALCRKMGVPYAIIKGKARLGTLVHKKTAAVVALTEVKSDDKAALSTLLSTIEANYSSKYEELRRKWGGGIMGAKAQAKIEKRRKILEAAVKV
SIO_010081: AWJ20_2075
subclass of: SO_0000673
so part of: AWJ20_2075
location: 314581..315369
location: region:314581-315369:1
so has part: feature:314581-315369:1:exon

XP_018736960.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:314581-315369:1:exon

AWJ20_2076
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2076
so part of: sequence
location: <315607..>317217
location: region:315607-317217:1
so has part: feature:315607-317217:1:exon
subclass of: SO_0000010

30033947
type: Gene
SIO_000068: ncbigene

position:315607:1
position: 315607
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:317217:1
position: 317217
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:315607-317217:1:exon

AWJ20_2076
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2076
product: putative membrane protein
transcript id: XM_018879004.1
SIO_010081: AWJ20_2076
subclass of: SO_0000673
so part of: AWJ20_2076
location: <315607..>317217
location: region:315607-317217:1
so has part: feature:315607-317217:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:315607-317217:1:exon

AWJ20_2076
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2076
note: similar to Pantoea sp. aB, conserved hypothetical protein (NCBI: ZP_07377486.1)
codon start: 1
product: putative membrane protein
translation: MSSSLVPDRTPGSMSQYSKINLVSYLLLCLFVISFLVFLNSTQPFVLTDILGDDVNIGDKVGSLAFADEIVSIVLCPLWGSLSDKVGTRPVSVIGLLILSTSLFFYTTGNSVYPDLLLLRMFFAVGTSACVSMIPAILAELSASYEESKFDGYRQVEDMNWGDDVSNDEENDALEAIEERNAYFDDPTVVSRDTPFFEQSEASPKSYRNAKLAGLVGVVTGIGAVLSVSLFLPLPTWLDRNSGGENDAKIALRNSYYIVSAIAFFVSILLFLGLHKDRSKSFRLWLNGGSVSIFDEAALDTMPDSLPYFQTIKMGFLAAKDRQVALSYVGGLVARSATVALTLFVPLAVNFYFYEQGICKVGDPHDALPDVKKGCHEAYVLAAILTGIANTVSLVFAPIWGLLGDYIGQHGSLMVSALVGFTGCIGFAFVEKPNSPVSFVMACFLGAGQIGAIVLSMSMCTNSRRQYNGSISGVYSLSGGLGILLITKVGGYISDIWKGAPFVILAGFYFLLCIAIIWALPKGESKGFSRLFSPPR
SIO_010081: AWJ20_2076
subclass of: SO_0000673
so part of: AWJ20_2076
location: 315607..317217
location: region:315607-317217:1
so has part: feature:315607-317217:1:exon

XP_018736961.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:315607-317217:1:exon

AWJ20_2077
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2077
so part of: sequence
location: <317638..>317724
location: region:317638-317724:1
so has part: feature:317638-317724:1:exon
subclass of: SO_0000663

30033948
type: Gene
SIO_000068: ncbigene

position:317638:1
position: 317638
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:317724:1
position: 317724
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:317638-317724:1:exon

AWJ20_2077
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_2077
product: tRNA-Tyr
SIO_010081: AWJ20_2077
subclass of: SO_0000673
so part of: AWJ20_2077
location: <317638..>317724
location: region:317638-317724:1
so has part: feature:317638-317724:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:317638-317724:1:exon

AWJ20_2078
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RPL2A
locus tag: AWJ20_2078
so part of: sequence
location: <318406..>319170
location: region:318406-319170:1
so has part: feature:318406-319170:1:exon
subclass of: SO_0000010

30033949
type: Gene
SIO_000068: ncbigene

position:318406:1
position: 318406
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:319170:1
position: 319170
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:318406-319170:1:exon

AWJ20_2078
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RPL2A
locus tag: AWJ20_2078
product: ribosomal 60S subunit protein L2A
transcript id: XM_018879005.1
SIO_010081: AWJ20_2078
subclass of: SO_0000673
so part of: AWJ20_2078
location: <318406..>319170
location: region:318406-319170:1
so has part: feature:318406-319170:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:318406-319170:1:exon

AWJ20_2078
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RPL2A
locus tag: AWJ20_2078
inference: similar to AA sequence:KEGG_Orthology:K02938
note: Ribosomal 60S subunit protein L2A; homologous to mammalian ribosomal protein L2 and bacterial L2; RPL2A has a paralog, RPL2B, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 18782943]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 18782943]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IDA] [PMID 18782943]; GO_process: GO:0006412 - translation [Evidence IEA]
codon start: 1
product: ribosomal 60S subunit protein L2A
translation: MGRVIRNQRKGAGSIFTSHTRLRKGAAKLRTLDFAERHGYIRGVVKKILHDPGRGAPLATVAFRDPYKYKVREETFIANEGVYTGQFIYAGKKASLNVGNVLPLGSVPEGTILSNVEEKVGDRGALGRTSGNYVIVIGHNPEEGKTRLKLPSGAKKIVSSQARGVVGVVAGGGRIDKPLLKAGNAFHKFKVKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVAGQKAGLIAARRTGLLRGTQKTKD
SIO_010081: AWJ20_2078
subclass of: SO_0000673
so part of: AWJ20_2078
location: 318406..319170
location: region:318406-319170:1
so has part: feature:318406-319170:1:exon

XP_018736962.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:318406-319170:1:exon

AWJ20_2079
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SMC2
locus tag: AWJ20_2079
so part of: sequence
location: <319897..>323022
location: region:319897-323022:1
so has part: feature:319897-323022:1:exon
subclass of: SO_0000010

30033950
type: Gene
SIO_000068: ncbigene

position:319897:1
position: 319897
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:323022:1
position: 323022
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:319897-323022:1:exon

AWJ20_2079
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SMC2
locus tag: AWJ20_2079
product: condensin subunit SMC2
transcript id: XM_018879006.1
SIO_010081: AWJ20_2079
subclass of: SO_0000673
so part of: AWJ20_2079
location: <319897..>323022
location: region:319897-323022:1
so has part: feature:319897-323022:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:319897-323022:1:exon

AWJ20_2079
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SMC2
locus tag: AWJ20_2079
inference: similar to AA sequence:KEGG_Orthology:K06674
note: Subunit of the condensin complex; condensin reorganizes chromosomes during both mitosis and meiosis; essential SMC chromosomal ATPase family member that forms a subcomplex with Smc2p that has ATP-hydrolyzing and DNA-binding activity, but other condensin subunits are required for chromatin binding; required for clustering of tRNA genes at the nucleolus; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA,IEA]; GO_component: GO:0000796 - condensin complex [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0000799 - nuclear condensin complex [Evidence IDA] [PMID 10811823]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003680 - AT DNA binding [Evidence IDA] [PMID 9727028]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IDA] [PMID 9727028]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 12719426]; GO_function: GO:0000217 - DNA secondary structure binding [Evidence IDA] [PMID 9727028]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 16055730]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 9727028]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0030261 - chromosome condensation [Evidence IEA]; GO_process: GO:0051276 - chromosome organization [Evidence IEA]; GO_process: GO:0010032 - meiotic chromosome condensation [Evidence IC] [PMID 10811823]; GO_process: GO:0051307 - meiotic chromosome separation [Evidence IC] [PMID 10811823]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IEA]; …
codon start: 1
product: condensin subunit SMC2
translation: MKVEEIIIDGFKSYATRTVISGWDASFNCITGLNGSGKSNILDAICFVLGITTMTTVRAQNLQDLIYKRGQAGVTRASVTILFDNSDKSNSPLGFEDQAQFSVTRQIVLGGTSKFLINGHRAQQQSVQQLFQSVQLNINNPNFLIMQGQITKVLNMKPAEILALIEEAAGTRMFEDRREKAIKTMTKKEKKVEEILNLLHDEIEPKLENLRNEKRTFIEYQQTLSSLERIEKMVVAHDYLKGSEKLLAHSQALEERKELLGNISASVDKLNSEIQNLEEELKRLRKTKEDQISKGGKFQALEKQYKGACQEVARIRTLLELKDSTLKEENEKRDELKSTLAEHESRLKKQSSQYSTIEKEYETVKAKHVRDNEEISRNEELLQSLQTGVSSKAGQETGYASQLQEVRTIVNNAKTTAAQAKVKQEHVEKLIKEDSAKVTKAQKQNQEMLNTLAGAEEYYNSLKSKLSQAGWDPETIKTLKTKEYELGEQIRSLDDEIESMRRKTSNIDFHYSKPSPTFRASSVRGLVAQLFSLDKSKYPQATAIEVCAGGRLFNVVVDNDVTAAQLLQNGKLKRRVTIIPLNKISSSRLSEERLSNAKKLAPGKVDLALNIVGYEADVFAAMEYVFGSTLICKDTATAQLVTFDPKVRAKSVTLDGDIYDPMGTLSGGSKSNSSGLLISLQQYNELSRLLKEKNEDLANVKEEIARENKLMAQFKDIKKELDLKEHEITLYKQQLESSPSALVLAKHEERVKELEELSLQISDANKQFEEGGIELSRIEKDMNEFKQNKGSKLGQLKAKVEKLRASYTQSEQVVKQKLEVFQTAQVEIEQLTDDVSTMKEQLEDKTNSIQDLAASIESINAQLKRAAQTESTYLQQLEAEKSALTGMDDELNTMEEIRDKKRKLVTEQGLESQKLRHEIENLSKEHESLQHAISGLDQKYEWIQDQKQHFGKIGTPYDFSHANVDQSRKQLRQLQERINGMKKTVNSKVMNMIESVEKKEESLKSMIQTIEKDKKKIEDTIVSLDNYKREALIKTWEKVSV
SIO_010081: AWJ20_2079
subclass of: SO_0000673
so part of: AWJ20_2079
location: 319897..323022
location: region:319897-323022:1
so has part: feature:319897-323022:1:exon

XP_018736963.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:319897-323022:1:exon

AWJ20_2080
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: QCR6
locus tag: AWJ20_2080
so part of: sequence
location: complement(<323724..>324818)
location: region:323724-324818:-1
so has part: feature:323724-324818:-1:exon
subclass of: SO_0000010

30033952
type: Gene
SIO_000068: ncbigene

position:323724:-1
position: 323724
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:324818:-1
position: 324818
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:323724-324818:-1:exon

AWJ20_2080
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: QCR6
locus tag: AWJ20_2080
product: ubiquinol--cytochrome-c reductase subunit 6
transcript id: XM_018879008.1
SIO_010081: AWJ20_2080
subclass of: SO_0000673
so part of: AWJ20_2080
location: complement(join(<323724..324203,324747..>324818))
location: region:323724-324818:-1
so has part: feature:324747-324818:-1:exon
so has part: feature:323724-324203:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:324747-324818:-1:exon

position:324747:-1
position: 324747
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:323724-324203:-1:exon

position:324203:-1
position: 324203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

AWJ20_2080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: QCR6
locus tag: AWJ20_2080
inference: similar to AA sequence:KEGG_Orthology:K00416
note: Subunit 6 of the ubiquinol cytochrome-c reductase complex; the complex, also known as the cytochrome bc(1) complex or Complex III, is a component of the mitochondrial inner membrane electron transport chain; highly acidic protein; required for maturation of cytochrome c1; may be loosely associated with the complex since it is easily released into the intermembrane space; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005750 - mitochondrial respiratory chain complex III [Evidence IDA] [PMID 10873857]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0070469 - respiratory chain [Evidence IEA]; GO_function: GO:0008121 - ubiquinol-cytochrome-c reductase activity [Evidence IEA]; GO_function: GO:0008121 - ubiquinol-cytochrome-c reductase activity [Evidence IMP] [PMID 8288589]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 8288589]; GO_process: GO:1902600 - hydrogen ion transmembrane transport [Evidence IEA]; GO_process: GO:0006122 - mitochondrial electron transport, ubiquinol to cytochrome c [Evidence IEA]; GO_process: GO:0006122 - mitochondrial electron transport, ubiquinol to cytochrome c [Evidence IMP] [PMID 8288589]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]
codon start: 1
product: ubiquinol--cytochrome-c reductase subunit 6
translation: MSGITSFWSDLVESIMPTVAYAEEAPKQDAPLDHDSEEVESESKSETETVAKNTGKESSEEETTEESSEESTEESTEESTEESTEEGSEEESEDGEEDDEEEEEEEEEDEPEDILPELREKAAEGPCHSFKHHFEECIERVTAEQQEEGYAEKEYKEDCVEEFFHLSHCIDEQVAPVLFTKLK
SIO_010081: AWJ20_2080
subclass of: SO_0000673
so part of: AWJ20_2080
location: complement(join(323724..324203,324747..324818))
location: region:323724-324818:-1
so has part: feature:324747-324818:-1:exon
so has part: feature:323724-324203:-1:exon

XP_018736964.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:324747-324818:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:323724-324203:-1:exon

AWJ20_2081
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2081
so part of: sequence
location: complement(<326465..>327412)
location: region:326465-327412:-1
so has part: feature:326465-327412:-1:exon
subclass of: SO_0000010

30033953
type: Gene
SIO_000068: ncbigene

position:326465:-1
position: 326465
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:327412:-1
position: 327412
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:326465-327412:-1:exon

AWJ20_2081
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2081
product: hypothetical protein
transcript id: XM_018879009.1
SIO_010081: AWJ20_2081
subclass of: SO_0000673
so part of: AWJ20_2081
location: complement(<326465..>327412)
location: region:326465-327412:-1
so has part: feature:326465-327412:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:326465-327412:-1:exon

AWJ20_2081
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2081
codon start: 1
product: hypothetical protein
translation: MSADTETPVEKVEEPTSTPSTTTPANDEPTPSSNGEAAVEYDTKRVYIGNLPFRSTHKDLRDLFEDFHISSLNIPKSKVTHSSGRVFFKKLGYAFAEFPTEEDAKKAVESVNEKVLNDRQLNVRFARVLDRKARKEKSAAAAAAAASTAETNGNDQSSTTTTSSKEGGTSKAAPKKPAPRRRRPTGPDSTDTVFLGNLPVDTTVEELEEFFKPLSPVEVKLAIKKPRKAKRKDAVITLPGRTLGFVKLADEATQKKAIDEYNGKTFKDVELQVKVATQLVEEEAEEEGAADVSSADATDADATSEAASAPVSAEN
SIO_010081: AWJ20_2081
subclass of: SO_0000673
so part of: AWJ20_2081
location: complement(326465..327412)
location: region:326465-327412:-1
so has part: feature:326465-327412:-1:exon

XP_018736965.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:326465-327412:-1:exon

AWJ20_2082
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2082
so part of: sequence
location: <331036..>332076
location: region:331036-332076:1
so has part: feature:331036-332076:1:exon
subclass of: SO_0000010

30033954
type: Gene
SIO_000068: ncbigene

position:331036:1
position: 331036
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:332076:1
position: 332076
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:331036-332076:1:exon

AWJ20_2082
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2082
product: hypothetical protein
transcript id: XM_018879010.1
SIO_010081: AWJ20_2082
subclass of: SO_0000673
so part of: AWJ20_2082
location: <331036..>332076
location: region:331036-332076:1
so has part: feature:331036-332076:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:331036-332076:1:exon

AWJ20_2082
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2082
inference: similar to AA sequence:KEGG_Orthology:K14684
codon start: 1
product: hypothetical protein
translation: MATVKEVGKSATSPSSLASSSSSPPSSLADNPSVIALRNYLALPIVSSFVAGGVAGAVSRTVVSPLERMKIIFQVQGPGSQSYQGVGPTLAKMWREEGWRGFMRGNGINCVRIVPYSAVQFSSYTIYKNFLLSRTPSSKRVDLDTLERLGAGALAGITSVVATYPLDIVRTRLSIQTASLKPLKVSGSQVHAQKPLGMWSVMSDMYKTEGGFRALYRGLIPTTMGVAPYVGLNFAVYESMREYVTPKGEKNPSALGKLFAGAVSGAVAQTITYPFDVLRRRFQVVSMGAGQLGFQYTSVWDAISSIVKQEGIRGIYKGLSANLLKVAPSMASSWLSYEYTKELLKY
SIO_010081: AWJ20_2082
subclass of: SO_0000673
so part of: AWJ20_2082
location: 331036..332076
location: region:331036-332076:1
so has part: feature:331036-332076:1:exon

XP_018736966.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:331036-332076:1:exon

AWJ20_2083
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2083
so part of: sequence
location: complement(<332385..>333455)
location: region:332385-333455:-1
so has part: feature:332385-333455:-1:exon
subclass of: SO_0000010

30033955
type: Gene
SIO_000068: ncbigene

position:332385:-1
position: 332385
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:333455:-1
position: 333455
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:332385-333455:-1:exon

AWJ20_2083
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2083
product: hypothetical protein
transcript id: XM_018879011.1
SIO_010081: AWJ20_2083
subclass of: SO_0000673
so part of: AWJ20_2083
location: complement(<332385..>333455)
location: region:332385-333455:-1
so has part: feature:332385-333455:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:332385-333455:-1:exon

AWJ20_2083
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2083
codon start: 1
product: hypothetical protein
translation: MSFIGSGSTLGFAALVKCAALNFPANRGVATSVPVAAFGLSAFFLSGVASIISPGDTYGLLCILSFLPMFLFIITLPFIKVLPLEYVSANVRTSSEKGSLCINLPVISEKEHSEPSSSPRRLYSGSHALTDSPIDIYGTRLLRTKTFWLHFFLLGTLAGVGQMYIYSCGYCVRALIEDPESNAHALQKLQSVQVGTISLTSFSGRIMSGFLSDYIHNKHHLPRTLILIASASIMLVAQASAFSVTSASSLWIPSAATGLAYGICYGSYPTIVSDTFGMRYFSQNWGFLALSPVPTSYILNMMFGALYDVNSTVDEAGHRVCALGKDCYSRSFIITSGAITTALLVLVPYVMTRKRR
SIO_010081: AWJ20_2083
subclass of: SO_0000673
so part of: AWJ20_2083
location: complement(332385..333455)
location: region:332385-333455:-1
so has part: feature:332385-333455:-1:exon

XP_018736967.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:332385-333455:-1:exon

AWJ20_2084
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: FMT1
locus tag: AWJ20_2084
so part of: sequence
location: <334892..>336025
location: region:334892-336025:1
so has part: feature:334892-336025:1:exon
subclass of: SO_0000010

30033956
type: Gene
SIO_000068: ncbigene

position:334892:1
position: 334892
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:336025:1
position: 336025
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:334892-336025:1:exon

AWJ20_2084
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: FMT1
locus tag: AWJ20_2084
product: Fmt1p
transcript id: XM_018879012.1
SIO_010081: AWJ20_2084
subclass of: SO_0000673
so part of: AWJ20_2084
location: <334892..>336025
location: region:334892-336025:1
so has part: feature:334892-336025:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:334892-336025:1:exon

AWJ20_2084
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: FMT1
locus tag: AWJ20_2084
inference: similar to AA sequence:KEGG_Orthology:K00604
note: Methionyl-tRNA formyltransferase; catalyzes the formylation of initiator Met-tRNA in mitochondria; potential Cdc28p substrate; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 5277072]; GO_function: GO:0016742 - hydroxymethyl-, formyl- and related transferase activity [Evidence IEA]; GO_function: GO:0004479 - methionyl-tRNA formyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004479 - methionyl-tRNA formyltransferase activity [Evidence IMP] [PMID 10781559]; GO_function: GO:0004479 - methionyl-tRNA formyltransferase activity [Evidence IDA] [PMID 12549912]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0071951 - conversion of methionyl-tRNA to N-formyl-methionyl-tRNA [Evidence IEA]; GO_process: GO:0071951 - conversion of methionyl-tRNA to N-formyl-methionyl-tRNA [Evidence IMP] [PMID 10781559]; GO_process: GO:0071951 - conversion of methionyl-tRNA to N-formyl-methionyl-tRNA [Evidence IDA] [PMID 12549912]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA,IEA]
codon start: 1
product: Fmt1p
translation: MLAKRPILGSLWNPCGQKHRLLYIARSYSIAKSPLRIALFGTDNFTVHSLKALHRYQLANPHVIESLHVITRTPKPSGRGLKVVKEAPSAVYAFEQDIPVLRAETDSDIVALADHGYNLAIAVSYGKLIPAQFLSQLTYGGINVHPSLLPDLSGAAPLHRALLRGYDTTGVTVQTLHPTKFDRGKILLHSPEVHIAKNETLQSLESKLGELGSECLVTVVDEYRFADPDLNVPTATKYSPSYAPKIQPKEKNINFTKHSLSQILLKHRILGKLAVFQPTADGVKRIILDNIIDASSLADVVTNEKARLDSLQIGEYDFFKHSDGNSKKAQTVCIIRVQDGFISPFLLVFQGYSPQTAAQFQKSLRKRAVTSKQLQVS
SIO_010081: AWJ20_2084
subclass of: SO_0000673
so part of: AWJ20_2084
location: 334892..336025
location: region:334892-336025:1
so has part: feature:334892-336025:1:exon

XP_018736968.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:334892-336025:1:exon

AWJ20_2085
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: VPS13
locus tag: AWJ20_2085
so part of: sequence
location: complement(<336117..>338450)
location: region:336117-338450:-1
so has part: feature:336117-338450:-1:exon
subclass of: SO_0000010

30033957
type: Gene
SIO_000068: ncbigene

position:336117:-1
position: 336117
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:338450:-1
position: 338450
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:336117-338450:-1:exon

AWJ20_2085
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: VPS13
locus tag: AWJ20_2085
product: membrane morphogenesis protein VPS13
transcript id: XM_018879013.1
SIO_010081: AWJ20_2085
subclass of: SO_0000673
so part of: AWJ20_2085
location: complement(<336117..>338450)
location: region:336117-338450:-1
so has part: feature:336117-338450:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:336117-338450:-1:exon

AWJ20_2085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: VPS13
locus tag: AWJ20_2085
inference: similar to AA sequence:KEGG_Orthology:K19525
codon start: 1
product: membrane morphogenesis protein VPS13
translation: MLPNRKAQWSAPFNITNTGRTYVKVFVHGKGTVLLKIDVLLENSTLFLYFDEAGNNWPYSIRNFSKFEFLFYQANPYVDDQGVEQHPHPPFNPIRYKLPPKSLMSYAWDFPAAPFKELVILCNGKERRVQLTEIGNLRPMKLPRTERSEGGIIELHVVADGPLQSLVLSDYDASSSIYKIKSQSQASSVSQQASSSQVDLFSVDDSVDNDSVLTVTVQLEGVGVSLINRRHVELCYMTTRGFEFKYKSSELYETFSMKVKWIQIDNQLYGGHYDVILFPSVLPKSTREMENHPTFSAMVTRVKDDSHGVLYIKYASVLLQQMTLEMDEDFLFSLLDFARDPNTPWTGSEKDILCDESSHIPEPEKESSGEEIYIEVLHIHPAQMDLSFVRTERINVEDRSSSPTALNYFVNILTMAIGNINDAPVKLNALLMENVRTQMPVLIQSVESHYSQGFLYQVHKILGSADFIGNPVGLFNNISSGFVDMFYEPYNGFMLNDRLDEFGIGLAKGGFSFMKKSIFGISDSVYKVTGSISKGLSVATLDREFQSRRRINMARNRPRHALYGLTQGATSFFDSVTSGVSGLALAPMEGAAKEGASGFFKGLGKGIVGLPTKTAIGFFDLASNLSEGVRNTTTVFDGETITRIRPARFIAQDGIVRPYSQREAVGQQWLKSANSGRYFKDEYLAHINMTQNAAVVIVTTTRIITLFTSNLRTDWEVRFDELRSINRKSTGLTLILRPDDERREFFIPIGDQDSQRFLFKEISTAVKEYNRRLQTIS
SIO_010081: AWJ20_2085
subclass of: SO_0000673
so part of: AWJ20_2085
location: complement(336117..338450)
location: region:336117-338450:-1
so has part: feature:336117-338450:-1:exon

XP_018736969.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:336117-338450:-1:exon

AWJ20_2086
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: VPS13
locus tag: AWJ20_2086
so part of: sequence
location: complement(<339147..>341327)
location: region:339147-341327:-1
so has part: feature:339147-341327:-1:exon
subclass of: SO_0000010

30033958
type: Gene
SIO_000068: ncbigene

position:339147:-1
position: 339147
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:341327:-1
position: 341327
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:339147-341327:-1:exon

AWJ20_2086
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: VPS13
locus tag: AWJ20_2086
product: membrane morphogenesis protein VPS13
transcript id: XM_018879014.1
SIO_010081: AWJ20_2086
subclass of: SO_0000673
so part of: AWJ20_2086
location: complement(<339147..>341327)
location: region:339147-341327:-1
so has part: feature:339147-341327:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:339147-341327:-1:exon

AWJ20_2086
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: VPS13
locus tag: AWJ20_2086
inference: similar to AA sequence:KEGG_Orthology:K19525
codon start: 1
product: membrane morphogenesis protein VPS13
translation: MCKVTQYDNRYDILLTIDSPQMILALDYLFALKGFIDFGMSSEGGEDEVSKVEEIEDTEEESEDTSAASNSDSGMSFSYHINVVDFSVILLADPSLENTEALVFKAEQLVLSQRATTTLAVSKVGMFLCDMSHFEEERLRVLDDFSMTASVDTTGSDATHQLSSVQVSVEPLVLRLSLRDVVLVSNIIQKASALSEGESKITEVEDSDAPTYSRFSKTEKRKIGGNSKRRPSAVATKSSANGHHRRNSSVSKKLALPRVKVVRGEEMTADFEGLRLVVIGAAHELPVLDMSVKPFSISARSWSSDLRVDLATESFVNVFNPSKSAWEPLVETWDIGLNISRSTDVTNTFVNVYSRKPIEVTLTSQTIELLSKSIDFVSANSGNDDLLLRPRDSDAPYCIRNETGYPIEVWSDSDKDTNEPQVKRIEDGQDIPWRFHDWHELRENLSTDLQKLMLGVSLKDSSYDDIRAVSVTSEGEHLHILHRNSQRTGHRLLCDIKLENYHKKITFRSALNVTNSTHINIHVSTKSDPNQMWTLKPSESRAIPISLVHECNLVVMPDRQLGFDWSNTAIYWKDLLEAPGSLSCETLPGKPHSFFHFHIEADFNKSLPITWGYPYMTVNICAPVEIVNLLPYDFDFEIVSKNTTGKRVGWKNSLRKGETSPVHVVKRSDLLLLKVHPATAGYTESEFAIINVPNHGIYKGKFSREKVMTTHSTDGVQTLNLRIHYL
SIO_010081: AWJ20_2086
subclass of: SO_0000673
so part of: AWJ20_2086
location: complement(339147..341327)
location: region:339147-341327:-1
so has part: feature:339147-341327:-1:exon

XP_018736970.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:339147-341327:-1:exon

AWJ20_2087
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: VPS13
locus tag: AWJ20_2087
so part of: sequence
location: complement(<341788..>348480)
location: region:341788-348480:-1
so has part: feature:341788-348480:-1:exon
subclass of: SO_0000010

30033959
type: Gene
SIO_000068: ncbigene

position:341788:-1
position: 341788
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:348480:-1
position: 348480
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:341788-348480:-1:exon

AWJ20_2087
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: VPS13
locus tag: AWJ20_2087
product: membrane morphogenesis protein VPS13
transcript id: XM_018879015.1
SIO_010081: AWJ20_2087
subclass of: SO_0000673
so part of: AWJ20_2087
location: complement(join(<341788..341800,341872..345791,348364..>348480))
location: region:341788-348480:-1
so has part: feature:348364-348480:-1:exon
so has part: feature:341872-345791:-1:exon
so has part: feature:341788-341800:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:348364-348480:-1:exon

position:348364:-1
position: 348364
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:341872-345791:-1:exon

position:341872:-1
position: 341872
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:345791:-1
position: 345791
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:341788-341800:-1:exon

position:341800:-1
position: 341800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

AWJ20_2087
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: VPS13
locus tag: AWJ20_2087
inference: similar to AA sequence:KEGG_Orthology:K19525
codon start: 1
product: membrane morphogenesis protein VPS13
translation: MSDGLTAGSEVALPSVLPFEPTDSSLDPLLGSSAALSKLFKLPLNVLEGHLGELVLQIPWSNLKNQPVKVVIQDVFLLAEPRLDEDYDPEEESRREQELKKERLERLELLEKSTPSQGYSQQDVQKNQSFTESLINKTIENLQITIRNIHIRYEDQTSVPGHPFSLGFTLEELSALSTDDEWNPKFIQSITHVTRKLAKLNSLAIYWNTDSDSIRRTSDDESGEKMLDNFRTMIISKEKAERNQYILKPVSGIGRITLNKFPSDSQPKSKVQLIFDELGFVFDSDQYRDALWTADLFRLYMNSKEFKRFRPTVSVKEDPKAWFKYAAEAVRSHIHEKNKPWNWDYLTMRLQIRRRYIDLYKLRTKSSPPGTLSNPDEQAEFKQLEFDLSFEDIKFYRSLAKAELRKEQAKVKEEKKRTILGGTSQSDSGSAAPAASWTSWIWGGGAKNANQASNGDDEVTMTEEQRKELYDVIEWDEKAAVEKSVTVPQNQITLEVETALESGSFTIRNDPHGASHDVAAVYFNGFKAQFLQRPTSFLTSISLQEFRVDDKSEGTLFKQIVTVKPLSHEDDHTHHNVDSHDSTPSTESESAVTSGNSGESSEDAFFWLSFEKNPLDESADSSLHVKTKSITIFYNAHFLERVARFFKPPKTHLETIGAIINAAGATVEGIRNQTRIGLEYALQEHKTANVKLDLQAPLIVIPLDVTSWKSPCVIIDAGHISLLSELAPSELLDEIKKKKSHQYKERDWERLESLMYDKFKLQFHDTQILLGNNVRDTMKQLHQENSENPAHVIDRINMDFLVEISILPEAYSLTKFKVTGHLPLFSASMSDAKYKLMMQIIDKSIPNFNFDDDEDIEDLSDPDPALPPSEIFSRPAAVEHDYGFDSDEDKEPDGETSDAQSVTSTSTADIGSSTVASSIQANATSESQNIFVFVFKIDKVELSLHRCIDDSTLEQSPLVDMVMEQFELEYCFRSLEMTADVTLGSLRIEDYIDTKCPSELRQIVSSSNSGDSTSDLFKVKYRRIKLPIIKKTGEEPSDQIVEVSMSTIRFVVEPKTFLTLLDFIITTFTNPEEAEASDSPRIEDVEPAAGQDSPQESVAPAGQGSIDVRVDLRSIILILNDEGLQLGTLKLDSALVSVRLFGETMNIHSRIGGFSLQDDTGETQIPSDSNLNQLISIEGDELADFRYETFDRSRKDLSYNSSIYFRLGSLRVNVIEKPLSRIIGFASRLLQMKGLYDRARQLAMNQANQIESPDKIRFDVIIKTPIFFFPTISADSGDKYDSVTANLGEIYLQNKFESVDGVEDVAINNVSAGVRDMKLTSRFYFEESWSQNLEIIDKIDILFDISKAD
SIO_010081: AWJ20_2087
subclass of: SO_0000673
so part of: AWJ20_2087
location: complement(join(341788..341800,341872..345791,348364..348480))
location: region:341788-348480:-1
so has part: feature:348364-348480:-1:exon
so has part: feature:341872-345791:-1:exon
so has part: feature:341788-341800:-1:exon

XP_018736971.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:348364-348480:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:341872-345791:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:341788-341800:-1:exon

AWJ20_2088
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PIM1
locus tag: AWJ20_2088
so part of: sequence
location: <347195..>350866
location: region:347195-350866:1
so has part: feature:347195-350866:1:exon
subclass of: SO_0000010

30033960
type: Gene
SIO_000068: ncbigene

position:347195:1
position: 347195
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:350866:1
position: 350866
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:347195-350866:1:exon

AWJ20_2088
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PIM1
locus tag: AWJ20_2088
product: ATP-dependent Lon protease PIM1
transcript id: XM_018879016.1
SIO_010081: AWJ20_2088
subclass of: SO_0000673
so part of: AWJ20_2088
location: <347195..>350866
location: region:347195-350866:1
so has part: feature:347195-350866:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:347195-350866:1:exon

AWJ20_2088
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PIM1
locus tag: AWJ20_2088
inference: similar to AA sequence:KEGG_Orthology:K08675
note: ATP-dependent Lon protease; involved in degradation of misfolded proteins in mitochondria; required for biogenesis and maintenance of mitochondria; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA,IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IMP] [PMID 8146662]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IMP] [PMID 8276800]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IBA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA,IEA]; GO_function: GO:0004176 - ATP-dependent peptidase activity [Evidence IEA,IEA]; GO_function: GO:0004176 - ATP-dependent peptidase activity [Evidence IMP] [PMID 8146662]; GO_function: GO:0004176 - ATP-dependent peptidase activity [Evidence IMP] [PMID 8276800]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0070361 - mitochondrial light strand promoter anti-sense binding [Evidence IBA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0008236 - serine-type peptidase activity [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IBA]; GO_function: GO:0003727 - single-stranded RNA binding [Evidence IBA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA,IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IBA,IEA]; GO_process: GO:0051131 - chaperone-mediated protein complex assembly [Evidence IEA]; GO_process: GO:0051131 - chaperone-…
codon start: 1
product: ATP-dependent Lon protease PIM1
translation: MLSSLKTTGRARRGADRLICQIQNARQCRSYHGLPRINKSIVDTRGVLLSGSHRERDSSRIFATGISQVPRFTTAQFSTSRFVLNNSTGNGDGSNGKNDDLQKVNNDQINESKEKELEKEKEQENSVESSSSGTGSEDTAASQTSGKKKSTTSETSKRSRRSLSPKVSESESATEAAAPTPLRKAVKPSPSAASILFADSNTANSQGSSDSSSGGNNSNNASENGNAKKQPISPLKQVLPVVLSHRPVFPGLAVHCNSTDETFIAAIDALEKTKSWDRTVVAFLRKPVEDEEPTVKSSSSGTMTGSVGPSASHSTTTQLMTNVEEAYSVGCVCRVETIEVTASDGKLIFNSSLFPLYRVRAGELTEPVKDAPVIRQSAAILDADTGLDVTSFDKAAEEPNNGSSEESVGSNGSTDGSATSEPAVKPSDIVNVHWMKGITAVSDEPYAVDDRAIQELCFKIIDVLYSISNTSYPLKVQVEKFSKLVRRSPGEDFQKPDFLADFCAALCSGDKEIQAILETANIKTRLEASLDLLNRELLSIKMHEKISKAIAEQTAQRQREFILQEQYKYIKKELGMDDEKGKLAQKFLERADALAMPEEVRKVFDEELAKFRGLESTAGEYSTVKSYLDWLVSLPWGKFSTDKFDLNAAKKLLDDQHFGLKEVKDRILEFIAVAKLSGSVDGKILCFAGPPGVGKTSVARSIAEALNRKFDRFSVGGLYDASEIKGHRRTYVAALPGKIIQALKKCETQNPVILIDEIDKVGTSSVHGDPSAALLEVLDPEQNKNFQDIYLDVPVDISKILFICTANTLDTLPQPLKDRMEIIHIPGYVNSEKVSIAEGYLTPSLRKKSGLENVDIKLSSDALLKLVTSYTRESGVRGLNKILEKIYRKVAYNVVIEKEKDTPPIASASESAAEAAATETASESKDAVADQPKSETVVTADAKEVAPEPIDPELLKDYHLEINVDDLTKYVGAPLYNTVRLYEKFPPGVTMGLAYTPLGGVPLFVETVLQQPLDPKSTPKLTRTGHLGEVMNESSSIAYSFSRMYMVKRFLGNRFLDHAVLHTHFPEGAVKKDGPSAGIAMATSLISLALNKPVNPDVCMTGEITLTGKVLQIGGLREKSAAAKAAGSKIIVFPKDNMAEWEDLPEMIREGLTPMPVSWYDEVFDIAFGQVDQAEIESMWSKELATKDVDNSTLGRNDDAGFTPPPPPPPSNRSPSLRASSPY
SIO_010081: AWJ20_2088
subclass of: SO_0000673
so part of: AWJ20_2088
location: 347195..350866
location: region:347195-350866:1
so has part: feature:347195-350866:1:exon

XP_018736972.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:347195-350866:1:exon

AWJ20_2089
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2089
so part of: sequence
location: complement(<350365..>350730)
location: region:350365-350730:-1
so has part: feature:350365-350730:-1:exon
subclass of: SO_0000010

30033961
type: Gene
SIO_000068: ncbigene

position:350365:-1
position: 350365
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:350730:-1
position: 350730
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:350365-350730:-1:exon

AWJ20_2089
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2089
product: hypothetical protein
transcript id: XM_018879017.1
SIO_010081: AWJ20_2089
subclass of: SO_0000673
so part of: AWJ20_2089
location: complement(<350365..>350730)
location: region:350365-350730:-1
so has part: feature:350365-350730:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:350365-350730:-1:exon

AWJ20_2089
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2089
codon start: 1
product: hypothetical protein
translation: MDSISAWSTWPKAMSNTSSYHETGMGVSPSRIISGRSSHSAMLSLGKTMILDPAALAAADFSLKPPIWRTLPVRVISPVMQTSGLTGLFKANEIRLVAIAIPADGPSFLTAPSGKCVWSTA
SIO_010081: AWJ20_2089
subclass of: SO_0000673
so part of: AWJ20_2089
location: complement(350365..350730)
location: region:350365-350730:-1
so has part: feature:350365-350730:-1:exon

XP_018736973.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:350365-350730:-1:exon

AWJ20_2090
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: YIP5
locus tag: AWJ20_2090
so part of: sequence
location: <351424..>352278
location: region:351424-352278:1
so has part: feature:351424-352278:1:exon
subclass of: SO_0000010

30033963
type: Gene
SIO_000068: ncbigene

position:351424:1
position: 351424
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:352278:1
position: 352278
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:351424-352278:1:exon

AWJ20_2090
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: YIP5
locus tag: AWJ20_2090
product: Yip5p
transcript id: XM_018879018.1
SIO_010081: AWJ20_2090
subclass of: SO_0000673
so part of: AWJ20_2090
location: <351424..>352278
location: region:351424-352278:1
so has part: feature:351424-352278:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:351424-352278:1:exon

AWJ20_2090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: YIP5
locus tag: AWJ20_2090
note: Protein that interacts with Rab GTPases; localized to late Golgi vesicles; computational analysis of large-scale protein-protein interaction data suggests a possible role in vesicle-mediated transport; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 17178117]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0017137 - Rab GTPase binding [Evidence IPI] [PMID 11943201]; GO_process: GO:0008150 - biological_process [Evidence ND]
codon start: 1
product: Yip5p
translation: MGSQAYAPPDFESSGSGAYNVSGSMASAGPGNPLLGSGNKTGSIFSFDFYQWYFNVDTPVVLYRCLLALNPFNNTPFIDSEADLNVGSPAGLIAGGDGNPDLYGPFWLCTTVIFVLFFASTLTGLLFTAWQGGKYDYKFDLLTGAAGLMYGYTFVIPTGLWLIVRYLNISPSTTLLQLISLYGYSNVTWIPVAILSISPLLGTPTLSNVIRWIMIALGFTLSGSFIGKNVYRALIPSQQSDSFVIDRKPALSVLIGVIALHMGLSFAVKILFFGTVTAPPPPTN
SIO_010081: AWJ20_2090
subclass of: SO_0000673
so part of: AWJ20_2090
location: 351424..352278
location: region:351424-352278:1
so has part: feature:351424-352278:1:exon

XP_018736974.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:351424-352278:1:exon

AWJ20_2091
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: YVC1
locus tag: AWJ20_2091
so part of: sequence
location: complement(<352506..>354461)
location: region:352506-354461:-1
so has part: feature:352506-354461:-1:exon
subclass of: SO_0000010

30033964
type: Gene
SIO_000068: ncbigene

position:352506:-1
position: 352506
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:354461:-1
position: 354461
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:352506-354461:-1:exon

AWJ20_2091
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: YVC1
locus tag: AWJ20_2091
product: Yvc1p
transcript id: XM_018879019.1
SIO_010081: AWJ20_2091
subclass of: SO_0000673
so part of: AWJ20_2091
location: complement(<352506..>354461)
location: region:352506-354461:-1
so has part: feature:352506-354461:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:352506-354461:-1:exon

AWJ20_2091
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: YVC1
locus tag: AWJ20_2091
note: Vacuolar cation channel; mediates release of Ca(2+) from the vacuole in response to hyperosmotic shock; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 11427713]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 11781332]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 20035756]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005227 - calcium activated cation channel activity [Evidence IDA] [PMID 1700419]; GO_function: GO:0005262 - calcium channel activity [Evidence IEA]; GO_function: GO:0005262 - calcium channel activity [Evidence IDA] [PMID 11781332]; GO_function: GO:0005216 - ion channel activity [Evidence IEA]; GO_function: GO:0005267 - potassium channel activity [Evidence IDA] [PMID 1700419]; GO_function: GO:0005272 - sodium channel activity [Evidence IDA] [PMID 1700419]; GO_function: GO:0005244 - voltage-gated ion channel activity [Evidence IDA] [PMID 1700419]; GO_process: GO:0070588 - calcium ion transmembrane transport [Evidence IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IEA]; GO_process: GO:0030003 - cellular cation homeostasis [Evidence IDA,IMP] [PMID 11427713]; GO_process: GO:0030003 - cellular cation homeostasis [Evidence IDA,IMP] [PMID 11781332]; GO_process: GO:0006811 - ion transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Yvc1p
translation: MSTDLASVPAPLVPAQDDLPLVQVSPKQVLKIALRVKKLIDTVVPIQLTEEEVIKPSSIVLTEKIFQLILEAAGGKGDGAPGTSSRRYRATLVFVLLVIKKWNRRAALSLLYDSDLYNTRAFVAECYAKRILDTEQDEYYMFRDMLCQRYSITVHGSDSAPANALELAADLHSTVVIGSSGYQRCMKWLWRGWMVQSDQTPTEYDFYAKVNDPRFWSHFDPDRIKTPKYQNYIQLLVSLIYLAFYSYAVNNANPSASLIASELWLYLFTFGFILDEINKLLNVGYAYIGFWNTFNDTLYILVVVAFGFRCAALTYSKSSDQRLSYDLAAYHILSCAAPLIWGRLLLFLDSVRFFGAMLIVLKELMKESIIFFVLLVVVAGGFLQAFIGLDIADGTRDVTMLVVQVMTRTVLDGIDFEWMDGFAPPYGEVLYYIFTFLVSTLLLNILVALFNSAYQNIYDNATDEYLASMAQKTLRFIRAPDENVFIPPLNLLELAFLILPFEWWMDASMYQRINRIFMSIIYSPFLLLIAVDEAKAARRVLYNRSKGVHDDANEEDEEWDLFDGFTIDAHGIHSYGAEAVQMEMAIEAGDPEFKIDEDAFQKKVEKQVPNFDPQRQTGISAAKAEELIAKIDALSALVEKLTLEKGQSSSS
SIO_010081: AWJ20_2091
subclass of: SO_0000673
so part of: AWJ20_2091
location: complement(352506..354461)
location: region:352506-354461:-1
so has part: feature:352506-354461:-1:exon

XP_018736975.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:352506-354461:-1:exon

AWJ20_2092
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CIR2
locus tag: AWJ20_2092
so part of: sequence
location: <356207..>358228
location: region:356207-358228:1
so has part: feature:356207-358228:1:exon
subclass of: SO_0000010

30033965
type: Gene
SIO_000068: ncbigene

position:356207:1
position: 356207
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:358228:1
position: 358228
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:356207-358228:1:exon

AWJ20_2092
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CIR2
locus tag: AWJ20_2092
product: Cir2p
transcript id: XM_018879020.1
SIO_010081: AWJ20_2092
subclass of: SO_0000673
so part of: AWJ20_2092
location: <356207..>358228
location: region:356207-358228:1
so has part: feature:356207-358228:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:356207-358228:1:exon

AWJ20_2092
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CIR2
locus tag: AWJ20_2092
inference: similar to AA sequence:KEGG_Orthology:K00311
note: Putative ortholog of human ETF-dH; found in a large supramolecular complex with other mitochondrial dehydrogenases; may have a role in oxidative stress response; ETF-dH is also known as electron transfer flavoprotein dehydrogenase; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA,IPI] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0004174 - electron-transferring-flavoprotein dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]
codon start: 1
product: Cir2p
translation: MLGYKSTGATLQKSASAGAARVLARNSTKSTTKQFSRCFTALKSNTITGTQTGTIQNTTNGKLKRNLTRSTLINSRLRTSITHNGRRSYSTSPEEGEAAAEEEFPELSEPREADEVDVCIVGGGPAGLAAAIRFKQLDLEKGSGELRVIVLEKASDMGAHTVSGAVLEPRALDELLPEWRDDPSLPESVTPVTSEAMRFLTKSMTIPLPEPPQMKNHGNYIVSLNQMVKWLSEKAEEIGVEVYPGFSVSELVYDEQGRVKGIATNDQGVSRDFKPKASFQRGMEFHAKITLLAEGCHGSLSKQVIKKYDLRKDSDPQTYGLGIKEVWEVPKEKFNKGFVGHSMGWPLSSDVYGGGFIYHFGDGLVTVGAVIGLDYKNPWISPYQEFQRMKHHPFYANTLKGGKCISYAARALNEGGLQSIPKLSFPGGGLIGCTAGFVNVPKIKGTHTAMKTGMLAAESAFDSISAFNSAIEEGQSESEVTAPSVESYEESFKDSWVYKELHEIRNVRPSFNNPLKMWGGVMYSGLDTLILKGRTPWTFHHKHTDSGATEPASKYNKIEYPKPDGELSFDILTSVSRTGTNHDEDEPCHLRIPDQDNRKHTEIAYPKYQGIENRFCPAGVYEYIEDASEPLGVRFQINSQNCIHCKTCDIKVPTQDINWTVPEGGDGPKYYMT
SIO_010081: AWJ20_2092
subclass of: SO_0000673
so part of: AWJ20_2092
location: 356207..358228
location: region:356207-358228:1
so has part: feature:356207-358228:1:exon

XP_018736976.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:356207-358228:1:exon

AWJ20_2093
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: NMA1
locus tag: AWJ20_2093
so part of: sequence
location: <360167..>361426
location: region:360167-361426:1
so has part: feature:360167-361426:1:exon
subclass of: SO_0000010

30033966
type: Gene
SIO_000068: ncbigene

position:360167:1
position: 360167
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:361426:1
position: 361426
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:360167-361426:1:exon

AWJ20_2093
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: NMA1
locus tag: AWJ20_2093
product: nicotinamide-nucleotide adenylyltransferase NMA1
transcript id: XM_018879021.1
SIO_010081: AWJ20_2093
subclass of: SO_0000673
so part of: AWJ20_2093
location: <360167..>361426
location: region:360167-361426:1
so has part: feature:360167-361426:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:360167-361426:1:exon

AWJ20_2093
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: NMA1
locus tag: AWJ20_2093
inference: similar to AA sequence:KEGG_Orthology:K06210
note: Nicotinic acid mononucleotide adenylyltransferase; catalyzes the transfer of the adenylyl moiety of ATP to nicotinamide mononucleotide to form NAD; involved in pathways of NAD biosynthesis, including the de novo, NAD(+) salvage, and nicotinamide riboside salvage pathways; homolog of human NMNAT; NMA1 has a paralog, NMA2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0000309 - nicotinamide-nucleotide adenylyltransferase activity [Evidence IEA]; GO_function: GO:0000309 - nicotinamide-nucleotide adenylyltransferase activity [Evidence IDA] [PMID 10428462]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009435 - NAD biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009435 - NAD biosynthetic process [Evidence IDA] [PMID 10428462]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0019363 - pyridine nucleotide biosynthetic process [Evidence IEA]
codon start: 1
product: nicotinamide-nucleotide adenylyltransferase NMA1
translation: MDPSLAPDFIPPSEQRNRVPTTAGNRVPTVSPIQAYELEEAFDSQLDINSSHFGTAFPAARRRSSTIEIDMADISQNIPRISSAMSASPTDSDLESNNGREKFTNTDGGDNASNLKSFDSNQRLASPLAASNYNEPTARQIIQSADLEEVPLGVTRQAKKLVDYQFPVHRLADTMLDDSKVPLVLVACGSFSPITYLHLRMFEMAMDSIREHTRLEVIGGYYSPVSDNYQKPGLAKSHHRVRMCELACERTSSWLMVDAWESLQPTYTRTALVLDHFNEEINVRRQGVGTADGQRKPVKIMLLAGGDLIESMGEPNVWAEDDLHHILGRYGCIIVERTGSDVRSFLLSHDIMYEHRRNVLVIKQLIYNDISSTKVRLFLRRGMSVQYLLPNSVIRYILEHGLYINESEPVKQVLSEKGD
SIO_010081: AWJ20_2093
subclass of: SO_0000673
so part of: AWJ20_2093
location: 360167..361426
location: region:360167-361426:1
so has part: feature:360167-361426:1:exon

XP_018736977.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:360167-361426:1:exon

AWJ20_2094
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2094
so part of: sequence
location: <367021..>368586
location: region:367021-368586:1
so has part: feature:367021-368586:1:exon
subclass of: SO_0000010

30033967
type: Gene
SIO_000068: ncbigene

position:367021:1
position: 367021
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:368586:1
position: 368586
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:367021-368586:1:exon

AWJ20_2094
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2094
product: hypothetical protein
transcript id: XM_018879022.1
SIO_010081: AWJ20_2094
subclass of: SO_0000673
so part of: AWJ20_2094
location: <367021..>368586
location: region:367021-368586:1
so has part: feature:367021-368586:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:367021-368586:1:exon

AWJ20_2094
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2094
inference: similar to AA sequence:KEGG_Orthology:K08150
codon start: 1
product: hypothetical protein
translation: MSSVESTSLLRGEEEDVSGSVPVSAVSSVPEILSDVDKEVDGVNLYMLLCIVCACVGGLMFGYDTGCISQVIELLSDDLGHYLVAWELELITSSTSLFALMGSIFAGISADRYGRKVLIAVSCVVFILAALVMALSMSLAWLVLGRSLVGLAVGVASTIVSVYIAEISPPRYRGRLVALNSVSTTGGQVLAYLSGVAFHKTTNGWRYIVGLSGIPPLLFLLVMTAVPESPRFLFMNGRVDEAKQVLLKLDPRVDVAQVEEMVRQDLSYKDANNGVDDSSLARLFSVPANFRALVVGCGLMAAQQLCCFNGFMYFSVSLFAMAGFDNPFAVSLVVSITNFVFTWGAVKYIDKVGRRAILLRSVWIMVVALIVVAFAFTTIDPSAIKNATNNDSGKPGSDSEPDGMKILTVAATIVFVASYAIGLGNIPWQAIEFLPLDVRSLGSMFITSTNWTFNTLVSASFLHLLKWLTGTGTFLLYAFFTLLAYIGIYLYYPEVAGLPLEKVNDIFKQGWRGLGKRGVVL
SIO_010081: AWJ20_2094
subclass of: SO_0000673
so part of: AWJ20_2094
location: 367021..368586
location: region:367021-368586:1
so has part: feature:367021-368586:1:exon

XP_018736978.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:367021-368586:1:exon

AWJ20_2095
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PAN2
locus tag: AWJ20_2095
so part of: sequence
location: complement(<368795..>371680)
location: region:368795-371680:-1
so has part: feature:368795-371680:-1:exon
subclass of: SO_0000010

30033968
type: Gene
SIO_000068: ncbigene

position:368795:-1
position: 368795
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:371680:-1
position: 371680
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:368795-371680:-1:exon

AWJ20_2095
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PAN2
locus tag: AWJ20_2095
product: Pan2p
transcript id: XM_018879023.1
SIO_010081: AWJ20_2095
subclass of: SO_0000673
so part of: AWJ20_2095
location: complement(<368795..>371680)
location: region:368795-371680:-1
so has part: feature:368795-371680:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:368795-371680:-1:exon

AWJ20_2095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PAN2
locus tag: AWJ20_2095
inference: similar to AA sequence:KEGG_Orthology:K12571
note: Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex; complex acts to control poly(A) tail length and regulate the stoichiometry and activity of postreplication repair complexes; GO_component: GO:0031251 - PAN complex [Evidence IDA] [PMID 8816488]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004527 - exonuclease activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0004535 - poly(A)-specific ribonuclease activity [Evidence IEA]; GO_function: GO:0004535 - poly(A)-specific ribonuclease activity [Evidence IMP] [PMID 8550599]; GO_process: GO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic [Evidence IEA]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IMP,IPI] [PMID 8550599]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IMP,IPI] [PMID 8550599]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA,IEA]; GO_process: GO:0006301 - postreplication repair [Evidence IGI,IPI] [PMID 11953437]
codon start: 1
product: Pan2p
translation: MLSNVTKMKRDSQAIALGLASGSVDVVDPNSLQVVKTFNSHSGPISDLDCRQHIIMTCGTSLRKQGYVPDPLVNCYDLRAMKPLPPIPFPAGAAYIKIHPKMSTCCIIASQSGQLQFADSANPTSVFIHQAAITSPLTSLELSPSGDYLSLTDEEGYIHLWSNTVNPSASFSEFSAPLDFPTSQDPPLHFGVDDDVSLATVGMPYYKEELLSSWSNEDMVFKLGMPSPKIDRSILAGMKVVDYVGYGSYKKTREPRNMAQKYISLDSNRRSSITVPRFISEKERTGEIDDESAIFDDDVRDDDKRPNGKTNTQAPSSRKITKMYRRLEIKYSKFGVNDFDFDFYNKTQYAGLENQAANTYCNSILQLYRYSKYMYNFALKKLAVATTVERVSLLSELGFVFDMLHLAGGKHCCTANFVNALSSIPEAVALGLVFDDMVPNLDQPGLVLQKFKTFLMEQIVKNEKYQTLSVENQLQNVHSNPAALATLPSEFESSVAGIPVSTSIRCLSCGTDSIKKSTIYELDLQTEYGFRNNSSAGPGPNTANFDSLFFKALNSSLDKTNKVRGWCDVCRKYQQLVTTRSATKLPQVLNVNINIFPEADTSVSRQIWASPHWPPTEFFTDNHSRRLVANHRVGKDKYELLGCVVEISRPGHSDHHLVSVVKIDEAWYLFNDFLVKQIPEKDALDFSLAWKTPVLLVYQLANEMPKEFDYGSWKQTLDTSILYKDFFTAGNREEVRREYELLTLEEAPKPGTLVAIDAEFVMLQNEETEIRSDGTKSIVKPRSLSLARVSVVRGEGPKEGVAFIDDYIATTDTIVDYLTEFSGIEPGDLDPALSKRGLVSLHTAYKRLWLLLQLGVTFVGHGLSNDFRTINIQVPANQVIDTLDIYFVRARQRKLSLKFLAWYLLDENVQTGNHDSIEDARTALHLYKKHQQLLRDGTFDATLAKVYSEGHKYNFRPPANS
SIO_010081: AWJ20_2095
subclass of: SO_0000673
so part of: AWJ20_2095
location: complement(368795..371680)
location: region:368795-371680:-1
so has part: feature:368795-371680:-1:exon

XP_018736979.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:368795-371680:-1:exon

AWJ20_2096
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2096
so part of: sequence
location: complement(<374204..>374277)
location: region:374204-374277:-1
so has part: feature:374204-374277:-1:exon
subclass of: SO_0000663

30033969
type: Gene
SIO_000068: ncbigene

position:374204:-1
position: 374204
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:374277:-1
position: 374277
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:374204-374277:-1:exon

AWJ20_2096
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_2096
product: tRNA-Ile
SIO_010081: AWJ20_2096
subclass of: SO_0000673
so part of: AWJ20_2096
location: complement(<374204..>374277)
location: region:374204-374277:-1
so has part: feature:374204-374277:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:374204-374277:-1:exon

AWJ20_2097
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: GSH1
locus tag: AWJ20_2097
so part of: sequence
location: complement(<377609..>379693)
location: region:377609-379693:-1
so has part: feature:377609-379693:-1:exon
subclass of: SO_0000010

30033970
type: Gene
SIO_000068: ncbigene

position:377609:-1
position: 377609
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:379693:-1
position: 379693
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:377609-379693:-1:exon

AWJ20_2097
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: GSH1
locus tag: AWJ20_2097
product: glutamate--cysteine ligase
transcript id: XM_018879024.1
SIO_010081: AWJ20_2097
subclass of: SO_0000673
so part of: AWJ20_2097
location: complement(<377609..>379693)
location: region:377609-379693:-1
so has part: feature:377609-379693:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:377609-379693:-1:exon

AWJ20_2097
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: GSH1
locus tag: AWJ20_2097
inference: similar to AA sequence:KEGG_Orthology:K11204
note: Gamma glutamylcysteine synthetase; catalyzes the first step in glutathione (GSH) biosynthesis; expression induced by oxidants, cadmium, and mercury; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IBA]; GO_component: GO:0005622 - intracellular [Evidence IDA] [PMID 2184310]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004357 - glutamate-cysteine ligase activity [Evidence IEA,IEA]; GO_function: GO:0004357 - glutamate-cysteine ligase activity [Evidence IDA] [PMID 1687097]; GO_function: GO:0004357 - glutamate-cysteine ligase activity [Evidence IMP] [PMID 2184310]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006750 - glutathione biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006750 - glutathione biosynthetic process [Evidence IDA] [PMID 1687097]; GO_process: GO:0006750 - glutathione biosynthetic process [Evidence IMP] [PMID 8768524]; GO_process: GO:0046686 - response to cadmium ion [Evidence IDA] [PMID 10921921]; GO_process: GO:0042542 - response to hydrogen peroxide [Evidence IMP] [PMID 7615092]
codon start: 1
product: glutamate--cysteine ligase
translation: MGLLSLGTPLEWNEVSQYTDHVREHGIEQLIHIHNANKDKKNDSLLWGDEVEYMVVELDPESKEAKLSLRQAQILDDLAQAEKKGDLTAHNVVFHPEYGRYMLEATPAKPFTGDFKDLLLVEANMATRRTIAKEHMNSNEFPLTLTSYPRLGVGQFTSPAAEPNGKASRSFFLPDEIINPHVRFPTLTANIRTRRGSKVAINVPIYKDEKTPSPFVDDSIPWDRDLYPEDANAREGAALPDHIYMDSMGFGMGCSCLQITFQATDIDEGRDLYDQLAPLAPILLALTAAAPAYRGYLSDQDARWNVIAGSVDDRTPVERGLVPADDINEESEDSEVAQKAENNENSEKNEKTNGKAQFCSSQSNRTKTTSTTKYPSVKANSDRVIPKSRYDSIDSYISGHLKGSASHFNDTKLVINKKVKKRLTEAGFDEQLSNHFAHLFIRDPIVIFKELLDIDDTKESDHFENIQSTNWQTMRFKPPPPSEGPNQNVGWRVEFRPMEVQITDFENAAFSVFIVLVTRVILSYKLNFYIPISKVDENMKVAHYRDAVNKNKFWFRTDIESPTSQPDTETEPSPGIYELLSINEIINGKADKSFIGLVPLIRRYLNYINIDLDTLCQLDRYLSLISRRASGELWTAATWMRHFITSHPKYNKDSKISSDINYDLMQKVYDITQGKGWDDGLTKHFLGGFSSSVP
SIO_010081: AWJ20_2097
subclass of: SO_0000673
so part of: AWJ20_2097
location: complement(377609..379693)
location: region:377609-379693:-1
so has part: feature:377609-379693:-1:exon

XP_018736980.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:377609-379693:-1:exon

AWJ20_2098
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CUP9
locus tag: AWJ20_2098
so part of: sequence
location: <390180..>391613
location: region:390180-391613:1
so has part: feature:390180-391613:1:exon
subclass of: SO_0000010

30033971
type: Gene
SIO_000068: ncbigene

position:390180:1
position: 390180
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:391613:1
position: 391613
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:390180-391613:1:exon

AWJ20_2098
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CUP9
locus tag: AWJ20_2098
product: Cup9p
transcript id: XM_018879025.1
SIO_010081: AWJ20_2098
subclass of: SO_0000673
so part of: AWJ20_2098
location: <390180..>391613
location: region:390180-391613:1
so has part: feature:390180-391613:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:390180-391613:1:exon

AWJ20_2098
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CUP9
locus tag: AWJ20_2098
note: Homeodomain-containing transcriptional repressor; regulates expression of PTR2, which encodes a major peptide transporter; imported peptides activate ubiquitin-dependent proteolysis, resulting in degradation of Cup9p and de-repression of PTR2 transcription; CUP9 has a paralog, TOS8, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 9427760]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 9427760]; GO_function: GO:0001103 - RNA polymerase II repressing transcription factor binding [Evidence IPI] [PMID 18708352]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0001133 - sequence-specific transcription regulatory region DNA binding RNA polymerase II transcription factor recruiting transcription factor activity [Evidence IC] [PMID 18708352]; GO_function: GO:0001133 - sequence-specific transcription regulatory region DNA binding RNA polymerase II transcription factor recruiting transcription factor activity [Evidence IC] [PMID 9427760]; GO_process: GO:0035955 - negative regulation of dipeptide transport by negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 10850718]; GO_process: GO:0035955 - negative regulation of dipeptide transport by negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 17005992]; GO_process: GO:0035955 - negative regulation of dipeptide transport by negative reg…
codon start: 1
product: Cup9p
translation: MNTSDQTNRSSLPRSSNSDSPLSVSNMSMSIAASSVQPQWQMSANDTPVLPHERSNIRLPSINELMASFSNEPQQSVPRANSSSYYSPAVNVKPEPHSPPFYTQSSQQQQQHPPAHSHIPLQSHLSQPEPRSEHASLPHPSHPYQPSQQPQQQQPPQLQQPHPHQQQQHGQQLPHGQQQLQPLQQSHTQYQQGPVSPSLASSSSSNMDSAPAYSTTSSGQPGSDGHSNTSIQMLLDASSSADSSQKKRSHSVSSASSVSSNSNRMPPTSGGAMNNNSTPGNTSNGSASSSSPPFSISPPPFSASPYSPPLKRRGNLPRAVTDILRNWLSSHLHYPYPTEQEKIELMKQTGLSLNQVSNWFINARRRRVPAIYKHSGLMNMTERPRRTVSEFNMRHSPQQQPMMNHQRSVSQIHHPQQPPQPQPQQQPPPPPMSQPTPPPPPPSMTNPLQQQAPTPAAPPPNHMHYSSQPHIPPQWKP
SIO_010081: AWJ20_2098
subclass of: SO_0000673
so part of: AWJ20_2098
location: 390180..391613
location: region:390180-391613:1
so has part: feature:390180-391613:1:exon

XP_018736981.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:390180-391613:1:exon

AWJ20_2099
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CTI6
locus tag: AWJ20_2099
so part of: sequence
location: complement(<392070..>394457)
location: region:392070-394457:-1
so has part: feature:392070-394457:-1:exon
subclass of: SO_0000010

30033972
type: Gene
SIO_000068: ncbigene

position:392070:-1
position: 392070
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:394457:-1
position: 394457
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:392070-394457:-1:exon

AWJ20_2099
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CTI6
locus tag: AWJ20_2099
product: Cti6p
transcript id: XM_018879026.1
SIO_010081: AWJ20_2099
subclass of: SO_0000673
so part of: AWJ20_2099
location: complement(<392070..>394457)
location: region:392070-394457:-1
so has part: feature:392070-394457:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:392070-394457:-1:exon

AWJ20_2099
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CTI6
locus tag: AWJ20_2099
note: Component of the Rpd3L histone deacetylase complex; relieves transcriptional repression by binding to the Cyc8p-Tup1p corepressor and recruiting the SAGA complex to the repressed promoter; contains a PHD finger domain; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 16286007]; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 16286008]; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 16314178]; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0070210 - Rpd3L-Expanded complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 12086626]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0035064 - methylated histone binding [Evidence IDA] [PMID 17142463]; GO_function: GO:0008134 - transcription factor binding [Evidence IDA] [PMID 12086626]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0061188 - negative regulation of chromatin silencing at rDNA [Evidence IMP] [PMID 16286008]; GO_process: GO:0061186 - negative regulation of chromatin silencing at silent mating-type cassette [Evidence IMP] [PMID 16286008]; GO_process: GO:0031939 - negative regulation of chromatin silencing at telomere [Evidence IMP] [PMID 16286008]; GO_process: GO:0045893 - positive regulation of transcription, DNA-templated [Evidence IMP] [PMID 12086626]; GO_process: GO:0030174 - regulation of DNA-dependent DNA replication initiation [Evidence IMP] [PMID 19417103]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]
codon start: 1
product: Cti6p
translation: MVGKRAGRSRSAQAGEVSDSTSSTPNGDSGNSSRRSRRHASSLLEGDDEMTEENDTSRPHDEDSADNSSSINNNSSSKEKGISSTPTRRRTRKGTEGVADSVLVAEEATLSSTPVKSQVKNEDGDDTIGEDEMKLEYDNDNEKEDEIVHDADVTIEEEGNTTKELMSDEEAEPEADLDPEPEAELKNEPTGKEEQEEEEDDVEEEHIGRRGKREKRERKTKVEPEDDTGAAGDDESHEDTKDSIDPAPRRRGRGRGKRRRKSPNEEDVELDADGDTEMVPAEPELEPDLEDADEAQADGASDDIPEEGEEDAEGEDSSVTRCICGHQELQTHRISKTKHSSIDSGLFIQCDQCQVWQHGFCVGFSSETEVPDVYYCEWCRPDFHLVVVRPWGKTSSYLPHADPNANAAKEDDGSSVSNGNDDEHSSGSRSSRAQRHRKDLNERDGYFDKKEKDEDTSISSIDKTASNGNVAKSVSSPSTRSRRSAAAQGSPTVIRTAHEEAAHRRKTLNSSRDMSYEETLKRVLEESTYDIQPPNASAANDSDSNTTTTTTSTTRRRRNNNSSQALLAAEAAERDRDISSEDQSGSMTSSKRRTRDNTMKPPSRKRAAGGAVNGAGSGAAETGEGSRASSPVSESRTTGSTGKSKRQRTKGSRNQASSEGNSAGASGASTPKKSATRPVERSKPRIPPPRSTMSDMRKRVGAILEFIARTQIDHANEQNERHQLLRDRNSLHQQLTGEPPQTDASSTSDQQPDPTSKFAGLFQLHQSNLDQMDQLTRKLLHWEQLFGRYGERSTH
SIO_010081: AWJ20_2099
subclass of: SO_0000673
so part of: AWJ20_2099
location: complement(392070..394457)
location: region:392070-394457:-1
so has part: feature:392070-394457:-1:exon

XP_018736982.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:392070-394457:-1:exon

AWJ20_2100
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2100
so part of: sequence
location: complement(<394926..>395036)
location: region:394926-395036:-1
so has part: feature:394926-395036:-1:exon
subclass of: SO_0000663

30033975
type: Gene
SIO_000068: ncbigene

position:394926:-1
position: 394926
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:395036:-1
position: 395036
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:394926-395036:-1:exon

AWJ20_2100
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_2100
product: tRNA-Leu
SIO_010081: AWJ20_2100
subclass of: SO_0000673
so part of: AWJ20_2100
location: complement(<394926..>395036)
location: region:394926-395036:-1
so has part: feature:394926-395036:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:394926-395036:-1:exon

AWJ20_2101
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TCO89
locus tag: AWJ20_2101
so part of: sequence
location: complement(<395314..>397683)
location: region:395314-397683:-1
so has part: feature:395314-397683:-1:exon
subclass of: SO_0000010

30033976
type: Gene
SIO_000068: ncbigene

position:395314:-1
position: 395314
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:397683:-1
position: 397683
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:395314-397683:-1:exon

AWJ20_2101
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TCO89
locus tag: AWJ20_2101
product: Tco89p
transcript id: XM_018879028.1
SIO_010081: AWJ20_2101
subclass of: SO_0000673
so part of: AWJ20_2101
location: complement(<395314..>397683)
location: region:395314-397683:-1
so has part: feature:395314-397683:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:395314-397683:-1:exon

AWJ20_2101
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TCO89
locus tag: AWJ20_2101
note: Subunit of TORC1 (Tor1p or Tor2p-Kog1p-Lst8p-Tco89p); regulates global H3K56ac; TORC1 complex regulates growth in response to nutrient availability; cooperates with Ssd1p in the maintenance of cellular integrity; deletion strains are hypersensitive to rapamycin; GO_component: GO:0031931 - TORC1 complex [Evidence IPI] [PMID 14736892]; GO_component: GO:0031234 - extrinsic component of cytoplasmic side of plasma membrane [Evidence IDA] [PMID 14736892]; GO_component: GO:0000306 - extrinsic component of vacuolar membrane [Evidence IDA] [PMID 14736892]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14562095]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 17560372]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0031929 - TOR signaling [Evidence IC] [PMID 14736892]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 14736892]; GO_process: GO:0006071 - glycerol metabolic process [Evidence IGI] [PMID 10931309]; GO_process: GO:0001558 - regulation of cell growth [Evidence IPI] [PMID 14736892]; GO_process: GO:0009651 - response to salt stress [Evidence IMP] [PMID 17298473]
codon start: 1
product: Tco89p
translation: MPHTTGPNRVLRQTSGNDSGGSDDSSGSSSNTRKPERPHLTSHNSSTGGQKLFVARSGHGHAKHFRSSASATRLNKMTRMAPLHGLNDSSVTGRSPNQTSGVAQGTSGATGAAGAGAGAGSGGGPSSGGSGSRGNAKFLRSKSTDNIYNHNPAEVIHRRNTSQAMLRSSRSQTRIGRHHPHMHALMPTRSRDSSVSVDQTGGSAATGAGSGSGSGGAVKRKSTAGMVRAARPVIQLDHDDSDDENDMEESGDESHDKSDARNLDSASKNANANANQVPLPVEEQAAQQTRGAVQIQELPPSDSPVSTGSNTNTTNGGADANTNANSNSSRASPLSPAAGSEAVREPLPTADSTVSKGATTPAISAVTSTSSRQSSPRPGASASVTATATAAFQSATGRDMTSNNLQPPSLGGQPKSDEEYEDTDADDDDEPPATSQPKHISPTDSFKPLLHSTNTPTPPQISTETVVAISGSEASTSGSSTTATPYLSRTTSNHLNSDSTGSDPEVVRSRFLDTSYRSGESTPYPVASWVDLQRISSTTNNTSSSSAVVDPVNGKITNGPADSGIASGSGAGNSTGANRVASETALDNPSLVTTRTQQKLWLQRQSIDHPPTPTSTMSLTSEQRRDFERITKEFINVRRYQSPIAEAVDRIRNRRQPQVSSVALQNRKKRPDTNNSSDPYSNLSQSLPKRVTSLSATTLNESNGFPTDNTNASNTWKSVTTTTAASAANVGSVAYKLTKIWNEGWQDPDEPEPPAPQESPSIHSQAQQVQQQIAAAQRQIRSNAAIKLV
SIO_010081: AWJ20_2101
subclass of: SO_0000673
so part of: AWJ20_2101
location: complement(395314..397683)
location: region:395314-397683:-1
so has part: feature:395314-397683:-1:exon

XP_018736983.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:395314-397683:-1:exon

AWJ20_2102
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: VPS45
locus tag: AWJ20_2102
so part of: sequence
location: <399353..>400633
location: region:399353-400633:1
so has part: feature:399353-400633:1:exon
subclass of: SO_0000010

30033977
type: Gene
SIO_000068: ncbigene

position:399353:1
position: 399353
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:400633:1
position: 400633
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:399353-400633:1:exon

AWJ20_2102
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: VPS45
locus tag: AWJ20_2102
product: Vps45p
transcript id: XM_018879029.1
SIO_010081: AWJ20_2102
subclass of: SO_0000673
so part of: AWJ20_2102
location: <399353..>400633
location: region:399353-400633:1
so has part: feature:399353-400633:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:399353-400633:1:exon

AWJ20_2102
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: VPS45
locus tag: AWJ20_2102
note: Protein of the Sec1p/Munc-18 family; essential for vacuolar protein sorting; required for the function of Pep12p and the early endosome/late Golgi SNARE Tlg2p; essential for fusion of Golgi-derived vesicles with the prevacuolar compartment; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 7720726]; GO_component: GO:0031201 - SNARE complex [Evidence IPI] [PMID 10397773]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9624182]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 7720726]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0000149 - SNARE binding [Evidence IPI] [PMID 16769821]; GO_function: GO:0051082 - unfolded protein binding [Evidence IMP,IPI] [PMID 11432826]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 10545112]; GO_process: GO:0006895 - Golgi to endosome transport [Evidence IGI] [PMID 9335586]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IMP] [PMID 7720726]; GO_process: GO:0048210 - Golgi vesicle fusion to target membrane [Evidence IMP] [PMID 9650782]; GO_process: GO:0035543 - positive regulation of SNARE complex assembly [Evidence IMP] [PMID 11432826]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 7628704]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007035 - vacuolar acidification [Evidence IMP] [PMID 7628704]; GO_process: GO:0000011 - vacuole inheritance [Evidence IMP] [PMID 1493335]; GO_process: GO:0007033 - vacuole organization [Evidence IMP] [PMID 9650782]; GO_process: GO:0006904 - vesicle docking involved in exocytosis [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]
codon start: 1
product: Vps45p
translation: MKQRPLIRFDRNSSMAKKLAHEVSYIVKQERTQLFDFRKPDTAPILLILDRRNDPITPLLTPWTYQAMVHELVGIQNNRVDLSNVPDISKDLKEIVLSADKDPFFAKTMYLNFGDLGASIKDYVSQYQAKTKSNSVIESIADMKRFVEDYPEFRRLSGNVSKHVTLVSELSRLVSTNGDLLEVSELEQSLACNDSHNSDMKNVQQMLVQSQVSANSKLRLVALYALRYQYHSNNATEALLGLLGTQHPEIASKIHAVRILVNSYAGGKQRQENLFASSSFFARAQSGFKGLKGVENVYTQHEPLLKTTLTNLIKGKLKKTTHPYYDPGDGSLPSWAVHGMGSGPGSNSDDGEKPQDIIIFMVGGTTYEEARVVAEMNAVARGVRILIGGTTIHNSQSFLNDIEDAGSRWPPPPPATASERLASRVH
SIO_010081: AWJ20_2102
subclass of: SO_0000673
so part of: AWJ20_2102
location: 399353..400633
location: region:399353-400633:1
so has part: feature:399353-400633:1:exon

XP_018736984.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:399353-400633:1:exon

AWJ20_2103
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CBC2
locus tag: AWJ20_2103
so part of: sequence
location: complement(<401313..>401825)
location: region:401313-401825:-1
so has part: feature:401313-401825:-1:exon
subclass of: SO_0000010

30033978
type: Gene
SIO_000068: ncbigene

position:401313:-1
position: 401313
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:401825:-1
position: 401825
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:401313-401825:-1:exon

AWJ20_2103
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CBC2
locus tag: AWJ20_2103
product: Cbc2p
transcript id: XM_018879030.1
SIO_010081: AWJ20_2103
subclass of: SO_0000673
so part of: AWJ20_2103
location: complement(<401313..>401825)
location: region:401313-401825:-1
so has part: feature:401313-401825:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:401313-401825:-1:exon

AWJ20_2103
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CBC2
locus tag: AWJ20_2103
inference: similar to AA sequence:KEGG_Orthology:K12883
note: Small subunit of the heterodimeric cap binding complex with Sto1p; interacts with Npl3p, possibly to package mRNA for export from the nucleus; may have a role in telomere maintenance; contains an RNA-binding motif; GO_component: GO:0000243 - commitment complex [Evidence IDA] [PMID 8682299]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005846 - nuclear cap binding complex [Evidence IEA]; GO_component: GO:0005846 - nuclear cap binding complex [Evidence IDA] [PMID 8811086]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0000339 - RNA cap binding [Evidence IEA]; GO_function: GO:0000339 - RNA cap binding [Evidence IDA,ISS] [PMID 8682299]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0045292 - mRNA cis splicing, via spliceosome [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 8682299]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Cbc2p
translation: MSRIDNPDLFTVHSTERTDGPSGYILRQAKRSQKGQDDLKAVETTKTLYVGNLSFYTSEEQIFELFSKAGEITRIIMGLDRFNKTPCGFCFVEYETHKQAVDCVKYINGTKLDDRVVKVDLDPGFVEGRQYGRGSSGGQVRDEFRDDYDPGRGGYGKRWSQAAQADRDAL
SIO_010081: AWJ20_2103
subclass of: SO_0000673
so part of: AWJ20_2103
location: complement(401313..401825)
location: region:401313-401825:-1
so has part: feature:401313-401825:-1:exon

XP_018736985.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:401313-401825:-1:exon

AWJ20_2104
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: DJP1
locus tag: AWJ20_2104
so part of: sequence
location: <404526..>406079
location: region:404526-406079:1
so has part: feature:404526-406079:1:exon
subclass of: SO_0000010

30033979
type: Gene
SIO_000068: ncbigene

position:404526:1
position: 404526
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:406079:1
position: 406079
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:404526-406079:1:exon

AWJ20_2104
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: DJP1
locus tag: AWJ20_2104
product: Djp1p
transcript id: XM_018879031.1
SIO_010081: AWJ20_2104
subclass of: SO_0000673
so part of: AWJ20_2104
location: <404526..>406079
location: region:404526-406079:1
so has part: feature:404526-406079:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:404526-406079:1:exon

AWJ20_2104
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: DJP1
locus tag: AWJ20_2104
note: Cytosolic J-domain-containing protein; required for peroxisomal protein import and involved in peroxisome assembly, homologous to E. coli DnaJ; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9679141]; GO_function: GO:0051087 - chaperone binding [Evidence ISS] [PMID 9679141]; GO_process: GO:0016558 - protein import into peroxisome matrix [Evidence IMP] [PMID 9679141]
codon start: 1
product: Djp1p
translation: MVVDTAYYEILEVSTDASELDIKRAYRKMAIRHHPDKNPDDPTAHERFQAIGEAYQVLSDPDLRKRYDQFGKEQAVPDAGFEDPAEFFTTIFGGEAFADLIGEISLIKDLTKTMEIASLDDDEDDLVTGEKKSEVKADAEKTSTPGAGGSGLSPTAAAEASPLNSASTKTGGHSPSGSATTATSPFPNVQSPQPSYGAAEARPAATSPLPGTKSGKGTPVLAAITAGPDSDAHSTASSSTATEKKKEKKDKKSKNSLSKEQKAELEQYEIERQKAKAERLETLRVKLIDRISVWTETGKDDAVTYAFKEKTRLEAENLKMESFGIELLHAIGHTYYSKGSTLLKSQKFLGISGFFSRVKEKGTLAKDTWNTISSALDAQSSLQEMARAEEKGGDEWTEERRVEMERTLLGKILAAAWNGSRYEIQSVLREVCDQVLYDKSVPMSKRLERAQALVIIGSIFKSTVRTAEEAAEAQMFEELVAEAAASKKKKKDKHQHQTAAEKSADAASAAASAAASH
SIO_010081: AWJ20_2104
subclass of: SO_0000673
so part of: AWJ20_2104
location: 404526..406079
location: region:404526-406079:1
so has part: feature:404526-406079:1:exon

XP_018736986.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:404526-406079:1:exon

AWJ20_2105
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2105
so part of: sequence
location: complement(<406313..>407005)
location: region:406313-407005:-1
so has part: feature:406313-407005:-1:exon
subclass of: SO_0000010

30033980
type: Gene
SIO_000068: ncbigene

position:406313:-1
position: 406313
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:407005:-1
position: 407005
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:406313-407005:-1:exon

AWJ20_2105
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2105
product: hypothetical protein
transcript id: XM_018879032.1
SIO_010081: AWJ20_2105
subclass of: SO_0000673
so part of: AWJ20_2105
location: complement(<406313..>407005)
location: region:406313-407005:-1
so has part: feature:406313-407005:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:406313-407005:-1:exon

AWJ20_2105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2105
codon start: 1
product: hypothetical protein
translation: MSRIETAALETYSACDVADALVKNGLADGGFIPHLVQQSPERPPETAVTGPAYTVLYAPIDDPRPAVASHYIDSAPEGSVVVLATTPDTQLSTAPYTTINNALYGGLMSTRAKFLGCKGSVVLGKIRDISEHRSLNYPVYSYGLGIAAPNKVAKVVGVNVPLTVPSSDLTIHPGDQIVGDENGVAVIPQRLLQNVIQDIPPRVKADQLAAEDIKSGVPAAEAQKTRRKNL
SIO_010081: AWJ20_2105
subclass of: SO_0000673
so part of: AWJ20_2105
location: complement(406313..407005)
location: region:406313-407005:-1
so has part: feature:406313-407005:-1:exon

XP_018736987.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:406313-407005:-1:exon

AWJ20_2106
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2106
so part of: sequence
location: complement(<407804..>409573)
location: region:407804-409573:-1
so has part: feature:407804-409573:-1:exon
subclass of: SO_0000010

30033981
type: Gene
SIO_000068: ncbigene

position:407804:-1
position: 407804
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:409573:-1
position: 409573
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:407804-409573:-1:exon

AWJ20_2106
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2106
product: Uric acid-xanthine permease (UAPA transporter)
transcript id: XM_018879033.1
SIO_010081: AWJ20_2106
subclass of: SO_0000673
so part of: AWJ20_2106
location: complement(<407804..>409573)
location: region:407804-409573:-1
so has part: feature:407804-409573:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:407804-409573:-1:exon

AWJ20_2106
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2106
codon start: 1
product: Uric acid-xanthine permease (UAPA transporter)
translation: MTASNNIIDPVVVYADEEELPHPIAQTKTATTIRSTAETIRRKITTREGILGDFDYAYLFTPRIPFYTSMKERQSSEPTRSSTVFFGLNSSIPLLLGIVLGLQHCLAMLAGIITPPIIISSMANLTTEDSEYLVSASLIACGFLSMVQIIRFRILKTKYYIGTGLLSVVGTSFSTISVVSTAFPQFYKNGFCPSDANGKPLPCPDAYGALLGTCAVCGLIEVLLSFCPPKILQKIFPPLVTGPVVLLIGTSLVQSGFQDWVGGSGCATPGTICPSPGAPHALPWGSAQFIGLGFLAFVCIVLCEKWGSPFMKSCSIVISLIIGCIVAAACGYFDRSTIDAAPVANFMWVKTFRLSVAGNMVLPVLSVYIVCMMETIGDVTATSDVSRQPVEGDLYDSRIQGGVLADGLNSIIAALMTITPMSTFAQNNGVISLTQCANRVAGLWACFFLIIMGIFSKFAGAIVAIPKPVLGGVTTFLFSSVAVSGIKIISSIPFTRRDRFVLTASLMFGFAALLVPNWFSQVFTYQGDNNRLKGLLDAVIIFMETPYSIAGFVGVIVNLVIRQEFDVATSIEDLDGTENVHLPGAETEK
SIO_010081: AWJ20_2106
subclass of: SO_0000673
so part of: AWJ20_2106
location: complement(407804..409573)
location: region:407804-409573:-1
so has part: feature:407804-409573:-1:exon

XP_018736988.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:407804-409573:-1:exon

AWJ20_2107
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CLG1
locus tag: AWJ20_2107
so part of: sequence
location: <414602..>416371
location: region:414602-416371:1
so has part: feature:414602-416371:1:exon
subclass of: SO_0000010

30033982
type: Gene
SIO_000068: ncbigene

position:414602:1
position: 414602
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:416371:1
position: 416371
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:414602-416371:1:exon

AWJ20_2107
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CLG1
locus tag: AWJ20_2107
product: Clg1p
transcript id: XM_018879034.1
SIO_010081: AWJ20_2107
subclass of: SO_0000673
so part of: AWJ20_2107
location: <414602..>416371
location: region:414602-416371:1
so has part: feature:414602-416371:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:414602-416371:1:exon

AWJ20_2107
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CLG1
locus tag: AWJ20_2107
note: Cyclin-like protein that interacts with Pho85p; has sequence similarity to G1 cyclins PCL1 and PCL2; GO_component: GO:0000307 - cyclin-dependent protein kinase holoenzyme complex [Evidence IPI] [PMID 9032248]; GO_function: GO:0016538 - cyclin-dependent protein serine/threonine kinase regulator activity [Evidence ISA] [PMID 8212900]; GO_function: GO:0016538 - cyclin-dependent protein serine/threonine kinase regulator activity [Evidence IPI] [PMID 9032248]; GO_function: GO:0019901 - protein kinase binding [Evidence IEA]; GO_process: GO:0016239 - positive regulation of macroautophagy [Evidence IMP] [PMID 20417603]; GO_process: GO:0000079 - regulation of cyclin-dependent protein serine/threonine kinase activity [Evidence IEA]
codon start: 1
product: Clg1p
translation: MPGLPYYNDQMVTPPDYLVNHPAYGHNMPATRYASNPAPPQPYSYGMVAPAQAISAPYDYPYKQSIRYQQLQQQARAHAQAQAQAQAQAQAQQHSQDYQDYQQQRQAQSSSVQAHLPHQLQSQPQLQLQMPQTHVYAHQPQSQPGPHQSHTRHHHATSFSSNGTTFFVPTVPLDQMAPHMAPAGSSNGLRPALGPAIAPVVGQTGVSAPGTGHSVNGTAPAGAAAAAQAQAQPPTGGVSATLDYEIDQMSDFLSTMAFGIMVPMASTNQFTWDNPSFTAYKKFVCQVLTATRLPKSTIILALVYLSKKWAISKPTVVECDSSVVYTVLVVALLLANKFHDDNTFTNKSWNEATGIPVKELTTVEAQWLREIQWSLSLNQNDLKGWQKWNHCWKVYMSSKAAAVAAATVKQMSPYRSEAKEKYSDGLPSPTSPVYYSRDSSPRSNSPRRATYTIPKWYETANNTPVNAISSGRRSASQQHSSAALAAVTSNTSEPFVSYFQQSFAIPGTSAYDEEKAVDSASYNRRAIPGAYYNYPTHHHHAHHHQYPQSHYMAAYNHLAGCSCSLCVFEPIKQPAIHNGQWFGSSVVAC
SIO_010081: AWJ20_2107
subclass of: SO_0000673
so part of: AWJ20_2107
location: 414602..416371
location: region:414602-416371:1
so has part: feature:414602-416371:1:exon

XP_018736989.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:414602-416371:1:exon

AWJ20_2108
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2108
so part of: sequence
location: complement(<416740..>418065)
location: region:416740-418065:-1
so has part: feature:416740-418065:-1:exon
subclass of: SO_0000010

30033983
type: Gene
SIO_000068: ncbigene

position:416740:-1
position: 416740
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:418065:-1
position: 418065
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:416740-418065:-1:exon

AWJ20_2108
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2108
product: 2-aminoadipate transaminase
transcript id: XM_018879035.1
SIO_010081: AWJ20_2108
subclass of: SO_0000673
so part of: AWJ20_2108
location: complement(<416740..>418065)
location: region:416740-418065:-1
so has part: feature:416740-418065:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:416740-418065:-1:exon

AWJ20_2108
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2108
note: Protein with 2-aminoadipate transaminase activity; shares amino acid similarity with the aminotransferases Aro8p and Aro9p; YER152C is not an essential gene; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0047536 - 2-aminoadipate transaminase activity [Evidence IDA] [PMID 19342587]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]
codon start: 1
product: 2-aminoadipate transaminase
translation: MSVSKVKKVNFFRGHPSNSLLGPSSHYVLKASENVLSPAHRPGDDDDEDRHPLTYGSDPGSLTVRKQIAKWTYPDLSADKEQIYADSINLTNGASFGAGGALLQCTSAHSGFTKQAFIVSPTYFLINSVFLDAGFADKFSPIEQRADGSIDLVALEKLLVHFDKEPEVSYEDAAKYIQDDSRPRRKLYKYVMYLVPTFSNPRGTVIPLSDRLKLLELARAHDMLLLCDDVYDWLYYKADSINDLPPRLVTLDRESTTDSSSYGNTISNCTFSKLVGPGLRVGWQETVSPRLAQQLCQGGAVRSGGTPAHLNTMLVGSLLSLGYMESILKDLRSVFGDRSKHMRQDFEKYLPQGTQIEGGEGGYFFWVTLPEEYNGRAIAEQCLKKNVVLAEAHNFQVAHGPTPRVPINDNSFRICFAYHTVEESQQGIQVWGEVCEENKNK
SIO_010081: AWJ20_2108
subclass of: SO_0000673
so part of: AWJ20_2108
location: complement(416740..418065)
location: region:416740-418065:-1
so has part: feature:416740-418065:-1:exon

XP_018736990.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:416740-418065:-1:exon

AWJ20_2109
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: KIP3
locus tag: AWJ20_2109
so part of: sequence
location: complement(<418614..>421067)
location: region:418614-421067:-1
so has part: feature:418614-421067:-1:exon
subclass of: SO_0000010

30033984
type: Gene
SIO_000068: ncbigene

position:418614:-1
position: 418614
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:421067:-1
position: 421067
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:418614-421067:-1:exon

AWJ20_2109
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: KIP3
locus tag: AWJ20_2109
product: tubulin-dependent ATPase KIP3
transcript id: XM_018879036.1
SIO_010081: AWJ20_2109
subclass of: SO_0000673
so part of: AWJ20_2109
location: complement(<418614..>421067)
location: region:418614-421067:-1
so has part: feature:418614-421067:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:418614-421067:-1:exon

AWJ20_2109
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: KIP3
locus tag: AWJ20_2109
inference: similar to AA sequence:KEGG_Orthology:K10401
note: Kinesin-related antiparallel sliding motor protein involved in mitotic spindle positioning; sliding activity promotes bipolar spindle assembly and maintenance of genome stability; also inhibits spindle elongation and promotes spindle disassembly in late anaphase; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 9693366]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005871 - kinesin complex [Evidence IEA]; GO_component: GO:0005871 - kinesin complex [Evidence TAS] [PMID 9153752]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005880 - nuclear microtubule [Evidence IDA] [PMID 9693366]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008017 - microtubule binding [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008574 - plus-end-directed microtubule motor activity [Evidence IDA] [PMID 16906145]; GO_function: GO:0008574 - plus-end-directed microtubule motor activity [Evidence IDA] [PMID 16906148]; GO_function: GO:0070463 - tubulin-dependent ATPase activity [Evidence IDA] [PMID 16906148]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IMP] [PMID 16906148]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IGI,IMP] [PMID 9281582]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0007018 - microtubule-based movement [Evidence IEA]; GO_process: GO:0051228 - mitotic spindle disassembly [Evidence IMP] [PMID 23851487]; GO_process: GO:0051228 - mitotic spindle disassembly [Evidence IMP] [PMID 9813090]; GO_process: GO:0030472 - mitotic spindle organization in nucleus [Evidence IGI,IMP] [PMID 10525539]; GO_process: GO:0031115 - negative regulation of microtubule polymerization [Evidence IMP] [PMID 24616221]; GO_process: GO:0…
codon start: 1
product: tubulin-dependent ATPase KIP3
translation: MQQALFNGGGGNSNGSGSSSSNGMRQNRIREHRFVFDRLFDDTATQNDVYCHTTRPLLDNVLDGYNATVFAYGATGCGKTHTISGNPSQPGIIFLTMKELFERIDALRDTKTIDLSLSYLEIYNETIRDLLEPAGSGPGPKRILQLRENADKRISVSNLSSHKPENVDQVMDMILQGNQNRTMSPTEANAVSSRSHAVLQINITQKARTAELSEAHTFATLSIIDLAGSERASATKNRGERLIEGANINKSLLALGNCINALCDPRQRGHVPYRDSKLTRLLKFSLGGNCKTVMIVCVSPSSQHYDETLNTLKYADRAKKIKTKVSRNQHSLDRHVGSYLKMITEQRAEIEELRNREAKVIQEALDKDRMTREKRLKALEEALESLDAAVEKSRSEYSNKSVCISKLRTLSLQISQIDAIAEALVENSKQYQLPGMEVFQSALQMAKNKATAEQGKIQQYLQSINASQAIDSAATILSRRLQETSGWSKQDSTNFENYLNWKKSSLENELLQKSLTGTPSAISLNVVARLLFKCIGRLESLRSQPGEIIAGEVTLLTKELLNDMERSNILTEPTGCESNAFDLSLLNQPQQPLLHTSSVMNNVVHMTASPKRLSSSRRVSILKKKSPRLLRRSSVLMRASSPLKPRKTSKRVRWEDSEDTDSLANDMTESASDMGLSDSSMSVDRSTPTVAPLTDPRVTRLMSPLREVTLDSDINSSIDYSVSHPSGMGKKIGPRSDLTRRSLNKPRPSILGINKHAPGRVEKENSSSPISSLDNQSILLSPSSTPPVPTLSSRSSGTPFHLAATASSSMKQNLRRS
SIO_010081: AWJ20_2109
subclass of: SO_0000673
so part of: AWJ20_2109
location: complement(418614..421067)
location: region:418614-421067:-1
so has part: feature:418614-421067:-1:exon

XP_018736991.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:418614-421067:-1:exon

AWJ20_2110
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: OXA1
locus tag: AWJ20_2110
so part of: sequence
location: <423686..>425777
location: region:423686-425777:1
so has part: feature:423686-425777:1:exon
subclass of: SO_0000010

30033986
type: Gene
SIO_000068: ncbigene

position:423686:1
position: 423686
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:425777:1
position: 425777
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:423686-425777:1:exon

AWJ20_2110
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: OXA1
locus tag: AWJ20_2110
product: Oxa1p
transcript id: XM_018879038.1
SIO_010081: AWJ20_2110
subclass of: SO_0000673
so part of: AWJ20_2110
location: join(<423686..423807,424616..>425777)
location: region:423686-425777:1
so has part: feature:423686-423807:1:exon
so has part: feature:424616-425777:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:423686-423807:1:exon

position:423807:1
position: 423807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:424616-425777:1:exon

position:424616:1
position: 424616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

AWJ20_2110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: OXA1
locus tag: AWJ20_2110
inference: similar to AA sequence:KEGG_Orthology:K03217
note: Mitochondrial inner membrane insertase; mediates the insertion of both mitochondrial- and nuclear-encoded proteins from the matrix into the inner membrane; also has a role in insertion of carrier proteins into the inner membrane; acts as a voltage-gated ion channel, activated by substrate peptides; interacts with mitochondrial ribosomes; conserved from bacteria to animals; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030061 - mitochondrial crista [Evidence IDA] [PMID 22513091]; GO_component: GO:0097002 - mitochondrial inner boundary membrane [Evidence IDA] [PMID 22513091]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 14657017]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 19783770]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005216 - ion channel activity [Evidence IDA] [PMID 22829595]; GO_function: GO:0032977 - membrane insertase activity [Evidence IMP] [PMID 9285818]; GO_function: GO:0032977 - membrane insertase activity [Evidence IMP] [PMID 9428747]; GO_function: GO:0097177 - mitochondrial ribosome binding [Evidence IDA] [PMID 14657018]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IGI,IMP] [PMID 18826960]; GO_process: GO:0033615 - mitochondrial proton-transporting ATP synthase complex assembly [Evidence IMP] [PMID 17344477]; GO_process: GO:0045039 - protein import into mitochondrial inner membrane [Evidence IMP] [PMID 22846909]; GO_process: GO:0051205 - protein insertion into membrane [Evidence IEA]; GO_process: GO:0032979 - protein insertion into mitochondrial membrane from inner side [Evidenc…
codon start: 1
product: Oxa1p
translation: MLLREDTLPDIGLATFETNPEPKSTVASPEPRTGEAEDDEPYGSSVLQQSVFGVRPALRQTKAFPGFAKRFNSSQVASATTSSTNGTTETVSELAASAGSAIQTEIAPIVQSASETIQAVVDTVSPDQIGYFQSVGLAQSWWWPPGMFQHIFEIVHVSTGLPWWATIAMVTVGMRAVMFPMYLKASNATAKMTALKPELNRLMKDYTNSDDPIAAQKTLMERKKLMLAHNVKTSHLLLPMASVPFFIGVFSALNGMSKVPVHGLTSEGALWFTNLAAADPYVGLQLITALFYATTFKLGGETGANTMSPAMKKIFTYMPLIAVPMTMSLPASVCMYFALNGVLSVGQTFLLQNKTFRNKVGLAPIVKPAMNPEDNLSIMETLKQSFEKTKQRAEKAQREAERELRLKKEKEAEERSKYVQFTKKPRK
SIO_010081: AWJ20_2110
subclass of: SO_0000673
so part of: AWJ20_2110
location: join(423686..423807,424616..425777)
location: region:423686-425777:1
so has part: feature:423686-423807:1:exon
so has part: feature:424616-425777:1:exon

XP_018736992.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:423686-423807:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:424616-425777:1:exon

AWJ20_2111
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: LPX1
locus tag: AWJ20_2111
so part of: sequence
location: complement(<425996..>427117)
location: region:425996-427117:-1
so has part: feature:425996-427117:-1:exon
subclass of: SO_0000010

30033987
type: Gene
SIO_000068: ncbigene

position:425996:-1
position: 425996
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:427117:-1
position: 427117
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:425996-427117:-1:exon

AWJ20_2111
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: LPX1
locus tag: AWJ20_2111
product: Lpx1p
transcript id: XM_018879039.1
SIO_010081: AWJ20_2111
subclass of: SO_0000673
so part of: AWJ20_2111
location: complement(<425996..>427117)
location: region:425996-427117:-1
so has part: feature:425996-427117:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:425996-427117:-1:exon

AWJ20_2111
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: LPX1
locus tag: AWJ20_2111
note: Peroxisomal matrix-localized lipase; required for normal peroxisome morphology; contains a peroxisomal targeting signal type 1 (PTS1) and a lipase motif; peroxisomal import requires the PTS1 receptor, Pex5p and self-interaction; transcriptionally activated by Yrm1p along with genes involved in multidrug resistance; oleic acid inducible; GO_component: GO:0005782 - peroxisomal matrix [Evidence IEA]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 12135984]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016298 - lipase activity [Evidence IDA] [PMID 18199283]; GO_function: GO:0016298 - lipase activity [Evidence ISS] [PMID 9200815]; GO_function: GO:0004806 - triglyceride lipase activity [Evidence IDA] [PMID 24187129]; GO_process: GO:0007031 - peroxisome organization [Evidence IEP] [PMID 12135984]; GO_process: GO:0019433 - triglyceride catabolic process [Evidence IGI] [PMID 24187129]
codon start: 1
product: Lpx1p
translation: MTITKERFVIDAHHPRESFDSTVSPDDRLKLVYNVYKDDRFDNSTADPTTLINLVFAHGTQMNKEIWQYMIELFYNDFGARLGNVVAIDAINHGESLILNNGKLGPYITWSDGGKDINCVIRALNNVGPTILIGQSMGGAMCTYAVIHEPGLIDSIVIIDPVLYLDPEYYTNEHVTALTSDRFKKLEKYIKTKFQNREEYETYMSKKTISRGFHPRVLKDYIDTSAIENPDGTISTINSLDQQLISYLSSQPTLRDLYSLLTAIDSEVLYVCGDIADWNPPDAHEKVIERLRYGSLKIIPGGKHLVVFDMPDETYAAIKDFVDRRGKRGSELIQKARARSNYSLNQRLEFAHEGRKYQLESLAAGKRFVYSKL
SIO_010081: AWJ20_2111
subclass of: SO_0000673
so part of: AWJ20_2111
location: complement(425996..427117)
location: region:425996-427117:-1
so has part: feature:425996-427117:-1:exon

XP_018736993.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:425996-427117:-1:exon

AWJ20_2112
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: GAL83
locus tag: AWJ20_2112
so part of: sequence
location: <429657..>431081
location: region:429657-431081:1
so has part: feature:429657-431081:1:exon
subclass of: SO_0000010

30033988
type: Gene
SIO_000068: ncbigene

position:429657:1
position: 429657
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:431081:1
position: 431081
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:429657-431081:1:exon

AWJ20_2112
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: GAL83
locus tag: AWJ20_2112
product: Gal83p
transcript id: XM_018879040.1
SIO_010081: AWJ20_2112
subclass of: SO_0000673
so part of: AWJ20_2112
location: <429657..>431081
location: region:429657-431081:1
so has part: feature:429657-431081:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:429657-431081:1:exon

AWJ20_2112
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: GAL83
locus tag: AWJ20_2112
note: One of three possible beta-subunits of the Snf1 kinase complex; allows nuclear localization of the Snf1 kinase complex in the presence of a nonfermentable carbon source; contains glycogen-binding domain; GAL83 has a paralog, SIP2, that arose from the whole genome duplication; GO_component: GO:0031588 - AMP-activated protein kinase complex [Evidence IDA] [PMID 12393914]; GO_component: GO:0031588 - AMP-activated protein kinase complex [Evidence IPI] [PMID 7813428]; GO_component: GO:0031588 - AMP-activated protein kinase complex [Evidence IPI] [PMID 9121458]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17237508]; GO_component: GO:0005641 - nuclear envelope lumen [Evidence IDA] [PMID 17237508]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11331606]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 17237508]; GO_function: GO:0004679 - AMP-activated protein kinase activity [Evidence IGI] [PMID 10990457]; GO_function: GO:0004679 - AMP-activated protein kinase activity [Evidence IMP] [PMID 7813428]; GO_process: GO:0007155 - cell adhesion [Evidence IMP] [PMID 12556493]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 12556493]; GO_process: GO:0006468 - protein phosphorylation [Evidence IGI] [PMID 10990457]; GO_process: GO:0043254 - regulation of protein complex assembly [Evidence IGI] [PMID 9121458]; GO_process: GO:0007165 - signal transduction [Evidence IGI] [PMID 10990457]
codon start: 1
product: Gal83p
translation: MGNSSSQEDDAANKQQQQQHQQQQHHRHHFHHSHHKGSNTSTPSHDQEEFPPVPPQGFDQIPIAGVGVTATTSVSKEQATVSPPGGTSGNTGSLNQHQRSSSFHHEEFASASHEENVRQVPATATTPSSATTAQPPAASAGVGGSNKPVVQPLQSYDANSTNSNDGAKRPPLRRKSTLLLDEPAEMDEEEMELSKLKLTNELKPLSRAGSGEEVVLTNQDDYQGNVFSTVIDWKQGGNKVYVTGTFTGWRKMIRLSKVSEEQLQNQKAHADASGDNQQPPLASTPPTISKDLFSVVLKLPKGTHRLRFVVDNELRCSDFLPTATDSMGNLVNYIEVGVEEDRPVQSQSQAVAGGIGGDDEGDGEYEKFNEDDEMLREPVLQYGNEIPSVFTDPEVMDQFVSSDFVTPPQLPPHLEGVILNSNSTEKDNNSILPIPNHVVLNHLATTSIKHNVLAVASISRYSRKYVTQILYAPL
SIO_010081: AWJ20_2112
subclass of: SO_0000673
so part of: AWJ20_2112
location: 429657..431081
location: region:429657-431081:1
so has part: feature:429657-431081:1:exon

XP_018736994.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:429657-431081:1:exon

AWJ20_2113
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: BEM2
locus tag: AWJ20_2113
so part of: sequence
location: <435444..>441317
location: region:435444-441317:1
so has part: feature:435444-441317:1:exon
subclass of: SO_0000010

30033989
type: Gene
SIO_000068: ncbigene

position:435444:1
position: 435444
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:441317:1
position: 441317
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:435444-441317:1:exon

AWJ20_2113
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: BEM2
locus tag: AWJ20_2113
product: Bem2p
transcript id: XM_018879041.1
SIO_010081: AWJ20_2113
subclass of: SO_0000673
so part of: AWJ20_2113
location: <435444..>441317
location: region:435444-441317:1
so has part: feature:435444-441317:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:435444-441317:1:exon

AWJ20_2113
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: BEM2
locus tag: AWJ20_2113
note: Rho GTPase activating protein (RhoGAP); involved in the control of cytoskeleton organization and cellular morphogenesis; required for bud emergence; potential GAP for Rho4p; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 17914457]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 17914457]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17914457]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 17914457]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 17914457]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17914457]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IDA] [PMID 7962098]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IGI] [PMID 7579704]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IC] [PMID 7579704]; GO_process: GO:0035024 - negative regulation of Rho protein signal transduction [Evidence IGI,IMP] [PMID 17914457]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0043087 - regulation of GTPase activity [Evidence IEA]; GO_process: GO:0051056 - regulation of small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]
codon start: 1
product: Bem2p
translation: MERRTQALRGGSAAGGSDGLNAAKDGWVNRHASSASATTAVAGSGSGAGISSSASSNTLVPSGSISSNLTALASGPGGSGGTNGAAVTSQVYSWRLTRAVLKNGTLLLYKPPTDLGIKSFDPSLEPAHPLSPNLSSPTSATSGGGGHKRVGSVSTATAASSSSASVSAAAAAAGSRSFHSLSYRGFDVHPDLLFDSQGKIVNGSFEAICHSILFTGDEDFATTAVLTIPLMGDVVRALEMMKEYVLSVARQAHSGGGGPNAQAIAVRVKLVIDTMLTNFKGMLLNNSIHASLQQLADSVSSYNDQISTALKLSIYQKHQRMNKMLTYTREDTEVLWSMQQKVTDSMSERLHAFLGRIDSSIGSDSISSIANLPPRQQVAHNLSGSGSGGGSGGTGGVGGGLSAQQLNIPPDLFIELTSTDFLANQISCFHLKFYKQWSPAIDISLLFKTNYSYHRYNPLVFDANNLHFLGVLLIDHLLSPKYSKLFDNSYRGRLLTHWINLGNSLKVCGDLVGWVAIVTAICSPAILRLRECWAYVPIELRENVGKDWGHELFELDRRAKMDLMSKRTFRVATEDIGVTYPKERSISFFADLTVKIDEGATSYKMCEDRVNRVRTVINSWKYFFDRIPQNDTFGLPPQPNAAVQKLLHSLLVTNYETPQLTQEEIFKLSLSVDPPKFGNYLKYHYSQQSPLMTGSFLPLIFTDTNATYKLFTKSSLISALSGVAGTGGASALSSSNKRLVRSGTTRSSDGTNASTIPTSASSNFYTHGGHSTLSTSSTLLSGGRNASTNLHRSNSFPPSNTKSSAMTTGVQDIDYFSREFVAKYASQHILMKNIRDVLNMGAKLYHINEDIVLKSLSEEYNSRPSSMIEAPSKHLSMSSRRVSTQFGSTVSPRTSVNGGTPDFSKVFESFAVSIDVVVKSANLERLVDILVLGVNGFASFVNQQDVDRQGNLPDFRIDMNVHTLTFFATFRSFCSPLELLTSLRKRFVGARSAAMSIDELTDKEREVAFDDVQFPNWDPVCEIPLDNNRAWGIVAQIQIGVLEACHLWVSQYFSDFADNVSLKEQFLELTEIFGTDIASWKGLQASSQINEDYSGYLETMEVLQKKVRNLFYKKSYRPNDVCPLIPQNPVGMRYENLPVGNTNVTFMKLEKFIDDINLVVSEYLGMVSVKEWMELFETLELQSAEINGFFHYSPPPYSSEDDFVIQDIFTYLESLYRENANGERAKTLDFFPPSIQELFRLRHNIISYLTYQIGDPLIHKDDRIQRMISILRMIGISKARMTFLDLFPKDETTDSDQLWMSQADNSGISTSVPSFIESCVIASVLRPESRLFANSWMQASREICKLYHRSSNPTSFASLEMFVPVIRGENLVFSGSKQPLSPCVGWTIERMFEIVCYVPNMSVENSSLINFDKRRFIYNLITNVSEMKGEIEDDNEDGSRVSNGSHRIQTVARRIAYIVNPDKTLYYTDKRTLKESVARDTKEYPRSYSKNKVFTSYVTLEAEKLKRDVRQRELIERQYRDVKKSLKSRYGSSSSSSGTIGSQTLSDKKSQRSRFGGLFKAVRPISMAFSGTFIPPSDRIVSVYELPDISTISDSKCKLLASINLANCDIIAVPNQHGNYGLFKVVVQDNNGSELVFQGLSDEDAAEWVRLATTGKRYATLRGQLQPSSSSSSPNAPASPVAFTRVFGVPIAVVCEREARDIPMVVDVLLNEIESRGLDEVGLYRVSGSLASVHALKAAFDSGQEVDMEDDRWFDINTVAGCFKLYLRELREPLLTTELFPEFVQCGSSGAGTEDMLKQLRVSIRKLPAPNYNLLRRLLRHLGQVAEHEANNKMKTPNLAIVFSMSFLPASAVDQMKAMQNVLNTMIIHHERLFGDDQPVEYSTEAAEITANTADLSLGETTNSHDQNHNTASDNQPDSSEPSTTHSGTENTDSQLPTGNQAGSKHDRDSFTEVSAY
SIO_010081: AWJ20_2113
subclass of: SO_0000673
so part of: AWJ20_2113
location: 435444..441317
location: region:435444-441317:1
so has part: feature:435444-441317:1:exon

XP_018736995.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:435444-441317:1:exon

AWJ20_2114
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MDM34
locus tag: AWJ20_2114
so part of: sequence
location: <442341..>443831
location: region:442341-443831:1
so has part: feature:442341-443831:1:exon
subclass of: SO_0000010

30033990
type: Gene
SIO_000068: ncbigene

position:442341:1
position: 442341
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:443831:1
position: 443831
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:442341-443831:1:exon

AWJ20_2114
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MDM34
locus tag: AWJ20_2114
product: ERMES complex subunit MDM34
transcript id: XM_018879042.1
SIO_010081: AWJ20_2114
subclass of: SO_0000673
so part of: AWJ20_2114
location: <442341..>443831
location: region:442341-443831:1
so has part: feature:442341-443831:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:442341-443831:1:exon

AWJ20_2114
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MDM34
locus tag: AWJ20_2114
inference: similar to AA sequence:KEGG_Orthology:K17775
codon start: 1
product: ERMES complex subunit MDM34
translation: MSFKFNWNSFNDESFYTRAKKLLTDALNKSNKPPIIVDKIIVQDLSLGSEAPDLEILEIGDLADDRFRGIFKLTYSGNASITLATKVQANPLNVYAQNAPGFCMPQFLGASSSLAMPLNLTLSDIVLSGIIILVFSKAKGLTLVFRNDPLEKIKVSSTFDALPGIAKFLQVQIENQIRVLFREELPTILHKLSQKWTPSGSEMSELMSLKSHTSSPISTEPSSPRLKPVSLMEINPDMPEFSPTNMLKLEALCASQRTLNLFTPAIPEAVYRSSLESFENARRKNGRDVQSLVGGDDLYDVMRLQTKQAQNRSSNITPKRRVIKIKRNKASDSTNSDTPSAEASAASTPISSSTPTSASTATSASSNTTSSTNTSSSLSPSSSNTSSNSSADLNSSKTTSIAFLPVIDESLASTSAIPSLDLKLPRQRRESILKPTSILEQDGKQAPSSKHEHEHVHWTHENALPKDKLFKDFFSRNVNIRPDDHTNNPPPPAYVA
SIO_010081: AWJ20_2114
subclass of: SO_0000673
so part of: AWJ20_2114
location: 442341..443831
location: region:442341-443831:1
so has part: feature:442341-443831:1:exon

XP_018736996.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:442341-443831:1:exon

AWJ20_2115
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2115
so part of: sequence
location: complement(<444091..>445053)
location: region:444091-445053:-1
so has part: feature:444091-445053:-1:exon
subclass of: SO_0000010

30033991
type: Gene
SIO_000068: ncbigene

position:444091:-1
position: 444091
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:445053:-1
position: 445053
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:444091-445053:-1:exon

AWJ20_2115
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2115
product: hypothetical protein
transcript id: XM_018879043.1
SIO_010081: AWJ20_2115
subclass of: SO_0000673
so part of: AWJ20_2115
location: complement(<444091..>445053)
location: region:444091-445053:-1
so has part: feature:444091-445053:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:444091-445053:-1:exon

AWJ20_2115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2115
codon start: 1
product: hypothetical protein
translation: MKIGTHSGTFHADESLAVYMLRLLPRFKDAELLRSRDNEQLETCDIIVDVGGKYEAPKYFDHHQREFNDTFDDEHKTRLSSAGLIYKHFGKEIIAQLTEVSVDDASIDVLYNKIYNEFIEAIDANDNGISAYPEDTPSSYRTGGITLPSLVSKLNPLWTEPNTDEVLDAKFLKASELMGTAFVSVVENYGKGWYPAKQHVQAAFDARDQYGSEGRIVVFDTFVPWKEHLYTIEKELGKEGEVLYVLYSDGKGWRIQAVAQSSSSFTSRKPLPEPWRGARDEKMSEITGVPGCVFTHVSGFIGGHKTREGALELAKLALQA
SIO_010081: AWJ20_2115
subclass of: SO_0000673
so part of: AWJ20_2115
location: complement(444091..445053)
location: region:444091-445053:-1
so has part: feature:444091-445053:-1:exon

XP_018736997.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:444091-445053:-1:exon

AWJ20_2116
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2116
so part of: sequence
location: complement(<445482..>448082)
location: region:445482-448082:-1
so has part: feature:445482-448082:-1:exon
subclass of: SO_0000010

30033992
type: Gene
SIO_000068: ncbigene

position:445482:-1
position: 445482
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:448082:-1
position: 448082
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:445482-448082:-1:exon

AWJ20_2116
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2116
product: putative carboxylic ester hydrolase
transcript id: XM_018879044.1
SIO_010081: AWJ20_2116
subclass of: SO_0000673
so part of: AWJ20_2116
location: complement(<445482..>448082)
location: region:445482-448082:-1
so has part: feature:445482-448082:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:445482-448082:-1:exon

AWJ20_2116
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2116
note: Putative acyltransferase with similarity to Eeb1p and Eht1p; has a minor role in medium-chain fatty acid ethyl ester biosynthesis; may be involved in lipid metabolism and detoxification; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence ISS] [PMID 16361250]; GO_process: GO:0051792 - medium-chain fatty acid biosynthetic process [Evidence IGI] [PMID 16361250]
codon start: 1
product: putative carboxylic ester hydrolase
translation: MVEQEAPARELWFFHDSPVELEDPSTPLPTATATPPQGTPTQSPRRSREKSPATFGAHFSESLRSRGRERSVSTGTPVNGTSGNTLKPRPSSGSLKDEESQNTPAKGSISYPVFSVTSLVGSVTPNLNWQAFSPYDCRLLNKEYNKPLEEEEEPVPVGCNRLYQVSLQSMDMTPIYWAPLTSPYNVHCSSWFFSTSLTPIEPSLEDAIEEAFQEIKPWTSTYLAELEAAITVPEAMTKLKTPITYFDGRSDVSVEVVFAPTFKRDSANELQPEQEEEEKEEEEEEDSNDKKGQDIDLAKGESEKNDQTAKEEDGAKDVNSDAASIASSVASGPESYPVAYIFSASSSVSIPYIFSSTSPAQLISSLVAGKAPPGTLFTVQRHFSWQDWKALRNLPDRPSDGDEYAPRKITQLVLVFHGIGQKLTERVESFNFTYAINSFRIQVSNFVDSQQLSQYIKEDTNILTLPINWRRIIDFENLKGTENKPKNSEFSLSDITMKSIPSVRNLISDVMLDIPYYMSRHKKLLLDAAAQEANRVYSLFTKINPEFEKSGGTVNIIGHSLGSSIAVDLLSSQPTDVTKCKPEELEKKRTLKFNVHNLFLVGSPVGFFLLLENAQLHPRELYDRKNKIDPGDTTHKYPYGCIAVRNVYNILHYSDPIAYYIGPTVDRLQVSLIETATLPSEKAFIVAQAADAAGWVNALTSRIPFMGSPKNESTKDITIQEKEKQMPDEEDAEVQILDEKTKPLKELLPGVTLNSEYVEVEPVTNPTDAQLPKPGQTVELEDRDFEKESSGEEKLILLNENGQIDWVIPLTVSLESVSQYVSMLTAHSGYWDSKDFARMVAIECGRAKGVDNTISQYRARKKNKSS
SIO_010081: AWJ20_2116
subclass of: SO_0000673
so part of: AWJ20_2116
location: complement(445482..448082)
location: region:445482-448082:-1
so has part: feature:445482-448082:-1:exon

XP_018736998.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:445482-448082:-1:exon

AWJ20_2117
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: LSC1
locus tag: AWJ20_2117
so part of: sequence
location: <450004..>451929
location: region:450004-451929:1
so has part: feature:450004-451929:1:exon
subclass of: SO_0000010

30033993
type: Gene
SIO_000068: ncbigene

position:450004:1
position: 450004
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:451929:1
position: 451929
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:450004-451929:1:exon

AWJ20_2117
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: LSC1
locus tag: AWJ20_2117
product: succinate--CoA ligase (GDP-forming) subunit alpha
transcript id: XM_018879045.1
SIO_010081: AWJ20_2117
subclass of: SO_0000673
so part of: AWJ20_2117
location: <450004..>451929
location: region:450004-451929:1
so has part: feature:450004-451929:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:450004-451929:1:exon

AWJ20_2117
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: LSC1
locus tag: AWJ20_2117
inference: similar to AA sequence:KEGG_Orthology:K01648
note: Alpha subunit of succinyl-CoA ligase; succinyl-CoA ligase is a mitochondrial enzyme of the TCA cycle that catalyzes the nucleotide-dependent conversion of succinyl-CoA to succinate; phosphorylated; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 15692048]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 9874242]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003878 - ATP citrate synthase activity [Evidence IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004775 - succinate-CoA ligase (ADP-forming) activity [Evidence IEA,IEA]; GO_function: GO:0004775 - succinate-CoA ligase (ADP-forming) activity [Evidence IDA,IMP,ISS] [PMID 9874242]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006104 - succinyl-CoA metabolic process [Evidence TAS] [PMID 9175438]; GO_process: GO:0006104 - succinyl-CoA metabolic process [Evidence IDA] [PMID 9874242]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence TAS] [PMID 9175438]
codon start: 1
product: succinate--CoA ligase (GDP-forming) subunit alpha
translation: MSLNGTAPPAYELFSNKTRAFVYGLQPRACQGMLDFDFICKRDVPSVAGVIYPFGGQFVTKMYWGTKETLLPVYQQVEKAAAKHPEVDVVVNFASSRSVYSSTMELLEYPQFRTIAIIAEGVPERRAREILYKAQKKGVTIIGPATVGGIKPGCFKIGNTGGMMDNIVASKLYRPGSVAYVSKSGGMSNELNNIIAQTTNGVYEGVAIGGDRYPGTTFIDHILRYQADPNCKIIALLGEVGGVEEYRVIEAVKSGKITKPIVAWAIGTCASMFKTEVQFGHAGSMANSDLETATAKNAAMKAAGFHVPDTFEDFPETLAQVYETLVKKGVIVPQPEPEVPKIPIDYSWAQELGLIRKPAAFISTISDDRGQELLYAGIPISDVFKDDIGIGGVMSLLWFRRRLPAYASKFLEMVLMLTADHGPAVSGAMNTIITTRAGKDLISSLVSGLLTIGTRFGGALDGAATEFTNAFDKGLSPRQFVDTMRKQNKLIPGIGHKVKSRNNPDFRVELVKDFVKKNFPSTTLLDYALAVEEVTTSKKDNLILNVDGAIAVSFIDLMRSSGAFTPEEVDEYLKNGVLNGLFVLGRSIGLIAHHLDQKRLKTGLYRHPWDDITYLVGQDAVSSANKRVEVDAKGVSKAKSK
SIO_010081: AWJ20_2117
subclass of: SO_0000673
so part of: AWJ20_2117
location: 450004..451929
location: region:450004-451929:1
so has part: feature:450004-451929:1:exon

XP_018736999.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:450004-451929:1:exon

AWJ20_2118
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: GTR2
locus tag: AWJ20_2118
so part of: sequence
location: complement(<452244..>453203)
location: region:452244-453203:-1
so has part: feature:452244-453203:-1:exon
subclass of: SO_0000010

30033994
type: Gene
SIO_000068: ncbigene

position:452244:-1
position: 452244
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:453203:-1
position: 453203
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:452244-453203:-1:exon

AWJ20_2118
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: GTR2
locus tag: AWJ20_2118
product: Gtr2p
transcript id: XM_018879046.1
SIO_010081: AWJ20_2118
subclass of: SO_0000673
so part of: AWJ20_2118
location: complement(<452244..>453203)
location: region:452244-453203:-1
so has part: feature:452244-453203:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:452244-453203:-1:exon

AWJ20_2118
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: GTR2
locus tag: AWJ20_2118
inference: similar to AA sequence:KEGG_Orthology:K16186
note: Putative GTP binding protein; negatively regulates Ran/Tc4 GTPase cycle; activates transcription; subunit of EGO and GSE complexes; required for sorting of Gap1p; localizes to cytoplasm and to chromatin; homolog of human RagC and RagD; GO_component: GO:0034448 - EGO complex [Evidence IPI] [PMID 15989961]; GO_component: GO:0034448 - EGO complex [Evidence IDA] [PMID 16732272]; GO_component: GO:1990131 - Gtr1-Gtr2 GTPase complex [Evidence IPI] [PMID 10388807]; GO_component: GO:1990131 - Gtr1-Gtr2 GTPase complex [Evidence IPI] [PMID 16143306]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10388807]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11073942]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 15989961]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0031902 - late endosome membrane [Evidence IDA] [PMID 16732272]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 18258182]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10388807]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11073942]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence ISA] [PMID 10388807]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0016237 - microautophagy [Evidence IMP] [PMID 15989961]; GO_process: GO:0032008 - positive regulation of TOR signaling [Evidence IGI,IMP] [PMID 19748353]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 18258182]; GO_process: GO:0015031 - protein transpor…
codon start: 1
product: Gtr2p
translation: MQPLETLYIESTAKPTYERFDSLVNFAVQELPGQLDMFEPSYDSERIFAQVGSLIYVIDSQDEYLYALQNLQQIIEYAFKINPAINFEVLIHKVDGLSDDFRLDTQRDIMQRVTDELVDANLEGVNIAFHLTSIFDHSIYEAFSRIIQKLVPELPVLENLLDILCQHSGIEKAFLFDVNSKIYLATDSSPVDVETYQVCSDFIDVAVDLDLLYKPSYTQQQQQPQTQQTPESNNSPGLAAVTNGSGPSQTPEGPGLKCTSKLHNGMVLYLSQMIRGLALVGMIRSEGVQKMTLVDYNVEIFRQGLTRVYAEDPLHPHPA
SIO_010081: AWJ20_2118
subclass of: SO_0000673
so part of: AWJ20_2118
location: complement(452244..453203)
location: region:452244-453203:-1
so has part: feature:452244-453203:-1:exon

XP_018737000.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:452244-453203:-1:exon

AWJ20_2119
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TYW3
locus tag: AWJ20_2119
so part of: sequence
location: <454004..>454867
location: region:454004-454867:1
so has part: feature:454004-454867:1:exon
subclass of: SO_0000010

30033995
type: Gene
SIO_000068: ncbigene

position:454004:1
position: 454004
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:454867:1
position: 454867
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:454004-454867:1:exon

AWJ20_2119
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TYW3
locus tag: AWJ20_2119
product: Tyw3p
transcript id: XM_018879047.1
SIO_010081: AWJ20_2119
subclass of: SO_0000673
so part of: AWJ20_2119
location: <454004..>454867
location: region:454004-454867:1
so has part: feature:454004-454867:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:454004-454867:1:exon

AWJ20_2119
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TYW3
locus tag: AWJ20_2119
inference: similar to AA sequence:KEGG_Orthology:K15450
note: tRNA methyltransferase required for synthesis of wybutosine; a modified guanosine found at the 3'-position adjacent to the anticodon of phenylalanine tRNA which supports reading frame maintenance by stabilizing codon-anticodon interactions; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0008175 - tRNA methyltransferase activity [Evidence IDA,IMP] [PMID 16642040]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IDA,IMP] [PMID 16642040]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0031591 - wybutosine biosynthetic process [Evidence IMP] [PMID 16642040]; GO_process: GO:0031591 - wybutosine biosynthetic process [Evidence IMP] [PMID 17150819]
codon start: 1
product: Tyw3p
translation: MRESDSEEMSQNPFDQKKRAILSQIESTDETHPDASPKGTLDVLLLPLIDVINSHSDYVTTSSCSGRVSVFLEGMKTASELGGKGDGGKWLFITHDPEELKSTDWWSLVTDHREHVSESDVSAGVSSIGNGEPAKYDGQRYVLYKFEAMILHVKCRDRASASALYTAAMSCGFRESGIGSNDLVGIRISLRLDVPIAYLNNDGTTTPLVPRQYIDHLQTISLDLFNKNTAKINQLHRTVASMIQAQQTAANKPQTAKETKEQRRERKHREGLLIQAQTRQITPEAPL
SIO_010081: AWJ20_2119
subclass of: SO_0000673
so part of: AWJ20_2119
location: 454004..454867
location: region:454004-454867:1
so has part: feature:454004-454867:1:exon

XP_018737001.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:454004-454867:1:exon

AWJ20_2120
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: DPS1
locus tag: AWJ20_2120
so part of: sequence
location: <455207..>456886
location: region:455207-456886:1
so has part: feature:455207-456886:1:exon
subclass of: SO_0000010

30033997
type: Gene
SIO_000068: ncbigene

position:455207:1
position: 455207
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:456886:1
position: 456886
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:455207-456886:1:exon

AWJ20_2120
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: DPS1
locus tag: AWJ20_2120
product: aspartate--tRNA ligase DPS1
transcript id: XM_018879049.1
SIO_010081: AWJ20_2120
subclass of: SO_0000673
so part of: AWJ20_2120
location: <455207..>456886
location: region:455207-456886:1
so has part: feature:455207-456886:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:455207-456886:1:exon

AWJ20_2120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: DPS1
locus tag: AWJ20_2120
inference: similar to AA sequence:KEGG_Orthology:K01876
note: Aspartyl-tRNA synthetase, primarily cytoplasmic; homodimeric enzyme that catalyzes the specific aspartylation of tRNA(Asp); class II aminoacyl tRNA synthetase; binding to its own mRNA may confer autoregulation; shares five highly conserved amino acids with human that when mutated cause leukoencephalopathy characterized by hypomyelination with brain stem and spinal cord involvement and leg spasticity (HBSL); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 16113655]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16113655]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 12888345]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004815 - aspartate-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004815 - aspartate-tRNA ligase activity [Evidence IDA] [PMID 8263943]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006422 - aspartyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006422 - aspartyl-tRNA aminoacylation [Evidence IDA] [PMID 8263943]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]
codon start: 1
product: aspartate--tRNA ligase DPS1
translation: MSEEIVKKTEELKIEEGSAAAAGAPAGEVVLGADGKPLSKSALKKLEKERAKEEKKRQIAERLAAEKAAREASEVDYSKEFYGKQPLNQSGEKTGEQRVQISNIDKSWAGKEVIFRARVHNSRMQSSKMCFMSLRQQDAVIQALLVVDSDTISKQMVKWAGSINLESIVVVYGKVEASPEEISSATVKDAEIKITKIFTIAETPAQLPILIEDASRSEAEAKEVGLPYVNLDTRLDARVIDLRTATNQAIFKISSGVCELFREFLIKKGFVEIHTPKIIPAASEGGANVFKVNYFKGEAFLAQSPQLYKQMLIAADFEKVFEIAPVFRAENSNTHRHMTEFVGLDLEMAFEEHYDEVIDVLVEMFMFIFTELKNRYAKEIALVRKQYPVEEFKLPKDGKMVRLHFKEGIQLLREVGGVDVPDLEDLSTEHEKLLGKIVREKYDTDFYILDKFPLAVRPFYTMPDAADSNYSNSYDFFMRGEEILSGAQRIHDANFLKTRMAAHEVDSNTVKDYVDAFSYGAPPHAGGGIGLERVVMFFLDLKNIRRASLFPRDPKRVRP
SIO_010081: AWJ20_2120
subclass of: SO_0000673
so part of: AWJ20_2120
location: 455207..456886
location: region:455207-456886:1
so has part: feature:455207-456886:1:exon

XP_018737002.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:455207-456886:1:exon

AWJ20_2121
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2121
so part of: sequence
location: <460693..>461982
location: region:460693-461982:1
so has part: feature:460693-461982:1:exon
subclass of: SO_0000010

30033998
type: Gene
SIO_000068: ncbigene

position:460693:1
position: 460693
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:461982:1
position: 461982
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:460693-461982:1:exon

AWJ20_2121
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2121
product: hypothetical protein
transcript id: XM_018879050.1
SIO_010081: AWJ20_2121
subclass of: SO_0000673
so part of: AWJ20_2121
location: <460693..>461982
location: region:460693-461982:1
so has part: feature:460693-461982:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:460693-461982:1:exon

AWJ20_2121
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2121
codon start: 1
product: hypothetical protein
translation: MEKFNLDFRPDFKRDVKPDFKPDFKIGEKQQSPPISTQFVQSPSSHSHLNRSSSSSPSSTVSSNTDQHSNNSNNSNNSSSNRLVRVIDTVVALYSYQSDKPFSLSFKKGDNIYVISKLPSGWWEGVTPSGSQGWFPSNYTQVVPGAQQNQLLFDSRPSIASHTSNDSMDPLAPATLADDDPWVSNLSSSTTSAHSSSASYARSNSIGGMTGTGIPLTTTLSSNSGIYTGSRKGSVTSYESSITEELTHNAAATDNGFTATKSTNAPCESYTRVNTSSDTYNYPPSFWLPQINNSGKLIFMNAGRLHVSSQIPWEKVDVNSLDKEIIYPNSLTVPQDLIQAPRVPTSISEGNRLFEKSVDPYADLVSFLWPPRCLRRLGLRPRPWLLLSLRSSRCVDEPSLSCEAGATRVWGGAPAAGGMCPSCTMLTRL
SIO_010081: AWJ20_2121
subclass of: SO_0000673
so part of: AWJ20_2121
location: 460693..461982
location: region:460693-461982:1
so has part: feature:460693-461982:1:exon

XP_018737003.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:460693-461982:1:exon

AWJ20_2122
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CDC25
locus tag: AWJ20_2122
so part of: sequence
location: <462016..>464856
location: region:462016-464856:1
so has part: feature:462016-464856:1:exon
subclass of: SO_0000010

30033999
type: Gene
SIO_000068: ncbigene

position:462016:1
position: 462016
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:464856:1
position: 464856
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:462016-464856:1:exon

AWJ20_2122
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CDC25
locus tag: AWJ20_2122
product: Ras family guanine nucleotide exchange factor CDC25
transcript id: XM_018879051.1
SIO_010081: AWJ20_2122
subclass of: SO_0000673
so part of: AWJ20_2122
location: <462016..>464856
location: region:462016-464856:1
so has part: feature:462016-464856:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:462016-464856:1:exon

AWJ20_2122
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CDC25
locus tag: AWJ20_2122
inference: similar to AA sequence:KEGG_Orthology:K03099
codon start: 1
product: Ras family guanine nucleotide exchange factor CDC25
translation: MDYTSISLETSLMTLQEFSDEDFEETWPEIIAKLEKSASKLESHVSPDEEYEFVMGFADLAGIIQKIALYVGVPPGAFPSSGNEFAGISLAFRRMINTLSRISISHSIGSMIRHQSVGSLEEPDQAADSDKLKSAIQQLVTYAKDLIFQTRSKIQEENSLNDSFEANETGEMKLPEKIEIPLSKFDVKYFVDGLWTNIVVNRSGQLVPQDSSIPGSLTLLEQKFASSRSSTSQEPTNRLRMPLETYNTSLAVDTEVISVLEMRIKTVKNILNQFVKLSNTASSTKSLDATQDRRKILGSSLQALINVSKVIVNIIESIDLTAFYACRASVAESHSSMTRLFAFLEAKQAIYDALAELEVVRNQNEAGDSNFIAALAEKFEKSKLEEIYFTYEQTNEQQIKEKVFKLDAVLASVVESAKNLSTELRSIVAVDSRLLDTTGTSSFPRELAAAAAAAAAVAVSSTAGGNSSNGAMSPRSTYSAKRKESAVDSFSIGSHSIREDGPWFLQLEHGDEIVYDKKGSSIRGGSQRALVEQLTLHSRLNSEFNVAMLLTFQSFMDATNLFEQLVERFLIQPPEGLTSEEFALWAEKKQRPTRLRVVNILKTWLENYWFEDDSEDLTSEARSSLFESMSKFAEQLKAQKFPGGASLYNIVEKRMNDKEPSFKRMIVTTTTQPPPPILPRNLKKFKLTEIDPVEMARQLSVREFKLLVVITSHECLLRGCGGLGKSSNSGGRKIGEFIRNSNCLTNWVAYAILRHSEAKRRASTIRYFIHVAEACRALNNFSSMTAIISALYSSTIHRMKKTWDYVSSKNTAKLENMNRLMNSSRNFNEYRDLLNLVPPPAVPFFGVYLTDLTFVEDGNPDYLDTEHKIVNFAKRQKTATIIENIRQFQIVPYNFEELADVQLFLDRGFEEAPPIEEQYDTSLNFEPREKPGTDKVAKLFEENGIL
SIO_010081: AWJ20_2122
subclass of: SO_0000673
so part of: AWJ20_2122
location: 462016..464856
location: region:462016-464856:1
so has part: feature:462016-464856:1:exon

XP_018737004.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:462016-464856:1:exon

AWJ20_2123
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2123
so part of: sequence
location: complement(<466522..>467007)
location: region:466522-467007:-1
so has part: feature:466522-467007:-1:exon
subclass of: SO_0000010

30034000
type: Gene
SIO_000068: ncbigene

position:466522:-1
position: 466522
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:467007:-1
position: 467007
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:466522-467007:-1:exon

AWJ20_2123
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2123
product: hypothetical protein
transcript id: XM_018879052.1
SIO_010081: AWJ20_2123
subclass of: SO_0000673
so part of: AWJ20_2123
location: complement(<466522..>467007)
location: region:466522-467007:-1
so has part: feature:466522-467007:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:466522-467007:-1:exon

AWJ20_2123
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2123
codon start: 1
product: hypothetical protein
translation: MPSTLVPCRSATVAADPMTPDRPISRAQAAFFDLKLEAVNMFAIIVLYPVAVIAAPFHLFYLQSVEWKDRRQNKKLLRSLPITVYNSHPDPVNNSLNLSWGCSENCNICLDDYVDGKSKLMTLPCGHQFHSTCAVRWIAQQMIAEKKNPAITCPVCKCDIR
SIO_010081: AWJ20_2123
subclass of: SO_0000673
so part of: AWJ20_2123
location: complement(466522..467007)
location: region:466522-467007:-1
so has part: feature:466522-467007:-1:exon

XP_018737005.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:466522-467007:-1:exon

AWJ20_2124
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CCS1
locus tag: AWJ20_2124
so part of: sequence
location: complement(<468365..>468910)
location: region:468365-468910:-1
so has part: feature:468365-468910:-1:exon
subclass of: SO_0000010

30034001
type: Gene
SIO_000068: ncbigene

position:468365:-1
position: 468365
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:468910:-1
position: 468910
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:468365-468910:-1:exon

AWJ20_2124
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CCS1
locus tag: AWJ20_2124
product: Ccs1p
transcript id: XM_018879053.1
SIO_010081: AWJ20_2124
subclass of: SO_0000673
so part of: AWJ20_2124
location: complement(<468365..>468910)
location: region:468365-468910:-1
so has part: feature:468365-468910:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:468365-468910:-1:exon

AWJ20_2124
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CCS1
locus tag: AWJ20_2124
inference: similar to AA sequence:KEGG_Orthology:K04569
note: Copper chaperone for superoxide dismutase Sod1p; involved in oxidative stress protection; Met-X-Cys-X2-Cys motif within the N-terminal portion is involved in insertion of copper into Sod1p under conditions of copper deprivation; required for regulation of yeast copper genes in response to DNA-damaging agents; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9295278]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 11500508]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 18977757]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0016532 - superoxide dismutase copper chaperone activity [Evidence IGI,IMP,ISS] [PMID 9295278]; GO_function: GO:0008270 - zinc ion binding [Evidence IBA]; GO_process: GO:0015680 - intracellular copper ion transport [Evidence IMP,ISS] [PMID 9295278]; GO_process: GO:0030001 - metal ion transport [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0019430 - removal of superoxide radicals [Evidence IBA]; GO_process: GO:0006801 - superoxide metabolic process [Evidence IEA]
codon start: 1
product: Ccs1p
translation: MQNIGKDAIVRGTGEPNSAAVCILESFEDEKNPVKGLARIVGVSPTRALFDITLNGLPKGKYYPSIRVSGDLSQGAVSTGPQLVELGEIDVSAQLSTSDSFLANQPKGFSGHAVFTKDVSISDIIGRGLTVSKSRTANYPDSLVGVIARSAGIWENLKSVCSCSGKTVWEERSDAISSGIH
SIO_010081: AWJ20_2124
subclass of: SO_0000673
so part of: AWJ20_2124
location: complement(468365..468910)
location: region:468365-468910:-1
so has part: feature:468365-468910:-1:exon

XP_018737006.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:468365-468910:-1:exon

AWJ20_2125
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: IMH1
locus tag: AWJ20_2125
so part of: sequence
location: <470307..>472679
location: region:470307-472679:1
so has part: feature:470307-472679:1:exon
subclass of: SO_0000010

30034002
type: Gene
SIO_000068: ncbigene

position:470307:1
position: 470307
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:472679:1
position: 472679
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:470307-472679:1:exon

AWJ20_2125
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: IMH1
locus tag: AWJ20_2125
product: Imh1p
transcript id: XM_018879054.1
SIO_010081: AWJ20_2125
subclass of: SO_0000673
so part of: AWJ20_2125
location: <470307..>472679
location: region:470307-472679:1
so has part: feature:470307-472679:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:470307-472679:1:exon

AWJ20_2125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: IMH1
locus tag: AWJ20_2125
note: Protein involved in vesicular transport; mediates transport between an endosomal compartment and the Golgi, contains a Golgi-localization (GRIP) domain that interacts with activated Arl1p-GTP to localize Imh1p to the Golgi; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 15077113]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9880327]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0043001 - Golgi to plasma membrane protein transport [Evidence IMP] [PMID 16926193]; GO_process: GO:0000042 - protein targeting to Golgi [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IMP] [PMID 9880327]
codon start: 1
product: Imh1p
translation: MQNAEIRRLTSENSKTIKEATDLKGTLDKAKAEIADLKSNLVKQRQLEKDAENFKTEIEALKSQGVSKDELLKQQTEKLAKLDKLEEELKSKDQELTKIKEESEKSANAVSADKEKELAILQEKLEKEVSALNEKEEELVKLKSEKEQATVALAKEKDDEINRLKEIHSKEISELSLKLKEVEESASAASAPPVGSDLADQISTPTSTPSKKKNKKKKKGGAMATEPPETENTSLPSSDGEISKLQAEIRSKEEHIQELNGMITAIGQDLVVAREELANRDNEVTGTKESALQASEELKALKEDMDRQLEEARNKLKEESAALEDTKSKLKEESATLEDTKSKLKEESAILEDVRLGLEKAEKLAATRLDELNRSKADYESQISKLKADHGNSTALIDKYKGEISTLTSVVADKEKHISELETKVKSLETSYSKLNAEHNSLKKQQGAEIESLQKTNAEARGKLQRELAAVKASKASFEKDHSKLLVEASEAKSKLSAAETEKATAISNLQLLQREVDELKQIADESSKRSDSLQEELSDLRKHLQDRTREAQTLTNLRNETEHSYQTKVKELEAKVRALTEQRDEYESDLLTMQSRKSRELDELRTQNGDLKRQLHMFEEEKNRYDRDLKDIRKMRDRVQEELTSAKEELASIRKELESSRSQLSAAQTRAVEFEKSASSLKRAAEESQEKNEVLQRNYRVLTGDLETMRKEIVDLKNKSRDTVHSRQSSIVSLSGQDNDQVRNERLYTKNFLLNYVDKKEQRSAMLGSLATFLELNDSERQRFATAFR
SIO_010081: AWJ20_2125
subclass of: SO_0000673
so part of: AWJ20_2125
location: 470307..472679
location: region:470307-472679:1
so has part: feature:470307-472679:1:exon

XP_018737007.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:470307-472679:1:exon

AWJ20_2126
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CDA2
locus tag: AWJ20_2126
so part of: sequence
location: complement(<472748..>473860)
location: region:472748-473860:-1
so has part: feature:472748-473860:-1:exon
subclass of: SO_0000010

30034003
type: Gene
SIO_000068: ncbigene

position:472748:-1
position: 472748
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:473860:-1
position: 473860
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:472748-473860:-1:exon

AWJ20_2126
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CDA2
locus tag: AWJ20_2126
product: chitin deacetylase CDA2
transcript id: XM_018879055.1
SIO_010081: AWJ20_2126
subclass of: SO_0000673
so part of: AWJ20_2126
location: complement(<472748..>473860)
location: region:472748-473860:-1
so has part: feature:472748-473860:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:472748-473860:-1:exon

AWJ20_2126
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CDA2
locus tag: AWJ20_2126
inference: similar to AA sequence:KEGG_Orthology:K01452
note: Chitin deacetylase; together with Cda1p involved in the biosynthesis ascospore wall component, chitosan; required for proper rigidity of the ascospore wall; GO_component: GO:0005631 - chitosan layer of spore wall [Evidence ISS] [PMID 8940152]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004099 - chitin deacetylase activity [Evidence IEA]; GO_function: GO:0004099 - chitin deacetylase activity [Evidence IDA,ISS] [PMID 8940152]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IDA,IMP] [PMID 8940152]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA,IEA]; GO_process: GO:0006032 - chitin catabolic process [Evidence IEA]; GO_process: GO:0000272 - polysaccharide catabolic process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]
codon start: 1
product: chitin deacetylase CDA2
translation: MKLYATALLVFSTVATAKSNDETKPINPLLLSSPRNIDHSAKYINLPISPGKLRENLQNHASGPQTYGTGSKPSHLDRTLADYTVPSRQEIGIGGGISGNNQGVKIYAQFKQPFPDWLQSITGLTKWPDENAPYIPLDDIDLSVVPKIPKRSLGDCSNVERSHCSFECYRCVAPDDIITCPVMSQTFDDGPSPSTPKLLDQLPIKTTFFTQGINVVRFPETVRLQHQEGHLLASHTWSHANLPGLSNEDIAAQIQWSIWAINATAGVVPRYFRPPYGAIDDRVRTITRQFGLVAVFWDKDTFDWRVNDRSKTENEVYQEVRQWQAETPGALILEHDSTIKTVNVGIEVSRLIHSKQMTVADCVNGPWYND
SIO_010081: AWJ20_2126
subclass of: SO_0000673
so part of: AWJ20_2126
location: complement(472748..473860)
location: region:472748-473860:-1
so has part: feature:472748-473860:-1:exon

XP_018737008.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:472748-473860:-1:exon

AWJ20_2127
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ARA2
locus tag: AWJ20_2127
so part of: sequence
location: <474181..>475200
location: region:474181-475200:1
so has part: feature:474181-475200:1:exon
subclass of: SO_0000010

30034004
type: Gene
SIO_000068: ncbigene

position:474181:1
position: 474181
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:475200:1
position: 475200
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:474181-475200:1:exon

AWJ20_2127
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ARA2
locus tag: AWJ20_2127
product: D-arabinose 1-dehydrogenase (NAD(P)(+)) ARA2
transcript id: XM_018879056.1
SIO_010081: AWJ20_2127
subclass of: SO_0000673
so part of: AWJ20_2127
location: <474181..>475200
location: region:474181-475200:1
so has part: feature:474181-475200:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:474181-475200:1:exon

AWJ20_2127
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ARA2
locus tag: AWJ20_2127
inference: similar to AA sequence:KEGG_Orthology:K00062
note: NAD-dependent arabinose dehydrogenase; involved in biosynthesis of dehydro-D-arabinono-1,4-lactone; similar to plant L-galactose dehydrogenase; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0047816 - D-arabinose 1-dehydrogenase (NAD) activity [Evidence IEA]; GO_function: GO:0045290 - D-arabinose 1-dehydrogenase [NAD(P)+] activity [Evidence IDA,IMP] [PMID 17097644]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0070485 - dehydro-D-arabinono-1,4-lactone biosynthetic process [Evidence IMP] [PMID 17097644]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]
codon start: 1
product: D-arabinose 1-dehydrogenase (NAD(P)(+)) ARA2
translation: MTQSEVIIKPITTNIPKSIEDLPDIVLGAGVFNYQYTDDPHGLSAENVLRKAFDLGIRALDTSAYYGPSEEIVGKALKSMASEYPRDTYLICTKAGRVAENNFDYSAASIRSSVLRSLERLNTTYLDVLYIHDVEFVETKQCLEAIDEAFALKKAGYIKNVGISGYPLDFLLYLATLAKNTLSHGSLDIILSYSNFCMQNTLLEDYVTKFKTEAGVRVVLNASPLSMSLLRAVPPHPFHPASLELRKAVSEASVYTSQHGVDISDLAVRFVYTHWTHGPTVFGLQTVREVETAVQQYWQAKTAAQSKEDEVLLKGVREILGSTLNQTWPSGIEHPDMTA
SIO_010081: AWJ20_2127
subclass of: SO_0000673
so part of: AWJ20_2127
location: 474181..475200
location: region:474181-475200:1
so has part: feature:474181-475200:1:exon

XP_018737009.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:474181-475200:1:exon

AWJ20_2128
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2128
so part of: sequence
location: complement(<475553..>476314)
location: region:475553-476314:-1
so has part: feature:475553-476314:-1:exon
subclass of: SO_0000010

30034005
type: Gene
SIO_000068: ncbigene

position:475553:-1
position: 475553
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:476314:-1
position: 476314
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:475553-476314:-1:exon

AWJ20_2128
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2128
product: hypothetical protein
transcript id: XM_018879057.1
SIO_010081: AWJ20_2128
subclass of: SO_0000673
so part of: AWJ20_2128
location: complement(<475553..>476314)
location: region:475553-476314:-1
so has part: feature:475553-476314:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:475553-476314:-1:exon

AWJ20_2128
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2128
codon start: 1
product: hypothetical protein
translation: MKNSTDFQATSPRSQPIFHIENIPASASISSTSLSPTSLAATNSGPPPIATPGRHSRQSSSSSIYSNSSFQTPAPPTPILGHEPRGLESRGRQASLNNRSSVSGTSSGGGISTTLAGQGPTKFTGPMSSVEIYDVLEKEQEAIVNKLQREINHLKTERSRSRSQSTSSSSSMTRNPSIRSIYSVSDAEEQYPGSSAPAGSVATAAATHRRGSRPSFGSVIDDSSVINSLRKENEVLKKKIAELSIKCKCSQVF
SIO_010081: AWJ20_2128
subclass of: SO_0000673
so part of: AWJ20_2128
location: complement(475553..476314)
location: region:475553-476314:-1
so has part: feature:475553-476314:-1:exon

XP_018737010.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:475553-476314:-1:exon

AWJ20_2129
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2129
so part of: sequence
location: complement(<477351..>477443)
location: region:477351-477443:-1
so has part: feature:477351-477443:-1:exon
subclass of: SO_0000663

30034006
type: Gene
SIO_000068: ncbigene

position:477351:-1
position: 477351
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:477443:-1
position: 477443
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:477351-477443:-1:exon

AWJ20_2129
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_2129
product: tRNA-Pro
SIO_010081: AWJ20_2129
subclass of: SO_0000673
so part of: AWJ20_2129
location: complement(<477351..>477443)
location: region:477351-477443:-1
so has part: feature:477351-477443:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:477351-477443:-1:exon

AWJ20_2130
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2130
so part of: sequence
location: <477651..>477722
location: region:477651-477722:1
so has part: feature:477651-477722:1:exon
subclass of: SO_0000663

30034008
type: Gene
SIO_000068: ncbigene

position:477651:1
position: 477651
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:477722:1
position: 477722
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:477651-477722:1:exon

AWJ20_2130
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_2130
product: tRNA-Glu
SIO_010081: AWJ20_2130
subclass of: SO_0000673
so part of: AWJ20_2130
location: <477651..>477722
location: region:477651-477722:1
so has part: feature:477651-477722:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:477651-477722:1:exon

AWJ20_2131
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SRF1
locus tag: AWJ20_2131
so part of: sequence
location: <479962..>481737
location: region:479962-481737:1
so has part: feature:479962-481737:1:exon
subclass of: SO_0000010

30034009
type: Gene
SIO_000068: ncbigene

position:479962:1
position: 479962
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:481737:1
position: 481737
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:479962-481737:1:exon

AWJ20_2131
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SRF1
locus tag: AWJ20_2131
product: Srf1p
transcript id: XM_018879059.1
SIO_010081: AWJ20_2131
subclass of: SO_0000673
so part of: AWJ20_2131
location: <479962..>481737
location: region:479962-481737:1
so has part: feature:479962-481737:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:479962-481737:1:exon

AWJ20_2131
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SRF1
locus tag: AWJ20_2131
note: Regulator of phospholipase D (Spo14p); interacts with Spo14p and regulates its catalytic activity; capable of buffering the toxicity of C16:0 platelet activating factor, a lipid that accumulates intraneuronally in Alzheimer's patients; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0043085 - positive regulation of catalytic activity [Evidence IMP] [PMID 21347278]
codon start: 1
product: Srf1p
translation: MASGGGGGDLGLQGIQEANGTSSGSGSGSGSVSWNPHPTTSQGGGNRSTPITPQKTRSHRSGSAASKVTTPKNPPLSRQETPTKSTASSGSYNVGLVAGTGGYRLEPRPYPVWAAMSMISKDDKTNESDPPTARSSSGTSKQAYGLGINRGALDRPVFRYPKLRSETKDKDPVQLVHADDIKQQRNISSSSVNNNEKDEPNDFSQPNAKSTNQQEQAVSDTIPGTGGPAFFDYSPSAPDPNADTELNEKSKMDVSPGQAFDDRDFSEAQPVPYRRQSISYSERDDYKFPARATPSFVIPNNISDNMTRGTSKWQELLAMTARHEFYESQGIIDEVALNRQGDLDRLWKAHVEEERQLRLEKLRRNRISRLGRLRHFFRKQREPDSTHPGNSGRDTEPLHISSARYLVSHESRQKYKPRLRKIFLNNPFIPLTLRATIFILSIIALAVSSSIYKRSHDAKPNRINQQPSTIMAIVVQSTALVYLVYITYDEYSGKPLGLRDARAKMRLIMLDLLFIIFSAANLSLTFNTLYDRTWVCQDFSFSSSSVTIFLPYISKICDLQKVLASFLFMVLVMWILTFTVSIFRLVERVAQ
SIO_010081: AWJ20_2131
subclass of: SO_0000673
so part of: AWJ20_2131
location: 479962..481737
location: region:479962-481737:1
so has part: feature:479962-481737:1:exon

XP_018737011.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:479962-481737:1:exon

AWJ20_2132
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CDC53
locus tag: AWJ20_2132
so part of: sequence
location: <483005..>484786
location: region:483005-484786:1
so has part: feature:483005-484786:1:exon
subclass of: SO_0000010

30034010
type: Gene
SIO_000068: ncbigene

position:483005:1
position: 483005
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:484786:1
position: 484786
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:483005-484786:1:exon

AWJ20_2132
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CDC53
locus tag: AWJ20_2132
product: cullin CDC53
transcript id: XM_018879060.1
SIO_010081: AWJ20_2132
subclass of: SO_0000673
so part of: AWJ20_2132
location: <483005..>484786
location: region:483005-484786:1
so has part: feature:483005-484786:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:483005-484786:1:exon

AWJ20_2132
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CDC53
locus tag: AWJ20_2132
inference: similar to AA sequence:KEGG_Orthology:K03347
note: Cullin; structural protein of SCF complexes (which also contain Skp1p, Cdc34p, Hrt1p and an F-box protein) involved in ubiquitination; SCF promotes the G1-S transition by targeting G1 cyclins and the Cln-CDK inhibitor Sic1p for degradation; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA] [PMID 19882662]; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA,IPI] [PMID 9346238]; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA,IPI] [PMID 9346239]; GO_component: GO:0031461 - cullin-RING ubiquitin ligase complex [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IPI] [PMID 16421250]; GO_function: GO:0030674 - protein binding, bridging [Evidence IMP,IPI] [PMID 9499404]; GO_function: GO:0061630 - ubiquitin protein ligase activity [Evidence IDA] [PMID 9346238]; GO_function: GO:0031625 - ubiquitin protein ligase binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 10385629]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 9346239]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 8943317]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IGI] [PMID 7954792]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IGI] [PMID 9736614]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346238]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346239]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence I…
codon start: 1
product: cullin CDC53
translation: MIERQRNGEDIPSSSLKQIILSFVSLGLDEQNTKRINLTVYQDFFETAFLENTRTYYTNESKEFLAHNSVVEYVKKANNRLNEEYQRVKMYLHQYTEERLMSTCDQVLISDHAAAIQNEFQVLLGDDRQEDFHTMYKLLSRVEGGLVPIQQALQAHVEKQGMEAVQKLQSQTTGGPVDPKAYVDSLLVVHMKYSALVSESFENNKDLVRALDNGCRAFINNNIIAKPTQQLDKDSKTPELLAKYADSLLKKSSKNTGEADIDASLNGIMRIFQYLDEKDAFEKFYSRLLSKRLVNNSSTSEDAETSMVAKLKEACGYEYTNKLQRMFQDMKTSADLQNQFKNTLEKKDVDFTAYVLAQSIWPLPDLKPTFELPKQLVGTFDRFQNFYGTKHSGRKLMWLWNFCKGEIRANYPKTSKTGYTFQVSVFQIAILLPFNDADTLSFQQLKEITGLSKEYLANSLHFLLKAKVLLQNPENTEISDESNSFSYNPNFKSKKVRINLNLPLKTEQKQDTEDTQKKIQDDRHLFLQAIIVRIMKARKELTHVNLVQETLEQSRRFKPRVPDIKKTIDTLIEREYLQRVVKANNTTSYQYLA
SIO_010081: AWJ20_2132
subclass of: SO_0000673
so part of: AWJ20_2132
location: 483005..484786
location: region:483005-484786:1
so has part: feature:483005-484786:1:exon

XP_018737012.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:483005-484786:1:exon

AWJ20_2133
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SPO71
locus tag: AWJ20_2133
so part of: sequence
location: complement(<484899..>488738)
location: region:484899-488738:-1
so has part: feature:484899-488738:-1:exon
subclass of: SO_0000010

30034011
type: Gene
SIO_000068: ncbigene

position:484899:-1
position: 484899
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:488738:-1
position: 488738
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:484899-488738:-1:exon

AWJ20_2133
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SPO71
locus tag: AWJ20_2133
product: Spo71p
transcript id: XM_018879061.1
SIO_010081: AWJ20_2133
subclass of: SO_0000673
so part of: AWJ20_2133
location: complement(<484899..>488738)
location: region:484899-488738:-1
so has part: feature:484899-488738:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:484899-488738:-1:exon

AWJ20_2133
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SPO71
locus tag: AWJ20_2133
note: Meiosis-specific protein required for spore wall formation; localizes to prospore membrane (PSM) and is required for PSM closure during sporulation; mediates PSM size; interacts with Spo1p and Vps13p and recruits Vps13p to the PSM during sporulation; mutants exhibit reduction in PSM PtdIns-phosphate pools; dispensable for both nuclear divisions during meiosis; contains two PH domains; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24036347]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IMP] [PMID 22611022]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IEP,IMP] [PMID 9784122]; GO_process: GO:1902657 - protein localization to prospore membrane [Evidence IDA] [PMID 24036347]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]
codon start: 1
product: Spo71p
translation: MTSSLSATLEEMDPEADHKDPNIIRKSSYTALRLYNEVPSQIDQETRIIFVGPVPMEWLVANKKTYGSWGKMKSLFPKVYSRLWTDQGSQAAANDDVRKITNAAVAAAANRMAAEQQNGNPVEGVATSSGSIPNTGGPLVAGPEGVIRAIDDLVIAPRISVDSTDPMTSFDAVSDDDAWISTDDRPDLVPNHSSDLVPQRYVAADDLVSLNLDSSSIAEHVLENEDPEPEEEPGENEESSYPHADRTDDLMLSRYLTTEGATSTLRTLPAASDEYPYNSGSQNSSQQSLSRGSHFYSNTRSSRNENVSHDGDSPLASYGNGPTGIISDDDSRMSPSPRSTSHLLGDTSRPPSQLDLSSSHSKTFQPALVYKTTPHTNSASEPTPLFTATDSSVSTMGSMQSYFTARESVVSTGRSDSESSRNNSYFPPQDDYIASNAADSVQSNGSTDDSSTSTVKPNKPHEHSLSGTVPLAAETSTATAVNQIVSPSAKSYLADILERDVAALKKKQTSEENKNAQQKQAKKATSVRAPTSKLSNTIQKAKKKPANAGRRVKQKYQKHKHSFMVSTDKLLKRKRVGEVVMIEKLLVLVKAAPEDRRIPSDFNEMEQIDTRLVQRWREYVVVARKSDSSESPIDLQFYKSRQISKIETHDQQHKRKSDKPDFSVGVGSHCEVNLYSSLDKSIVLWNRTSLGVEPSKKKDSMIYILRARSDASALNWLSFLASIVGICAESLITVKVPDLGVTIDVEIPFQDIETIRRFEDRSQLVSLKHMMKHSSHPSWMGTYIVEKCLDAMYQVEPIRKQLDQNWRGIVKAGLVWRRYDRLEWMFDLRGAQMQSSWAMMKTHHELELRPKVPFSLPIMIQGNPTPLAEPFPIEGFVTRLTTWRGEVRKQKLLNRSYFHTHDNLLFYALPIRALPPYVGSDTKDIPLICEIAPYKTDSHGRIEWLNHIKNVEEFDQYDLIAQFEMKRRIASISRSDGFVDLIELRDIRPEDDDKVVLVFKSGTILRFQVHDLETRNMWLKQLHDLMIYWKYRRRERMIRTNAIRQQNLDILHIDEDAEAFVGEAAAKWETDRGVADPLTYNIAGIACSRSLYMNGILFQKPTKFSTFRKYYVVLTLTDLILYLPSPSSVHWTEGGYCLTERLKSTYTRVNNYRVQSVSLSECYVYSGPVTSSDLLNRENTFDKENPGRHALPRAYADGWKSAEEESLRCFVLWFGKKSYAPTSRKDKKLSFKTVNRLGAGGTSMVFMARSRHDRDLWVTALNTVMSRLAVDSHEDIVVT
SIO_010081: AWJ20_2133
subclass of: SO_0000673
so part of: AWJ20_2133
location: complement(484899..488738)
location: region:484899-488738:-1
so has part: feature:484899-488738:-1:exon

XP_018737013.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:484899-488738:-1:exon

AWJ20_2134
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ATP5
locus tag: AWJ20_2134
so part of: sequence
location: complement(<489511..>490152)
location: region:489511-490152:-1
so has part: feature:489511-490152:-1:exon
subclass of: SO_0000010

30034012
type: Gene
SIO_000068: ncbigene

position:489511:-1
position: 489511
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:490152:-1
position: 490152
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:489511-490152:-1:exon

AWJ20_2134
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ATP5
locus tag: AWJ20_2134
product: F1F0 ATP synthase subunit 5
transcript id: XM_018879062.1
SIO_010081: AWJ20_2134
subclass of: SO_0000673
so part of: AWJ20_2134
location: complement(<489511..>490152)
location: region:489511-490152:-1
so has part: feature:489511-490152:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:489511-490152:-1:exon

AWJ20_2134
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ATP5
locus tag: AWJ20_2134
inference: similar to AA sequence:KEGG_Orthology:K02137
note: Subunit 5 of the stator stalk of mitochondrial F1F0 ATP synthase; F1F0 ATP synthase is a large, evolutionarily conserved enzyme complex required for ATP synthesis; homologous to bovine subunit OSCP (oligomycin sensitivity-conferring protein); phosphorylated; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005753 - mitochondrial proton-transporting ATP synthase complex [Evidence IDA] [PMID 10066811]; GO_component: GO:0000274 - mitochondrial proton-transporting ATP synthase, stator stalk [Evidence IMP,ISS] [PMID 2146269]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IDA] [PMID 20691145]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IMP] [PMID 7866306]; GO_process: GO:0006754 - ATP biosynthetic process [Evidence IEA]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IEA]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IMP] [PMID 15254373]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IDA] [PMID 20691145]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IMP,ISS] [PMID 2146269]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: F1F0 ATP synthase subunit 5
translation: MFVRALRQPMALRAIARTYATKASTAPPVQLFGIDGSYASALYTASAKDSTIEATEKGLTSLKSLISEDAKLATIIANPALSASDKKTVVEAISQSAGLDKTVSNFLSVLADNNRLSLLPEVITKFEVLSNAHQGFVDATVTSASPLDDKTLGRLKAAISQSEFVGEGKKLRITNDVKSEILGGLVVEIGDRTVDLSVSAKIARLNKLLTDSV
SIO_010081: AWJ20_2134
subclass of: SO_0000673
so part of: AWJ20_2134
location: complement(489511..490152)
location: region:489511-490152:-1
so has part: feature:489511-490152:-1:exon

XP_018737014.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:489511-490152:-1:exon

AWJ20_2135
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RML2
locus tag: AWJ20_2135
so part of: sequence
location: <490818..>492041
location: region:490818-492041:1
so has part: feature:490818-492041:1:exon
subclass of: SO_0000010

30034013
type: Gene
SIO_000068: ncbigene

position:490818:1
position: 490818
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:492041:1
position: 492041
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:490818-492041:1:exon

AWJ20_2135
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RML2
locus tag: AWJ20_2135
product: mitochondrial 54S ribosomal protein RML2
transcript id: XM_018879063.1
SIO_010081: AWJ20_2135
subclass of: SO_0000673
so part of: AWJ20_2135
location: <490818..>492041
location: region:490818-492041:1
so has part: feature:490818-492041:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:490818-492041:1:exon

AWJ20_2135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RML2
locus tag: AWJ20_2135
note: Mitochondrial ribosomal protein of the large subunit (L2); has similarity to E. coli L2 ribosomal protein; mutant allele (fat21) causes inability to utilize oleate, and induce oleic acid oxidation; may interfere with activity of the Adr1p transcription factor; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0015934 - large ribosomal subunit [Evidence IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9445368]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9445368]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 9079633]; GO_process: GO:0006412 - translation [Evidence IEA]
codon start: 1
product: mitochondrial 54S ribosomal protein RML2
translation: MSLRLFGLARSTISVASRHRTATGIRFSSTTPSPEENSDPVAVDQSAGSKRKSTRSEFADSAQSNQLQEELNKLEIVPFGQRSNLTELEEQDNEMKRQLKLFKTAVKMKSPKPISPSLRWYKWPIYPYLHKGKPVKELTVPRKKHSGRNHHGLITVRHQGGGAKRRIRLIDFFRLDGGVHEVVRIEYDPNRSSHIALVKNEETSALSYILACVGLRAGDKVESFRDGIPQRIIDKMGGENDPGILATHIAKKGNCMPLSMIPLGSIIHNIGVSKIGPGKLCRAAGTYGRLHEKLPEKKKAVIRLQSGEYRYVALDACATLGMVSNPDHQHRSFGKAGRSRHFGIRPRVRGVAMNKVDHPLGGGRGKSKGNKVPQSPWGTPSKSGYKTRRGKNINHNKIRDRPRGKNK
SIO_010081: AWJ20_2135
subclass of: SO_0000673
so part of: AWJ20_2135
location: 490818..492041
location: region:490818-492041:1
so has part: feature:490818-492041:1:exon

XP_018737015.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:490818-492041:1:exon

AWJ20_2136
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ASG1
locus tag: AWJ20_2136
so part of: sequence
location: complement(<492244..>494664)
location: region:492244-494664:-1
so has part: feature:492244-494664:-1:exon
subclass of: SO_0000010

30034014
type: Gene
SIO_000068: ncbigene

position:492244:-1
position: 492244
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:494664:-1
position: 494664
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:492244-494664:-1:exon

AWJ20_2136
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ASG1
locus tag: AWJ20_2136
product: Asg1p
transcript id: XM_018879064.1
SIO_010081: AWJ20_2136
subclass of: SO_0000673
so part of: AWJ20_2136
location: complement(<492244..>494664)
location: region:492244-494664:-1
so has part: feature:492244-494664:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:492244-494664:-1:exon

AWJ20_2136
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ASG1
locus tag: AWJ20_2136
note: Zinc cluster protein proposed to be a transcriptional regulator; regulator involved in the stress response; null mutants have a respiratory deficiency, calcofluor white sensitivity and slightly increased cycloheximide resistance; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]
codon start: 1
product: Asg1p
translation: MPCTNCAAFGCECRIPEVRMKKGQRASKKQKTEDGEQAAPGISGGIAAGLKAQAAFARGKLTPNSKVSARSAITEELREAGDGKSGFTRSILSGKDNWKQFLDQNLRQPGKMSYLGSTSHVNLIFDNIPDSEAFYFAAAAAAGASNSRVQQMDREEIEILKIKGAFLLPAQELCDDLVESYFEKIHPLIPIINRTQFMRQYNDPANPPSLLLRQAVLVAGSRVCQNPALMDESGSSKLATATFYKRAKALFDANYETDRIAIVQSTLLMAWFLAGPDYVTDNVYFWTRVSLTIAQSIGLHRSVEKSNVPDIEKRMCKRIWWSLFARDRSTACAMGRPVMINLDDSDVPMIELEDFDESEPDKPSPYPINREHALYFIAHVKLSEIMGLTIREQYSIGAESSRRQNKVPNVNQCDMAMAAWMNNLPPELKYSLKDKRSHDFFKALLHSQYYTVLCLVHRSNILYRRTPNANGSKIPSYPSWGIAFQAAHMIVRIAENLKSFNELPFCPAFMVYSLFSAMIILIYQMESPSKSVVESAKRGVESCHGILEILGQVWDTADQICKMARYLNSDPMLRQKIIFSAKRLAAATSSEEGTENPSAVNSPGPSGVDSGLPTADSSRPGSAPLKRSYEEEYDPNKIPEVTSPNVSYVRGNQPQPQPQAQRPAHIPGMTPLQPNYQATHLGQAVPPNMDFPSELFLVTNTPPNPVFFENFQPSQLFPESVRSNSVGQQSSPEMTSDRGANMLPDALFASHESFGDVFYENFNSPPEDVGTVPNTLNLGDWYKFLMSTSTASHFPDLRNVPVKSDV
SIO_010081: AWJ20_2136
subclass of: SO_0000673
so part of: AWJ20_2136
location: complement(492244..494664)
location: region:492244-494664:-1
so has part: feature:492244-494664:-1:exon

XP_018737016.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:492244-494664:-1:exon

AWJ20_2137
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2137
so part of: sequence
location: <499144..>500355
location: region:499144-500355:1
so has part: feature:499144-500355:1:exon
subclass of: SO_0000010

30034015
type: Gene
SIO_000068: ncbigene

position:499144:1
position: 499144
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:500355:1
position: 500355
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:499144-500355:1:exon

AWJ20_2137
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2137
product: putative cysteine synthase
transcript id: XM_018879065.1
SIO_010081: AWJ20_2137
subclass of: SO_0000673
so part of: AWJ20_2137
location: <499144..>500355
location: region:499144-500355:1
so has part: feature:499144-500355:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:499144-500355:1:exon

AWJ20_2137
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2137
inference: similar to AA sequence:KEGG_Orthology:K01738
note: Putative cysteine synthase; localized to the mitochondrial outer membrane; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004124 - cysteine synthase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0019344 - cysteine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006535 - cysteine biosynthetic process from serine [Evidence IEA]
codon start: 1
product: putative cysteine synthase
translation: MAWDQTRLLAVATLSTALVLGSLWYNDVVTVEIKWPVRGKKGISKMKTGFVAPKGIEQLIGNTPMVRINSLSDATGCEIYGKMEVQNPGGSAKDRVALAIIENAEAQNLITPHSGDMIFEGTSGSTGISLAMLCRAKGYIAHIVVPDDTSQEKVDLLENLGAVVHKVRPAGIADPKQYVNYAKAAAMEINNNPENKHRALFADQFENEANWKTHYDHTGPEIYSQISEVLPKGKTLDAFITGAGTGGTISGVSKYLKERLPHVKVVISDPPGSGFYNKVKYGVMFDLKEKEGTRRRHQVDTVVEGIGLNRITRNFSAGSDYIDDAIRVKDEESVKMAKYLVDNDGLFVGSSSAVNCVATYKYAKQLGPGHTIVTILCDSGSRHLSKFWKLAKESASIKDLSQL
SIO_010081: AWJ20_2137
subclass of: SO_0000673
so part of: AWJ20_2137
location: 499144..500355
location: region:499144-500355:1
so has part: feature:499144-500355:1:exon

XP_018737017.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:499144-500355:1:exon

AWJ20_2138
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2138
so part of: sequence
location: <502421..>504133
location: region:502421-504133:1
so has part: feature:502421-504133:1:exon
subclass of: SO_0000010

30034016
type: Gene
SIO_000068: ncbigene

position:502421:1
position: 502421
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:504133:1
position: 504133
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:502421-504133:1:exon

AWJ20_2138
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2138
product: hypothetical protein
transcript id: XM_018879066.1
SIO_010081: AWJ20_2138
subclass of: SO_0000673
so part of: AWJ20_2138
location: <502421..>504133
location: region:502421-504133:1
so has part: feature:502421-504133:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:502421-504133:1:exon

AWJ20_2138
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2138
codon start: 1
product: hypothetical protein
translation: MSRSRFGTGRPFSSPPVNGKTRSTPAPAASGSAVFDFYPMTPDEQLRTFFIGNLPKGIPDDRVIAFLELISGFQKFVRVTNASGKPLNFGFVRFATPPGTKVALDVLPDVEYTDNDGARSKLKLSVESNTLEWLSVKFPHITPEVHQGSSKRDLVTKVNFVISKWQQASRESKNDENPEDSIDEGDLIEFLNQSIKGSQSQEFASSVSPAMADVLRKEIKAFREQALRLEKARILETEAYERKKQQELEEKSAKLLQGSLESKATNGDSIITSSELGPLMKEFEEYDLSEEELPLVDDEGNNEQRDLKLETKQLERSREDRERLFRKRQERWVNRELAHLEAVKREKERESNMEERLKTAQENALREYASFSDYDPQSMQKYDYYSDHAHWSKERNSYRRREIERDNNDIEDERKENEALPDTAIRTTAVNKKISLSLSTAKDRKQVEKPVQPLKDNEVNASEIIAQLKNDIENKENIFDWDVQWDSLTEDILSNTLRPLVENQILEYLGIQEEDLVNFVLDHLRSHKPAGELVSELEMTLDEDAPVFVRTLWKQLILEIEMEKRLKPTN
SIO_010081: AWJ20_2138
subclass of: SO_0000673
so part of: AWJ20_2138
location: 502421..504133
location: region:502421-504133:1
so has part: feature:502421-504133:1:exon

XP_018737018.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:502421-504133:1:exon

AWJ20_2139
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SYF1
locus tag: AWJ20_2139
so part of: sequence
location: complement(<504214..>506610)
location: region:504214-506610:-1
so has part: feature:504214-506610:-1:exon
subclass of: SO_0000010

30034017
type: Gene
SIO_000068: ncbigene

position:504214:-1
position: 504214
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:506610:-1
position: 506610
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:504214-506610:-1:exon

AWJ20_2139
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SYF1
locus tag: AWJ20_2139
product: Syf1p
transcript id: XM_018879067.1
SIO_010081: AWJ20_2139
subclass of: SO_0000673
so part of: AWJ20_2139
location: complement(<504214..>506610)
location: region:504214-506610:-1
so has part: feature:504214-506610:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:504214-506610:-1:exon

AWJ20_2139
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SYF1
locus tag: AWJ20_2139
inference: similar to AA sequence:KEGG_Orthology:K12867
note: Member of the NineTeen Complex (NTC); that contains Prp19p and stabilizes U6 snRNA in catalytic forms of the spliceosome containing U2, U5, and U6 snRNAs; null mutant has splicing defect and arrests in G2/M; relocalizes to the cytosol in response to hypoxia; homologs in human and C. elegans; GO_component: GO:0000974 - Prp19 complex [Evidence IDA] [PMID 11842115]; GO_component: GO:0071006 - U2-type catalytic step 1 spliceosome [Evidence IDA] [PMID 11105756]; GO_component: GO:0071006 - U2-type catalytic step 1 spliceosome [Evidence IDA] [PMID 11842115]; GO_component: GO:0071007 - U2-type catalytic step 2 spliceosome [Evidence IDA] [PMID 11105756]; GO_component: GO:0071008 - U2-type post-mRNA release spliceosomal complex [Evidence IDA] [PMID 11105756]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 11105756]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0000384 - first spliceosomal transesterification activity [Evidence IC] [PMID 11105756]; GO_function: GO:0000384 - first spliceosomal transesterification activity [Evidence IC] [PMID 11842115]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IC] [PMID 11105756]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000349 - generation of catalytic spliceosome for first transesterification step [Evidence IDA] [PMID 19617314]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]
codon start: 1
product: Syf1p
translation: MSTELSLIQEDDILYEQEILKQPGELGPWLRYLEFTADAPISKRIFVFERACDLFKRSYKLWKMYLDIRVDYVARSHAWILSQQGLNEFSREQLKSEIEKVDRLYVKALVLLNKMPRLWQDYLEYLLRWKPHSITHIRHTFDNALRALPLSQHHRIWPLYINFANRHAHISSATAKNIWLRYILFFPDETENCIEQLIDLEYYEQASQLLTKLLNNPNYVSVKGKSRHQLWEELADILVVPHDNWKPDSFYVERVIKSGIKRYPDQKGKLCVQLATYWINNGNFEKARDVFEQGLEDVKTVRDFSQIFDSYCEFEESLIAKLMDEEEQGDLDRLMESFEQLMDRRPFMINSVLLEQNPNNVVEWEKRAGLWGSSMDQVVQTYEKAIETIVPKKASGKLYQLWTNYAKLYEKAGDLSTARIIFDKATKVPYKSVNELCDLWIEWAEMELRSENLDGAIKIMETATKGPKNSKVDYFDESLSPQERLHKSMKLWSFYVDLVESIGTLEEVKPIYDRIFELKIGTTLTIVNYANLLEENNYFEEAFKVYERGIEMFSYPISFEIWNIYLQKAIKRKLGIERLRDLFEQALEDCPSKLCKPLYLLYGKLEEERGLVSNAIKIYERATKAVDNKDKLETYRYYIARVAENFGLPGTRPIFQTAIDNLNDHDANIIGQEFIKIEEKLGEIDRVRVLYGFLSQFNDPRTNEEFWSKWDQFEVMHGSEDTYKEMLRIKRSVIAQFNTDANYLAAKVSDNNSMSRLDKQTASPIGFVASETLQPSKSEAIDTNDVENPDAIDIEIED
SIO_010081: AWJ20_2139
subclass of: SO_0000673
so part of: AWJ20_2139
location: complement(504214..506610)
location: region:504214-506610:-1
so has part: feature:504214-506610:-1:exon

XP_018737019.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:504214-506610:-1:exon

AWJ20_2140
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: APE1
locus tag: AWJ20_2140
so part of: sequence
location: <507240..>508622
location: region:507240-508622:1
so has part: feature:507240-508622:1:exon
subclass of: SO_0000010

30034019
type: Gene
SIO_000068: ncbigene

position:507240:1
position: 507240
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:508622:1
position: 508622
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:507240-508622:1:exon

AWJ20_2140
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: APE1
locus tag: AWJ20_2140
product: Ape1p
transcript id: XM_018879069.1
SIO_010081: AWJ20_2140
subclass of: SO_0000673
so part of: AWJ20_2140
location: <507240..>508622
location: region:507240-508622:1
so has part: feature:507240-508622:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:507240-508622:1:exon

AWJ20_2140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: APE1
locus tag: AWJ20_2140
inference: similar to AA sequence:KEGG_Orthology:K01268
note: Vacuolar aminopeptidase yscI; zinc metalloproteinase that belongs to the peptidase family M18; often used as a marker protein in studies of autophagy and cytosol to vacuole targeting (CVT) pathway; protein increases in abundance and relative distribution to cytoplasmic foci increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 1400574]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0070006 - metalloaminopeptidase activity [Evidence IDA] [PMID 3882418]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence ISS] [PMID 2651436]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence ISS] [PMID 2689224]
codon start: 1
product: Ape1p
translation: MGNNYSEAFIKAIYENPTVYHWCNYTSEFLTARGFQYLPERENWDGKIKRGGSYYTTRNGSSIVAFKIGSKWKLGDNGVGVIGCHIDALTAKIKPISKKAFKQGYRQLGVAPYSGGMSSVWWDRDLSIGGRVIVKSQDGSFSTKLAHVEHPIARIPTLAEHFGKPSEGPFNKETQMTPIIGHETTDEDNATDEEKKSPLYGRHDIKLLRAIAQNVGVSVSELYQLELELFDSQPGALGGLDREFMFCPRLDDKLCSFGAIQALVETSAPSDAINCVALFDNEEIGSLLRQGAKGGLFQHAIQRVFQQLGDFDDDYLRQTFANSFFISSDVTHAVNPNFSDSYLENHKPKLNTGLVVKLDPNGHTTSDGVSTAFIEEVARRTGNKLQYFHIRNDGVSGGTIGPMFSSATGIRSVDAGIPQLSMHSIRATTGSRDLELGVKMYSGFFNTWTSVDADFRKGDI
SIO_010081: AWJ20_2140
subclass of: SO_0000673
so part of: AWJ20_2140
location: 507240..508622
location: region:507240-508622:1
so has part: feature:507240-508622:1:exon

XP_018737020.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:507240-508622:1:exon

AWJ20_2141
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: THP1
locus tag: AWJ20_2141
so part of: sequence
location: complement(<508767..>510092)
location: region:508767-510092:-1
so has part: feature:508767-510092:-1:exon
subclass of: SO_0000010

30034020
type: Gene
SIO_000068: ncbigene

position:508767:-1
position: 508767
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:510092:-1
position: 510092
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:508767-510092:-1:exon

AWJ20_2141
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: THP1
locus tag: AWJ20_2141
product: Thp1p
transcript id: XM_018879070.1
SIO_010081: AWJ20_2141
subclass of: SO_0000673
so part of: AWJ20_2141
location: complement(<508767..>510092)
location: region:508767-510092:-1
so has part: feature:508767-510092:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:508767-510092:-1:exon

AWJ20_2141
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: THP1
locus tag: AWJ20_2141
note: Nuclear pore-associated protein; component of TREX-2 complex (Sac3p-Thp1p-Sus1p-Cdc31p) involved in transcription elongation and mRNA export from the nucleus; involved in post-transcriptional tethering of active genes to the nuclear periphery and to non-nascent mRNP; contains a PAM domain implicated in protein-protein binding; GO_component: GO:0005635 - nuclear envelope [Evidence IEA]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 12206772]; GO_component: GO:0005643 - nuclear pore [Evidence IDA,IGI] [PMID 12411502]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11139493]; GO_component: GO:0070390 - transcription export complex 2 [Evidence IDA] [PMID 15311284]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 12702719]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 12702719]; GO_process: GO:0000282 - cellular bud site selection [Evidence IMP] [PMID 11452010]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IMP] [PMID 18614048]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 12411502]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0071033 - nuclear retention of pre-mRNA at the site of transcription [Evidence IMP] [PMID 18003937]; GO_process: GO:0000973 - posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 18003937]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 11139493]; GO_process: GO:0006283 - transcription-coupled nucleotide-excision repair [Evidence IMP] [PMID 17537816]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Thp1p
translation: MSVDLWLTRVKEISLIETPVKESSSLLGELFSVDIQNPQVSSLQNDILDNGININQKVDAVDIYDGDWPGFVELTKSYLLFCRDVDPSNMVESFYSYGQFLSDLQTAFSNVRGAILEETVYITTKVVVPQALSLDSQDSQFEMIRTSFLASVLLKIFNSIRGEKSVGEPLTKKTVIIFVATVLCRLYFKLDQPANCASVFSNIHTANIRFSLYSLAQRVEYRYWLGRFYLNKNQLSHSYNHLLWSFKNCHSSSPNKRLILLYLLAPAILLGKIPRYELLQAYNLDSIYWPLIHSIKRANYQQFMTHLESNEAFFYDHRILVLLQSRSVIILYRMILWRLVITSRQLANNDEKAASLVSFPNLQIAVRLSMGSFFPQSAVTDDYQFIESIAVSLISQGFVKANIYPRMKLIRLKPINALPPVHDVHNANELNLTGRERWMET
SIO_010081: AWJ20_2141
subclass of: SO_0000673
so part of: AWJ20_2141
location: complement(508767..510092)
location: region:508767-510092:-1
so has part: feature:508767-510092:-1:exon

XP_018737021.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:508767-510092:-1:exon

AWJ20_2142
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2142
so part of: sequence
location: <510271..>511653
location: region:510271-511653:1
so has part: feature:510271-511653:1:exon
subclass of: SO_0000010

30034021
type: Gene
SIO_000068: ncbigene

position:510271:1
position: 510271
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:511653:1
position: 511653
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:510271-511653:1:exon

AWJ20_2142
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2142
product: hypothetical protein
transcript id: XM_018879071.1
SIO_010081: AWJ20_2142
subclass of: SO_0000673
so part of: AWJ20_2142
location: <510271..>511653
location: region:510271-511653:1
so has part: feature:510271-511653:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:510271-511653:1:exon

AWJ20_2142
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2142
codon start: 1
product: hypothetical protein
translation: MAEINASRRILKPNGNGEPASSTGSIKDAVKLLRQQAAPAKSPTPPVQAHPEPEKLKVVIRLLPPEIKEKAVLDLLSPWVNINTCNYIYFSEGHVSKKGTKDPLPSTAYAGFKNAGLLKTFIREFRTLDIQGKLPELGPNVAIEYAPYQKGLRPSKPDPLAGTLEDDPVYKSFVQRLSDPTVVQVPLIAEEERSKNESKNKGKNKAVAKPSPGSLPKSADKNKKRGENSQSVENSREAVKSKTNSLTPTELAAQLTSVPSAGPQSSKKSSSAKASTQPIGEIANSGEKGSKGSGASSESKSKRGKAKGPKNVLTQNTAAKEETGIPTGPKSQATKKKGKAKVVNGDSAPKETSSQNKNASSDNVAPAVPTDPKQKSVRKPAKSKKHSNAENVSPGPAEPSSSANATGDSTSTTKPKKAHPPRRPAKSKPAADGESPKARPPPRKRDQNSPKPQPQSQPQP
SIO_010081: AWJ20_2142
subclass of: SO_0000673
so part of: AWJ20_2142
location: 510271..511653
location: region:510271-511653:1
so has part: feature:510271-511653:1:exon

XP_018737022.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:510271-511653:1:exon

AWJ20_2143
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2143
so part of: sequence
location: complement(<512040..>512807)
location: region:512040-512807:-1
so has part: feature:512040-512807:-1:exon
subclass of: SO_0000010

30034022
type: Gene
SIO_000068: ncbigene

position:512040:-1
position: 512040
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:512807:-1
position: 512807
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:512040-512807:-1:exon

AWJ20_2143
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2143
product: hypothetical protein
transcript id: XM_018879072.1
SIO_010081: AWJ20_2143
subclass of: SO_0000673
so part of: AWJ20_2143
location: complement(<512040..>512807)
location: region:512040-512807:-1
so has part: feature:512040-512807:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:512040-512807:-1:exon

AWJ20_2143
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2143
codon start: 1
product: hypothetical protein
translation: MVAESKVYLITGANRGIGFSLTKFLSERPNTVVIGTARQPEKAQELQALAKEKSNVHVAKYDAAGKDDAKELAKQVSKITDGVDVLIANAAISDPISFTTVKDAPDHTWLDHHTINVLGPIRLYQAFYDLLKAHETRQIVFVSSLAGSITGYAGLSSSAYGQSKAALNYTMKEISFEAKEDNFTVISIHPGVVMSDMGEAAKAKVVAEAPQFADFFETLGITPDESASAQLKVIDALKPEDSGKFLTYLGEETAF
SIO_010081: AWJ20_2143
subclass of: SO_0000673
so part of: AWJ20_2143
location: complement(512040..512807)
location: region:512040-512807:-1
so has part: feature:512040-512807:-1:exon

XP_018737023.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:512040-512807:-1:exon

AWJ20_2144
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SIT4
locus tag: AWJ20_2144
so part of: sequence
location: <514387..>515328
location: region:514387-515328:1
so has part: feature:514387-515328:1:exon
subclass of: SO_0000010

30034023
type: Gene
SIO_000068: ncbigene

position:514387:1
position: 514387
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:515328:1
position: 515328
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:514387-515328:1:exon

AWJ20_2144
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SIT4
locus tag: AWJ20_2144
product: type 2A-related serine/threonine-protein phosphatase SIT4
transcript id: XM_018879073.1
SIO_010081: AWJ20_2144
subclass of: SO_0000673
so part of: AWJ20_2144
location: <514387..>515328
location: region:514387-515328:1
so has part: feature:514387-515328:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:514387-515328:1:exon

AWJ20_2144
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SIT4
locus tag: AWJ20_2144
inference: similar to AA sequence:KEGG_Orthology:K15427
note: Type 2A-related serine-threonine phosphatase; functions in the G1/S transition of the mitotic cycle; regulator of COPII coat dephosphorylation; required for ER to Golgi traffic; interacts with Hrr25p kinase; cytoplasmic and nuclear protein that modulates functions mediated by Pkc1p including cell wall and actin cytoskeleton organization; similar to human PP6; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 1848673]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IMP] [PMID 23864707]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 15150670]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IGI] [PMID 1848673]; GO_process: GO:0031929 - TOR signaling [Evidence IMP] [PMID 15367655]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IMP] [PMID 12080055]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 18357452]; GO_process: GO:0016311 - dephosphorylation [Evidence IMP] [PMID 15367655]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 12080055]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IMP] [PMID 12080055]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 15843932]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]
codon start: 1
product: type 2A-related serine/threonine-protein phosphatase SIT4
translation: MFDSRAARKTVISESELQLLDKQMFPSPYFLQERGLTSLESNIQPVQSPVTVCGDIHGQFHDLLELFRVSGGLPDDVNYIFLGDFVDRGYFSLETFTLLMCLKALYPNRLTLVRGNHESRQITQVYGFYEECLSKYGSTTVWKYCCQVFDFLTLAAIIDGRILCVHGGLSPEIRMLDQIRVLSRAQEIPHEGGFCDLVWSDPDDVETWAVSPRGAGWIFGANVAREFNHVNGLNLIARAHQLVMEGFKYHFKDKDVVTVWSAPNYCYRCGNVASVMKVEDDLVPKFTIFNAVPDDAIKMRLAPQKTQRSEYFL
SIO_010081: AWJ20_2144
subclass of: SO_0000673
so part of: AWJ20_2144
location: 514387..515328
location: region:514387-515328:1
so has part: feature:514387-515328:1:exon

XP_018737024.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:514387-515328:1:exon

AWJ20_2145
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: LPX1
locus tag: AWJ20_2145
so part of: sequence
location: complement(<517358..>518506)
location: region:517358-518506:-1
so has part: feature:517358-518506:-1:exon
subclass of: SO_0000010

30034024
type: Gene
SIO_000068: ncbigene

position:517358:-1
position: 517358
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:518506:-1
position: 518506
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:517358-518506:-1:exon

AWJ20_2145
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: LPX1
locus tag: AWJ20_2145
product: Lpx1p
transcript id: XM_018879074.1
SIO_010081: AWJ20_2145
subclass of: SO_0000673
so part of: AWJ20_2145
location: complement(<517358..>518506)
location: region:517358-518506:-1
so has part: feature:517358-518506:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:517358-518506:-1:exon

AWJ20_2145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: LPX1
locus tag: AWJ20_2145
note: Peroxisomal matrix-localized lipase; required for normal peroxisome morphology; contains a peroxisomal targeting signal type 1 (PTS1) and a lipase motif; peroxisomal import requires the PTS1 receptor, Pex5p and self-interaction; transcriptionally activated by Yrm1p along with genes involved in multidrug resistance; oleic acid inducible; GO_component: GO:0005782 - peroxisomal matrix [Evidence IEA]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 12135984]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016298 - lipase activity [Evidence IDA] [PMID 18199283]; GO_function: GO:0016298 - lipase activity [Evidence ISS] [PMID 9200815]; GO_function: GO:0004806 - triglyceride lipase activity [Evidence IDA] [PMID 24187129]; GO_process: GO:0007031 - peroxisome organization [Evidence IEP] [PMID 12135984]; GO_process: GO:0019433 - triglyceride catabolic process [Evidence IGI] [PMID 24187129]
codon start: 1
product: Lpx1p
translation: MVDEHNLTLTIGNGIKISPKITEANYPRGHSRAVLYPDARLKIAYNVFTLFKNSGNIRPEEALNLVFCHGAQMCKELWNYTIELFFNDPDLGPKLGKVLAIDYVAHGDSYLANTESISFENSWEDASRDINAVVKEEKLIGTTILIGHSMGGMQGLWSAFYEPGLYDSVVTIDPQGYREEIDPVKSAKILGKKFSKLYDTRALDTFKNYDEYYHYMTKIGLSAKFHPRCQKDYIDASFVQQEDGSVIMKTPRWSQVSVYISGQTVYRDSLKVLGSLDCEVLHIFPTQGYKEGSDAIRAALRFATLVDIPNTGHLVPFEQPVETFEAMKGFVLRRYQRGLAIERQTYARASFSPAQRKQFVKTNFEQIFWGLKQGKSPLHSRL
SIO_010081: AWJ20_2145
subclass of: SO_0000673
so part of: AWJ20_2145
location: complement(517358..518506)
location: region:517358-518506:-1
so has part: feature:517358-518506:-1:exon

XP_018737025.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:517358-518506:-1:exon

AWJ20_2146
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2146
so part of: sequence
location: complement(<519024..>519986)
location: region:519024-519986:-1
so has part: feature:519024-519986:-1:exon
subclass of: SO_0000010

30034025
type: Gene
SIO_000068: ncbigene

position:519024:-1
position: 519024
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:519986:-1
position: 519986
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:519024-519986:-1:exon

AWJ20_2146
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2146
product: hypothetical protein
transcript id: XM_018879075.1
SIO_010081: AWJ20_2146
subclass of: SO_0000673
so part of: AWJ20_2146
location: complement(<519024..>519986)
location: region:519024-519986:-1
so has part: feature:519024-519986:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:519024-519986:-1:exon

AWJ20_2146
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2146
codon start: 1
product: hypothetical protein
translation: MDRFCSAATGWNTSLTSSDVKRRLPVEGTLWRDEYDGKTPYFNISQNSLNPVDDMNALGGYAYLVEATEFLDRIVNFLRRESVDFSSSDDGFSRWFNVFQELDSMLVRWKASLPEKWQVSRVHSNGWMDQNLTLAHVTHNASVILLHQNLAYATPDERIQILSSIASETCLTAASEIATIAKKFLYYTENIVAPQFCLCIFIAARALLAHSEFFDSPLKGEFDSLLSALKEGSKRWPTDQTSQDNLAKQFMDRLEAARDSHTALNVRSAAFEDEAKLSFSFPQFPDINGILSLSNSLEPTQYLQELDRIVLWDDGVAELE
SIO_010081: AWJ20_2146
subclass of: SO_0000673
so part of: AWJ20_2146
location: complement(519024..519986)
location: region:519024-519986:-1
so has part: feature:519024-519986:-1:exon

XP_018737026.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:519024-519986:-1:exon

AWJ20_2147
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2147
so part of: sequence
location: complement(<521272..>522444)
location: region:521272-522444:-1
so has part: feature:521272-522444:-1:exon
subclass of: SO_0000010

30034026
type: Gene
SIO_000068: ncbigene

position:521272:-1
position: 521272
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:522444:-1
position: 522444
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:521272-522444:-1:exon

AWJ20_2147
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2147
product: hypothetical protein
transcript id: XM_018879076.1
SIO_010081: AWJ20_2147
subclass of: SO_0000673
so part of: AWJ20_2147
location: complement(<521272..>522444)
location: region:521272-522444:-1
so has part: feature:521272-522444:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:521272-522444:-1:exon

AWJ20_2147
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2147
codon start: 1
product: hypothetical protein
translation: MTYPSSLSLYKEILDTAHLKKIIEVAKLKPTIPTGFPHCTPTGNTKEYIYEPFEWWTSGFFPGSLWAVKERLTKTDVVGLDENELNALAEDWKTRLEPHQFNTDTHDIGFLIMPAFWREYQLNRSKKAGEIIVQAAKSLMTRWSDTVQAFRSWTTTTSKRYNFDNPESDFLVIIDNMMNLDLLYAASIITGDSTYADHATKHADTTMKNQFRDDYSSYHLIVFDSKTGTKKIGLTCQGYSDSSCWSRGQAWALYGYASVYKYTKNPKYLEFAEKLADYFLSRVENGAVFWDFDAPKPCILDISAAMIACSGLLLICELRNDLKYKSKVDTILDFTMSHAATSSDSVVILDHSTVNNNATANHRIYDSGLVYADYYFLEVGNRLLDMNLLN
SIO_010081: AWJ20_2147
subclass of: SO_0000673
so part of: AWJ20_2147
location: complement(521272..522444)
location: region:521272-522444:-1
so has part: feature:521272-522444:-1:exon

XP_018737027.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:521272-522444:-1:exon

AWJ20_2148
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: HXT13
locus tag: AWJ20_2148
so part of: sequence
location: complement(<523091..>524659)
location: region:523091-524659:-1
so has part: feature:523091-524659:-1:exon
subclass of: SO_0000010

30034027
type: Gene
SIO_000068: ncbigene

position:523091:-1
position: 523091
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:524659:-1
position: 524659
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:523091-524659:-1:exon

AWJ20_2148
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: HXT13
locus tag: AWJ20_2148
product: hexose transporter HXT13
transcript id: XM_018879077.1
SIO_010081: AWJ20_2148
subclass of: SO_0000673
so part of: AWJ20_2148
location: complement(<523091..>524659)
location: region:523091-524659:-1
so has part: feature:523091-524659:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:523091-524659:-1:exon

AWJ20_2148
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: HXT13
locus tag: AWJ20_2148
inference: similar to AA sequence:KEGG_Orthology:K08139
codon start: 1
product: hexose transporter HXT13
translation: MSDTKEVLDLVQEEKTLVDVTPKLERFWVFYPHILKLNTLLVGAILAQIVSGFDGSMMNGLQSLVPWQQFFDHPTGGRLGTMSNGVTIGTLIAVPFASLMTDAIGRRFTIIVGCIIIVIGAILQGAAQNFSMFIGARILLGVGGCWASTAAGPLLAECAYPTQRPTVSAFLLASWPLGSFVAALVTWGPYRSDLKTSNWSWRIPSLLQGFFPLLQILLAFLGPESPRYLISKGREDEARAFFTKYHAAGDSEHPVVKFQMAEITAALELEKNDTLSLKNYLAWFKTKAMRHRLFICIVVPAFQQLSGNAIISYYLTLILNSIGITDSLTQLKINIGMTTVSLTADVISAIVVSAYRRRRLFLTGYTSMLLVYIVFTVLSAENQRKNFTDHSLASGVVAMIFVYQIAYHIAAPIAIAYIMEVCPYNQRATGSMLYQLSANVVGTFNNYVNPIAMAAINWRYYIVWICQLVFQISIVYFVFPETAGKDLEDIAEVFGEVGARRAIANSAGLTEKMEAIEHVESV
SIO_010081: AWJ20_2148
subclass of: SO_0000673
so part of: AWJ20_2148
location: complement(523091..524659)
location: region:523091-524659:-1
so has part: feature:523091-524659:-1:exon

XP_018737028.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:523091-524659:-1:exon

AWJ20_2149
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: GPI12
locus tag: AWJ20_2149
so part of: sequence
location: <525656..>526498
location: region:525656-526498:1
so has part: feature:525656-526498:1:exon
subclass of: SO_0000010

30034028
type: Gene
SIO_000068: ncbigene

position:525656:1
position: 525656
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:526498:1
position: 526498
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:525656-526498:1:exon

AWJ20_2149
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: GPI12
locus tag: AWJ20_2149
product: Gpi12p
transcript id: XM_018879078.1
SIO_010081: AWJ20_2149
subclass of: SO_0000673
so part of: AWJ20_2149
location: <525656..>526498
location: region:525656-526498:1
so has part: feature:525656-526498:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:525656-526498:1:exon

AWJ20_2149
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: GPI12
locus tag: AWJ20_2149
inference: similar to AA sequence:KEGG_Orthology:K03434
note: ER membrane protein involved in the second step of GPI anchor assembly; the second step is the de-N-acetylation of the N-acetylglucosaminylphosphatidylinositol intermediate; functional homolog of human PIG-Lp; GPI stands for glycosylphosphatidylinositol; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence ISS] [PMID 10085243]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000225 - N-acetylglucosaminylphosphatidylinositol deacetylase activity [Evidence IEA]; GO_function: GO:0000225 - N-acetylglucosaminylphosphatidylinositol deacetylase activity [Evidence ISS] [PMID 10085243]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence ISS] [PMID 10085243]
codon start: 1
product: Gpi12p
translation: MNLLLPILVFALPRFIWSIITRTIPYGAPFDLTNKNITFLISHPDDEVMFFGPSLALLTIPEFNNTVSIVSLSSGNSEGLGATRKIELARSAWYFAIPPSRLFVVENEEDFPDSMEAAWDPKLISDVLGDIPAISNTDAIVTFDSQGVSAHTNHIATGKGASLYVQEHSDVGLWKLETVSIYRKYLMFFDAFISYYAVPWVRKVHEQIYDSEWAAKYDLLKHIPEPTAEPVRASIISRQVQFTQAKSAMIKAHESQMKWYRHGWVIFSRYMIVNDLIKEN
SIO_010081: AWJ20_2149
subclass of: SO_0000673
so part of: AWJ20_2149
location: 525656..526498
location: region:525656-526498:1
so has part: feature:525656-526498:1:exon

XP_018737029.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:525656-526498:1:exon

AWJ20_2150
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2150
so part of: sequence
location: complement(<526666..>528402)
location: region:526666-528402:-1
so has part: feature:526666-528402:-1:exon
subclass of: SO_0000010

30034030
type: Gene
SIO_000068: ncbigene

position:526666:-1
position: 526666
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:528402:-1
position: 528402
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:526666-528402:-1:exon

AWJ20_2150
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2150
product: hypothetical protein
transcript id: XM_018879080.1
SIO_010081: AWJ20_2150
subclass of: SO_0000673
so part of: AWJ20_2150
location: complement(<526666..>528402)
location: region:526666-528402:-1
so has part: feature:526666-528402:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:526666-528402:-1:exon

AWJ20_2150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2150
codon start: 1
product: hypothetical protein
translation: MITRCSRAGPLLVSSAVARSLKSTASNFLRNETKLMSTSQPFAKDIFIRSEPYREPFDLEGLKSGLVDASMPSDHLETDLDQKFRGDPTSIFKRSEVATAHGRLGSPIIPSVSHSPNVERLGQFIASKDLNSALHTFQKLIDEDENGLSHFTATQCSQLLAMIPLGPIKAPQYWPLAQKIASAIKASGHKLQAHDYARLIECAFKAHDYDSIDQIWNEVQTNLPVSLHSTDLWNKYIMTTCNAYPKFWRQWAGMQVKRNEFRMFKPDETPLAVNDAVRLLGNMLENNIHPNARTYELVILYLCQKGDLADVRSIIWSIWHITTEPNVLRRSRSKYRKQLRPSKDSPLAPTISTLKAVIDGFCMNGKVTEALRLMNRLQKEYRIDISGGSRGGKAIHLWSAVLSWAFITQRPIEGAFTPADTFENVWTIMTEQYGIKPTDEMYRLRGRFFDSNEKYEDLIADIPEILNSGNPHRLEIARRNLQKAVKGIARQGQIDEAVSIVNEWSQALGEFEQVRENLIKYVNTSSTIQRLIAERSPNETNSNTKSSSHDLHDNSIHGETNPFDSNVNKTNSARLDTV
SIO_010081: AWJ20_2150
subclass of: SO_0000673
so part of: AWJ20_2150
location: complement(526666..528402)
location: region:526666-528402:-1
so has part: feature:526666-528402:-1:exon

XP_018737030.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:526666-528402:-1:exon

AWJ20_2151
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: YEF3
locus tag: AWJ20_2151
so part of: sequence
location: complement(<528970..>532134)
location: region:528970-532134:-1
so has part: feature:528970-532134:-1:exon
subclass of: SO_0000010

30034031
type: Gene
SIO_000068: ncbigene

position:528970:-1
position: 528970
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:532134:-1
position: 532134
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:528970-532134:-1:exon

AWJ20_2151
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: YEF3
locus tag: AWJ20_2151
product: translation elongation factor EF-3
transcript id: XM_018879081.1
SIO_010081: AWJ20_2151
subclass of: SO_0000673
so part of: AWJ20_2151
location: complement(<528970..>532134)
location: region:528970-532134:-1
so has part: feature:528970-532134:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:528970-532134:-1:exon

AWJ20_2151
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: YEF3
locus tag: AWJ20_2151
inference: similar to AA sequence:KEGG_Orthology:K03235
note: Translational elongation factor EF-3; member of the ABC superfamily; stimulates EF-1 alpha-dependent binding of aminoacyl-tRNA by the ribosome; normally expressed in zinc deficient cells; HEF3 has a paralog, YEF3, that arose from the whole genome duplication; GO_component: GO:0022626 - cytosolic ribosome [Evidence IPI] [PMID 9544245]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 9544245]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0003746 - translation elongation factor activity [Evidence IEA]; GO_function: GO:0003746 - translation elongation factor activity [Evidence IGI,ISS] [PMID 9544245]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006414 - translational elongation [Evidence IEA,IEA]; GO_process: GO:0006414 - translational elongation [Evidence IGI] [PMID 9544245]
codon start: 1
product: translation elongation factor EF-3
translation: MAAAAEKGESIKVLNELFAKLVVADSVDERKSVAHDVASFINGPIEEHDLPEKFFADLKGAINNKKDVRAKQNGIEAYGSIAASKELAPSVEPLLVSLTSDVLEKAGDKNVEVRDAASLAVKELAKNVTPHAVKALLPHLTNSIANSNKWTEKVAALEALSILVDSARDQIALRMPELIPVLSEAMWDTKPEVKKAATATITKSTETIDNKDIINFIPALIACIAKPTEVPETVHLLGATTFVSEVTTATLSIMVPLLSRGLAERDTAIKRKAAVIADNMCKLVDDPQVVAPFLSKLYPALKQNYSNIADPEARDVTLRAINTLKRVGEIGDDDKIPEISTAGDTGVNLAIIKDLLKDKKVDKRFDVIIEYAAAIAGDLIDERLINEGDWAETLRPFLVVFLHDGEARTLIEELRKKSVANIPGGPAFDEEDDEGEDLCNCEFSLAYGAKILLNRTQLRLKRARRYGLCGPNGAGKSTLMRAIANGQVEGFPTQDECKTVYVEHDIDGTHADTNVVDYVIATAGEEVGSKETVTKTLVEFGFVNGMTEMPITSLSGGWKMKLALATAVLRNADILLLDEPTNHLDTVNVAWLINYLTTCNITSIIVSHDSGFLDKVCQYIIHYERYKLRKYKGNLSEFVKKVPAAKSYYELGASDLEFKFPEPGYLEGVKTKQKAIVKVSNMSFQYPGTSKPQIRDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGDVYVHENCRIAYIKQHAFAHIDNHLDKTPSEYIQWRFQTGEDRETMDRANRQISESDEEAMNKIYKIEGTPRRVNEVLARRKFKNSYEYECSFFLGENIGMKNERWIAMGSVDNAWIPRSELIETHSKLVAEVDMKEALASGQFRPLTRKEIESHCAMLGLEAELVSHSRIRGLSGGQKVKLVLAACTWQRPHLIVLDEPTNYLDRDSLGALSKAIKEFEGGVVIITHSAEFTKNLTEEVWAVLDGKMTPSGHNWVTGQGAGPRLDQKEDEEDKFDAFGNKIEAKKKAKKLSAAELRKKKKERMKKKKELGDAYVSSDDEF
SIO_010081: AWJ20_2151
subclass of: SO_0000673
so part of: AWJ20_2151
location: complement(528970..532134)
location: region:528970-532134:-1
so has part: feature:528970-532134:-1:exon

XP_018737031.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:528970-532134:-1:exon

AWJ20_2152
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2152
so part of: sequence
location: <534748..>534829
location: region:534748-534829:1
so has part: feature:534748-534829:1:exon
subclass of: SO_0000663

30034032
type: Gene
SIO_000068: ncbigene

position:534748:1
position: 534748
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:534829:1
position: 534829
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:534748-534829:1:exon

AWJ20_2152
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_2152
product: tRNA-Gln
SIO_010081: AWJ20_2152
subclass of: SO_0000673
so part of: AWJ20_2152
location: <534748..>534829
location: region:534748-534829:1
so has part: feature:534748-534829:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:534748-534829:1:exon

AWJ20_2153
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RCK2
locus tag: AWJ20_2153
so part of: sequence
location: complement(<535972..>537381)
location: region:535972-537381:-1
so has part: feature:535972-537381:-1:exon
subclass of: SO_0000010

30034033
type: Gene
SIO_000068: ncbigene

position:535972:-1
position: 535972
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:537381:-1
position: 537381
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:535972-537381:-1:exon

AWJ20_2153
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RCK2
locus tag: AWJ20_2153
product: serine/threonine protein kinase RCK2
transcript id: XM_018879082.1
SIO_010081: AWJ20_2153
subclass of: SO_0000673
so part of: AWJ20_2153
location: complement(<535972..>537381)
location: region:535972-537381:-1
so has part: feature:535972-537381:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:535972-537381:-1:exon

AWJ20_2153
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RCK2
locus tag: AWJ20_2153
codon start: 1
product: serine/threonine protein kinase RCK2
translation: MRQLNHKNVVELIDFKETKDHYFIVLELIPGGELFHQIVRLTYFSEDLARHVIVQVAEAVRYLHEVAGVVHRDIKPENLLFYPIDFIPSKNKTIRKGEDESKEDEGQFVPGLGAGGIGVIKLADFGLSKVIWDSKTMTPCGTVGYTAPEIVKDERYSKSVDMWALGCVLYTVLCGFPPFYDESIEVLTEKVAKGQYTFLSPWWDEISAGAKDLVSHLLTVDPDSRYTIDQFLQHPWITGATSRHAGPAAVAAAATASTGIVGSTGNSLGVIPEIKFTGSNNSVGTATTDITMINAVPERSQAASASTKEFPTPVVATLKEVFDVSNAVHRMEEENARNNRWKGRFQDNLLEEEEEEEEEEDDTAGHGSVTHNEYTMDVEPAYNDPSLDGVEQKLQRVSVSKAVPISTTSSKTKASHAVPRSSRKPHNHQHHHGPLATGGLFELHLEGATLIERRKRAGKQPPITHSLVT
SIO_010081: AWJ20_2153
subclass of: SO_0000673
so part of: AWJ20_2153
location: complement(535972..537381)
location: region:535972-537381:-1
so has part: feature:535972-537381:-1:exon

XP_018737032.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:535972-537381:-1:exon

AWJ20_2154
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2154
so part of: sequence
location: complement(<537421..>538278)
location: region:537421-538278:-1
so has part: feature:537421-538278:-1:exon
subclass of: SO_0000010

30034034
type: Gene
SIO_000068: ncbigene

position:537421:-1
position: 537421
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:538278:-1
position: 538278
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:537421-538278:-1:exon

AWJ20_2154
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2154
product: hypothetical protein
transcript id: XM_018879083.1
SIO_010081: AWJ20_2154
subclass of: SO_0000673
so part of: AWJ20_2154
location: complement(<537421..>538278)
location: region:537421-538278:-1
so has part: feature:537421-538278:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:537421-538278:-1:exon

AWJ20_2154
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2154
codon start: 1
product: hypothetical protein
translation: MGQQPLLDPAAGVGIAGVPQQVGAPGAGPTGSLGHGYDTRQSVSEPNLVQTTQQQQQQPQQHTHIQSSQRKEAYDNAVKQIIAEENEERSKIHRYPGLERFDLIEKMGDGAFSIVYKAYDRTNKTYVAVKIIHKQELSTNQVCFLTRASLLTKHWPPVAARDCLNQRTGPVARACAASSPGIPSSVADTVLERPPFGPRCQKSRHFYSGEAWAGGGVPPAAGAPPQTLVAPLASLESGVGWPANGGWDTWPSPAKTTRAKREEQPGSGAEPQPPEADPPLRVSQN
SIO_010081: AWJ20_2154
subclass of: SO_0000673
so part of: AWJ20_2154
location: complement(537421..538278)
location: region:537421-538278:-1
so has part: feature:537421-538278:-1:exon

XP_018737033.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:537421-538278:-1:exon

AWJ20_2155
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: EMP70
locus tag: AWJ20_2155
so part of: sequence
location: <541873..>543564
location: region:541873-543564:1
so has part: feature:541873-543564:1:exon
subclass of: SO_0000010

30034035
type: Gene
SIO_000068: ncbigene

position:541873:1
position: 541873
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:543564:1
position: 543564
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:541873-543564:1:exon

AWJ20_2155
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: EMP70
locus tag: AWJ20_2155
product: Emp70p
transcript id: XM_018879084.1
SIO_010081: AWJ20_2155
subclass of: SO_0000673
so part of: AWJ20_2155
location: <541873..>543564
location: region:541873-543564:1
so has part: feature:541873-543564:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:541873-543564:1:exon

AWJ20_2155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: EMP70
locus tag: AWJ20_2155
inference: similar to AA sequence:KEGG_Orthology:K17086
note: Protein with a role in cellular adhesion and filamentous growth; also endosome-to-vacuole sorting; similar to Tmn3p; member of Transmembrane Nine family of proteins with 9 transmembrane segments; EMP70 has a paralog, TMN2, that arose from the whole genome duplication; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 8314797]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 20681974]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IGI,IMP] [PMID 20681974]; GO_process: GO:0016197 - endosomal transport [Evidence IMP] [PMID 20526336]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 18178563]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IGI] [PMID 18178563]; GO_process: GO:0007034 - vacuolar transport [Evidence IGI] [PMID 20526336]
codon start: 1
product: Emp70p
translation: MRAAPSLVYNWNIDHLPVTENLKHLESEHDDDDDDDDDDDDDGDDNAKLNKLFGGRRINRQVWYKGDGIRFGRYDRHKPYIMFYNHFNFEIEYHEHVPGQYRVVGAAVTPESKNYTTQESAAKCSAPKSPISFPAGRPQNAQSINITYSYSVKWIKSDVRWASRWDKYLALRGSRIRWKPLITLIVVSTSTILCAVLSEIAFCFVLQEVTKIQQAKSNPNTITSGLKSLKEVALRSPKNTLLLSVLVGNGCHLFVLALLTIVFAAIGVLSPEKRGSIATMAIYTYSFTSIIAGYTAAYCFRAYKGEDFVQDEDENEETIIKTDLTLWSTLFLLTPVLIPGLVFATFLVLNLVIVVRGSDGAVPFPAILKLTGLWFFVSIPLSLLGSLIGKKRPMNGYKKLVFKSNSPAPEIPKLPFLLKPITRTMLAGLLPFTAVAAELALIANSLWLNQVFFMFGFLMATYIILVLGSVVITIGTVYLMLLAGDYRWQWSSFILSGSPAIYVFLSCLSLLIFRYSYNGLTAILLYVSYSFLLSAAIFFITGSIGFLSTWAFVHYIYSSVRND
SIO_010081: AWJ20_2155
subclass of: SO_0000673
so part of: AWJ20_2155
location: 541873..543564
location: region:541873-543564:1
so has part: feature:541873-543564:1:exon

XP_018737034.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:541873-543564:1:exon

AWJ20_2156
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: EMP70
locus tag: AWJ20_2156
so part of: sequence
location: <544524..>546212
location: region:544524-546212:1
so has part: feature:544524-546212:1:exon
subclass of: SO_0000010

30034036
type: Gene
SIO_000068: ncbigene

position:544524:1
position: 544524
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:546212:1
position: 546212
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:544524-546212:1:exon

AWJ20_2156
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: EMP70
locus tag: AWJ20_2156
product: Emp70p
transcript id: XM_018879085.1
SIO_010081: AWJ20_2156
subclass of: SO_0000673
so part of: AWJ20_2156
location: <544524..>546212
location: region:544524-546212:1
so has part: feature:544524-546212:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:544524-546212:1:exon

AWJ20_2156
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: EMP70
locus tag: AWJ20_2156
inference: similar to AA sequence:KEGG_Orthology:K17086
note: Protein with a role in cellular adhesion and filamentous growth; also endosome-to-vacuole sorting; similar to Tmn3p; member of Transmembrane Nine family of proteins with 9 transmembrane segments; EMP70 has a paralog, TMN2, that arose from the whole genome duplication; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 8314797]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 20681974]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IGI,IMP] [PMID 20681974]; GO_process: GO:0016197 - endosomal transport [Evidence IMP] [PMID 20526336]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 18178563]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IGI] [PMID 18178563]; GO_process: GO:0007034 - vacuolar transport [Evidence IGI] [PMID 20526336]
codon start: 1
product: Emp70p
translation: MRTANSLAYSWNIDHLPVTENPEHRESEHDDDDDDDVDHDDDDDNSKLNHFFGERRINRQLWYQGNGVRFGVLDFRGEPHIMFYNHFDFEIEYHEHAPGQYRVVGAAVTPESKNYTTQESAAKCSAPKSPISFPARRLRGNAQSINITYSYSVKWIKSDVRWASRWDKYLALRGSRIRWKPLITLIVVSTILCVVLSGIAFYFVQKEVTKIQQAKSNPNTIMSGLKSLKDVALRSPKNTLLLSVLVGNGSHLFVLALLTIVFAAIGVLSPEKRGSIATMAIYTYSFTSIIAGYTAAYCFRAYKGEDFVQDEDENEETIIKTDLTLWSTLFLLTPVLIPGLVFATFLVLNLVIVVRGSDGAVPFPAILKLTGLWFFVSIPLSLLGSLIGKKRPMNGYKKLVFKSNSPAPEIPKLPFLLKPITRTMLAGLLPFTAVAAELALIANSLWLNQVFFMFGFLMATYIILVLGSVVITIGTVYLMLLAGDYRWQWSSFILSGSPAIYVFLSCLSLLIFRYSYNGLTAILLYVSYSFLLSAAIFFITGSIGFLSTWAFVHYIYSFVRND
SIO_010081: AWJ20_2156
subclass of: SO_0000673
so part of: AWJ20_2156
location: 544524..546212
location: region:544524-546212:1
so has part: feature:544524-546212:1:exon

XP_018737035.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:544524-546212:1:exon

AWJ20_2157
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: KAR3
locus tag: AWJ20_2157
so part of: sequence
location: complement(<546281..>548509)
location: region:546281-548509:-1
so has part: feature:546281-548509:-1:exon
subclass of: SO_0000010

30034037
type: Gene
SIO_000068: ncbigene

position:546281:-1
position: 546281
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:548509:-1
position: 548509
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:546281-548509:-1:exon

AWJ20_2157
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: KAR3
locus tag: AWJ20_2157
product: Kar3p
transcript id: XM_018879086.1
SIO_010081: AWJ20_2157
subclass of: SO_0000673
so part of: AWJ20_2157
location: complement(<546281..>548509)
location: region:546281-548509:-1
so has part: feature:546281-548509:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:546281-548509:-1:exon

AWJ20_2157
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: KAR3
locus tag: AWJ20_2157
inference: similar to AA sequence:KEGG_Orthology:K10405
note: Minus-end-directed microtubule motor; functions in mitosis and meiosis, localizes to the spindle pole body and localization is dependent on functional Cik1p, required for nuclear fusion during mating; potential Cdc28p substrate; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 2138512]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005871 - kinesin complex [Evidence IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005874 - microtubule [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0000922 - spindle pole [Evidence IDA] [PMID 14562095]; GO_component: GO:0005816 - spindle pole body [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 11729143]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 2138512]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 8106549]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008017 - microtubule binding [Evidence IEA]; GO_function: GO:0008017 - microtubule binding [Evidence IDA] [PMID 22734002]; GO_function: GO:0003777 - microtubule motor activity [Evidence IEA]; GO_function: GO:0008569 - minus-end-directed microtubule motor activity [Evidence IDA] [PMID 8041770]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IPI] [PMID 16107877]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0000741 - karyogamy [Evidence IEA]; GO_process: GO:0000742 - karyogamy involved in conjugation with cellular fusion [Evidence IMP] [PMID 2138512]; GO_process: GO:0007126 …
codon start: 1
product: Kar3p
translation: MELQFLENIPPKTNNANSNATRLQRPTTVRKPTLKSSIPSSRSVLQERQNIEVTSSKPYSVKRTALPISRNVPIQGRSIKELAPQNHISAIPSIEPRQDQSETHLQTEIARLRTDEAKLKFERDKLEDKLKAFHDKATEREDTIRREKDQIINSLQNELHSTKDACHLKIVEFQREYNDALSEKIESERQRYQELLSQQQSHYQTQLETHRQQIEHEKQLEKAASEQKLLHEMELIKHEYERENQKLIFEVENSRSELEKIREESSRQLQEVVGELKRENLRLITELQEELKQKEHMYSQEKEAFLTQLQSQREQLNQNMTQISIQARELETTKMQLTDALANSHSHQTLEKSQQSTIYELQLLLRTAEEHKNIAEKERDIAKEKLFKEETVRRKLHNQLQELKGNIRVFCRVRPPLQSEQNNQPVAKITFPDKDMESQQLLVCGPASESAVGSVTTKVHPFAFDKVFPPSSSNEEVFDEVSELIQSALDGYNVCIFAYGQTGSGKTYTMSGNNGMIPKAVTKIFEASETLKERGWRYVITGEFLEIYNETMRDLLNSSEENKLEIRHDAKQQKTSIINITSVKLDSPSTVYSVLRQADSNRSVAATAANERSSRSHSVFILRITGENVETGEKSEGTLNLIDLAGSERLAHSQATGIRLKETQAINKSLSYLGDVICALGSEDKSHIPYRNSKLTYLLQYSLSGNSKTLMFVNVSPLEPHVNESLSSLRFATKVNNTKMKK
SIO_010081: AWJ20_2157
subclass of: SO_0000673
so part of: AWJ20_2157
location: complement(546281..548509)
location: region:546281-548509:-1
so has part: feature:546281-548509:-1:exon

XP_018737036.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:546281-548509:-1:exon

AWJ20_2158
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RRP15
locus tag: AWJ20_2158
so part of: sequence
location: <548971..>549747
location: region:548971-549747:1
so has part: feature:548971-549747:1:exon
subclass of: SO_0000010

30034038
type: Gene
SIO_000068: ncbigene

position:548971:1
position: 548971
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:549747:1
position: 549747
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:548971-549747:1:exon

AWJ20_2158
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RRP15
locus tag: AWJ20_2158
product: Rrp15p
transcript id: XM_018879087.1
SIO_010081: AWJ20_2158
subclass of: SO_0000673
so part of: AWJ20_2158
location: <548971..>549747
location: region:548971-549747:1
so has part: feature:548971-549747:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:548971-549747:1:exon

AWJ20_2158
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RRP15
locus tag: AWJ20_2158
note: Nucleolar protein; constituent of pre-60S ribosomal particles; required for proper processing of the 27S pre-rRNA at the A3 and B1 sites to yield mature 5.8S and 25S rRNAs; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 15769876]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15769876]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15769876]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]
codon start: 1
product: Rrp15p
translation: MAKGSTNVQASKPKGSIKLQKKADVSPPQLKRKREEEAQEEEDEDASEDNEEEDSDDFEGDSGDYSDDLNDEFSEAEADSSEMEDDQFESEDENVPSKSRLEAKKEKEQESFAKAMSAILQSKVKAHDRENPILVRSKKTAKDLETSRLDAKARRALAAEKKQVQDKDRVRNLLEVRPQEDGSEPQTVQQLLEQEKKLRKIAQRGVVRLFNAVLASQTVVNTASNSGEKILGLTKKEEQMTEMSKDTFLDLIRSGGKK
SIO_010081: AWJ20_2158
subclass of: SO_0000673
so part of: AWJ20_2158
location: 548971..549747
location: region:548971-549747:1
so has part: feature:548971-549747:1:exon

XP_018737037.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:548971-549747:1:exon

AWJ20_2159
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: YAH1
locus tag: AWJ20_2159
so part of: sequence
location: complement(<550014..>550577)
location: region:550014-550577:-1
so has part: feature:550014-550577:-1:exon
subclass of: SO_0000010

30034039
type: Gene
SIO_000068: ncbigene

position:550014:-1
position: 550014
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:550577:-1
position: 550577
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:550014-550577:-1:exon

AWJ20_2159
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: YAH1
locus tag: AWJ20_2159
product: Yah1p
transcript id: XM_018879088.1
SIO_010081: AWJ20_2159
subclass of: SO_0000673
so part of: AWJ20_2159
location: complement(<550014..>550577)
location: region:550014-550577:-1
so has part: feature:550014-550577:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:550014-550577:-1:exon

AWJ20_2159
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: YAH1
locus tag: AWJ20_2159
note: Ferredoxin of the mitochondrial matrix; required for formation of cellular iron-sulfur proteins; involved in heme A biosynthesis; homologous to human adrenodoxin; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 10375636]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO_function: GO:0009055 - electron carrier activity [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016653 - oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor [Evidence IGI,IMP] [PMID 11788607]; GO_process: GO:0006784 - heme a biosynthetic process [Evidence IGI,IMP] [PMID 11788607]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 12970193]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IMP] [PMID 20534343]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IMP] [PMID 21944752]
codon start: 1
product: Yah1p
translation: MTLRLISKLASPSALRRCALASSKSQAFGTASLLQRSAIRNAVSGPGGNIYTARSLHTTAIAHHGHVHKPNPGEELHVTFITKEGEQIQLEVAEGDNLLDIAQAHNMDMEGACGGSCACSTCHVIVDPDYYDKMEEPDDDENDMLDLAFGLTETSRLGCQIKMTKELDGVRVALPAMTRNLQARDFQ
SIO_010081: AWJ20_2159
subclass of: SO_0000673
so part of: AWJ20_2159
location: complement(550014..550577)
location: region:550014-550577:-1
so has part: feature:550014-550577:-1:exon

XP_018737038.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:550014-550577:-1:exon

AWJ20_2160
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: STE6
locus tag: AWJ20_2160
so part of: sequence
location: complement(<553737..>556373)
location: region:553737-556373:-1
so has part: feature:553737-556373:-1:exon
subclass of: SO_0000010

30034041
type: Gene
SIO_000068: ncbigene

position:553737:-1
position: 553737
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:556373:-1
position: 556373
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:553737-556373:-1:exon

AWJ20_2160
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: STE6
locus tag: AWJ20_2160
product: ATP-binding cassette alpha-factor transporter STE6
transcript id: XM_018879090.1
SIO_010081: AWJ20_2160
subclass of: SO_0000673
so part of: AWJ20_2160
location: complement(<553737..>556373)
location: region:553737-556373:-1
so has part: feature:553737-556373:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:553737-556373:-1:exon

AWJ20_2160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: STE6
locus tag: AWJ20_2160
inference: similar to AA sequence:KEGG_Orthology:K05658
note: Plasma membrane ATP-binding cassette (ABC) transporter; required for the export of a-factor, catalyzes ATP hydrolysis coupled to a-factor transport; contains 12 transmembrane domains and two ATP binding domains; expressed only in MATa cells; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 8045256]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 12374868]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 7679674]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 7679674]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0015440 - peptide-transporting ATPase activity [Evidence IDA,IMP] [PMID 11389139]; GO_function: GO:0015440 - peptide-transporting ATPase activity [Evidence IDA,IMP] [PMID 8626301]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0000770 - peptide pheromone export [Evidence IMP] [PMID 2569166]; GO_process: GO:0019236 - response to pheromone [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]
codon start: 1
product: ATP-binding cassette alpha-factor transporter STE6
translation: MCHILITIKINFKYPTRNEMILDGFNINIKAGQLSFIVGRSGSGKSTLGHILLKQYERASGAIFIDGLVFDTISPRWLCDNIFVVEQQSILFDVSIDENIKLAASRATNTESIRNACDQFFVSEFVGELPQGWKTNAGLQGKNLSGGQKQRISLARARLRNTPIMIFDESFSALDPQMRAKCLEEIRKYRADKTTIIITHELAQINPDDYLYIMESGNIVEHGLRKDLEADSARLNFLADLSNSSNRASEDLSFSENWFPDLPSKRHSRVDESIAHRRQSTIDPYNQFISEDEQIDSKVQAWKSKKRISTTKLLFQLINSLPNKIVFGIGIVSAVLNAITNPLFSFAFSNLLNGIIYQKQMGTSDYSLTRWTVIVIAIAIGDGITTYGRTALDIASETWLRHARVRSLRNILDRELLDLNTDTESSLTSLLMNDSESVRLLVSRFTSGVISCVILGVFAIVWSMISGWQLSLVGLSFIPCFYFSSAWYKSIVTKWEALYREETTSVIGLIDEVVAGIKSVKLLALENYFKKEVDKREMTLNAIAFRRAIFIGLGFGVNQIFMYITQAIILYYGMTLISDGKYSVQQAMMVFTLLIFSLVTLEQTVGTIPILSNGFETCREILDLMKRSPSMEKAKAHYDITKGSIKFENVGFWYSSTTSTEDSELEGSGTSPVLLNFNLEVNSNEVVAITGRSGCGKSTLARLVTKLYSPQRGTISVDGNDISDLSTRSLRKKIAIVSQMPLSFFEGTIADNLRYGMKDDRTTPERQQMDLMRQACRESGLDEFIMSLEEGYETKMGSSSSSGSLLSGGQLQRLGIARALLRSPKILILDECTSALDAESIDIIKQMIKYHRTVRDMTIIIITHQEEMTDGVDRVIKM
SIO_010081: AWJ20_2160
subclass of: SO_0000673
so part of: AWJ20_2160
location: complement(553737..556373)
location: region:553737-556373:-1
so has part: feature:553737-556373:-1:exon

XP_018737039.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:553737-556373:-1:exon

AWJ20_2161
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: OPI3
locus tag: AWJ20_2161
so part of: sequence
location: <558783..>559064
location: region:558783-559064:1
so has part: feature:558783-559064:1:exon
subclass of: SO_0000010

30034042
type: Gene
SIO_000068: ncbigene

position:558783:1
position: 558783
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:559064:1
position: 559064
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:558783-559064:1:exon

AWJ20_2161
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: OPI3
locus tag: AWJ20_2161
product: bifunctional phosphatidyl-N-methylethanolamine N-methyltransferase/phosphatidyl-N-dimethylethanolamine N-methyltransferase
transcript id: XM_018879091.1
SIO_010081: AWJ20_2161
subclass of: SO_0000673
so part of: AWJ20_2161
location: <558783..>559064
location: region:558783-559064:1
so has part: feature:558783-559064:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:558783-559064:1:exon

AWJ20_2161
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: OPI3
locus tag: AWJ20_2161
inference: similar to AA sequence:KEGG_Orthology:K00550
note: Methylene-fatty-acyl-phospholipid synthase; catalyzes the last two steps in phosphatidylcholine biosynthesis; also known as phospholipid methyltransferase; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 2445736]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0008170 - N-methyltransferase activity [Evidence IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0080101 - phosphatidyl-N-dimethylethanolamine N-methyltransferase activity [Evidence IEA]; GO_function: GO:0080101 - phosphatidyl-N-dimethylethanolamine N-methyltransferase activity [Evidence IDA,IGI] [PMID 2445736]; GO_function: GO:0080101 - phosphatidyl-N-dimethylethanolamine N-methyltransferase activity [Evidence IMP] [PMID 2684666]; GO_function: GO:0000773 - phosphatidyl-N-methylethanolamine N-methyltransferase activity [Evidence IEA]; GO_function: GO:0000773 - phosphatidyl-N-methylethanolamine N-methyltransferase activity [Evidence IDA,IGI] [PMID 2445736]; GO_function: GO:0000773 - phosphatidyl-N-methylethanolamine N-methyltransferase activity [Evidence IMP] [PMID 2684666]; GO_function: GO:0004608 - phosphatidylethanolamine N-methyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IEA]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IMP] [PMID 23000174]; GO_process: GO:0006656 - phosphatidylcholin…
codon start: 1
product: bifunctional phosphatidyl-N-methylethanolamine N-methyltransferase/phosphatidyl-N-dimethylethanolamine N-methyltransferase
translation: MWALGVTGTYLGDYFGILMDERVTGFPFNVTDNPMYYGSFLSFLGTGLWFAKPAGIAVSGFVLVMYLIALRFEEPFTAEIYAKRERERAKKAK
SIO_010081: AWJ20_2161
subclass of: SO_0000673
so part of: AWJ20_2161
location: 558783..559064
location: region:558783-559064:1
so has part: feature:558783-559064:1:exon

XP_018737040.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:558783-559064:1:exon

AWJ20_2162
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: FRE1
locus tag: AWJ20_2162
so part of: sequence
location: complement(<559225..>561030)
location: region:559225-561030:-1
so has part: feature:559225-561030:-1:exon
subclass of: SO_0000010

30034043
type: Gene
SIO_000068: ncbigene

position:559225:-1
position: 559225
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:561030:-1
position: 561030
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:559225-561030:-1:exon

AWJ20_2162
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: FRE1
locus tag: AWJ20_2162
product: Fre1p
transcript id: XM_018879092.1
SIO_010081: AWJ20_2162
subclass of: SO_0000673
so part of: AWJ20_2162
location: complement(<559225..>561030)
location: region:559225-561030:-1
so has part: feature:559225-561030:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:559225-561030:-1:exon

AWJ20_2162
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: FRE1
locus tag: AWJ20_2162
note: Ferric reductase and cupric reductase; reduces siderophore-bound iron and oxidized copper prior to uptake by transporters; expression induced by low copper and iron levels; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17507646]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8164662]; GO_function: GO:0052851 - ferric-chelate reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence IDA] [PMID 8164662]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0015677 - copper ion import [Evidence IDA] [PMID 7814363]; GO_process: GO:0006825 - copper ion transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0006826 - iron ion transport [Evidence IDA] [PMID 8164662]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]
codon start: 1
product: Fre1p
translation: MLASSRSLPPSYSITNQQQHGNEPTEESPFRYDSPFEGPFREELIAEIYKGRDLLVYYEYILLGTFLLIVVAHWTNKLLWYIRNKQRNPGLPIYNRNENSTEESLISEDTGASSSETDPLLGNRQHSMFKRIYYRTMAFFMFQPEGKGMENYGVTMMLIVYELMTIFFALYQIRFWIILAFRLGLLATINIPLMYVLGAKHSPLSYLTGWSYEQVNVFHRLCGAICFFLVIPHLIIFACYFRFDYLLTHLWSVAGIIAGIAFIAIGFSSSLKFRESFYELFYVVHIVGFLVSIPAVYLHYPTARPYAVAAGLSVLYDRLTRLLLDYRIMKCIIRPASGETVIMDIPFSPGPKDGTGGFFGRPFAWTTGQHIYITVIGCGTFESHPYTIASTMKCSKYLRLIIRARDGFSRRLLELAESKHGLDENEPVQQWCILHGPYGVHPPEMPSSASPPRNNTKLILVAGGAGVAFTYPLYQEYHLANKLLESQTKLVGQSSPSKFDINFLWVLPHSSFSEWLVEHGETVVDTTKMDIWATREKGRPDINQLILGYISKANGVSSSEDHCWVAACGPDPLLREVRNAVANLRGQGMSNVHYYAERFGW
SIO_010081: AWJ20_2162
subclass of: SO_0000673
so part of: AWJ20_2162
location: complement(559225..561030)
location: region:559225-561030:-1
so has part: feature:559225-561030:-1:exon

XP_018737041.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:559225-561030:-1:exon

AWJ20_2163
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: COG6
locus tag: AWJ20_2163
so part of: sequence
location: <561745..>563682
location: region:561745-563682:1
so has part: feature:561745-563682:1:exon
subclass of: SO_0000010

30034044
type: Gene
SIO_000068: ncbigene

position:561745:1
position: 561745
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:563682:1
position: 563682
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:561745-563682:1:exon

AWJ20_2163
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: COG6
locus tag: AWJ20_2163
product: Cog6p
transcript id: XM_018879093.1
SIO_010081: AWJ20_2163
subclass of: SO_0000673
so part of: AWJ20_2163
location: <561745..>563682
location: region:561745-563682:1
so has part: feature:561745-563682:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:561745-563682:1:exon

AWJ20_2163
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: COG6
locus tag: AWJ20_2163
note: Component of the conserved oligomeric Golgi complex; a cytosolic tethering complex (Cog1p through Cog8p) that functions in protein trafficking to mediate fusion of transport vesicles to Golgi compartments; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0017119 - Golgi transport complex [Evidence IEA]; GO_component: GO:0017119 - Golgi transport complex [Evidence IPI] [PMID 11703943]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 20065092]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IEA]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IGI,IPI] [PMID 11703943]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Cog6p
translation: MSVSLELLSGKEDVSSGANPDNAISQLITNILSTSYNDPSLRQALSVLDTKMEENTAENRRQLRSNIETSVLKSGSTILKDFTKLHQKLSSLGDSIQELNNQYNHMEKVVSQATKDTLLIQKQAEELRSSEETISIKKRLLEAYENNFVLTDQELDILNNGLLASGADEVEQFFQVLQKVNHIHNDCQVLLSADDTSQTGMEIMGQMSAHLDKGYERILIAVENEFKKMVSGQYLQISKSLRRYLTILSSERPNLFDSALNGLIDTRQKNLTNEFIKALTVETSTSKPIDFYAYDILRYVGDIMAWIHSAIVGEQEILETLLLDDKKTLLQKIDKATTSLVKPLRLRIEQVISTEDNLVDIYKVGNVLNFYYSIFIKIFSNESSAIMTAISRLEEACSRQFSQCLQNKIASQKDGLGAVTRPGSSLLRDLQPPEFFSDALADAKAILSSYEASINFTSPPSNQFKQTLHDLIEPYLELCNRVSESLPSVDSEIFVINCFDATKSTLSLFPFVQYKIDQMNNRTDELAEVLEDSQYYKFLSSSGVNSILNADKTLNREKISGNTQLIQELAASLDNFLPAANMESSVLLHRLSSPRLSSSITLRASQRFVDIFQQIKQCLDELYGEEAAVLMPRSVSEVKTLLAIE
SIO_010081: AWJ20_2163
subclass of: SO_0000673
so part of: AWJ20_2163
location: 561745..563682
location: region:561745-563682:1
so has part: feature:561745-563682:1:exon

XP_018737042.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:561745-563682:1:exon

AWJ20_2164
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: DET1
locus tag: AWJ20_2164
so part of: sequence
location: <564464..>565045
location: region:564464-565045:1
so has part: feature:564464-565045:1:exon
subclass of: SO_0000010

30034045
type: Gene
SIO_000068: ncbigene

position:564464:1
position: 564464
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:565045:1
position: 565045
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:564464-565045:1:exon

AWJ20_2164
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: DET1
locus tag: AWJ20_2164
product: acid phosphatase DET1
transcript id: XM_018879094.1
SIO_010081: AWJ20_2164
subclass of: SO_0000673
so part of: AWJ20_2164
location: <564464..>565045
location: region:564464-565045:1
so has part: feature:564464-565045:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:564464-565045:1:exon

AWJ20_2164
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: DET1
locus tag: AWJ20_2164
codon start: 1
product: acid phosphatase DET1
translation: MREQDFGNFQGDSEEMQRIWTARARYGHFFFRIPNGESAADVYDRCAGFNESLFRQFNQPHFPEVLVLVSHGIWARVFLMKWYGWSYEKFESLRNVRHCQFLQMDLCPVKKRYTLMTRLRTWDDTDEEDVREASDGGEIEELEIASNNNISLIDIKKIAAKEKQIMEEYKSARQDSPGPSYHQNDHEKTIDQH
SIO_010081: AWJ20_2164
subclass of: SO_0000673
so part of: AWJ20_2164
location: 564464..565045
location: region:564464-565045:1
so has part: feature:564464-565045:1:exon

XP_018737043.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:564464-565045:1:exon

AWJ20_2165
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: DPH1
locus tag: AWJ20_2165
so part of: sequence
location: complement(<565208..>566482)
location: region:565208-566482:-1
so has part: feature:565208-566482:-1:exon
subclass of: SO_0000010

30034046
type: Gene
SIO_000068: ncbigene

position:565208:-1
position: 565208
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:566482:-1
position: 566482
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:565208-566482:-1:exon

AWJ20_2165
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: DPH1
locus tag: AWJ20_2165
product: Dph1p
transcript id: XM_018879095.1
SIO_010081: AWJ20_2165
subclass of: SO_0000673
so part of: AWJ20_2165
location: complement(<565208..>566482)
location: region:565208-566482:-1
so has part: feature:565208-566482:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:565208-566482:-1:exon

AWJ20_2165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: DPH1
locus tag: AWJ20_2165
inference: similar to AA sequence:KEGG_Orthology:K07561
note: Protein required for synthesis of diphthamide; required along with Dph2p, Kti11p, Jjj3p, and Dph5p; diphthamide is a modified histidine residue of translation elongation factor 2 (Eft1p or Eft2p); may act in a complex with Dph2p and Kti11p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine [Evidence IEA,IEA]; GO_process: GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine [Evidence IMP] [PMID 15485916]
codon start: 1
product: Dph1p
translation: MSEQIGETVPVAPRRKFVGRKKATADAERNGNSNIEDIGAGSLTQSKRGPVRTVNRIPDDILNDEELNQAIKILPKNYNFEIHKTIWHIRKSNAKRVALQMPEGLLLYSCIISDILEQFCGVETVIMGDVTYGACCIDDFTALSLNCDFLVHYAHSCLVPVDVTRMKVLYVFVTIDIDKTHLIATLGKNFAPSSRLALVGTIQFNPTLHAIHDDLLTKHQIITSTPQAMPLSKGEVLGCTSARLSSKEIDAIVYIGDGRFHLESAMIHNPEIPAYKYDPYNREFTIETFDHEEMHSIRRAAIKEAKNAKKVGIILGALGRQGNMGTLDLIEKGFKEKNIETVLVLLSEIFPGKLAQFDDVDCWIQVACPRLSIDWGYAFPRPLLTPYEAMVSLEKDQPWDKAYPMDYYSKDGYGRGKIPQRIVA
SIO_010081: AWJ20_2165
subclass of: SO_0000673
so part of: AWJ20_2165
location: complement(565208..566482)
location: region:565208-566482:-1
so has part: feature:565208-566482:-1:exon

XP_018737044.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:565208-566482:-1:exon

AWJ20_2166
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SHQ1
locus tag: AWJ20_2166
so part of: sequence
location: <566854..>568209
location: region:566854-568209:1
so has part: feature:566854-568209:1:exon
subclass of: SO_0000010

30034047
type: Gene
SIO_000068: ncbigene

position:566854:1
position: 566854
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:568209:1
position: 568209
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:566854-568209:1:exon

AWJ20_2166
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SHQ1
locus tag: AWJ20_2166
product: Shq1p
transcript id: XM_018879096.1
SIO_010081: AWJ20_2166
subclass of: SO_0000673
so part of: AWJ20_2166
location: <566854..>568209
location: region:566854-568209:1
so has part: feature:566854-568209:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:566854-568209:1:exon

AWJ20_2166
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SHQ1
locus tag: AWJ20_2166
inference: similar to AA sequence:KEGG_Orthology:K14764
note: Chaperone protein; required for the assembly of box H/ACA snoRNPs and thus for pre-rRNA processing; functions as an RNA mimic; forms a complex with Naf1p and interacts with H/ACA snoRNP components Nhp2p and Cbf5p; homology with known Hsp90p cochaperones; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 12228251]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 19426738]; GO_process: GO:0000493 - box H/ACA snoRNP assembly [Evidence IMP,IPI] [PMID 12228251]
codon start: 1
product: Shq1p
translation: MITPQFSVDQDDEFIYIKIKAPYIKAQNIEFVVDENVFIFSLHPYYLRLRFPGKIIDDDDRSSANYDLKTSMVSVKLPKEVKGEHFEDLDMITKLLARKNEETTRAAKPTIEEIDTEGGKSGNGDLSVGDSSNEIASATQELDEKNANTKLSSLGEEFDWEIEQTIPAPLTDSEDQKAVMANKYGFDNGYSGLMSMSVMNGNDINDLSDPDKLSPSERAKERTELEIEKFDPDYYLSDLFDNPMIEEIISWTETSDDSLTSQESDRLARLSKKTYLLDSEKQTYIGLVSLLFGSCYDKRINMGDSTVESAWTIGKLSPLISCLDNSFASVQDIMIGCTRRSLCYPLYRSWALSLAVWNDVYHVLKRGKRAVLKELAKLVLMFDIDLYNVYNQILLEDYAVWIQYSSENVIRSLAHEVHKTTISKESMGFDLLEYEEAAKEALADQDMDQVD
SIO_010081: AWJ20_2166
subclass of: SO_0000673
so part of: AWJ20_2166
location: 566854..568209
location: region:566854-568209:1
so has part: feature:566854-568209:1:exon

XP_018737045.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:566854-568209:1:exon

AWJ20_2167
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2167
so part of: sequence
location: <568798..>568871
location: region:568798-568871:1
so has part: feature:568798-568871:1:exon
subclass of: SO_0000663

30034048
type: Gene
SIO_000068: ncbigene

position:568798:1
position: 568798
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:568871:1
position: 568871
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:568798-568871:1:exon

AWJ20_2167
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_2167
product: tRNA-Ala
SIO_010081: AWJ20_2167
subclass of: SO_0000673
so part of: AWJ20_2167
location: <568798..>568871
location: region:568798-568871:1
so has part: feature:568798-568871:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:568798-568871:1:exon

AWJ20_2168
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2168
so part of: sequence
location: complement(<570067..>570158)
location: region:570067-570158:-1
so has part: feature:570067-570158:-1:exon
subclass of: SO_0000663

30034049
type: Gene
SIO_000068: ncbigene

position:570067:-1
position: 570067
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:570158:-1
position: 570158
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:570067-570158:-1:exon

AWJ20_2168
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_2168
product: tRNA-Arg
SIO_010081: AWJ20_2168
subclass of: SO_0000673
so part of: AWJ20_2168
location: complement(<570067..>570158)
location: region:570067-570158:-1
so has part: feature:570067-570158:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:570067-570158:-1:exon

AWJ20_2169
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CDC50
locus tag: AWJ20_2169
so part of: sequence
location: <571177..>572403
location: region:571177-572403:1
so has part: feature:571177-572403:1:exon
subclass of: SO_0000010

30034050
type: Gene
SIO_000068: ncbigene

position:571177:1
position: 571177
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:572403:1
position: 572403
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:571177-572403:1:exon

AWJ20_2169
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CDC50
locus tag: AWJ20_2169
product: aminophospholipid translocase regulatory protein CDC50
transcript id: XM_018879097.1
SIO_010081: AWJ20_2169
subclass of: SO_0000673
so part of: AWJ20_2169
location: <571177..>572403
location: region:571177-572403:1
so has part: feature:571177-572403:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:571177-572403:1:exon

AWJ20_2169
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CDC50
locus tag: AWJ20_2169
note: Endosomal protein that interacts with phospholipid flippase Drs2p; interaction with Cdc50p is essential for Drs2p catalytic activity; mutations affect cell polarity and polarized growth; similar to Lem3p; CDC50 has a paralog, YNR048W, that arose from the whole genome duplication; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031902 - late endosome membrane [Evidence IEA]; GO_component: GO:0031902 - late endosome membrane [Evidence IDA] [PMID 12589066]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 15090616]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IGI] [PMID 15090616]; GO_process: GO:0051666 - actin cortical patch localization [Evidence IGI] [PMID 16195350]; GO_process: GO:0006897 - endocytosis [Evidence IGI] [PMID 16195350]; GO_process: GO:0006886 - intracellular protein transport [Evidence IMP] [PMID 16956384]; GO_process: GO:0045332 - phospholipid translocation [Evidence IGI] [PMID 15090616]
codon start: 1
product: aminophospholipid translocase regulatory protein CDC50
translation: MDSDTDSIDRPVETKQKSRRPPNTAFRQQRLKAWQPILTPKTVLPLFFCIAIIFAPIGGLLLYASNQVQEIVIDYSYCSQQAPTDNFANIPSRFVSSQTFSGGKQPANPPQWKLQVNHDTTPGADNATCFLRFDVPTEMGNPIFMFYRLTNFFQNHRRYVQSFNEDQLNGKAVSASSLKSPDDCKPLTLAPDGRPYYPCGLIANSWFNDSFSSPVLLNAAGSSRDNETYVMTDIGIAWSTDRNRFKKSQYKNDEVVPPPNWIKRYPNGYNDDTPIPDISTWESFQNWMRTAGLPTFSKLALRNDTAPLGTGTYQVAIGLNFEVLEFNGSKSLVLSTRTVIGGRNPFLGIAYLCVAGLCFVLGILFLIKHLIKPRKLGDHSYLSWNQEPAAAGQATGTDQGNLQQRRHI
SIO_010081: AWJ20_2169
subclass of: SO_0000673
so part of: AWJ20_2169
location: 571177..572403
location: region:571177-572403:1
so has part: feature:571177-572403:1:exon

XP_018737046.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:571177-572403:1:exon

AWJ20_2170
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ERG6
locus tag: AWJ20_2170
so part of: sequence
location: <573306..>574433
location: region:573306-574433:1
so has part: feature:573306-574433:1:exon
subclass of: SO_0000010

30034052
type: Gene
SIO_000068: ncbigene

position:573306:1
position: 573306
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:574433:1
position: 574433
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:573306-574433:1:exon

AWJ20_2170
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ERG6
locus tag: AWJ20_2170
product: sterol 24-C-methyltransferase
transcript id: XM_018879099.1
SIO_010081: AWJ20_2170
subclass of: SO_0000673
so part of: AWJ20_2170
location: <573306..>574433
location: region:573306-574433:1
so has part: feature:573306-574433:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:573306-574433:1:exon

AWJ20_2170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ERG6
locus tag: AWJ20_2170
inference: similar to AA sequence:KEGG_Orthology:K00559
note: Delta(24)-sterol C-methyltransferase; converts zymosterol to fecosterol in the ergosterol biosynthetic pathway by methylating position C-24; localized to lipid particles, the plasma membrane-associated endoplasmic reticulum, and the mitochondrial outer membrane; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11298754]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 9450962]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 10515935]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0003838 - sterol 24-C-methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0003838 - sterol 24-C-methyltransferase activity [Evidence IDA] [PMID 18563465]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 2677674]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 6363386]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA,IEA]
codon start: 1
product: sterol 24-C-methyltransferase
translation: MSTAKLAPKDFKADAEFAKAMHGSGERGGFTAVLSKNRDAQQAAVDGYFKHWDNKGPKEETEEDKQARLDDYSSLTKHYYNLVTDFYEYGWGSSFHFSRYYPGEAFKQATARHEHYLALKMGINENMKVLDVGCGVGGPAREIHRFTGAEVVGLNNNDYQISRGNAYAKKFGLENKLSFVKGDFMQMDFPDNSFDAVYAIEATVHAPDLAGVYGEIYRVLKPGGTFGVYEWVLTDNYDESNARHREIAYGIEIGDGIPKMFKSEVAEAALKKVGFEIVHQQDMADVGDKIPWYYPLTGDWKYIQTLGDFFTFCRTSKFGRMFTMEATGLLEKVGVAPKGSKKVTIALEEAAVHLVNGAKEGLFTPMMLYVCKKAE
SIO_010081: AWJ20_2170
subclass of: SO_0000673
so part of: AWJ20_2170
location: 573306..574433
location: region:573306-574433:1
so has part: feature:573306-574433:1:exon

XP_018737047.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:573306-574433:1:exon

AWJ20_2171
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: HXT6
locus tag: AWJ20_2171
so part of: sequence
location: <575960..>577597
location: region:575960-577597:1
so has part: feature:575960-577597:1:exon
subclass of: SO_0000010

30034053
type: Gene
SIO_000068: ncbigene

position:575960:1
position: 575960
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:577597:1
position: 577597
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:575960-577597:1:exon

AWJ20_2171
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: HXT6
locus tag: AWJ20_2171
product: hexose transporter HXT6
transcript id: XM_018879100.1
SIO_010081: AWJ20_2171
subclass of: SO_0000673
so part of: AWJ20_2171
location: <575960..>577597
location: region:575960-577597:1
so has part: feature:575960-577597:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:575960-577597:1:exon

AWJ20_2171
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: HXT6
locus tag: AWJ20_2171
inference: similar to AA sequence:KEGG_Orthology:K08139
codon start: 1
product: hexose transporter HXT6
translation: MSEPDNNSLSIKEQPSDDEASSHGPKPVTAKPPLSSYFLVSMLCMFAAMGGFIFGYDTGTISGYVNMPVFLEKLGSTDANGVHYLSKVRSGLLIGIFSIGACIGGIFLSRLGDMYGRKIGVWVGTGVYIVGVLIQVTTYNAWYQFLIGRLIGGMGVGTIAVLVPMFQSEVAPQEIRGTLVSSYQLMITLGIFIGYIVCYATNTRPDATSYKIPLSLGFVWSVILIVGLIFLPESPRYLMSKDRNEEAQKIMCWINRRDPNDPLIVETVANVAAAIEHERNAGKAKWTEVITGKPRVGYRLMVGVMVLALQQLVGANYFFYFGTTIFKGIGMNNSYLASIIFGAVNFGSTFFGLYFVERFGRRNVLLYGAAGMFIFFVIYASMGAKALYPNGSDNDANVQVGKAMIFVTCGYIFCFATTWAPCAFVLVSELFPIRTRSKGMSLGLGANWLANFLLSFFTPFITGAIHFYYGFVFAGCNLFAIVFVYFFVHETKGLSLEQIDQLFVSGVMPWRSSGWVAPAIVDPSTYNEEAPKDTHPNAIHDEHIV
SIO_010081: AWJ20_2171
subclass of: SO_0000673
so part of: AWJ20_2171
location: 575960..577597
location: region:575960-577597:1
so has part: feature:575960-577597:1:exon

XP_018737048.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:575960-577597:1:exon

AWJ20_2172
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: AGC1
locus tag: AWJ20_2172
so part of: sequence
location: <578598..>579479
location: region:578598-579479:1
so has part: feature:578598-579479:1:exon
subclass of: SO_0000010

30034054
type: Gene
SIO_000068: ncbigene

position:578598:1
position: 578598
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:579479:1
position: 579479
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:578598-579479:1:exon

AWJ20_2172
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: AGC1
locus tag: AWJ20_2172
product: Agc1p
transcript id: XM_018879101.1
SIO_010081: AWJ20_2172
subclass of: SO_0000673
so part of: AWJ20_2172
location: <578598..>579479
location: region:578598-579479:1
so has part: feature:578598-579479:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:578598-579479:1:exon

AWJ20_2172
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: AGC1
locus tag: AWJ20_2172
note: Mitochondrial amino acid transporter; acts both as a glutamate uniporter and as an aspartate-glutamate exchanger; involved in nitrogen metabolism and nitrogen compound biosynthesis; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence ISS] [PMID 10930523]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015183 - L-aspartate transmembrane transporter activity [Evidence IDA] [PMID 14622413]; GO_function: GO:0005313 - L-glutamate transmembrane transporter activity [Evidence IDA] [PMID 14622413]; GO_function: GO:0015297 - antiporter activity [Evidence IDA] [PMID 14622413]; GO_function: GO:0015292 - uniporter activity [Evidence IDA] [PMID 14622413]; GO_process: GO:0015813 - L-glutamate transport [Evidence IDA] [PMID 14622413]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0015810 - aspartate transport [Evidence IDA] [PMID 14622413]; GO_process: GO:0044271 - cellular nitrogen compound biosynthetic process [Evidence IMP] [PMID 14622413]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Agc1p
translation: MALETIAASVLGAVGSKLVFYPLDTIRTLQQTSTNFSYFLPIRSYFRGLGASLSLSAPAFTVYMVAYRETKRELAPYLGEAALANYIVSGAVSQLTSSFIWTPMEVLKARMQIHQGPKISTLNLASSIYRMDGIKGFFRGYWMGVAVFLPHSVVWWTTYEYSKELLSKEDQPLKTIDYGIASASASSSAALASNFLDVIKTRQQVAVSEEIARIRPDDRQGVFKVARNLIKEVGFFRAFFKGLHIRLLHSLPSSALAMMIVESINPDRLRGTAPAKFTNDELLPPPALEEIEA
SIO_010081: AWJ20_2172
subclass of: SO_0000673
so part of: AWJ20_2172
location: 578598..579479
location: region:578598-579479:1
so has part: feature:578598-579479:1:exon

XP_018737049.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:578598-579479:1:exon

AWJ20_2173
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: FAA2
locus tag: AWJ20_2173
so part of: sequence
location: complement(<579704..>581923)
location: region:579704-581923:-1
so has part: feature:579704-581923:-1:exon
subclass of: SO_0000010

30034055
type: Gene
SIO_000068: ncbigene

position:579704:-1
position: 579704
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:581923:-1
position: 581923
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:579704-581923:-1:exon

AWJ20_2173
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: FAA2
locus tag: AWJ20_2173
product: medium-chain fatty acid-CoA ligase FAA2
transcript id: XM_018879102.1
SIO_010081: AWJ20_2173
subclass of: SO_0000673
so part of: AWJ20_2173
location: complement(<579704..>581923)
location: region:579704-581923:-1
so has part: feature:579704-581923:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:579704-581923:-1:exon

AWJ20_2173
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: FAA2
locus tag: AWJ20_2173
inference: similar to AA sequence:KEGG_Orthology:K01897
note: Medium chain fatty acyl-CoA synthetase; activates imported fatty acids; accepts a wide range of fatty acid chain lengths with a preference for medium chains, C9:0-C13:0; localized to the peroxisome; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 8670886]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004467 - long-chain fatty acid-CoA ligase activity [Evidence IEA]; GO_function: GO:0004467 - long-chain fatty acid-CoA ligase activity [Evidence IDA] [PMID 8206942]; GO_function: GO:0031956 - medium-chain fatty acid-CoA ligase activity [Evidence IDA] [PMID 8206942]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0031957 - very long-chain fatty acid-CoA ligase activity [Evidence IGI] [PMID 9988704]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0001676 - long-chain fatty acid metabolic process [Evidence IGI,IMP] [PMID 7962057]; GO_process: GO:0008152 - metabolic process [Evidence IEA]
codon start: 1
product: medium-chain fatty acid-CoA ligase FAA2
translation: MASQNENGFTEETLRRIWKYNFVLPDGINENTSPFDTTLSSHAAQGKPQALPVPGTKQPGYSEIYRNQCSPDKVISGYHPSVKTFYDAFLTVATTYPKRDCIADREYDQKLKKWGNYKWLSFEETAKRRTKIAAGLVHAVRKATGFDPADKKYIVSVYAPNCVNWILTDLACQTQSLPTVCLYDTLGPHTSEYILNLCESPIVVCSLANVPRILSLKHKLPHVKVIVSTNSFESVPGQFEPAGQSKKELLNVWANDQGVALYSLNEIEALGADFPIADRPPKPEDIYAINFTSGTTGNPKGAILTHANVVAAIAMGRHCLGKNFKPDQVATVYSFLPLAHIYERIAMCIIMSLGHRQAYPHGPVTEIFEDIQILKPTNVNMVPRVLNRVAAALRASTIEAPGLAGAISRKAHEAKLNHLYATGSPNHPIWDFLWSRKIRKKLGFDNLNSLVSGSAPLSKATVEFLKVALAAELLQGYGLTESMSGISVSQPEEPLAGSCGAVAPTTELRFRDVPELGYTANDKPFPRGEIMLRGPQMFTGYYKNNEKTLEAFDEDGWFHTGDVGTVDKLGRIFIIDRVKNFFKLSQGEYVAAEKIENTYLANSSLITQIFVHGDSTESYLVAIAGINPDSYATLANKVLHKRIRPTDLAALAATYDVPEVKAAFIKALNGSTGNLLQGFEKIKNVLLRFEPLTPENDTLTPTLKIKRPAAVKLFKAEIDAMYKEGPLSDSGALNSTPKL
SIO_010081: AWJ20_2173
subclass of: SO_0000673
so part of: AWJ20_2173
location: complement(579704..581923)
location: region:579704-581923:-1
so has part: feature:579704-581923:-1:exon

XP_018737050.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:579704-581923:-1:exon

AWJ20_2174
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: NHP6B
locus tag: AWJ20_2174
so part of: sequence
location: complement(<582911..>583297)
location: region:582911-583297:-1
so has part: feature:582911-583297:-1:exon
subclass of: SO_0000010

30034056
type: Gene
SIO_000068: ncbigene

position:582911:-1
position: 582911
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:583297:-1
position: 583297
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:582911-583297:-1:exon

AWJ20_2174
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: NHP6B
locus tag: AWJ20_2174
product: Nhp6bp
transcript id: XM_018879103.1
SIO_010081: AWJ20_2174
subclass of: SO_0000673
so part of: AWJ20_2174
location: complement(<582911..>583297)
location: region:582911-583297:-1
so has part: feature:582911-583297:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:582911-583297:-1:exon

AWJ20_2174
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: NHP6B
locus tag: AWJ20_2174
note: High-mobility group (HMG) protein; binds to and remodels nucleosomes; involved in recruiting FACT and other chromatin remodelling complexes to the chromosomes; functionally redundant with Nhp6Ap; required for transcriptional initiation fidelity of some tRNA genes; homologous to mammalian HMGB1 and HMGB2; NHP6B has a paralog, NHP6A, that arose from the whole genome duplication; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 3169249]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0008301 - DNA binding, bending [Evidence IDA] [PMID 7721780]; GO_function: GO:0031491 - nucleosome binding [Evidence ISS] [PMID 11432837]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0070898 - RNA polymerase III transcriptional preinitiation complex assembly [Evidence IGI] [PMID 11287614]; GO_process: GO:0070898 - RNA polymerase III transcriptional preinitiation complex assembly [Evidence IDA] [PMID 17178828]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IGI] [PMID 14739928]; GO_process: GO:0001195 - maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase III promoter [Evidence IDA] [PMID 16407207]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IGI] [PMID 8946917]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]
codon start: 1
product: Nhp6bp
translation: MFGQLTRGAMALPAVRPLALATSAVSMRTPGLIANAHSKASGDDKVKRKKKDPNAPKRASSAYMFFVKANRDEVLSENPGITFGETGRALGKKWNNLSSAEKAPYEEKANEDKIRYQEAKAAYDASKA
SIO_010081: AWJ20_2174
subclass of: SO_0000673
so part of: AWJ20_2174
location: complement(582911..583297)
location: region:582911-583297:-1
so has part: feature:582911-583297:-1:exon

XP_018737051.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:582911-583297:-1:exon

AWJ20_2175
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ENV9
locus tag: AWJ20_2175
so part of: sequence
location: complement(<583770..>584735)
location: region:583770-584735:-1
so has part: feature:583770-584735:-1:exon
subclass of: SO_0000010

30034057
type: Gene
SIO_000068: ncbigene

position:583770:-1
position: 583770
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:584735:-1
position: 584735
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:583770-584735:-1:exon

AWJ20_2175
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ENV9
locus tag: AWJ20_2175
product: Env9p
transcript id: XM_018879104.1
SIO_010081: AWJ20_2175
subclass of: SO_0000673
so part of: AWJ20_2175
location: complement(<583770..>584735)
location: region:583770-584735:-1
so has part: feature:583770-584735:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:583770-584735:-1:exon

AWJ20_2175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ENV9
locus tag: AWJ20_2175
note: Protein proposed to be involved in vacuolar functions; mutant shows defect in CPY processing and defects in vacuolar morphology; has similarity to oxidoreductases, found in lipid particles; required for replication of Brome mosaic virus in S. cerevisiae, a model system for studying replication of positive-strand RNA viruses in their natural hosts; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence ISS] [PMID 8972580]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006624 - vacuolar protein processing [Evidence IMP] [PMID 21912603]; GO_process: GO:0007033 - vacuole organization [Evidence IMP] [PMID 21912603]
codon start: 1
product: Env9p
translation: MTFDSKTSSEEVAQAFSSEIKGKVFLVTGATWGGIGADNARVLSGHGAKLVIVTGRSQSKLDETIGNIKKENPNANIRGLILDLSSFKSIRKAAEEVNNYSENIDVLINNAGVMACPYSKTEDGFELQFGTNHLGHFLFTNLILKKILSSPHPRVVNLSSMGHGLAPIIFGDIGFSDGATYERFHAYGQSKTANVLFSRELSRRYKSQGLVSFSVHPGAIMDTNLGRHMNFDGDINNIGIPKDYWGTDDFYHDMANVRMKNVTQGGATTLVAALDPAIASQSGAYLDDCQIHEDFCRNHAKQPNDAFKLWNLSEELVGQKF
SIO_010081: AWJ20_2175
subclass of: SO_0000673
so part of: AWJ20_2175
location: complement(583770..584735)
location: region:583770-584735:-1
so has part: feature:583770-584735:-1:exon

XP_018737052.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:583770-584735:-1:exon

AWJ20_2176
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: DIP5
locus tag: AWJ20_2176
so part of: sequence
location: complement(<585581..>587191)
location: region:585581-587191:-1
so has part: feature:585581-587191:-1:exon
subclass of: SO_0000010

30034058
type: Gene
SIO_000068: ncbigene

position:585581:-1
position: 585581
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:587191:-1
position: 587191
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:585581-587191:-1:exon

AWJ20_2176
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: DIP5
locus tag: AWJ20_2176
product: Dip5p
transcript id: XM_018879105.1
SIO_010081: AWJ20_2176
subclass of: SO_0000673
so part of: AWJ20_2176
location: complement(<585581..>587191)
location: region:585581-587191:-1
so has part: feature:585581-587191:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:585581-587191:-1:exon

AWJ20_2176
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: DIP5
locus tag: AWJ20_2176
inference: similar to AA sequence:KEGG_Orthology:K16261
note: Dicarboxylic amino acid permease; mediates high-affinity and high-capacity transport of L-glutamate and L-aspartate; also a transporter for Gln, Asn, Ser, Ala, and Gly; relocalizes from plasma membrane to vacuole upon DNA replication stress; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 10654085]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 22842922]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IDA] [PMID 10654085]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IDA] [PMID 10654085]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]
codon start: 1
product: Dip5p
translation: MSEDYGNEKNFKVTIYDDSASDEITVGVFKEDKTRLTKGLKQRHIQMIALVGVIGTGLFLYSGGALQSAGPLGMLLAYLLVGTIVGFNQIAVAEVSAFMPTTGSTIRQLEHFIDPAFGFAFGYLQFWWAVIPSEFVAASVVVSYWSDLNPAIWLTIFIVLAILANSWSIRLYGEIEFFFACLKILLILGLILTGLIIDLGGVKGQPRLGFHYWKHPGVWAEFMKTGAAGRTIGFFSVMNGAVYSFGGLQTVALLAGETQNPRRNIPKAAKRILARVLTFYMLALFIVSLIVPYDNPDISNGSGNASGSPFVVAMKLAGIKVLPSIVNAMVLCSAWSAASGSLVQGSRILFSLAANNQAPKVFLRTNKRGLPWVGLIVTGLFLPLSYMSLSSSSSKVFGYLVNVTSSIILIQWILIASIHFKMNKALDIQGHSRHELPYHFKGGRYLGIISGIGSLLLLLIGGFTIFISWSTSQFVSAYVSIPLFLAFSLFWKLYKKTKWVEADKVDLKSLFLEIENNPEPEEVPLRGWHRLEFLWA
SIO_010081: AWJ20_2176
subclass of: SO_0000673
so part of: AWJ20_2176
location: complement(585581..587191)
location: region:585581-587191:-1
so has part: feature:585581-587191:-1:exon

XP_018737053.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:585581-587191:-1:exon

AWJ20_2177
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RPS23B
locus tag: AWJ20_2177
so part of: sequence
location: <588233..>588670
location: region:588233-588670:1
so has part: feature:588233-588670:1:exon
subclass of: SO_0000010

30034059
type: Gene
SIO_000068: ncbigene

position:588233:1
position: 588233
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:588670:1
position: 588670
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:588233-588670:1:exon

AWJ20_2177
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RPS23B
locus tag: AWJ20_2177
product: ribosomal 40S subunit protein S23B
transcript id: XM_018879106.1
SIO_010081: AWJ20_2177
subclass of: SO_0000673
so part of: AWJ20_2177
location: <588233..>588670
location: region:588233-588670:1
so has part: feature:588233-588670:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:588233-588670:1:exon

AWJ20_2177
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RPS23B
locus tag: AWJ20_2177
inference: similar to AA sequence:KEGG_Orthology:K02973
note: Ribosomal protein 28 (rp28) of the small (40S) ribosomal subunit; required for translational accuracy; homologous to mammalian ribosomal protein S23 and bacterial S12; RPS23B has a paralog, RPS23A, that arose from the whole genome duplication; deletion of both RPS23A and RPS23B is lethal; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 6814480]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_component: GO:0015935 - small ribosomal subunit [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 6814480]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IGI] [PMID 16246728]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence IGI,IMP] [PMID 8415737]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence IGI,IMP] [PMID 8950190]; GO_process: GO:0006412 - translation [Evidence IEA]
codon start: 1
product: ribosomal 40S subunit protein S23B
translation: MGKGKPRGLNSARKLRTTRRDNRWADLSYKKRLLGTAFKSSPFGGSSHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS
SIO_010081: AWJ20_2177
subclass of: SO_0000673
so part of: AWJ20_2177
location: 588233..588670
location: region:588233-588670:1
so has part: feature:588233-588670:1:exon

XP_018737054.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:588233-588670:1:exon

AWJ20_2178
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RRP9
locus tag: AWJ20_2178
so part of: sequence
location: complement(<589164..>590843)
location: region:589164-590843:-1
so has part: feature:589164-590843:-1:exon
subclass of: SO_0000010

30034060
type: Gene
SIO_000068: ncbigene

position:589164:-1
position: 589164
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:590843:-1
position: 590843
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:589164-590843:-1:exon

AWJ20_2178
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RRP9
locus tag: AWJ20_2178
product: Rrp9p
transcript id: XM_018879107.1
SIO_010081: AWJ20_2178
subclass of: SO_0000673
so part of: AWJ20_2178
location: complement(<589164..>590843)
location: region:589164-590843:-1
so has part: feature:589164-590843:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:589164-590843:-1:exon

AWJ20_2178
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RRP9
locus tag: AWJ20_2178
inference: similar to AA sequence:KEGG_Orthology:K14793
note: Protein involved in pre-rRNA processing; associated with U3 snRNP; component of small ribosomal subunit (SSU) processosome; ortholog of the human U3-55k protein; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0031428 - box C/D snoRNP complex [Evidence IDA] [PMID 11081632]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12150911]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0030515 - snoRNA binding [Evidence IPI] [PMID 11105764]; GO_process: GO:0000154 - rRNA modification [Evidence TAS] [PMID 10690410]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence TAS] [PMID 10690410]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]
codon start: 1
product: Rrp9p
translation: MVDSFFVNPTKRRKTASSSGGSGSNKRAATSNGIRKNGPSRVNGRSNNKSQNGRASDDENNDDEGLESDDLDSDVSMEDDDNVNSDDSEDEFGNETEADKRRRLAKQYLENIQTELTEAGDDAFDAKDLDREIISRRLKEDVAETVGKVYRFIGDSFDFKSVSPKNGTAQLIQAKAYGITSVATNYPFAYTTSKDLTLTKWDISNAKKPRVVRFVKGNHRVKTPEERETFKGHFDEILCVAASSDGKYVVTGGRDRRLVVWSAESLAPIKVFETRDRKGVVMGLVFRRNTNELYASCADLKVRTFNLDQLAQVEILFGHQDEVADIAALGQERCVSVGSRDRTAIIWKIAEETRLTFRGADTVSGSTSNKSGSKSKVNDSGYDAYAPTKKILEGSIDCCSMIDDQLFVTGSDNGNVSLWSVNKKKPLFVLREAHGRDESLLPDQVSAETAAGVSVPPPPALPRYITSIYAIPFSDTFFTGSWDGQIRAWKLSADLRTFEPLATVSGASGIVNRISVVETGSKGKETFTIVGAVAKELRLGRWLKVKGKNGLFTATIARK
SIO_010081: AWJ20_2178
subclass of: SO_0000673
so part of: AWJ20_2178
location: complement(589164..590843)
location: region:589164-590843:-1
so has part: feature:589164-590843:-1:exon

XP_018737055.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:589164-590843:-1:exon

AWJ20_2179
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2179
so part of: sequence
location: complement(<593497..>595758)
location: region:593497-595758:-1
so has part: feature:593497-595758:-1:exon
subclass of: SO_0000010

30034061
type: Gene
SIO_000068: ncbigene

position:593497:-1
position: 593497
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:595758:-1
position: 595758
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:593497-595758:-1:exon

AWJ20_2179
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2179
product: hypothetical protein
transcript id: XM_018879108.1
SIO_010081: AWJ20_2179
subclass of: SO_0000673
so part of: AWJ20_2179
location: complement(<593497..>595758)
location: region:593497-595758:-1
so has part: feature:593497-595758:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:593497-595758:-1:exon

AWJ20_2179
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2179
codon start: 1
product: hypothetical protein
translation: MQAARNLEKRFSLDSISSRIIARHWDQEQLDQLDQQQQNEPPFDTSQPTQSHLKYQRPRPRQRQRRTQDLGQSLRDQNQDPSHILTHILDQNSPESSQQQEQQETQNSLSRNYNCHCTNSPCDCFVLLTKKIDMLQKDLNVAVEVGQALLKTHEDYVAESQAEAAQMEESINSMTLNLQSVMRENDKLLVNNSELISQLHENSKALQESDSKIEKLSHELNSSKDRIIRLNTFMLQAKELEAQISSLEMIRQGLQDDLQQTEREKQLAELKWRKAERLLEKLTDQYEKLEEESVQSQKPTASRLAFLNDQSIKKTISDLQKNVLGANERANIPATSTPVKYKHETWSANTSSQQPQFPMLISPPSSGKRGRSHLRNSSKSTLNGQPLGPLYEDESFREFFGDESADSSFPYYSSNQHDIKREYVLSSPLHSRQNSCLANEYRTASDNYGSASGKDSPLDSSSHEPIRNTVEFNNGLPTPNDTLEHEIDLPETQTSSDDINHEERMDESINQDSDRSVTSNTESVESTPAGPSSPTDSIKSSASTATSIPSSALTPISPRYEPMLRRAASHESIFSVFVETHLHNGHSRNSSTTTAAIDLSPALGPFSHKGLPSFYSQRTGVALAEISTEMSLAPPSKLLNPEYSNSQRSRQLLFAAISNNTKQAVKIPARRNSIESSTTSDLSGSSDQDRPSSSWASLFSRLRNPTSTTNTTPTSTPRSPADTLIAKILADPIQTHVLASPSDVSEAMNSTIL
SIO_010081: AWJ20_2179
subclass of: SO_0000673
so part of: AWJ20_2179
location: complement(593497..595758)
location: region:593497-595758:-1
so has part: feature:593497-595758:-1:exon

XP_018737056.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:593497-595758:-1:exon

AWJ20_2180
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ALK2
locus tag: AWJ20_2180
so part of: sequence
location: <598692..>602078
location: region:598692-602078:1
so has part: feature:598692-602078:1:exon
subclass of: SO_0000010

30034063
type: Gene
SIO_000068: ncbigene

position:598692:1
position: 598692
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:602078:1
position: 602078
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:598692-602078:1:exon

AWJ20_2180
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ALK2
locus tag: AWJ20_2180
product: protein kinase ALK2
transcript id: XM_018879110.1
SIO_010081: AWJ20_2180
subclass of: SO_0000673
so part of: AWJ20_2180
location: <598692..>602078
location: region:598692-602078:1
so has part: feature:598692-602078:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:598692-602078:1:exon

AWJ20_2180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ALK2
locus tag: AWJ20_2180
inference: similar to AA sequence:KEGG_Orthology:K16315
codon start: 1
product: protein kinase ALK2
translation: MDTAVETKQRKKLFGHNRSGSLFQSFSSTTSKTYGKKKANPTLAKAQAGFQQWSQIRAADASNANIINNSQASGPGPVLASGDDLEDDDADIQNDSRKEVHATTAPIGLGIDSLIPLEIDTSNKENISWEAETTEVLRKIRPTSKSSLRGINVNGVNPGGAGSVTGSATTSATASINGEIAEDSPKQNRLSRLVRTISGLSTTSTSSKDTIDGTKLNRNSTATVSRVSHRSSLSTIHRFSIGSTSSSTDATPVKPQSNRYSALLDVGNLRRSSVANNLSQILNNSDLDTDEEDEEDDMDEGTGKRAIPGIVVPFENDLEGSKKNRESWNDNYSKQRTRPSSEYRDVSHDVGLLNIPSNYPPMASSNRMSYMSLRKPAPPALTISSTSPQSSTVTSPALSHYSNVSIPSISSGSGHSPLLSYKKETGSIKHKRVTKDSISGPTSLVNHQEFFAPRPSFESDFDSYSNGRSASQPANTISGGPSSISTSVSSTGTSNSSASRTSRYGSSFLTSITPHSSLLSLRSTKAKERSGTSTSDFVPNKSPTSAASISSSINLPASSSNTTAKSSTKSKHAHKLSLVNGFTKKPSIQDMKRYISFSPSSSSLFRNASNSPTNGSATMTKSPSILGDSFDKTMISLPIPVDGSREKLRNKLRASTSLLSLARSDTSGSLTVGIPIAEYEQSQLQTLLSLCSCAEIEDFSDYIDHGYDNLEKLAEASFSEVFIQRSSNSSRILKIIPFGNEELDQLPVQDIIQELTIARMLMPLDGYVDVLDSTIVRGTYPQRLLELWDDYDQQKRSENYRPDFFKHDQMYCIVVMANAGTDLEHFDLSSWQDAESIFWQVVQSLALAEEKFEFEHRDLHWGNVVIEEVSKGVSQTTDLLNNLSLEDEQRNTSKRTNPKDKYGFRYDEDEADGEIDDDLYEEKELKVTLIDYTLSRAMTDDGTVVFTRLDHPDFFRGKGDYQFDIYRFMRTFIGGASASYLSPNPANHATQLASTSPGLGHPSPDLAKLNQQTNWSLFCPRTNILWLHYLVDKLLNAKSLPRVSTTRSGRLSFGGGSNGSLRDAYLKGNNVSHNDEARACAALEIIHKTLDPRKKRFGGKKHNSPMSFQDFSSARDVLRWGVRNKYVS
SIO_010081: AWJ20_2180
subclass of: SO_0000673
so part of: AWJ20_2180
location: 598692..602078
location: region:598692-602078:1
so has part: feature:598692-602078:1:exon

XP_018737057.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:598692-602078:1:exon

AWJ20_2181
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CKB1
locus tag: AWJ20_2181
so part of: sequence
location: <605132..>606229
location: region:605132-606229:1
so has part: feature:605132-606229:1:exon
subclass of: SO_0000010

30034064
type: Gene
SIO_000068: ncbigene

position:605132:1
position: 605132
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:606229:1
position: 606229
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:605132-606229:1:exon

AWJ20_2181
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CKB1
locus tag: AWJ20_2181
product: casein kinase 2 regulatory subunit CKB1
transcript id: XM_018879111.1
SIO_010081: AWJ20_2181
subclass of: SO_0000673
so part of: AWJ20_2181
location: <605132..>606229
location: region:605132-606229:1
so has part: feature:605132-606229:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:605132-606229:1:exon

AWJ20_2181
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CKB1
locus tag: AWJ20_2181
inference: similar to AA sequence:KEGG_Orthology:K03115
note: Beta regulatory subunit of casein kinase 2 (CK2); a Ser/Thr protein kinase with roles in cell growth and proliferation; CK2, comprised of CKA1, CKA2, CKB1 and CKB2, has many substrates including transcription factors and all RNA polymerases; GO_component: GO:0034456 - UTP-C complex [Evidence IDA] [PMID 17515605]; GO_component: GO:0005956 - protein kinase CK2 complex [Evidence IEA]; GO_component: GO:0005956 - protein kinase CK2 complex [Evidence IDA] [PMID 8135547]; GO_function: GO:0019887 - protein kinase regulator activity [Evidence IEA]; GO_function: GO:0019887 - protein kinase regulator activity [Evidence IMP] [PMID 11827175]; GO_function: GO:0019887 - protein kinase regulator activity [Evidence IPI] [PMID 8135547]; GO_function: GO:0030291 - protein serine/threonine kinase inhibitor activity [Evidence IDA] [PMID 18265947]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IDA] [PMID 11551505]; GO_process: GO:0006468 - protein phosphorylation [Evidence IMP] [PMID 16607517]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 16952051]; GO_process: GO:0045859 - regulation of protein kinase activity [Evidence IEA]; GO_process: GO:0006356 - regulation of transcription from RNA polymerase I promoter [Evidence IDA] [PMID 11551505]; GO_process: GO:0006359 - regulation of transcription from RNA polymerase III promoter [Evidence IDA] [PMID 11551505]
codon start: 1
product: casein kinase 2 regulatory subunit CKB1
translation: MSNLRDTPEKQPQRQQQATAAAAAAFRQVDRPGASNASASSLASSTKNASNVKREPTLSSTQQPPSNIEEDEEEEEEEEEIQDGTAGATGAAGDKYNFMFDESDDASSGSLDFESWIKSFCSIVGHEFFAEVSEEFIEDDFNLTGLGPLIPHYKEALELILDLEPETPPKLPTIPIIEQSAEQLYGMIHARFILSRPGLQIMAQKFHYQQFGTCPRYFCHGTGLLPVGRHDMPGFETVRLYCPCCMDIYVPPNSRFLSIDGAFFGTSFPGLFLKAYPEIEKECARRRKQQGQFELTIYGFKIAESSKSGSRMKWLRQVPVNDSELDEHVSEIQDGARSISSSSHNNPTNTNDNESMMSISMNGET
SIO_010081: AWJ20_2181
subclass of: SO_0000673
so part of: AWJ20_2181
location: 605132..606229
location: region:605132-606229:1
so has part: feature:605132-606229:1:exon

XP_018737058.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:605132-606229:1:exon

AWJ20_2182
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: JAC1
locus tag: AWJ20_2182
so part of: sequence
location: complement(<606784..>607383)
location: region:606784-607383:-1
so has part: feature:606784-607383:-1:exon
subclass of: SO_0000010

30034065
type: Gene
SIO_000068: ncbigene

position:606784:-1
position: 606784
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:607383:-1
position: 607383
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:606784-607383:-1:exon

AWJ20_2182
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: JAC1
locus tag: AWJ20_2182
product: Jac1p
transcript id: XM_018879112.1
SIO_010081: AWJ20_2182
subclass of: SO_0000673
so part of: AWJ20_2182
location: complement(<606784..>607383)
location: region:606784-607383:-1
so has part: feature:606784-607383:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:606784-607383:-1:exon

AWJ20_2182
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: JAC1
locus tag: AWJ20_2182
inference: similar to AA sequence:KEGG_Orthology:K04082
note: Specialized J-protein that functions in Fe-S cluster biogenesis; functions with Hsp70 in Fe-S cluster biogenesis in mitochondria; involved in iron metabolism; contains a J domain typical to J-type chaperones; localizes to the mitochondrial matrix; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11278728]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051087 - chaperone binding [Evidence IEA]; GO_function: GO:0051087 - chaperone binding [Evidence IMP] [PMID 11278728]; GO_function: GO:0051087 - chaperone binding [Evidence ISS] [PMID 9813017]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 9813017]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 11278728]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0051259 - protein oligomerization [Evidence IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]
codon start: 1
product: Jac1p
translation: MRTVSVSTRLLQTFTKRFATKAGGESGYYSFFPQSFPNGPPPKGPFEINAKQLKQEFLKLQAQTHPDKAGSVDPNNELRKKFELRSSQLNIAYKSLLNPLDRAQHLLLLRGIDALSERDSLQDEDLLMDVLMAREAIADSNSREDLLSLQQENDKRLSESETALISAFSEDDLESAKNETIRLSYWQNIKNQISDALNQ
SIO_010081: AWJ20_2182
subclass of: SO_0000673
so part of: AWJ20_2182
location: complement(606784..607383)
location: region:606784-607383:-1
so has part: feature:606784-607383:-1:exon

XP_018737059.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:606784-607383:-1:exon

AWJ20_2183
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: HXT13
locus tag: AWJ20_2183
so part of: sequence
location: complement(<609663..>611222)
location: region:609663-611222:-1
so has part: feature:609663-611222:-1:exon
subclass of: SO_0000010

30034066
type: Gene
SIO_000068: ncbigene

position:609663:-1
position: 609663
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:611222:-1
position: 611222
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:609663-611222:-1:exon

AWJ20_2183
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: HXT13
locus tag: AWJ20_2183
product: hexose transporter HXT13
transcript id: XM_018879113.1
SIO_010081: AWJ20_2183
subclass of: SO_0000673
so part of: AWJ20_2183
location: complement(<609663..>611222)
location: region:609663-611222:-1
so has part: feature:609663-611222:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:609663-611222:-1:exon

AWJ20_2183
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: HXT13
locus tag: AWJ20_2183
inference: similar to AA sequence:KEGG_Orthology:K08139
codon start: 1
product: hexose transporter HXT13
translation: MTIEEKNEVHMVEDIRPEGETMEDVLPDYGKFAFLRVPHLLRLNLLLLLCMISSTNNGYDGSMLNGLQSMDSWQDTFNHPKGQHLGGLANGMMFGGIATWPILPYITDRWGRKLPIAGGCVLIIVGAIIQAVSNDYAVFLVGRLILGFGSSFCTGCSPLLLAESSYPAHRHVVTAIYNTLWYLGSIIAAWLTLGTSYVTTTWSWRIPCICQGFLPLIQLLMIYWVPESPRYLIDKHRYAEARALLVKHHAGGDVNSKLVDYEMAEISSALELEKIQNETSYLDFLKTKANKHRLFLIIMIPINMQMSGNGLVSYYLNLVLDSIGITDQRQQLYLNGGLQIYNFFWAVFWTFFVESLGRRRLFLISFSGMLVTYIIWTALSGAGTPSNFANKSLANGVLAMIFLYYFCYGIALNGPAVLYYTEILPYQLRAKGLNITQIVTTLTLIYNGFVNPVAMDAIGWKYYIVWCCVIAVELVICYFFYPETKGHTLETVGSVFGEEVHVTSDLGVGLGRENEKPVA
SIO_010081: AWJ20_2183
subclass of: SO_0000673
so part of: AWJ20_2183
location: complement(609663..611222)
location: region:609663-611222:-1
so has part: feature:609663-611222:-1:exon

XP_018737060.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:609663-611222:-1:exon

AWJ20_2184
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2184
so part of: sequence
location: <615264..>616211
location: region:615264-616211:1
so has part: feature:615264-616211:1:exon
subclass of: SO_0000010

30034067
type: Gene
SIO_000068: ncbigene

position:615264:1
position: 615264
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:616211:1
position: 616211
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:615264-616211:1:exon

AWJ20_2184
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2184
product: hypothetical protein
transcript id: XM_018879114.1
SIO_010081: AWJ20_2184
subclass of: SO_0000673
so part of: AWJ20_2184
location: <615264..>616211
location: region:615264-616211:1
so has part: feature:615264-616211:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:615264-616211:1:exon

AWJ20_2184
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2184
codon start: 1
product: hypothetical protein
translation: MTSPKYNCLTQEQVDHFLEKGYVVIHDAFSKEHAAWMLKDVWVRLGLDPNNRESWTKPRIHMPKQRSILVSEFAPKAWDAIKDLLGGDENIADAGKYWNDSLIVNFGRDQFEPHLVSGDPKQLDNWHTDGNFFRHFLDSPEQALLVIPIFSDEIKPKGGATYIAPDSIPHIAKLLDDHPEGLLPGKPFNYPELVNKCNEFVEVTGKVGDVVLMHPFMMHSASPNQLRIPRFITNPPVSLKTPFRFDRPLDQLNLVEQKTLKSLGKSSPYHFKPTADRVIFPSEQHDMWIRMQNEEKQRLKDYGTLESFTAIGVKP
SIO_010081: AWJ20_2184
subclass of: SO_0000673
so part of: AWJ20_2184
location: 615264..616211
location: region:615264-616211:1
so has part: feature:615264-616211:1:exon

XP_018737061.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:615264-616211:1:exon

AWJ20_2185
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: YHI9
locus tag: AWJ20_2185
so part of: sequence
location: complement(<616842..>617744)
location: region:616842-617744:-1
so has part: feature:616842-617744:-1:exon
subclass of: SO_0000010

30034068
type: Gene
SIO_000068: ncbigene

position:616842:-1
position: 616842
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:617744:-1
position: 617744
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:616842-617744:-1:exon

AWJ20_2185
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: YHI9
locus tag: AWJ20_2185
product: Yhi9p
transcript id: XM_018879115.1
SIO_010081: AWJ20_2185
subclass of: SO_0000673
so part of: AWJ20_2185
location: complement(<616842..>617744)
location: region:616842-617744:-1
so has part: feature:616842-617744:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:616842-617744:-1:exon

AWJ20_2185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: YHI9
locus tag: AWJ20_2185
note: hypothetical protein; null mutant is defective in unfolded protein response; possibly involved in a membrane regulation metabolic pathway; member of the PhzF superfamily, though most likely not involved in phenazine production; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0030968 - endoplasmic reticulum unfolded protein response [Evidence IMP] [PMID 16582425]
codon start: 1
product: Yhi9p
translation: MTTAPFTTVDVFSDTRFLGNQLAIVELAGENTDLSTDNLQQIAREFNYSETIYIYPPSTANTYPVRIFTPDTELPFAGHPTIGAADHVIGLVTAGTSSATLVPPAGPIPVQKSSDGVVRAHIPHNVHFHKATAKDLPDPVGFSSDPVIAEAERNAPLFSIVKGLSFALIRLPSVEVLSRVKMSSTPLNLAPLLDHEWNSGFVGQLYYVLEDEHTVRARMILLDQFEDPATGSANSALGAYLALTTGKNQNIQVTQGVEIGRRSVIGVEVELDGDKINTLILSGKTVKVTKGDIIVSADKL
SIO_010081: AWJ20_2185
subclass of: SO_0000673
so part of: AWJ20_2185
location: complement(616842..617744)
location: region:616842-617744:-1
so has part: feature:616842-617744:-1:exon

XP_018737062.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:616842-617744:-1:exon

AWJ20_2186
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: HIS6
locus tag: AWJ20_2186
so part of: sequence
location: <618341..>619315
location: region:618341-619315:1
so has part: feature:618341-619315:1:exon
subclass of: SO_0000010

30034069
type: Gene
SIO_000068: ncbigene

position:618341:1
position: 618341
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:619315:1
position: 619315
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:618341-619315:1:exon

AWJ20_2186
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: HIS6
locus tag: AWJ20_2186
product: imidazole-4-carboxamide isomerase HIS6
transcript id: XM_018879116.1
SIO_010081: AWJ20_2186
subclass of: SO_0000673
so part of: AWJ20_2186
location: <618341..>619315
location: region:618341-619315:1
so has part: feature:618341-619315:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:618341-619315:1:exon

AWJ20_2186
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: HIS6
locus tag: AWJ20_2186
inference: similar to AA sequence:KEGG_Orthology:K01814
codon start: 1
product: imidazole-4-carboxamide isomerase HIS6
translation: MLDSSAARGATGSGAEPQPPEAETPLPAAGLILSFRICTRYMQHEETEDRVISRVIKYQIRRAMTKFRGCIDIHNGQVKQIVGGTLTSAESQLKTNFVATQPAEYFGRLYRKNEVYGTHVIKLGPGCDEAAEEALAEWPGQLQVGGGITAENAQSWIQEKKASKVIVTSYLFPDGKLSIPRLEKLVSLVGKEHLVIDLSCRKKIVDGEPRWIVAMNRWQTLTDTEVNKSTLDELSRYCSEFLIHAADVEGLCRGIDEDLVAALGNWVTIPTVYAGGAKSLNDLELVAKLSHGKVDLTFGSALDIFGGDKVAFSSCVAWNQSQSQ
SIO_010081: AWJ20_2186
subclass of: SO_0000673
so part of: AWJ20_2186
location: 618341..619315
location: region:618341-619315:1
so has part: feature:618341-619315:1:exon

XP_018737063.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:618341-619315:1:exon

AWJ20_2187
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RPB3
locus tag: AWJ20_2187
so part of: sequence
location: complement(<619501..>620109)
location: region:619501-620109:-1
so has part: feature:619501-620109:-1:exon
subclass of: SO_0000010

30034070
type: Gene
SIO_000068: ncbigene

position:619501:-1
position: 619501
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:620109:-1
position: 620109
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:619501-620109:-1:exon

AWJ20_2187
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RPB3
locus tag: AWJ20_2187
product: DNA-directed RNA polymerase II core subunit RPB3
transcript id: XM_018879117.1
SIO_010081: AWJ20_2187
subclass of: SO_0000673
so part of: AWJ20_2187
location: complement(<619501..>620109)
location: region:619501-620109:-1
so has part: feature:619501-620109:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:619501-620109:-1:exon

AWJ20_2187
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RPB3
locus tag: AWJ20_2187
inference: similar to AA sequence:KEGG_Orthology:K03011
note: RNA polymerase II third largest subunit B44; part of central core; similar to prokaryotic alpha subunit; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 1331084]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 2183013]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 2186966]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 15520468]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0001055 - RNA polymerase II activity [Evidence IDA] [PMID 8288647]; GO_function: GO:0003968 - RNA-directed RNA polymerase activity [Evidence IDA] [PMID 18004386]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0046983 - protein dimerization activity [Evidence IEA]; GO_process: GO:0006369 - termination of RNA polymerase II transcription [Evidence IMP] [PMID 16537912]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 2685562]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]
codon start: 1
product: DNA-directed RNA polymerase II core subunit RPB3
translation: MEIYTRDLVVHLPKDGRRDESIGQPVFSDPAKKGVLICKLRKHQELRLKCIAKKGIAKEHAKWSPVAAVGFEYDPWNKLHHTDYWYEESIEEEWPKSKNADWEEPPKENEPFDYTAKPDKFYYTVETVGSLKPNEVVERGIRVLQNKLAEIVLAVDKLDGRGPGMDLGGGATGRHGGATDYGGATTNMGNYGSPRMDGNQWF
SIO_010081: AWJ20_2187
subclass of: SO_0000673
so part of: AWJ20_2187
location: complement(619501..620109)
location: region:619501-620109:-1
so has part: feature:619501-620109:-1:exon

XP_018737064.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:619501-620109:-1:exon

AWJ20_2188
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2188
so part of: sequence
location: complement(<621866..>623555)
location: region:621866-623555:-1
so has part: feature:621866-623555:-1:exon
subclass of: SO_0000010

30034071
type: Gene
SIO_000068: ncbigene

position:621866:-1
position: 621866
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:623555:-1
position: 623555
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:621866-623555:-1:exon

AWJ20_2188
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2188
product: hypothetical protein
transcript id: XM_018879118.1
SIO_010081: AWJ20_2188
subclass of: SO_0000673
so part of: AWJ20_2188
location: complement(join(<621866..622651,623514..>623555))
location: region:621866-623555:-1
so has part: feature:623514-623555:-1:exon
so has part: feature:621866-622651:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:623514-623555:-1:exon

position:623514:-1
position: 623514
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:621866-622651:-1:exon

position:622651:-1
position: 622651
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

AWJ20_2188
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2188
codon start: 1
product: hypothetical protein
translation: MSMYIWSHISHVRVSANNYAGQQPSVTPGYPNYASSGTVPQQPAAATSSVASVPAPATAPVNQGVPSVPAVPQQATETASAVPAVPAVSTQTPAASNSVPAAATAPSVSSNNGGDASVQGTHAGRGDSGASSRPKHNNRNGQGQKPKVVLPEFNFDASNAKFSKEDITKEESVIPKAPAEGFYDKKSSFFDNISSTTKEQIEGSSDNKTAYQRRGEERQLNMETFGQAESNHGNWRGGRGGRGRGRGGHRGRGNGNWRGGRGGFNNNNNNSNNFS
SIO_010081: AWJ20_2188
subclass of: SO_0000673
so part of: AWJ20_2188
location: complement(join(621866..622651,623514..623555))
location: region:621866-623555:-1
so has part: feature:623514-623555:-1:exon
so has part: feature:621866-622651:-1:exon

XP_018737065.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:623514-623555:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:621866-622651:-1:exon

AWJ20_2189
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2189
so part of: sequence
location: complement(<623783..>623877)
location: region:623783-623877:-1
so has part: feature:623783-623877:-1:exon
subclass of: SO_0000663

30034072
type: Gene
SIO_000068: ncbigene

position:623783:-1
position: 623783
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:623877:-1
position: 623877
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:623783-623877:-1:exon

AWJ20_2189
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_2189
product: tRNA-Phe
SIO_010081: AWJ20_2189
subclass of: SO_0000673
so part of: AWJ20_2189
location: complement(<623783..>623877)
location: region:623783-623877:-1
so has part: feature:623783-623877:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:623783-623877:-1:exon

AWJ20_2190
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: NAT3
locus tag: AWJ20_2190
so part of: sequence
location: <625411..>625941
location: region:625411-625941:1
so has part: feature:625411-625941:1:exon
subclass of: SO_0000010

30034074
type: Gene
SIO_000068: ncbigene

position:625411:1
position: 625411
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:625941:1
position: 625941
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:625411-625941:1:exon

AWJ20_2190
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: NAT3
locus tag: AWJ20_2190
product: Nat3p
transcript id: XM_018879120.1
SIO_010081: AWJ20_2190
subclass of: SO_0000673
so part of: AWJ20_2190
location: <625411..>625941
location: region:625411-625941:1
so has part: feature:625411-625941:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:625411-625941:1:exon

AWJ20_2190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: NAT3
locus tag: AWJ20_2190
inference: similar to AA sequence:KEGG_Orthology:K17972
note: Catalytic subunit of the NatB N-terminal acetyltransferase; NatB catalyzes acetylation of the amino-terminal methionine residues of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met; GO_component: GO:0031416 - NatB complex [Evidence IDA] [PMID 12783868]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]; GO_function: GO:0004596 - peptide alpha-N-acetyltransferase activity [Evidence IEA]; GO_function: GO:0004596 - peptide alpha-N-acetyltransferase activity [Evidence IMP,ISS] [PMID 10545125]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0017196 - N-terminal peptidyl-methionine acetylation [Evidence IMP] [PMID 10545125]; GO_process: GO:0007010 - cytoskeleton organization [Evidence IGI,IMP] [PMID 12808144]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence IGI,IMP] [PMID 12808144]
codon start: 1
product: Nat3p
translation: MTTPASRTSQTLIADRPESKMTSITPLKATDLLSLNSINLDVLTENYHLGFYLQYLSDWPAMFFKSTNPADRCTGYMMGKSEGRGLEWHSHITAVTVDCDYRRLGIAKDLVDHLVTCSEESTQDCYFMDLYVRATNRLAIDMYKKFGFSVFRRVVAYYSMGEPSDDGEDAFGKYHQ
SIO_010081: AWJ20_2190
subclass of: SO_0000673
so part of: AWJ20_2190
location: 625411..625941
location: region:625411-625941:1
so has part: feature:625411-625941:1:exon

XP_018737066.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:625411-625941:1:exon

AWJ20_2191
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2191
so part of: sequence
location: <626823..>627266
location: region:626823-627266:1
so has part: feature:626823-627266:1:exon
subclass of: SO_0000010

30034075
type: Gene
SIO_000068: ncbigene

position:626823:1
position: 626823
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:627266:1
position: 627266
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:626823-627266:1:exon

AWJ20_2191
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2191
product: 60S ribosomal protein L12
transcript id: XM_018879121.1
SIO_010081: AWJ20_2191
subclass of: SO_0000673
so part of: AWJ20_2191
location: <626823..>627266
location: region:626823-627266:1
so has part: feature:626823-627266:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:626823-627266:1:exon

AWJ20_2191
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2191
codon start: 1
product: 60S ribosomal protein L12
translation: MSRLTVDSAADGLSSTQNLLDSTRQLLGKGLGSHLTGNVDDLIEGNATVVLDVLLLLSVSWGFLKSSDEERRGRGNNRDSGLTVLDGQLNSDTDTLEVLGGLGDIFTDLLGGETKRTDLGGKSGRSTNFTTDSTEEEDFNFVGVDLN
SIO_010081: AWJ20_2191
subclass of: SO_0000673
so part of: AWJ20_2191
location: 626823..627266
location: region:626823-627266:1
so has part: feature:626823-627266:1:exon

XP_018737067.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:626823-627266:1:exon

AWJ20_2192
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: UBA1
locus tag: AWJ20_2192
so part of: sequence
location: complement(<628197..>631256)
location: region:628197-631256:-1
so has part: feature:628197-631256:-1:exon
subclass of: SO_0000010

30034076
type: Gene
SIO_000068: ncbigene

position:628197:-1
position: 628197
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:631256:-1
position: 631256
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:628197-631256:-1:exon

AWJ20_2192
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: UBA1
locus tag: AWJ20_2192
product: E1 ubiquitin-activating protein UBA1
transcript id: XM_018879122.1
SIO_010081: AWJ20_2192
subclass of: SO_0000673
so part of: AWJ20_2192
location: complement(<628197..>631256)
location: region:628197-631256:-1
so has part: feature:628197-631256:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:628197-631256:-1:exon

AWJ20_2192
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: UBA1
locus tag: AWJ20_2192
inference: similar to AA sequence:KEGG_Orthology:K03178
note: Ubiquitin activating enzyme (E1); involved in ubiquitin-mediated protein degradation and essential for viability; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 7629121]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 7629121]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008641 - small protein activating enzyme activity [Evidence IEA]; GO_function: GO:0004839 - ubiquitin activating enzyme activity [Evidence IDA] [PMID 1989885]; GO_process: GO:0006464 - cellular protein modification process [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IDA] [PMID 1989885]
codon start: 1
product: E1 ubiquitin-activating protein UBA1
translation: MNVDAEAPSGEIDEGLYSRQLYVLGRDAMKRMAQSNVLIVGLKGLGAEIAKNVTLAGVKSIALYDPGAVKIEDLSSQFFLYESDVGSGKSRAELTAPRLSELNQYVPVSVVDGELTEDVLAKFQVVVLTNTDIETQVKINSFTHANNINFISTDIRGLFGSVFVDFGDKFQVFDPTGEEPQSGIISAIEPDGTVAALDETRHGLEDGDWVKFTEVEGLEALNDGQPREVKVTGPYTFNIGDVSGLGSYVKGGIFTQVKKPLELSFQSLADQLAKPEYLVTDFAKFDRPAQLHIGFLALHGFANQHGGELPRPYNKEDANQVAHLAKSVAAQYPEVLGETAIDEDLIRKLSFQSRGDYAPLAAVFGGLVAQEVLKACSGKFVPVRQFSYFDSLESLPSKEEITEEDAAPSGSRYDGNVAIFGKKFVEKLRNLKVFLVGSGAIGCEMLKNWALLGVGSGPEGRIIVTDNDSIEKSNLNRQFLFRPSDVGKQKSSVAAAAVVKINPDLKGKIEARSDKVGPETEDIFNDKFWNSLDFVTNALDNVDARTYVDRRCVFFRKPLLESGTLGTKGNVQVVYPDLTESYSSSQDPPEKSIPLCTLRSFPNKIDHTIAWAKSLFQGYFVDSAENVNLYLSQPNFVESHLKQSGDQKTILETIYSFLVSDRPLTFEQCIAWARLEFEKKFNNDIQQLLYNFPKDAVTSTGTPFWSGPKRAPTPLKFDINNEDHFNFIVAGANLHAFNYGLKSDVSTREEYTRVLQTISVPEFKPRSGVSIQANDNDPVPEANLGDDQDEIQKLAQSLPPPASLAGFRLIPVEFEKDDDTNYHIDFITAGSNLRALNYGIDPADKSKTKFIAGRIIPAIATTTSLVTGLVCLELTKVVDGENKTIEDFKNGFINLALPFFGFSEPIASAKIKYNDKEIDKIWGRFDVHNKDITLKELIEHFKTEEGLEINMLSTGTTLLYASFHPASKKKERLGLKLRDLVEQVSKKPIPPHTETMIFEIVADDSEGEDVEVPFITLHL
SIO_010081: AWJ20_2192
subclass of: SO_0000673
so part of: AWJ20_2192
location: complement(628197..631256)
location: region:628197-631256:-1
so has part: feature:628197-631256:-1:exon

XP_018737068.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:628197-631256:-1:exon

AWJ20_2193
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2193
so part of: sequence
location: <632569..>632672
location: region:632569-632672:1
so has part: feature:632569-632672:1:exon
subclass of: SO_0000663

30034077
type: Gene
SIO_000068: ncbigene

position:632569:1
position: 632569
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:632672:1
position: 632672
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:632569-632672:1:exon

AWJ20_2193
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_2193
product: tRNA-Ser
SIO_010081: AWJ20_2193
subclass of: SO_0000673
so part of: AWJ20_2193
location: <632569..>632672
location: region:632569-632672:1
so has part: feature:632569-632672:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:632569-632672:1:exon

AWJ20_2194
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2194
so part of: sequence
location: complement(<635302..>636210)
location: region:635302-636210:-1
so has part: feature:635302-636210:-1:exon
subclass of: SO_0000010

30034078
type: Gene
SIO_000068: ncbigene

position:635302:-1
position: 635302
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:636210:-1
position: 636210
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:635302-636210:-1:exon

AWJ20_2194
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2194
product: hypothetical protein
transcript id: XM_018879123.1
SIO_010081: AWJ20_2194
subclass of: SO_0000673
so part of: AWJ20_2194
location: complement(join(<635302..635914,636185..>636210))
location: region:635302-636210:-1
so has part: feature:636185-636210:-1:exon
so has part: feature:635302-635914:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:636185-636210:-1:exon

position:636185:-1
position: 636185
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:635302-635914:-1:exon

position:635914:-1
position: 635914
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

AWJ20_2194
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2194
codon start: 1
product: hypothetical protein
translation: MLPAPTLWKLETAPVGAPQEVAGAELAGGGGAADEAAADEAAADEAAADEAAADEAAADEAAADEAAADEAAADEAAADEAAADEAAAEEAAAEEAAAEEAAADEAAAEEAAADEAAADEAAAEEAAAEEAAAEEAAADEAAADEAAAEEAAADDEGAADDEGAADDEQALLDGLGLEAIVTEYLLAAAAKAASILEKSLITSAKTEQSNLS
SIO_010081: AWJ20_2194
subclass of: SO_0000673
so part of: AWJ20_2194
location: complement(join(635302..635914,636185..636210))
location: region:635302-636210:-1
so has part: feature:636185-636210:-1:exon
so has part: feature:635302-635914:-1:exon

XP_018737069.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:636185-636210:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:635302-635914:-1:exon

AWJ20_2195
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2195
so part of: sequence
location: complement(<637869..>637979)
location: region:637869-637979:-1
so has part: feature:637869-637979:-1:exon
subclass of: SO_0000663

30034079
type: Gene
SIO_000068: ncbigene

position:637869:-1
position: 637869
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:637979:-1
position: 637979
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:637869-637979:-1:exon

AWJ20_2195
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_2195
product: tRNA-Leu
SIO_010081: AWJ20_2195
subclass of: SO_0000673
so part of: AWJ20_2195
location: complement(<637869..>637979)
location: region:637869-637979:-1
so has part: feature:637869-637979:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:637869-637979:-1:exon

AWJ20_2196
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2196
so part of: sequence
location: <638621..>639715
location: region:638621-639715:1
so has part: feature:638621-639715:1:exon
subclass of: SO_0000010

30034080
type: Gene
SIO_000068: ncbigene

position:638621:1
position: 638621
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:639715:1
position: 639715
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:638621-639715:1:exon

AWJ20_2196
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2196
product: reverse transcriptase
transcript id: XM_018879124.1
SIO_010081: AWJ20_2196
subclass of: SO_0000673
so part of: AWJ20_2196
location: <638621..>639715
location: region:638621-639715:1
so has part: feature:638621-639715:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:638621-639715:1:exon

AWJ20_2196
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2196
codon start: 1
product: reverse transcriptase
translation: MHVDNQRTSKKRQLRLVLPSGERRQASPTLKLLGVTLDSQWKFSKHVEAIAIKGKMVLGIIRRLGGITWGVTGASMRNLYQGCVRPILEYASPVWYPKITKQEREQLQRIQNTGLRAILGGYHQTPIDCLHRDTDIMPLEQRYDTLQDNYIVRLHRNVDPENPVNAESTWWRKHMEHNELVQRLYEVLPKEEIFQDRIRRRKPPWKKEDMESESKAWKVKSELKKKIYQRHHTIWETQYRTSAKGEFYRSYTLPRLYNADHKNPLRYFLNECSKNELSKLVQLRTAKGAFGMFFKRFKINNRPHQCECGEEEDVKHLLCECPVTENHRQILRDASATLDIKVLLDSKKGLKAVLAFLAKAPQLL
SIO_010081: AWJ20_2196
subclass of: SO_0000673
so part of: AWJ20_2196
location: 638621..639715
location: region:638621-639715:1
so has part: feature:638621-639715:1:exon

XP_018737070.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:638621-639715:1:exon

AWJ20_2197
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: POL92
locus tag: AWJ20_2197
so part of: sequence
location: complement(<641223..>644366)
location: region:641223-644366:-1
so has part: feature:641223-644366:-1:exon
subclass of: SO_0000010

30034081
type: Gene
SIO_000068: ncbigene

position:641223:-1
position: 641223
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:644366:-1
position: 644366
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:641223-644366:-1:exon

AWJ20_2197
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: POL92
locus tag: AWJ20_2197
product: polyprotein of L1-like non-LTR retrotransposon Zorro 3
transcript id: XM_018879125.1
SIO_010081: AWJ20_2197
subclass of: SO_0000673
so part of: AWJ20_2197
location: complement(<641223..>644366)
location: region:641223-644366:-1
so has part: feature:641223-644366:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:641223-644366:-1:exon

AWJ20_2197
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: POL92
locus tag: AWJ20_2197
note: allele of CaO19.8194
codon start: 1
product: polyprotein of L1-like non-LTR retrotransposon Zorro 3
translation: MFADFDLLLLQEPGLNLGQHPIQHSAWVAVHTQSQTGRINAITYINKRIYGQSQLKMVGELTTENVVTIQIGQLYITNIYNRISEDIHPVEYYKTLLPQIPELIIIAGDFNLHHPMWQSTEHVTREANSWADWVNDNGLLLATVPNVPTHIFGNTIDLTFTTPNITITPEKSEDVGSDHYLQKWRIDTNPLAIELLQTYGGRYNYKRADWENFEKVLNSRAAMVTIPKELRGYSNGKSTHKVADRYASKLIGLLCNCLDETVPKLKIVPRSKRWWTPELRQAKRDVGRARRRARSKPTEENIRLRQQANEEYASKILEAKNTTWNSFLASRRGGEIYDAHKMIKPREQESVMPALRLETGELAQTFEEQEDELYRGLFPHVTPSTRRVLKVVKTGQWKSLRTQEIEDAIRDQAPHKAPGPDGVKTVAIKRAWVVKRFRKLLKGLLKYCIRVGYHPKCFREGITVVIPKRKRDPTLARSYRPITLLSTLGKVLEKIMQRRLTALTSGMLPVDQYGGRHGSSAVEAAHKLVHHAEKRMKRGQVTSVLAIDIKGAFDHVHRDTLLDTMGGMGLPTAVQNWVYQFMRGRRTSLVIDGKRTKERRIATGIPQGSPISPLLFLIYTSPLYPLIKSMGGKVIGFIDDITIYVSSTRYAENTAKLSNILARCHEWATSAHAFIDYGEKLGFMHIAKRVTPKGCRRLILPTGERIQATGSLRLLGVTIDRQLKFDEHAKSVISKGQSALNIIRRLGGVTRGVTGATMRCLYKSCVRPILEYASPIWYNRIGKGLKEAIQRIQNAALRSILGAYKPTAIDSLHRDAEIPPVEHRMLETEQYYLVRLHRDLHRYNPHRIRARKLYSGTILGDRLDELYRTVEATDIKKDRYRLWKPPWASRDSEAISKASSQKKSIRKEIRSQCYQKWEIEYTQSPKGAFYRSFTAPRLYSTKHANALRPFLYESPRGELSKLVQLRTGMGAMGSFFQRFRISNRRYDCRCGVEETVEHILRDCPLTEEHRQILREASRELDLPSLLDTRKGLKAVASFLKANPSLLS
SIO_010081: AWJ20_2197
subclass of: SO_0000673
so part of: AWJ20_2197
location: complement(641223..644366)
location: region:641223-644366:-1
so has part: feature:641223-644366:-1:exon

XP_018737071.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:641223-644366:-1:exon

AWJ20_2198
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2198
so part of: sequence
location: <646666..>646739
location: region:646666-646739:1
so has part: feature:646666-646739:1:exon
subclass of: SO_0000663

30034082
type: Gene
SIO_000068: ncbigene

position:646666:1
position: 646666
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:646739:1
position: 646739
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:646666-646739:1:exon

AWJ20_2198
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_2198
product: tRNA-Ala
SIO_010081: AWJ20_2198
subclass of: SO_0000673
so part of: AWJ20_2198
location: <646666..>646739
location: region:646666-646739:1
so has part: feature:646666-646739:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:646666-646739:1:exon

AWJ20_2199
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: BAT1
locus tag: AWJ20_2199
so part of: sequence
location: <648850..>649974
location: region:648850-649974:1
so has part: feature:648850-649974:1:exon
subclass of: SO_0000010

30034083
type: Gene
SIO_000068: ncbigene

position:648850:1
position: 648850
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:649974:1
position: 649974
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:648850-649974:1:exon

AWJ20_2199
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: BAT1
locus tag: AWJ20_2199
product: branched-chain-amino-acid transaminase BAT1
transcript id: XM_018879126.1
SIO_010081: AWJ20_2199
subclass of: SO_0000673
so part of: AWJ20_2199
location: <648850..>649974
location: region:648850-649974:1
so has part: feature:648850-649974:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:648850-649974:1:exon

AWJ20_2199
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: BAT1
locus tag: AWJ20_2199
inference: similar to AA sequence:KEGG_Orthology:K00826
note: Mitochondrial branched-chain amino acid (BCAA) aminotransferase; preferentially involved in BCAA biosynthesis; homolog of murine ECA39; highly expressed during logarithmic phase and repressed during stationary phase; BAT1 has a paralog, BAT2, that arose from the whole genome duplication; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 8798704]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0052656 - L-isoleucine transaminase activity [Evidence IEA]; GO_function: GO:0052654 - L-leucine transaminase activity [Evidence IEA]; GO_function: GO:0052655 - L-valine transaminase activity [Evidence IEA]; GO_function: GO:0004084 - branched-chain-amino-acid transaminase activity [Evidence IEA,IEA]; GO_function: GO:0004084 - branched-chain-amino-acid transaminase activity [Evidence IDA] [PMID 8798704]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IDA,IMP] [PMID 8798704]; GO_process: GO:0009083 - branched-chain amino acid catabolic process [Evidence IMP] [PMID 8702755]; GO_process: GO:0009081 - branched-chain amino acid metabolic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009097 - isoleucine biosynthetic process [Evidence IEA]; GO_process: GO:0009098 - leucine biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009099 - valine biosynthetic process [Evidence IEA]
codon start: 1
product: branched-chain-amino-acid transaminase BAT1
translation: MTVTYSELSAKGLVIEKHPNPTQFENHSDLPSSRATDYLLEVTWTIDQGWGTPSLHPYGPLSLDPASSVLHYATTCFEGMKAYRSFDGKKVTLFRPLDNINRLNDSCARASLPQLEPNAALALLEKFVEMEARFIAPGSFIYLRPMVMGTNAHLGLTTPTEAKFLIMASMMPKLNAAPLKLCSSPPDQIRAWKGGFGYAKLGANYGPTLKANNEAIKNGFSQVLWLMGEEGIVTEAGGANFFAVIKNEKTGKDEIMTCPLTTGVILPGVTRRSVLELLRNKYTSEGVEVNEKEFTISDIEKASDEGRLVEAFAVGTAYFIAPVQTIRTPAGKDISVPMSIGTSGDYAHYIKETLSQIMWSKVEHPWSHPVASAQ
SIO_010081: AWJ20_2199
subclass of: SO_0000673
so part of: AWJ20_2199
location: 648850..649974
location: region:648850-649974:1
so has part: feature:648850-649974:1:exon

XP_018737072.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:648850-649974:1:exon

AWJ20_2200
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ZTA1
locus tag: AWJ20_2200
so part of: sequence
location: complement(<650082..>651068)
location: region:650082-651068:-1
so has part: feature:650082-651068:-1:exon
subclass of: SO_0000010

30034086
type: Gene
SIO_000068: ncbigene

position:650082:-1
position: 650082
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:651068:-1
position: 651068
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:650082-651068:-1:exon

AWJ20_2200
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ZTA1
locus tag: AWJ20_2200
product: Zta1p
transcript id: XM_018879129.1
SIO_010081: AWJ20_2200
subclass of: SO_0000673
so part of: AWJ20_2200
location: complement(<650082..>651068)
location: region:650082-651068:-1
so has part: feature:650082-651068:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:650082-651068:-1:exon

AWJ20_2200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ZTA1
locus tag: AWJ20_2200
inference: similar to AA sequence:KEGG_Orthology:K00344
note: NADPH-dependent quinone reductase; GFP-tagged protein localizes to the cytoplasm and nucleus; has similarity to E. coli quinone oxidoreductase and to human zeta-crystallin; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0032440 - 2-alkenal reductase [NAD(P)] activity [Evidence IDA] [PMID 21276778]; GO_function: GO:0017091 - AU-rich element binding [Evidence IDA] [PMID 17497241]; GO_function: GO:0017091 - AU-rich element binding [Evidence IDA] [PMID 19007762]; GO_function: GO:0003960 - NADPH:quinone reductase activity [Evidence IEA]; GO_function: GO:0003960 - NADPH:quinone reductase activity [Evidence IDA] [PMID 17497241]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 17497241]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]
codon start: 1
product: Zta1p
translation: MAIPTTQKAIRIHETGGPEVVKLEEIPVPEITETQVLVKNEYAGVNFIETYFRKGIYKAQLPVTLGREGAGEVVKVGSKVSNYSVGDKVGFVGSAFAEYVAIEAVGKALKITKIPKGLDTKTVGAGLIQGLTALVLTTQSVALKKGDSVLVHAAAGGTGALIVQLAKAFGATVIGTTSSAEKAKIAKAAGADHVINYRTEDVTARVKEITNGAGVTGTLDGVGKDTFNISIASTANSGTVASFGNASGVVPEFSLLSLERNIKVQRPSLFNALTTTEDWEALTKQFFDLLLSGDLKLDISKVYPLAETSQAISDLESGKTTGKLVIQI
SIO_010081: AWJ20_2200
subclass of: SO_0000673
so part of: AWJ20_2200
location: complement(650082..651068)
location: region:650082-651068:-1
so has part: feature:650082-651068:-1:exon

XP_018737073.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:650082-651068:-1:exon

AWJ20_2201
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2201
so part of: sequence
location: complement(<651923..>652004)
location: region:651923-652004:-1
so has part: feature:651923-652004:-1:exon
subclass of: SO_0000663

30034087
type: Gene
SIO_000068: ncbigene

position:651923:-1
position: 651923
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:652004:-1
position: 652004
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:651923-652004:-1:exon

AWJ20_2201
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_2201
product: tRNA-Thr
SIO_010081: AWJ20_2201
subclass of: SO_0000673
so part of: AWJ20_2201
location: complement(<651923..>652004)
location: region:651923-652004:-1
so has part: feature:651923-652004:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:651923-652004:-1:exon

AWJ20_2202
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2202
so part of: sequence
location: complement(<653395..>655200)
location: region:653395-655200:-1
so has part: feature:653395-655200:-1:exon
subclass of: SO_0000010

30034088
type: Gene
SIO_000068: ncbigene

position:653395:-1
position: 653395
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:655200:-1
position: 655200
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:653395-655200:-1:exon

AWJ20_2202
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2202
product: hypothetical protein
transcript id: XM_018879130.1
SIO_010081: AWJ20_2202
subclass of: SO_0000673
so part of: AWJ20_2202
location: complement(<653395..>655200)
location: region:653395-655200:-1
so has part: feature:653395-655200:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:653395-655200:-1:exon

AWJ20_2202
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2202
codon start: 1
product: hypothetical protein
translation: MAAQYVSNISPLRLVSYSFSDEGEFPHFATVVTEKASNAAIAAAAASASASFGINTYSNGTNPGGPDDHISYLDLSFLTLQAVSQTVIICLFGYFAARAKILTPAVQRQVSMLNVQIFTPCLIFSKLASSLSLSALVDIAIIPVLFVITTGISMLCAKITSRIFRFNLRESNFVTAMAVFGNSNSLPVSLTVSLAYTLPSLAWPDIPDDNQDDVASRGILYLLIFQQLGQILRWSWGYNTLLAKPKDEDEFCEEDEDDEISSIEEGAVANESAHVGTAKNKHSVNRKRRKQRGVDYSAVNADDVESQLGPQKSPVIITEDNASSPSSSSSSSVVETGFSTRVGSENGLAELGSESAPLIVGDENTVSLASPTSHTSHVVSRISSNATVLSRNDESCNASTPLLPQTLSRKIISSVQKVFMSFLSFMNPPLWSMVIAIIVASIPAAKHELFETNGFVNHAITGAVTQVGGIAIPMILVVLGSNLAPDESTAPASKRHSSIVFASLISRMILPSIFLLPIIALSVKYIKLSILDDPIFLLVAFILTISPPAIQLSQISQLNGVFEKEMASVLFWGYVVLTLPSTIAIVVASLEVLDWAGTTRS
SIO_010081: AWJ20_2202
subclass of: SO_0000673
so part of: AWJ20_2202
location: complement(653395..655200)
location: region:653395-655200:-1
so has part: feature:653395-655200:-1:exon

XP_018737074.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:653395-655200:-1:exon

AWJ20_2203
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2203
so part of: sequence
location: complement(<657616..>658770)
location: region:657616-658770:-1
so has part: feature:657616-658770:-1:exon
subclass of: SO_0000010

30034089
type: Gene
SIO_000068: ncbigene

position:657616:-1
position: 657616
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:658770:-1
position: 658770
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:657616-658770:-1:exon

AWJ20_2203
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2203
product: hypothetical protein
transcript id: XM_018879131.1
SIO_010081: AWJ20_2203
subclass of: SO_0000673
so part of: AWJ20_2203
location: complement(<657616..>658770)
location: region:657616-658770:-1
so has part: feature:657616-658770:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:657616-658770:-1:exon

AWJ20_2203
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2203
codon start: 1
product: hypothetical protein
translation: MYPKIEGLDPDETKRTFQGVYAHSARWDPETPLEDKDVIVIGNGCSGAQIVPACAKTAKSVTQFFRAKHWLVPTPKMDPLKVRDKVNNVLGVRLSRMLLFLFLEAQFPMFSNDGYWANKVRDFNTNKARTHMLKTAPQKYHDMIMPDFKIGCKRRIIDYGYLQSLHNENVLLSDDPIVSVSEHHVHTKSGKSYHADVIFAATGFDVQSSSGNIPIYGLDKEENITEFWDRTGVSAYNVSQVAGYPNLFYLLGPNAGTGHTSALLQIENTLTYIDNVAGYVLRGEASSVDVKLTAYLEWKREINEASKQTVQMKGGCSSWYIKNGTNSVFYPWSQIRYWWRAVWPKYEDQTYRWTRNDVIQTKRRRRHTLLAVLLSIILKFTYFK
SIO_010081: AWJ20_2203
subclass of: SO_0000673
so part of: AWJ20_2203
location: complement(657616..658770)
location: region:657616-658770:-1
so has part: feature:657616-658770:-1:exon

XP_018737075.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:657616-658770:-1:exon

AWJ20_2204
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: JLP1
locus tag: AWJ20_2204
so part of: sequence
location: complement(<659778..>660935)
location: region:659778-660935:-1
so has part: feature:659778-660935:-1:exon
subclass of: SO_0000010

30034090
type: Gene
SIO_000068: ncbigene

position:659778:-1
position: 659778
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:660935:-1
position: 660935
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:659778-660935:-1:exon

AWJ20_2204
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: JLP1
locus tag: AWJ20_2204
product: Jlp1p
transcript id: XM_018879132.1
SIO_010081: AWJ20_2204
subclass of: SO_0000673
so part of: AWJ20_2204
location: complement(<659778..>660935)
location: region:659778-660935:-1
so has part: feature:659778-660935:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:659778-660935:-1:exon

AWJ20_2204
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: JLP1
locus tag: AWJ20_2204
note: Fe(II)-dependent sulfonate/alpha-ketoglutarate dioxygenase; involved in sulfonate catabolism for use as a sulfur source; contains sequence that resembles a J domain (typified by the E. coli DnaJ protein); induced by sulphur starvation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0000907 - sulfonate dioxygenase activity [Evidence IDA] [PMID 10482536]; GO_process: GO:0046306 - alkanesulfonate catabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0044273 - sulfur compound catabolic process [Evidence IMP] [PMID 10482536]
codon start: 1
product: Jlp1p
translation: MSPPTAVEPPKPVILDSKQFKKAGGDYKGLSPFFDKPTEGPSYQPNTKPLKASGALDEKYSFSEVSPVIGREYTGAQLRDILQDQELLRDLAITVSRRGVVFFRNQALTAEEQKELADKLGVLTGKPSTSKLHIHPRTPGGGFLKPDGSEIDPEITIISSKLQKSLYENRNRYKENASRGWHADFAFEPIPSTYSVLKIIEKPEVGGDTLWISGNGLYDKLSPSFREYLETLYATFQGSGIEKAAQGKFDLFAGPRGAPENVGTELKAVHPAIRTNPVTGWKSLYAAGAQFSHFNDITEDESGALQRYLKSVLIGSHDLQARFKWGKNDVAIWDNRSVFHSATNDYFETAVERLGVRTVGLGERPYFDPKSKSRSDDLRESGLSV
SIO_010081: AWJ20_2204
subclass of: SO_0000673
so part of: AWJ20_2204
location: complement(659778..660935)
location: region:659778-660935:-1
so has part: feature:659778-660935:-1:exon

XP_018737076.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:659778-660935:-1:exon

AWJ20_2205
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2205
so part of: sequence
location: <662044..>663009
location: region:662044-663009:1
so has part: feature:662044-663009:1:exon
subclass of: SO_0000010

30034091
type: Gene
SIO_000068: ncbigene

position:662044:1
position: 662044
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:663009:1
position: 663009
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:662044-663009:1:exon

AWJ20_2205
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2205
product: putative epoxide hydrolase
transcript id: XM_018879133.1
SIO_010081: AWJ20_2205
subclass of: SO_0000673
so part of: AWJ20_2205
location: <662044..>663009
location: region:662044-663009:1
so has part: feature:662044-663009:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:662044-663009:1:exon

AWJ20_2205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2205
note: similar to several putative epoxide hydrolases; has match to alpha/beta hydrolase fold; allele of CaO19.6709
codon start: 1
product: putative epoxide hydrolase
translation: MSRFEVKLHANNLTFSAYSSYTEHQLAQVTPDRIILLLHGFPDTRQSFDEIWPILEKKYPAPSTLLLAPSLRGYEPETVLPSRLSYTPTDIASDVIGWIKEIIGDKKIPVHLIGHDWGALATFRTASLQPDLITSISTLAIPYMVNLSPLELLWHVPEQIYLSSYMVRMQTSYFYGSRLYEDAVTTVVGAQGKERKVLPYIEYLWKYWSPGWKFTQDELADFCEAVQKPGVVDATTGYYRSLAAKRDRYWRVDFNKVPGLLIGGRDDGCMSYRLYDLQREKLAPYGENVKIALVDKVGHFMHRENPVTIAELCIDWIDSHE
SIO_010081: AWJ20_2205
subclass of: SO_0000673
so part of: AWJ20_2205
location: 662044..663009
location: region:662044-663009:1
so has part: feature:662044-663009:1:exon

XP_018737077.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:662044-663009:1:exon

AWJ20_2206
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: UGA4
locus tag: AWJ20_2206
so part of: sequence
location: <664660..>664944
location: region:664660-664944:1
so has part: feature:664660-664944:1:exon
subclass of: SO_0000010

30034092
type: Gene
SIO_000068: ncbigene

position:664660:1
position: 664660
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:664944:1
position: 664944
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:664660-664944:1:exon

AWJ20_2206
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: UGA4
locus tag: AWJ20_2206
product: Uga4p
transcript id: XM_018879134.1
SIO_010081: AWJ20_2206
subclass of: SO_0000673
so part of: AWJ20_2206
location: <664660..>664944
location: region:664660-664944:1
so has part: feature:664660-664944:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:664660-664944:1:exon

AWJ20_2206
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: UGA4
locus tag: AWJ20_2206
note: GABA (gamma-aminobutyrate) permease; serves as a GABA transport protein involved in the utilization of GABA as a nitrogen source; catalyzes the transport of putrescine and delta-aminolevulinic acid (ALA); localized to the vacuolar membrane; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14985124]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015495 - gamma-aminobutyric acid:proton symporter activity [Evidence IGI] [PMID 8455553]; GO_function: GO:0015489 - putrescine transmembrane transporter activity [Evidence IGI] [PMID 14985124]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IGI] [PMID 14985124]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IEP,IGI] [PMID 8455553]; GO_process: GO:0015847 - putrescine transport [Evidence IGI] [PMID 14985124]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IGI] [PMID 8455553]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Uga4p
translation: MGNNSEEIVRQETLQGVPTTEKPTVTDDDHLLMQLGYKPELRRNFSVIQVFGIAFSIMSLLPSIASVLALNLPAGGCATWGWLAASVCILTVGM
SIO_010081: AWJ20_2206
subclass of: SO_0000673
so part of: AWJ20_2206
location: 664660..664944
location: region:664660-664944:1
so has part: feature:664660-664944:1:exon

XP_018737078.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:664660-664944:1:exon

AWJ20_2207
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: UGA4
locus tag: AWJ20_2207
so part of: sequence
location: <665026..>666414
location: region:665026-666414:1
so has part: feature:665026-666414:1:exon
subclass of: SO_0000010

30034093
type: Gene
SIO_000068: ncbigene

position:665026:1
position: 665026
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:666414:1
position: 666414
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:665026-666414:1:exon

AWJ20_2207
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: UGA4
locus tag: AWJ20_2207
product: Uga4p
transcript id: XM_018879135.1
SIO_010081: AWJ20_2207
subclass of: SO_0000673
so part of: AWJ20_2207
location: <665026..>666414
location: region:665026-666414:1
so has part: feature:665026-666414:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:665026-666414:1:exon

AWJ20_2207
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: UGA4
locus tag: AWJ20_2207
note: GABA (gamma-aminobutyrate) permease; serves as a GABA transport protein involved in the utilization of GABA as a nitrogen source; catalyzes the transport of putrescine and delta-aminolevulinic acid (ALA); localized to the vacuolar membrane; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14985124]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015495 - gamma-aminobutyric acid:proton symporter activity [Evidence IGI] [PMID 8455553]; GO_function: GO:0015489 - putrescine transmembrane transporter activity [Evidence IGI] [PMID 14985124]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IGI] [PMID 14985124]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IEP,IGI] [PMID 8455553]; GO_process: GO:0015847 - putrescine transport [Evidence IGI] [PMID 14985124]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IGI] [PMID 8455553]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Uga4p
translation: MAEMGSALPTSGGLYWWTFKFAPEALKKPLCFLAGYSNTLGLVGGVVSIDYGFASMVLSVPSIADPHFTPNKYQTYGVFVACVLSHMVIGSVATTVMSRLQTFCIVINMLVIVITVIAVPIGAKNLRSGHEVFTDTTNLNDWPYGWTWMLSWMSAIWTIGAFDSCVHLSEEATNAATAVPFGIVLSISMCGVLGFAILAVLISSISDFSAVINTATGQPMAQIYLDALGKKWTIAMMIMLFIVQWFMGLSLLVAASRQTWAFSRDGALPLSWWVRKINMKLQVPVRAVIFDGVLCLVIGLLVLVDTAAALALFSLAPASNGLAWLLPIFCRHVWFDKDAFKPGPFYLGHFFSRLNGLFASVYLIFVVFVLSMWPASGPDPTPQDMNYTCVINGAVWVGSLLYYFLSARKWFEGPQQTLDTEEIHGVDLIATHSQHHHGEGHEHQHQHEQPQEVFEHAEKTPF
SIO_010081: AWJ20_2207
subclass of: SO_0000673
so part of: AWJ20_2207
location: 665026..666414
location: region:665026-666414:1
so has part: feature:665026-666414:1:exon

XP_018737079.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:665026-666414:1:exon

AWJ20_2208
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: GLE2
locus tag: AWJ20_2208
so part of: sequence
location: <666928..>668013
location: region:666928-668013:1
so has part: feature:666928-668013:1:exon
subclass of: SO_0000010

30034094
type: Gene
SIO_000068: ncbigene

position:666928:1
position: 666928
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:668013:1
position: 668013
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:666928-668013:1:exon

AWJ20_2208
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: GLE2
locus tag: AWJ20_2208
product: RNA export factor GLE2
transcript id: XM_018879136.1
SIO_010081: AWJ20_2208
subclass of: SO_0000673
so part of: AWJ20_2208
location: <666928..>668013
location: region:666928-668013:1
so has part: feature:666928-668013:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:666928-668013:1:exon

AWJ20_2208
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: GLE2
locus tag: AWJ20_2208
inference: similar to AA sequence:KEGG_Orthology:K14298
note: RNA export factor associated with the nuclear pore complex (NPC); associates with NUP116p; required for polyadenylated RNA export but not for protein import; homologous to S. pombe Rae1p and human RAE1; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15210706]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 8970155]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 9725905]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence IMP] [PMID 8970155]; GO_process: GO:0000973 - posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 20932479]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:2000728 - regulation of mRNA export from nucleus in response to heat stress [Evidence IMP] [PMID 15210706]; GO_process: GO:0000972 - transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 20098417]; GO_process: GO:0000972 - transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 20932479]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: RNA export factor GLE2
translation: MALKLNLDADITVENMPPNDTVSQLDFSPKSNLLSASSWDGIVRVYSVFSPEVDFNKKELNNANAALQASYITGYTHSQPVLTTGWLQDKYQIISGGCDKLVKIFDIGTGHVADIGHHEAPVSSVKSVMIGGSPIIVSSSWDKTLSYWDLRQQQAVCSIQLDGKALSMDSRDGVIVLVTSDRTTVKIDLSNPTVVSGTFKSRWELQPRVVKCLPGGECCIIGGTEGRCVVQYFRDVKSSFSFKCHRTTTGTDVHIYSVNDIAVNPIYGSTLTAGSDGSLQIWDHIKQCRLSYSGILPGSVSSCAYNNNGSILAYAVYYDWSKGYQFSRPNYPKLLKLHKIKPETVELWSNKNKIKIKIVYK
SIO_010081: AWJ20_2208
subclass of: SO_0000673
so part of: AWJ20_2208
location: 666928..668013
location: region:666928-668013:1
so has part: feature:666928-668013:1:exon

XP_018737080.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:666928-668013:1:exon

AWJ20_2209
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CSF1
locus tag: AWJ20_2209
so part of: sequence
location: complement(<668113..>675045)
location: region:668113-675045:-1
so has part: feature:668113-675045:-1:exon
subclass of: SO_0000010

30034095
type: Gene
SIO_000068: ncbigene

position:668113:-1
position: 668113
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:675045:-1
position: 675045
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:668113-675045:-1:exon

AWJ20_2209
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CSF1
locus tag: AWJ20_2209
product: Csf1p
transcript id: XM_018879137.1
SIO_010081: AWJ20_2209
subclass of: SO_0000673
so part of: AWJ20_2209
location: complement(<668113..>675045)
location: region:668113-675045:-1
so has part: feature:668113-675045:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:668113-675045:-1:exon

AWJ20_2209
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CSF1
locus tag: AWJ20_2209
note: Protein required for fermentation at low temperature; plays a role in the maturation of secretory proteins; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006113 - fermentation [Evidence IMP] [PMID 10781556]; GO_process: GO:0051604 - protein maturation [Evidence IMP] [PMID 19433630]
codon start: 1
product: Csf1p
translation: MNGSPFKGFYATKADPTVLLDYAHIDRDDETSILFVDGLVAHGHRMFGLPPTEPTYFCKWDFDIGDVLIAAPLEVAEAFGRIGRCLVYSYEDMENSLLIPEPPLYDVTFVSAKISKVKAQFSSEKYILELVTSAIDFRFNDLANERYSERVTLEIPSICTSILDRFPYANKAHSIKATFRTSLIVSNFGQKRNMELCREYQQDHIRLHDAPFHRCAFVLDSKRRKSPEYSVAGVRAGPVPSIPILGVPPPITRDTMPILDPNLGSGDLHRHNLGSDEAASSSASTASRFNESLSNSSTDISLSLSDDDESVRYRPGPGNHGHGLTRRPPYAVDTQKDVANNPFLPARGWKLLEKISADLLTDDDFNLQPTSNYNKGEVASPMSVLDPSTKYENLVIQFGSVEGDVSPFALGAINEIIESMGKEDMETSMDTLQIEFFKRLHMRHVTVLNPEVTNIRLIVPNISIKYGDLEIREESRNVLNLENHIYFDFHGLNLVVRLREQSSVDQMLQAQHSPIKHTVYLNLDNSTIGVRKGGETASNIFEGARENSPVVLQIDRTEFWWHEDQETTGSLRIKAVDSFVMSEQVRWVAEFLDNNIEELKRINVSSTNESNRPKIKKQQQDHNRTAYVLYQLAKAGESFNIQRDPSVLTRPAYIIQSPMHIRASTSWKIIMRLRHILRTVPSEWREYHTEFLLNGSFETPPDIKEQTINIFARWRNWEMTNISSSYVFGYVFMETSLKERLMSVATSTSLDIESIGLRLQYSESEDYLCFDYLKLLFNWSGKQYNEGPDSISPHDSVEEDNNRLLDFESVLSCLHIRSRYSYHLLEVYDSVSDMIFKKNPQEVVKTESTESTAAVESQAKNTPGVLFPMVAMRTSFLLDQLSSVFILPSAELDLQGHQLKLTAFFEQLDPANRIDAAVNVITNCSSFAIALNKRTPLYGTKLSQEKMLQILVNSSVLTYTSYGPMTTCSKYIAARSTEFNVSMEKDLDQQLDFASQLLRHDWRCLREHVKACQNSSEAPIPKKTDPALQYSGNLYIQLNAVHTKLTLRLLPSLSTIYQAENAFIKANHSEKEDFGVAELSIEEQLFRAGSNLADLEAGFELFAFKMSPAVVLIRKEELKGMKDHSLEVLGSVSELSFNTESVAQLLKLAQSGIWQDEAKALETHINNFKKEVCAVTMLGEPPATETVASQKSVKSLKPPLIRLSMTFGKTSMLIPAYGYNAVMEVDGFGIQASSFIRFEDGFAEGFVTRTPLFITTSMDEFKVLIYRKSSEQEKFVFIRLQTAMQLRLSQDGGKKIKHLLSLKSNFTRISFTPVIIQALVEVVSSFSEDMSKYSVHEKGANPATSEIGEPKISDELGRGFVDKFCRNCTASMLVNDVSVAWLFEDRGPTRFTSHPGLLFGYEVLDIQVVSFASHMVLKNVYLAPASERQIFLTKPVTSRTANSALLPNVELRAEFEHEVSLQLAGESLKLTLLPNCVVLVSMFLDSISAAQALIEQSALSADISTVPETPAPVKPLRFPFSWRLNLKFDGAVIELWDEGEFFDTGKVSKPTVKKNSMYSEEGDTTGPEDEDDFRIPSLSLQTPALKAIFEYNSEGNKGSKDRFGCEISITPTSNVIYSRVVPVVVSMTRLVKEVVRANHQFNTARKREKNLLVNKTVRKHSAAGNGPTTEDVELLFSAIDANIMIRFESQELTFSCLPTAKVSATVSVDRWFIGVHSGEVAKQGRIVTAAFSIQNFKASLQHQYSRDVSGYIALEDAMIMLTKGKENTPLESIRVAGKISSIIFDLNMKQMQDLEVFQNIWMPSGTLNTQQVREPRMEIASDPDYGMVMKFRRANTTVAIPWSIDFTIIRIQGYIDMGQSIGKFDCKLDRFWISLQKSLDWEQHLSSGIDLIFLQSHGRLDTTVSLEKPHLRTAIKWDKEVESFTVPLVQAVAGFSAFEVKISLEYHVFAMVYINSVHFAMSNQRDHNKILGDRLIAVGELGTVNFFFTALAASYFVDVV…
SIO_010081: AWJ20_2209
subclass of: SO_0000673
so part of: AWJ20_2209
location: complement(668113..675045)
location: region:668113-675045:-1
so has part: feature:668113-675045:-1:exon

XP_018737081.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:668113-675045:-1:exon

AWJ20_2210
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CSF1
locus tag: AWJ20_2210
so part of: sequence
location: complement(<675671..>678307)
location: region:675671-678307:-1
so has part: feature:675671-678307:-1:exon
subclass of: SO_0000010

30034097
type: Gene
SIO_000068: ncbigene

position:675671:-1
position: 675671
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:678307:-1
position: 678307
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:675671-678307:-1:exon

AWJ20_2210
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CSF1
locus tag: AWJ20_2210
product: Csf1p
transcript id: XM_018879139.1
SIO_010081: AWJ20_2210
subclass of: SO_0000673
so part of: AWJ20_2210
location: complement(<675671..>678307)
location: region:675671-678307:-1
so has part: feature:675671-678307:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:675671-678307:-1:exon

AWJ20_2210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CSF1
locus tag: AWJ20_2210
note: Protein required for fermentation at low temperature; plays a role in the maturation of secretory proteins; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006113 - fermentation [Evidence IMP] [PMID 10781556]; GO_process: GO:0051604 - protein maturation [Evidence IMP] [PMID 19433630]
codon start: 1
product: Csf1p
translation: MRVPLVHGVSVACWRRGRRPRRARRSGVAFGGVEMSSVSAQFTTVSILNNHEFSWVFIVDWILALVLTIFMIFYFNRAVGWLVSFLARWYLWRAHHAQLEVQSLQVSLLGGRIFFKNLSYVGTNEAICVLEGSFTWRYWLFYTRESLISGFLKDSHKGGSDCEPQDFLGATSDDGAGSGVSGTTATGASSPPNPSPARSSKNRKYPARLVFDVTGVEWFVFNRTPAYDALLDLAKKGSAVNSDQQEQEKQNQGDLDTNHKQNLQNLQKECSGAENTSGTTGPDSLGTVRSSSSASTSSSSSDQSNLTSYDNMMLRMLPLEIRCHNKGAMVIGNKDTSSLLIFHFESGVCSVDAAPPTSDLDKFKVIYKINTVKPILEMRPNVDYKGPDTVGFPSVSPLSILKSMSWQSVLAHLSRLRRSARKKSKKYKKKSKASANKIRGKSKNRTNPRVGRTTSRKTSFADGFGRFMTHRASTIYQTSSSSSSSEQDEEDDYYYDENYHPDENDDNDNDKEKPWRGLARYNIYYGNDNRDVSDDIPLDQLVDEYAKYSVILDAAEGTIAYHYDIPGKVPDGIVPSTDDPLGNGRLENSPGRDPEWGVDMSFTSCTIHYGPWADRQRVFIQNMLFPRSFTNSTPEPVRMKGQDRLGMEFKLFIEFKEDVIIRIPTREASKNQKFYASYKENPTANSLRAFGWLELKARHLSTMSYTGALVANKQGWNNNFRMDLKAPELRTSVNHGLVFSADRHTIQSTMKSPLQWNGIQEWDFRFNSEKVETFFLREHVSLLTDLITDFASGPPVTYNQFVPFRYTIQWHISDYGIYLNVNDKNIINNPSDFDDNTFVSFQGQSVDIDILIPMEQVSSIKNRVDFKIAVSDNSVSKG
SIO_010081: AWJ20_2210
subclass of: SO_0000673
so part of: AWJ20_2210
location: complement(675671..678307)
location: region:675671-678307:-1
so has part: feature:675671-678307:-1:exon

XP_018737082.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:675671-678307:-1:exon

AWJ20_2211
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SAC7
locus tag: AWJ20_2211
so part of: sequence
location: complement(<679109..>682111)
location: region:679109-682111:-1
so has part: feature:679109-682111:-1:exon
subclass of: SO_0000010

30034098
type: Gene
SIO_000068: ncbigene

position:679109:-1
position: 679109
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:682111:-1
position: 682111
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:679109-682111:-1:exon

AWJ20_2211
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SAC7
locus tag: AWJ20_2211
product: Sac7p
transcript id: XM_018879140.1
SIO_010081: AWJ20_2211
subclass of: SO_0000673
so part of: AWJ20_2211
location: complement(<679109..>682111)
location: region:679109-682111:-1
so has part: feature:679109-682111:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:679109-682111:-1:exon

AWJ20_2211
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SAC7
locus tag: AWJ20_2211
note: GTPase activating protein (GAP) for Rho1p; regulator of a Tor2p-mediated, Rho1p GTPase switch that controls organization of the actin cytoskeleton; negative regulator of the RHO1-PKC1-MAPK cell integrity (CWI) and membrane fluidity homeostasis signaling pathways; potential Cdc28p substrate; SAC7 has a paralog, BAG7, that arose from the whole genome duplication; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 23878277]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IDA] [PMID 9038344]; GO_process: GO:0035024 - negative regulation of Rho protein signal transduction [Evidence IGI] [PMID 9038344]; GO_process: GO:0090038 - negative regulation of protein kinase C signaling [Evidence IMP] [PMID 10625705]; GO_process: GO:0090038 - negative regulation of protein kinase C signaling [Evidence IGI] [PMID 11713681]; GO_process: GO:0090038 - negative regulation of protein kinase C signaling [Evidence IMP] [PMID 12207708]; GO_process: GO:0032321 - positive regulation of Rho GTPase activity [Evidence IDA] [PMID 9038344]; GO_process: GO:0032956 - regulation of actin cytoskeleton organization [Evidence IGI] [PMID 2183030]; GO_process: GO:0032956 - regulation of actin cytoskeleton organization [Evidence IGI] [PMID 9038344]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IGI,IMP] [PMID 10625705]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IGI] [PMID 12949174]; GO_process: GO:0007165 - signal transduction [Evidence IEA]
codon start: 1
product: Sac7p
translation: MASAASPPSKSSLATWWKQFKQRPHLKDDELDYLSDSEGASGSGSASAEGGASGGIYVSGRPKLRHLSHSSSAIGTIRSPSNQSVSVNGSGGGASGYGSASSGIGGGSGYNSAVGTNAMSPETFQADSGASDNAIFGVPLKQSVDYAWVPISLTDPETGESFKYGHIPVIVAKCGRYLKKNATSVEGIFRLSGSARRIKELQVIFSTPTRYGKDLDWTGFNVHDAANVLRRYLNNLPEPIVPLQFYEQFRDPLREYPRVVEYLTQQSAATSAALGAGASGLSSLPSYRREQAQAQAFAQAQAQAQAAAGNQGGDDTSNHGPTIPLSASVPRSITLGLSNEESTSRSRTGSGSSIGAGTTGSIGTGQATASSTTLSASPGQSPFLPARTSSAQQQLQSTQQNGHTSTQPSQASQTTPEIGSILHSDINAAVDRYQHLISILPPLNRQLLMYILDLLSVFAARAEENLMPAANLAAIFQPSILSHPNHDMSPQEYHLSRSAIEFLVQHSNKFLTHVENEAIRQHQQDKRDGKTTDLADPRAASSTAGAPGSTGLEPVNINSATESTPESTTTSGNGSVSRTSGTTTTFVTPNPYSKQTYENGSGGSSGGGLTVHRRRHSKSLSSVGSSGPPVPIVGSNYHSIQRVPVASISQEPNTTTAAAGGAPPPLQYQRQPSDDSNGFLTTIKRTVSITRRPSQRRSTSGSSTSSAARLRSSSGAKPTPGTLGGSVVSTPTAQSPAPQAVNIPEIITTNASQVDITTPSPGFEAVSLQNTPGASPPLEPTRSPDSKKGLSNLFSRKSKSPNRGRASSDDYTRPEPSNFSNQSIDQAMAMLSTTGTTDLGSGSSGVPGGMHHIQSSLPPPQQPFLHHSNHSNSSLGQSSTTSGGGAGDSDYDTGNPRPQDDSGSPNRKTKSRWRRSLMMFNMAGVGDSFHDLSNTSTTSSYGASHVPDLQTGDNLSPTNSAIRSQSPGRWFKKKALNRGRSSSRDGNHPDPDAPSDTAPQ
SIO_010081: AWJ20_2211
subclass of: SO_0000673
so part of: AWJ20_2211
location: complement(679109..682111)
location: region:679109-682111:-1
so has part: feature:679109-682111:-1:exon

XP_018737083.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:679109-682111:-1:exon

AWJ20_2212
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RVS167
locus tag: AWJ20_2212
so part of: sequence
location: complement(<685524..>686900)
location: region:685524-686900:-1
so has part: feature:685524-686900:-1:exon
subclass of: SO_0000010

30034099
type: Gene
SIO_000068: ncbigene

position:685524:-1
position: 685524
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:686900:-1
position: 686900
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:685524-686900:-1:exon

AWJ20_2212
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RVS167
locus tag: AWJ20_2212
product: amphiphysin
transcript id: XM_018879141.1
SIO_010081: AWJ20_2212
subclass of: SO_0000673
so part of: AWJ20_2212
location: complement(<685524..>686900)
location: region:685524-686900:-1
so has part: feature:685524-686900:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:685524-686900:-1:exon

AWJ20_2212
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RVS167
locus tag: AWJ20_2212
inference: similar to AA sequence:KEGG_Orthology:K12562
note: Actin-associated protein with roles in endocytosis and exocytosis; interacts with Rvs161p to regulate actin cytoskeleton, endocytosis, and viability following starvation or osmotic stress; recruited to bud tips by Gyl1p and Gyp5p during polarized growth; homolog of mammalian amphiphysin; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 10393809]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 16239147]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 24390141]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 10393809]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0008092 - cytoskeletal protein binding [Evidence IPI,ISS] [PMID 10388809]; GO_function: GO:0008289 - lipid binding [Evidence IDA] [PMID 20610658]; GO_process: GO:0051666 - actin cortical patch localization [Evidence IMP] [PMID 8590801]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 8590801]; GO_process: GO:0060988 - lipid tube assembly [Evidence IDA] [PMID 20610658]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IGI,IPI] [PMID 15802519]
codon start: 1
product: amphiphysin
translation: MNIGTHTKDLVYIDAERRFKELEDETKKLHAESTKYSEAVNGMLKHQIEFSKAVEEIYKPISGRMSDPNSTRPEGNPEGIQACEQYRDVVFELQATLKPELEMIETRIVAPADELLKVIKAIRKMSVKRDHKQLDLDRHTATLTKLQGKKERSIKDEKNMYTAENNVEIAKQEYDYFNNLLKEELPKLFELEAEFIRPLFQSFYYMQLNIFYTLYNRMEEMKIPYFDLTADIEESFNRKRGDIQEQAEAIGITHFRVGHAKSKLELTKKKYGKETEAGAAGAAAGAGAYGAGAYGAGAAAAGSEGVPPPYQGYGQQPPQEKYVYQAPGAPAAAGYGQQPAYGQPAAAPAGYGQQPAYGQPAATAAQPVYGQPAAAAAAAAVPTAYSPSPVSPVAASPVAPVEYCTALYDYEAQAHGDLSIHAGDRIEIVQRTADPNGWWTGKLNGVQGVFPGNYVQLG
SIO_010081: AWJ20_2212
subclass of: SO_0000673
so part of: AWJ20_2212
location: complement(685524..686900)
location: region:685524-686900:-1
so has part: feature:685524-686900:-1:exon

XP_018737084.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:685524-686900:-1:exon

AWJ20_2213
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: UTP10
locus tag: AWJ20_2213
so part of: sequence
location: complement(<690120..>694215)
location: region:690120-694215:-1
so has part: feature:690120-694215:-1:exon
subclass of: SO_0000010

30034100
type: Gene
SIO_000068: ncbigene

position:690120:-1
position: 690120
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:694215:-1
position: 694215
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:690120-694215:-1:exon

AWJ20_2213
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: UTP10
locus tag: AWJ20_2213
product: Utp10p
transcript id: XM_018879142.1
SIO_010081: AWJ20_2213
subclass of: SO_0000673
so part of: AWJ20_2213
location: complement(join(<690120..690135,690224..>694215))
location: region:690120-694215:-1
so has part: feature:690224-694215:-1:exon
so has part: feature:690120-690135:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:690224-694215:-1:exon

position:690224:-1
position: 690224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:690120-690135:-1:exon

position:690135:-1
position: 690135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

AWJ20_2213
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: UTP10
locus tag: AWJ20_2213
inference: similar to AA sequence:KEGG_Orthology:K14550
note: Nucleolar protein; component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA; mutant has increased aneuploidy tolerance; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 17652137]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 17652137]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030688 - preribosome, small subunit precursor [Evidence IDA] [PMID 17652137]; GO_component: GO:0033553 - rDNA heterochromatin [Evidence IDA] [PMID 15489292]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_component: GO:0034455 - t-UTP complex [Evidence IDA] [PMID 17515605]; GO_function: GO:0030515 - snoRNA binding [Evidence IPI] [PMID 12068309]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 17652137]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 17652137]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 17652137…
codon start: 1
product: Utp10p
translation: MISLKDSGANDQEIVGRFLPYCSNAISLKKDPDAQTAAYIILAVLGSQFRLNKEVKSAAIQSIILNWSRASVKSGFSCITQLVKLDDTLEPFEKEDWDAIEKIRAIDTEINALSEQYDISQFIVRWALSVLKYSPEKIYLVQSVLASGKFGISHGLDIVLRASIKLATQASDANVKEQLVSLFEFVLSSEEGAKGFKEVLANAGVSFDQLELGVQSSIQTKFAFVRGQEESAAVDDDVEMTQAEELTATVTLTEELKSRSPVKVASFLSLDTNKEFRELVNLFTLGLQSSQSDILKSLQIDAESQPSFLVRIWTGAYANLARVRALELFSAIVEENPSVDYQAVIPFLLVALSDESERVRRGASSIIRSLATRYPIKKPTVWALDNLYGEGDQSSEVKWLTSTNIKVLLNDVLLPNIDECYLDADYISKRIGEVASDKEFKSLQEPLLTFLTSHVLSMKLPQMKVSLLQILRKWAKSSSTSKLLTPLLTSWIDERDTWVSICEEERVSFDKLETAVVSIVSSGEKSGIAFLEQAIRSSSNLSDKAGQRLVYLWKSAALKPDTQLGLLRFLSDVAVDESITYDSLEVLNNIEITTPHFVSLLDDCKLERDSAAANSSGSRSGTASPAVPKRRRRSSNSSREKFRGSELISFAEKHLRKLTVILELLDKNKSEGPSCMTLLSQLFTILGEILSLGADSNLPSLYTEQLLANCMISAVEQLKHQRHTKIDSALVRVDIIVSCIRSSSSPQVQNRFLLLVASLAELAPEVVLHSVMPIFTFMGANTVRQDDEFSAHVIQQTISQVIPALVSNNNGTSNEEIEFLLLSFVAAFAHIPRHRRVKLFGALVRTLKPEASLHKLLILFGNKYSEAKIKRKSADLKSYVQFGTTFVRSFTVVDQVTAIRNFLAVSESIPLTEGETPSEGGQLFTALTNGNGTNVTDNATLKANVYEFLTNVFGDDDIVGGYPSLRAQILKEEADKAVVMDICSEIIEQLLKTRKATSDNTELSAVPSLAENIFNFLGKMLEVLPMGSFVEVVESLLASSDIDVKVHLLALVQSKFDVELSTDEDAVKAAINCTALLKNYLSSTEDAHIIQLVLDDLDVIIAKFGSQMSPEELLAALTAIVGERGLLNSDIKVFVAAVAASSSISTVLGARMIGLFGKIVPVVFKRFETSLALENKDDAKLIQLATFGLVSGLVKRIPSFMTSSVKKVFEFVLVSNATTVDVRTRVMDVIRNNIEDKQVISALTGTWKYAVDNGMDSINIFLDSLDKVIDVSPKKVVSSQSSIIIGFLLQAFEVRGQGNYGKEDTNRIEAKAVSSAIKVIMKLNDKTFQPFYLEA
SIO_010081: AWJ20_2213
subclass of: SO_0000673
so part of: AWJ20_2213
location: complement(join(690120..690135,690224..694215))
location: region:690120-694215:-1
so has part: feature:690224-694215:-1:exon
so has part: feature:690120-690135:-1:exon

XP_018737085.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:690224-694215:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:690120-690135:-1:exon

AWJ20_2214
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2214
so part of: sequence
location: <696342..>697679
location: region:696342-697679:1
so has part: feature:696342-697679:1:exon
subclass of: SO_0000010

30034101
type: Gene
SIO_000068: ncbigene

position:696342:1
position: 696342
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:697679:1
position: 697679
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:696342-697679:1:exon

AWJ20_2214
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2214
product: hypothetical protein
transcript id: XM_018879143.1
SIO_010081: AWJ20_2214
subclass of: SO_0000673
so part of: AWJ20_2214
location: <696342..>697679
location: region:696342-697679:1
so has part: feature:696342-697679:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:696342-697679:1:exon

AWJ20_2214
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2214
codon start: 1
product: hypothetical protein
translation: MPDLSESSEFMRMQTESARPGSSSQAGHVPGTYNKSLKSIASNNGNGSSTAVDSVGGFEGLEHRQIRSNDIELESAPRYASESDPYSLSSGLKTKSELKRIRSNEDGKSRSVGRKLQQFYESQNEQIEMLLKPVEDHRAEAKQAEGDNQLKYRIAVYGSFAANIILAALQIYGAASSGSLSLITTMADAIFDPMSNITLILANRAVNHVDSRRFPSGKARIETVGNITFCFLMSAVGAIIIVLSARDIAGGNSEETKKFHLPSVIAVAVAFCTKFALWLYCWALKDTYSQVNILWQDHRNDLFINGFGILTSVAGSKLRWWIDPMGAIILSVFIDIVWLRTATQEFLLLIGQTADNSIQQLITYLAVTHSPEIDQVDTVRVYHSGPRLIAEVDVVMNENMTLKETHDIAEALQFKLESLPDVERAYVHVDYETSHKPEHFLKKEL
SIO_010081: AWJ20_2214
subclass of: SO_0000673
so part of: AWJ20_2214
location: 696342..697679
location: region:696342-697679:1
so has part: feature:696342-697679:1:exon

XP_018737086.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:696342-697679:1:exon

AWJ20_2215
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ATG11
locus tag: AWJ20_2215
so part of: sequence
location: <698523..>701360
location: region:698523-701360:1
so has part: feature:698523-701360:1:exon
subclass of: SO_0000010

30034102
type: Gene
SIO_000068: ncbigene

position:698523:1
position: 698523
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:701360:1
position: 701360
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:698523-701360:1:exon

AWJ20_2215
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ATG11
locus tag: AWJ20_2215
product: autophagy protein ATG11
transcript id: XM_018879144.1
SIO_010081: AWJ20_2215
subclass of: SO_0000673
so part of: AWJ20_2215
location: <698523..>701360
location: region:698523-701360:1
so has part: feature:698523-701360:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:698523-701360:1:exon

AWJ20_2215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ATG11
locus tag: AWJ20_2215
inference: similar to AA sequence:KEGG_Orthology:K08330
codon start: 1
product: autophagy protein ATG11
translation: MTQLKLEAIADGQEVFLFDKSLISPGAKTYAENGLVGKEDRGPPLALPPRPAVNTTSSLSDRFMTHSDWTQKCLLVGKDCGNRVNELHMSINIIKRGLKTSLEHMMRHSQGLKKSFDSKVDFAVDLDQNMQATGEWEVYLEKVKKIELLPAFREQGEGRDRLSSWIDESVIRKANKQCSEFDQKIQNNISHLVKVVNEVIERSTRLEQDAMAMASKDAESDVPAEATSRHVRELLQDLTALANKIQRDSESIGGVSEQTAVRIENLHKREFFPQIEATVNELIGIHEEWQKAKVKCQNLAIGYLSTLSHIQYDTSMVRPELQKLTMLLQTTEDLRATVAQVIDLPFLYGALIIETVRRNHWTGYIRENVSQTAESLATKRLDEIKRRKKWKNHYGKILPKVVDIINEDIAEIEVNFVSGEVNGDGDASSTDSDQVQAYIKLLTSLGLREAAEELEQEHQSMLSQLESDIADKNLAKLETTKQSDHHTDTSSPAKVFKSGTLAEAYTDENAALTAKLKGYESRIRILEDLLHKQQFRGESTRSEANRRSASRDKSHSPGSPRMIERLHFLETQKSNDSKIIAQLEQEKRELAESLSAKELALKDVMTVKSDLLANMLSQETEFIQERKAHHEEVNELKSRIDELELDLDRADEKLQLENDQLREEVDSYKEKIEQLEQENSNLKQQEEKLHKKIEYYDTRTRDLSQRLFTGFKRSCEVLESMGLQVTKEMDGNLITFKVNRVRGLGRRSSAARSEILEQSLEENGNGNMVSNPTLNEATPEDLRVLYWMDGEPDEERYREFINEIYIDYDIFRDSACKRLRDVEHLARKLQKESKHLRERKTQIEEELQSRLSLRSFKVGDLALFLPTRDPTRVPNPWAAFNVNAPHYFLKQEDSHQLSNREYLVGRITHIEERVVNKSLDNDEDNPFDLSDGLRWYLLDAVPAEW
SIO_010081: AWJ20_2215
subclass of: SO_0000673
so part of: AWJ20_2215
location: 698523..701360
location: region:698523-701360:1
so has part: feature:698523-701360:1:exon

XP_018737087.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:698523-701360:1:exon

AWJ20_2216
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: KES1
locus tag: AWJ20_2216
so part of: sequence
location: <703797..>704744
location: region:703797-704744:1
so has part: feature:703797-704744:1:exon
subclass of: SO_0000010

30034103
type: Gene
SIO_000068: ncbigene

position:703797:1
position: 703797
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:704744:1
position: 704744
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:703797-704744:1:exon

AWJ20_2216
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: KES1
locus tag: AWJ20_2216
product: oxysterol-binding protein KES1
transcript id: XM_018879145.1
SIO_010081: AWJ20_2216
subclass of: SO_0000673
so part of: AWJ20_2216
location: <703797..>704744
location: region:703797-704744:1
so has part: feature:703797-704744:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:703797-704744:1:exon

AWJ20_2216
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: KES1
locus tag: AWJ20_2216
note: One of seven members of the yeast oxysterol binding protein family; involved in negative regulation of Sec14p-dependent Golgi complex secretory functions, peripheral membrane protein that localizes to the Golgi complex; KES1 has a paralog, HES1, that arose from the whole genome duplication; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 11916983]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8978672]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 11916983]; GO_function: GO:0008289 - lipid binding [Evidence IDA,IMP] [PMID 20008566]; GO_function: GO:0008142 - oxysterol binding [Evidence ISS] [PMID 11238399]; GO_function: GO:0008142 - oxysterol binding [Evidence IMP,IPI] [PMID 16136145]; GO_function: GO:0070300 - phosphatidic acid binding [Evidence IDA] [PMID 20729555]; GO_function: GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding [Evidence IMP,IPI] [PMID 11916983]; GO_function: GO:0070273 - phosphatidylinositol-4-phosphate binding [Evidence IDA] [PMID 20729555]; GO_function: GO:0015248 - sterol transporter activity [Evidence IDA,IMP] [PMID 20008566]; GO_process: GO:0035621 - ER to Golgi ceramide transport [Evidence IMP] [PMID 24213531]; GO_process: GO:0006897 - endocytosis [Evidence IGI] [PMID 15173322]; GO_process: GO:0006887 - exocytosis [Evidence IGI] [PMID 17004323]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0030011 - maintenance of cell polarity [Evidence IGI] [PMID 17004323]; GO_process: GO:0010922 - positive regulation of phosphatase activity [Evidence IDA] [PMID 21295699]; GO_process: GO:0006892 - post-Golgi vesicle-mediated transport [Evidence IGI] [PMID 11916983]; GO_process: GO:0006892 - post-Golgi vesicle-mediated transport [Evidence IGI] [PMID 8978672]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evide…
codon start: 1
product: oxysterol-binding protein KES1
translation: MVLVLKWFIGTLRGQYCSRNEKLGSEKKPLNPFLGELFVGKWAGDAESGETVLASEQVSHHPPITGYSIWNDKHGVYLNGYNGMKARIATTTISVKQNGHATYYLKAFDETYIISLPALHIEGILFGAPYVELEGKSFIHGSSGYSVSIEYTGKGYFSGKKNSFKAKIYKGSEDAALYRVSGQWSESSKIKDEKTGVETPFLDSLKITSESLQVKPEAEQSELESRRAWSKVAAAIREGDYELIHQEKSKIENDQRELRKTEQAEGKTWPSKWFEEVPVSNAPEVYLTLSKAAGVEPETTWTFVRSKFDAADVKP
SIO_010081: AWJ20_2216
subclass of: SO_0000673
so part of: AWJ20_2216
location: 703797..704744
location: region:703797-704744:1
so has part: feature:703797-704744:1:exon

XP_018737088.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:703797-704744:1:exon

AWJ20_2217
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: NHP6B
locus tag: AWJ20_2217
so part of: sequence
location: <708842..>709147
location: region:708842-709147:1
so has part: feature:708842-709147:1:exon
subclass of: SO_0000010

30034104
type: Gene
SIO_000068: ncbigene

position:708842:1
position: 708842
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:709147:1
position: 709147
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:708842-709147:1:exon

AWJ20_2217
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: NHP6B
locus tag: AWJ20_2217
product: Nhp6bp
transcript id: XM_018879146.1
SIO_010081: AWJ20_2217
subclass of: SO_0000673
so part of: AWJ20_2217
location: <708842..>709147
location: region:708842-709147:1
so has part: feature:708842-709147:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:708842-709147:1:exon

AWJ20_2217
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: NHP6B
locus tag: AWJ20_2217
note: High-mobility group (HMG) protein; binds to and remodels nucleosomes; involved in recruiting FACT and other chromatin remodelling complexes to the chromosomes; functionally redundant with Nhp6Ap; required for transcriptional initiation fidelity of some tRNA genes; homologous to mammalian HMGB1 and HMGB2; NHP6B has a paralog, NHP6A, that arose from the whole genome duplication; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 3169249]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0008301 - DNA binding, bending [Evidence IDA] [PMID 7721780]; GO_function: GO:0031491 - nucleosome binding [Evidence ISS] [PMID 11432837]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0070898 - RNA polymerase III transcriptional preinitiation complex assembly [Evidence IGI] [PMID 11287614]; GO_process: GO:0070898 - RNA polymerase III transcriptional preinitiation complex assembly [Evidence IDA] [PMID 17178828]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IGI] [PMID 14739928]; GO_process: GO:0001195 - maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase III promoter [Evidence IDA] [PMID 16407207]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IGI] [PMID 8946917]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]
codon start: 1
product: Nhp6bp
translation: MPKEPGRRRTKEEIRKKKKDPNAPKRALSAYMYFANENRDNIKNENPDISFGQIGKVLGEQWKALTDAEKVPYEAKATQDKKRYEEEKAAYQASKAQEYSE
SIO_010081: AWJ20_2217
subclass of: SO_0000673
so part of: AWJ20_2217
location: 708842..709147
location: region:708842-709147:1
so has part: feature:708842-709147:1:exon

XP_018737089.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:708842-709147:1:exon

AWJ20_2218
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: UBP16
locus tag: AWJ20_2218
so part of: sequence
location: complement(<709876..>712212)
location: region:709876-712212:-1
so has part: feature:709876-712212:-1:exon
subclass of: SO_0000010

30034105
type: Gene
SIO_000068: ncbigene

position:709876:-1
position: 709876
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:712212:-1
position: 712212
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:709876-712212:-1:exon

AWJ20_2218
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: UBP16
locus tag: AWJ20_2218
product: Ubp16p
transcript id: XM_018879147.1
SIO_010081: AWJ20_2218
subclass of: SO_0000673
so part of: AWJ20_2218
location: complement(<709876..>712212)
location: region:709876-712212:-1
so has part: feature:709876-712212:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:709876-712212:-1:exon

AWJ20_2218
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: UBP16
locus tag: AWJ20_2218
inference: similar to AA sequence:KEGG_Orthology:K11874
note: Deubiquitinating enzyme anchored to the outer mitochondrial membrane; probably not important for general mitochondrial functioning, but may perform a more specialized function at mitochondria; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 8982460]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 12914939]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence TAS] [PMID 8982460]; GO_process: GO:0016579 - protein deubiquitination [Evidence TAS] [PMID 8982460]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]
codon start: 1
product: Ubp16p
translation: MNVLRRKKKSGKYTVGLTNRANDCFANSNIQALAAVPGLVDYLLQLNAAAIALSNPDAVRMSVPGTSVPGNTTAEKRKLASSTEKSLPQTPDSQPAVAIADSPAAGGTATPASSAKTNTNNSGATTDIPTRPTTPSAQIATAVTPKSPSGGYGASMPASNAQTLTPLLSNALLRIIKELNEPILVPKTLSPWTFLGVLEKIYKSRISRNQHDAHELLHLILETLENEYDKIVKESRSRTEKQSIWGNIAASHPSPLEDAELESEQEAPKSFAFSGSTIDRITCSRCGYSPPATPSAFLVLSLMVPQKKSAQLTDLLDGLSSPEYIQDYGCQLCRLKHASMMKNGDQFKQYLSDPSKLPSELEDKLPKNIVSPIAKSTRFHRLPDVLAIHLSRSIYGGFGASRNSCKVSTKEFIELTENETGNIIRYKLMAMIRHKGTHQMGHYECFRRKNLDTWRDILQMLDEDEKDREIKKGLRLHKQQTPSVSSFQGSGTGTGTAQSATPTPRQLATTASTAGTISANSSPRLDLATGAINGNYGGTAAVPTATATPVASSPTIASMNSSNSSSGASSSITTKSSATEITNYTMSTTPSSPLTTITTPSSSIPETAFSSSATTGDSQSPAPSLASDNVTLSSASSSISGVSAASAPLRLTADTPSSPALSPPPSAIPLPYPADRSMPSPASVSISEFASAEISLDAIRAVPLSAATLNGTKRPVFTAPTTPTRSPTPTLLSVQQNVSPPSHHEWWKVSDDKVWECTTKEVLREESGAYLLFYERLT
SIO_010081: AWJ20_2218
subclass of: SO_0000673
so part of: AWJ20_2218
location: complement(709876..712212)
location: region:709876-712212:-1
so has part: feature:709876-712212:-1:exon

XP_018737090.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:709876-712212:-1:exon

AWJ20_2219
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2219
so part of: sequence
location: <713753..>714229
location: region:713753-714229:1
so has part: feature:713753-714229:1:exon
subclass of: SO_0000010

30034106
type: Gene
SIO_000068: ncbigene

position:713753:1
position: 713753
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:714229:1
position: 714229
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:713753-714229:1:exon

AWJ20_2219
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2219
product: putative heme/steroid binding protein
transcript id: XM_018879148.1
SIO_010081: AWJ20_2219
subclass of: SO_0000673
so part of: AWJ20_2219
location: <713753..>714229
location: region:713753-714229:1
so has part: feature:713753-714229:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:713753-714229:1:exon

AWJ20_2219
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2219
note: potential heme/steroid binding protein; similar to A. thaliana F17I14_130; allele of CaO19.4522
codon start: 1
product: putative heme/steroid binding protein
translation: MSEQPQLGPPPDRKKMLAPPPGNAQSTLFPSINSAQRASGSRAISGPQPAAAARRKKVALQPGHSALDWANLRNSGANLRVGTCSPPAAGAAPQTPLLLSLRSSRVSGVPFKGSRGLSDASGDDSSGARGATGSGAEPQPTEAHSPVPYSDTNRFSGS
SIO_010081: AWJ20_2219
subclass of: SO_0000673
so part of: AWJ20_2219
location: 713753..714229
location: region:713753-714229:1
so has part: feature:713753-714229:1:exon

XP_018737091.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:713753-714229:1:exon

AWJ20_2220
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2220
so part of: sequence
location: <717982..>720456
location: region:717982-720456:1
so has part: feature:717982-720456:1:exon
subclass of: SO_0000010

30034108
type: Gene
SIO_000068: ncbigene

position:717982:1
position: 717982
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:720456:1
position: 720456
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:717982-720456:1:exon

AWJ20_2220
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2220
product: RNAPII degradation factor (predicted)
transcript id: XM_018879150.1
SIO_010081: AWJ20_2220
subclass of: SO_0000673
so part of: AWJ20_2220
location: <717982..>720456
location: region:717982-720456:1
so has part: feature:717982-720456:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:717982-720456:1:exon

AWJ20_2220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2220
codon start: 1
product: RNAPII degradation factor (predicted)
translation: MSSKKYTSALTTLRELFPDWKDDDLLAVLEETSGDIEQSVSLIAEGHVSQWGQVKKKTRESTRGKSKGPANADGKESNTTSAHRHNGSAASHGHGSSTHGSNNTGTGAPRGQRSERGRSRAPKRVNGSTHTHTNANSTTSSAAATANNNNTSDATSTPAAWETDAAGVPAGSAVAAASIAASNASSTSTTDSTAATTNSSTSESAPSAPKTRSWADALSKKSTTAPVAAKRQSQPQQHQQQERAAQKPQPSASADIDNTTTTTTTTSSSLPESNTAATSTPAAAATAASTETTAPVSNSAPTAVPALPVAPQKLSWAAIAKPKEEKKPAPAAPVASTATTNASPASAAASETPVAAATSTETTTQPEQTEAFTQEPAAETVSEPIPVSIPPGLESKPEPAVPAATSNTASTGAAAAAAPRRVTQEVPVILPGSVSRTVDRVGVQFGSLDLNEQTPATESASQTAQPAQQQAQAQQQQQQQQIASETANSSATSTAPAGIPEQGQTAGAAAAAQPAYYGYGQTQAQTAGSVQQKPYENAYSQNHYVYPGTHPGSHPGFATGYSVPTDYQSPYGAGVSDQRNSYNNYYYQQQAAAAGQQQPGLTGNQQQTQSQHNGSLDSSRYGTSAGATGAEAGANSAVAGGAGVAQSSNANSPASVAAGVYQQPSMNPYYMSPAYAAYYYQTYGYNQQAALAAQYGSPAGPQKGFFNQQQSYYDYRQPGVGGQVQGQQGQSQQQAQGQQQGQSQGQQQQQSQAQGQTSQAGGLTGISDFLQREDTSKQTPGSPQQHQAGLPQQPQYPVQQNLYSYAGYGQYSGQQGQRQGWGYN
SIO_010081: AWJ20_2220
subclass of: SO_0000673
so part of: AWJ20_2220
location: 717982..720456
location: region:717982-720456:1
so has part: feature:717982-720456:1:exon

XP_018737092.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:717982-720456:1:exon

AWJ20_2221
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CPA1
locus tag: AWJ20_2221
so part of: sequence
location: complement(<720792..>722135)
location: region:720792-722135:-1
so has part: feature:720792-722135:-1:exon
subclass of: SO_0000010

30034109
type: Gene
SIO_000068: ncbigene

position:720792:-1
position: 720792
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:722135:-1
position: 722135
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:720792-722135:-1:exon

AWJ20_2221
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CPA1
locus tag: AWJ20_2221
product: carbamoyl-phosphate synthase (glutamine-hydrolyzing) CPA1
transcript id: XM_018879151.1
SIO_010081: AWJ20_2221
subclass of: SO_0000673
so part of: AWJ20_2221
location: complement(<720792..>722135)
location: region:720792-722135:-1
so has part: feature:720792-722135:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:720792-722135:-1:exon

AWJ20_2221
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CPA1
locus tag: AWJ20_2221
inference: similar to AA sequence:KEGG_Orthology:K01956
note: Small subunit of carbamoyl phosphate synthetase; carbamoyl phosphate synthetase catalyzes a step in the synthesis of citrulline, an arginine precursor; translationally regulated by an attenuator peptide encoded by YOR302W within the CPA1 mRNA 5'-leader; GO_component: GO:0005951 - carbamoyl-phosphate synthase complex [Evidence IDA] [PMID 206535]; GO_component: GO:0005951 - carbamoyl-phosphate synthase complex [Evidence ISS] [PMID 6086650]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004088 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [Evidence IEA]; GO_function: GO:0004088 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [Evidence IMP] [PMID 6086650]; GO_function: GO:0004088 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [Evidence IDA] [PMID 8626695]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence IMP] [PMID 9290206]; GO_process: GO:0070409 - carbamoyl phosphate biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0006543 - glutamine catabolic process [Evidence IEA]
codon start: 1
product: carbamoyl-phosphate synthase (glutamine-hydrolyzing) CPA1
translation: MLRTLSKSVSAGLKLNASPLARLSSKSYSTVNTALFNSRSDLDRATFTIRDGPVFHGKSFGANTNISGEAVFSTGMVGYPESMTDPSYRGQILVFTQPLIGNYGVPSSTARDEFGLLKYFESPHCQCIGVVVADAAMQYSHWTAVESLGDWCKREGVAAITGVDTRSIVTYLREQGSSLARITVGEEYDADEDEAFMDPGAINLVHKVSTKQPFHVPAATIPGQENIHVAVIDCGVKENILRSLVSRGASITVFPYDYPIHKISHHFDGIFISNGPGDPTHCSSTVYNLKKTMETYDGPIFGICLGHQLLALAAGGKTIKLKYGNRAHNIPALDLMTGKCHITSQNHGYAVDVATLPSEFKPYFINLNDQSNEGMIHESRPIFSTQFHPEAKGGPLDSAFLFDKYLADIQAFKQKKSAQGLVNAAPSPLFVDILPKERVGVEINPQA
SIO_010081: AWJ20_2221
subclass of: SO_0000673
so part of: AWJ20_2221
location: complement(720792..722135)
location: region:720792-722135:-1
so has part: feature:720792-722135:-1:exon

XP_018737093.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:720792-722135:-1:exon

AWJ20_2222
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: DUS4
locus tag: AWJ20_2222
so part of: sequence
location: complement(<724509..>725435)
location: region:724509-725435:-1
so has part: feature:724509-725435:-1:exon
subclass of: SO_0000010

30034110
type: Gene
SIO_000068: ncbigene

position:724509:-1
position: 724509
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:725435:-1
position: 725435
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:724509-725435:-1:exon

AWJ20_2222
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: DUS4
locus tag: AWJ20_2222
product: Dus4p
transcript id: XM_018879152.1
SIO_010081: AWJ20_2222
subclass of: SO_0000673
so part of: AWJ20_2222
location: complement(<724509..>725435)
location: region:724509-725435:-1
so has part: feature:724509-725435:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:724509-725435:-1:exon

AWJ20_2222
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: DUS4
locus tag: AWJ20_2222
inference: similar to AA sequence:KEGG_Orthology:K05545
note: Dihydrouridine synthase; member of a widespread family of conserved proteins including Smm1p, Dus1p, and Dus3p; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IEA]; GO_function: GO:0017150 - tRNA dihydrouridine synthase activity [Evidence ISS] [PMID 12003496]; GO_function: GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IMP] [PMID 14970222]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0002943 - tRNA dihydrouridine synthesis [Evidence IEA]; GO_process: GO:0006400 - tRNA modification [Evidence ISS] [PMID 12003496]; GO_process: GO:0006400 - tRNA modification [Evidence IMP] [PMID 14970222]; GO_process: GO:0008033 - tRNA processing [Evidence IEA,IEA]
codon start: 1
product: Dus4p
translation: MMLAREFVRNQNARITDFSTNEADTPLIVQFGANNEVDLARAAKMIMPYTDGIGLNCGCPIKEQVREGIGAALMTDPERVASMVRAVKATCGPEFCVEVKIRIHSDLQETVRFARLVEDAGADYITVHGRRKTQRSSEPANWEAIKLIKESVKCPVVANGDAFTMDDVNKIVELTGVDGVMSARGILANPALFSGYNKTPWGAIELFWDYVTSYGLPFRLTQHHFSEMVELEFTRKQKRSLNESNNLPELLDWFDARFDLKRRGEPGFGERVEFPWKSTYHERELDNELNENASLNLASDLASVHLAS
SIO_010081: AWJ20_2222
subclass of: SO_0000673
so part of: AWJ20_2222
location: complement(724509..725435)
location: region:724509-725435:-1
so has part: feature:724509-725435:-1:exon

XP_018737094.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:724509-725435:-1:exon

AWJ20_2223
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2223
so part of: sequence
location: <726285..>727235
location: region:726285-727235:1
so has part: feature:726285-727235:1:exon
subclass of: SO_0000010

30034111
type: Gene
SIO_000068: ncbigene

position:726285:1
position: 726285
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:727235:1
position: 727235
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:726285-727235:1:exon

AWJ20_2223
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2223
product: hypothetical protein
transcript id: XM_018879153.1
SIO_010081: AWJ20_2223
subclass of: SO_0000673
so part of: AWJ20_2223
location: <726285..>727235
location: region:726285-727235:1
so has part: feature:726285-727235:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:726285-727235:1:exon

AWJ20_2223
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2223
codon start: 1
product: hypothetical protein
translation: MPSLNNGSIIGSIFGKGTVYESLDNSEDDNLYNLQLHIDDNQTTTPLGGGVGIDPRAQDPRHDSEYNTSGNGGLAIGSVTETGRSGRRDSARNQPLMNSDDSDESDDDDGPSDDILTERRNIYESAISSPPHVNHGTRLHPNYHHTDNVSDEVQEDGDNEIPQSLMVEPTAKTTVSSGATLGSTANHGTVVKGGHGGSDISAINSNTTLHQMSSPKQARRIFSANDLGDQPSARFGSPNHTHRRSPLAMASGHGPPSSVLPLYKTDLKGNNLSASSWSAAKSTHNLMIDPKERAKWKWANVENLDIFLQEVSTGSP
SIO_010081: AWJ20_2223
subclass of: SO_0000673
so part of: AWJ20_2223
location: 726285..727235
location: region:726285-727235:1
so has part: feature:726285-727235:1:exon

XP_018737095.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:726285-727235:1:exon

AWJ20_2224
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ATG9
locus tag: AWJ20_2224
so part of: sequence
location: <727652..>728827
location: region:727652-728827:1
so has part: feature:727652-728827:1:exon
subclass of: SO_0000010

30034112
type: Gene
SIO_000068: ncbigene

position:727652:1
position: 727652
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:728827:1
position: 728827
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:727652-728827:1:exon

AWJ20_2224
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ATG9
locus tag: AWJ20_2224
product: autophagy protein ATG9
transcript id: XM_018879154.1
SIO_010081: AWJ20_2224
subclass of: SO_0000673
so part of: AWJ20_2224
location: <727652..>728827
location: region:727652-728827:1
so has part: feature:727652-728827:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:727652-728827:1:exon

AWJ20_2224
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ATG9
locus tag: AWJ20_2224
inference: similar to AA sequence:KEGG_Orthology:K17907
codon start: 1
product: autophagy protein ATG9
translation: MQTISWKKVVEKIELLKNQNLGTSGKAATKGSAINSRQKLDKHSIANRIMRKENYLVAMINKDILDLRVPLPFLRKKQFFTRTLEWNLSLCIMDYAFNEQGELRPIFLRESQRRLLSDGLRRRFLFAGIMNILCAPFIIAYLTLLYFFRYFNEYHRDPSAIGTRQYTPLAEWKMRELNELSHLFQNRLNMSYPAASRYINQFPREKTVSVLRFVAFVCGSFAAVLGIISLVDPELFLGFEITKDRTVLFYIGIFGSIVAISRSMIPDETLVFDPVTSMMYVAEFTHYLPKEWEGRLHSDSVKAEFAAMYDLKIMIILNELASVIIAPFILWFSLPNSCDRIIDFFREFSVHVDGLGYVCSFAMFNFDRVQKKNGVSIGYTHGGFYRLRQGD
SIO_010081: AWJ20_2224
subclass of: SO_0000673
so part of: AWJ20_2224
location: 727652..728827
location: region:727652-728827:1
so has part: feature:727652-728827:1:exon

XP_018737096.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:727652-728827:1:exon

AWJ20_2225
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: NOP14
locus tag: AWJ20_2225
so part of: sequence
location: complement(<729549..>732047)
location: region:729549-732047:-1
so has part: feature:729549-732047:-1:exon
subclass of: SO_0000010

30034113
type: Gene
SIO_000068: ncbigene

position:729549:-1
position: 729549
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:732047:-1
position: 732047
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:729549-732047:-1:exon

AWJ20_2225
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: NOP14
locus tag: AWJ20_2225
product: Nop14p
transcript id: XM_018879155.1
SIO_010081: AWJ20_2225
subclass of: SO_0000673
so part of: AWJ20_2225
location: complement(<729549..>732047)
location: region:729549-732047:-1
so has part: feature:729549-732047:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:729549-732047:-1:exon

AWJ20_2225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: NOP14
locus tag: AWJ20_2225
inference: similar to AA sequence:KEGG_Orthology:K14766
note: Nucleolar protein; forms a complex with Noc4p that mediates maturation and nuclear export of 40S ribosomal subunits; also present in the small subunit processome complex, which is required for processing of pre-18S rRNA; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0030692 - Noc4p-Nop14p complex [Evidence IPI] [PMID 12446671]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10684247]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12150911]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0030515 - snoRNA binding [Evidence IPI] [PMID 12068309]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12068309]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 11694595]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMI…
codon start: 1
product: Nop14p
translation: MAGSQLKQLKASLKANGLLGQTNTGKKGKRPNSSHDRKDRDKAIQSIREAFNPFDVKVTKQKVDVIGRTIQGAQGKPGISKQVGEENRRRAYEVMAKKNKAGGIIDRRFGENDANMTPEEKMLARFTREKLTGLASRKESLFNLEDDDGEDDTLTHYGQSLSLTDDFEQDDLGVDEDDEETKEIIRKRRMMMVNGNEEEEGESSAPKSKKEVMQEIIAKSKMYKYERQQAKEEDLHIIDELDAQENLDELLEDLNAYDRKHTVPKAESAERDEEYEQRVREMAFDRRAQPTDRTKTEEELAKEKAEKTRKLEQDRLARMDGEIYNDDDDDIGHTSDSGSGEEDEGEGDEDVNDAAEFGLDVRNFSDDYVSDGDNIDGSDEGEFLDEDDEEAESELSQPSKRRKVSESKPQYTCPETIDDLESILNQQTSSSEYPKVIERILDLYHPSKAVGNKQKLGVFTTVLFEFLQKPNYTSNYPQVFTKMVEQLKTLTTSHVEVLTDFCREQILQVNEKLTATRLGDSTVAPADVLLFTLIGLVFSTSDHFHLVVTSATLVLAQHLSQSPLRSAKDLLTNIFICDTLLAYQRISQRYIPEIPLFLQRLLTLSTSSEGAKDVAETLDIFVEDSDFHFDLDIKALKGLDGTLKLLDFVEPRDNLLERIFLHSLDTISTASNLWRDKLAYIEIFGPITKLLEVHGDIHPLVASTRSKLEKLIAISTKERVPLTLQSHRPLPIQTFAPKFEENYNVDKKSYDPDRERNEGNKLRAELKKERKGALRDLRRDNAFIAREKIKTKRQTDKEYHEKLARLERTIQTEEGAEKNKYEREKQARKRKH
SIO_010081: AWJ20_2225
subclass of: SO_0000673
so part of: AWJ20_2225
location: complement(729549..732047)
location: region:729549-732047:-1
so has part: feature:729549-732047:-1:exon

XP_018737097.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:729549-732047:-1:exon

AWJ20_2226
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: mus7
locus tag: AWJ20_2226
so part of: sequence
location: complement(<734402..>738736)
location: region:734402-738736:-1
so has part: feature:734402-738736:-1:exon
subclass of: SO_0000010

30034114
type: Gene
SIO_000068: ncbigene

position:734402:-1
position: 734402
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:738736:-1
position: 738736
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:734402-738736:-1:exon

AWJ20_2226
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: mus7
locus tag: AWJ20_2226
product: DNA repair protein Mus7/Mms22
transcript id: XM_018879156.1
SIO_010081: AWJ20_2226
subclass of: SO_0000673
so part of: AWJ20_2226
location: complement(<734402..>738736)
location: region:734402-738736:-1
so has part: feature:734402-738736:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:734402-738736:-1:exon

AWJ20_2226
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: mus7
locus tag: AWJ20_2226
codon start: 1
product: DNA repair protein Mus7/Mms22
translation: MPLEDGYISDSEGSLYDEVITRSLTAYEPPDYELDHNSRIPLTNEVQSENQRLNADVQQQSDLLLEELSGNGFESGANIELARKPQSSRESATQNKIDLPPGSQEDREQPQLPIIPDSSITTTISAESSTSDGLSTEHPHTAQTSLEENEIVNAVAIVEARSGRSLRQRTVLQLHPYTLEYELYRRSLKSRGIRPVVVPSQGKSSGPDPQLPQNSSSQQETPSQSQLYPESMGDDMNSEDIAYEENNETFGTTFSSPPPSSPIPPVSLPSKTTKGRAAKLKALDPDEHLYANAFSQGSSAASSEDEAIDRILLAKQRRRRQLFKTIARPETESHSRPNSGTDSADSSKFNSSSDSGESDSESEPELASEIELLKKKVRGVLPPSFITIDYTLQHQNKNKTNKKKTNSSTENNHKGVARKKIGNSTQRPLSPAPFGFTSSRTASPPAYTRTTPKAPSLTPPVLASPIRTDSVDNNHRPILISSDDDFGLPGQFEPLDDLVDPSDMEDDHIDTMNGPSKGGSSRNPQTRPRKRLAQSTIDGNSKDTRYKHKRPRGSVRHTNHQTRITGKSTKRRPQGHHNSKVTAEARQSQNSTTQQMSIVDLIDNSTSTERNNMPRFSLIAQRSALLKAHEQRLDSPTHKYIVINDGDESHPELKTLKRWKRGRLRQTNKLGSYSNVRQHHQSVRSDNNYRTAPTSVRERKEQSKPRRKLPTQLLTKKNPSLSVVSRGNSYYQSKSPQFRTTIIEIESGEYSVAKPMNSVRPKQYPALSPLQSISPGMRPMYPLRHENLPRTHSNSSLSFASSRPEVENNRVTREYKSKKQILRPPQRRTEYDDTQLVGDMDHLQPITSLVGAPHLSSMDAVPNRPFQGRRFYSYQFDVQPFAHDVVFATDTIVYNCVVQRPLGSKRDAIFLGNGIGLVEAKVEDHGLRIPKISEAYNRFHIWIEDCLSPEVASKDYSLDVYEFFLFVLPLVSDGNSPSYDQDFVKELSRLTLGLVADILDVWSRPFANTKMSTASSEFAQLTFTTASLCLLLLHRLKDLLKTDPTTMYSHSNAIRNLGGKLVQLIVSNFLPEVSNIMRSHRSTSNRVITRTSYILEIIYIAIHVLDNEVKGDGFYDMLNSVITLPQLLRNPEDLDSVERVWHSVFIFSAVYKLPKLTLQSNWKLVNILQGLTLTTFDSPGQQTLAIPYQRVFLVRCLKLATDWKWENNPALCISIYKFFAGRRFSNIEPSVPSGLSPFLSNGNFTEVVTTDSAYNIFLKLVAWTICFFQGDDNRLRKFIGILTPLNGRLYPMSSGLKVTDLDALGNQYSLLLVQFKYGRPSTRPTIDHFRSFIVLEQSHILARNLSLEAWFVVTKLLLEQDMDLDDTMKWFAEIVDSALKDTRKTGRYTSNLERELDYQNVVTYQKFFEKAVVSIDKLVSNQAVISKSRQWMNLLTPCKYRQIP
SIO_010081: AWJ20_2226
subclass of: SO_0000673
so part of: AWJ20_2226
location: complement(734402..738736)
location: region:734402-738736:-1
so has part: feature:734402-738736:-1:exon

XP_018737098.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:734402-738736:-1:exon

AWJ20_2227
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CLD1
locus tag: AWJ20_2227
so part of: sequence
location: <741159..>742592
location: region:741159-742592:1
so has part: feature:741159-742592:1:exon
subclass of: SO_0000010

30034115
type: Gene
SIO_000068: ncbigene

position:741159:1
position: 741159
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:742592:1
position: 742592
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:741159-742592:1:exon

AWJ20_2227
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CLD1
locus tag: AWJ20_2227
product: Cld1p
transcript id: XM_018879157.1
SIO_010081: AWJ20_2227
subclass of: SO_0000673
so part of: AWJ20_2227
location: <741159..>742592
location: region:741159-742592:1
so has part: feature:741159-742592:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:741159-742592:1:exon

AWJ20_2227
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CLD1
locus tag: AWJ20_2227
inference: similar to AA sequence:KEGG_Orthology:K13535
note: Mitochondrial cardiolipin-specific phospholipase; functions upstream of Taz1p to generate monolyso-cardiolipin; transcription increases upon genotoxic stress; involved in restricting Ty1 transposition; has homology to mammalian CGI-58; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 23637464]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19244244]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004623 - phospholipase A2 activity [Evidence IDA,IMP] [PMID 19244244]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0035965 - cardiolipin acyl-chain remodeling [Evidence IMP] [PMID 19244244]; GO_process: GO:0035965 - cardiolipin acyl-chain remodeling [Evidence IMP] [PMID 23637464]; GO_process: GO:0032048 - cardiolipin metabolic process [Evidence IDA,IGI] [PMID 19244244]
codon start: 1
product: Cld1p
translation: MAEVQQAPASAAINEPSSATQTKSGGRSVTTGAVKKERHVLTYRESFSQWLKAPSHEEAERNVLSLLDFFPESDGKRVAKVNKVDIGNKLHINEFEIVNVEKPDDVTEAGSEYSKNLVVLHGYGAGLALFYRNFAEWSSIKGSRTMALDLLGFGRSSRPKFSIATKDVSARDENGRFKVVVETENWFIDALEKWRIAKNLDKFTLMGHSMGGYLAAAYAFKYPSRVERLIMVSPAGVERGYTPELDNVRLFGGNSTDSLPKQSAKNKPSSSRQSSDAPHIDEEVSVSQSDITHHHHNELHPSDSHSSLVNEASTSNRKLPNWFMYLWNRNISPFVLLRSAAIFAPRMTSNWTSRRFSDVSEKERDIMHMYAYKTFTAPGSGEYGLTRLLAAGAVAREPLVDRVVKGLKCPSVWIYGENDWMNVHAGEEAVLRLNKLGTSSAANAKSHVIDYAGHHVYLDNPSDFDRVVVDFLKTTNH
SIO_010081: AWJ20_2227
subclass of: SO_0000673
so part of: AWJ20_2227
location: 741159..742592
location: region:741159-742592:1
so has part: feature:741159-742592:1:exon

XP_018737099.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:741159-742592:1:exon

AWJ20_2228
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2228
so part of: sequence
location: <742913..>743299
location: region:742913-743299:1
so has part: feature:742913-743299:1:exon
subclass of: SO_0000010

30034116
type: Gene
SIO_000068: ncbigene

position:742913:1
position: 742913
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:743299:1
position: 743299
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:742913-743299:1:exon

AWJ20_2228
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2228
product: oxidoreductase
transcript id: XM_018879158.1
SIO_010081: AWJ20_2228
subclass of: SO_0000673
so part of: AWJ20_2228
location: <742913..>743299
location: region:742913-743299:1
so has part: feature:742913-743299:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:742913-743299:1:exon

AWJ20_2228
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2228
inference: similar to AA sequence:KEGG_Orthology:K16066
note: NADP(+)-dependent serine dehydrogenase and carbonyl reductase; acts on serine, L-allo-threonine, and other 3-hydroxy acids; green fluorescent protein fusion protein localizes to the cytoplasm and nucleus; may interact with ribosomes, based on co-purification experiments; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0004090 - carbonyl reductase (NADPH) activity [Evidence IDA] [PMID 18630881]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IDA] [PMID 17962934]; GO_function: GO:0031132 - serine 3-dehydrogenase activity [Evidence IDA] [PMID 12535615]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IC] [PMID 12535615]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]
codon start: 1
product: oxidoreductase
translation: MKFSVSSFVFKSLTSTLARNSIRKMSSYGSSAGSRIAGKTVLITGASAGIGEATAYELAEASGGDIRLILSARRVENLSKISKDLEAKYPKVKVLPLALDVSKYKEIPQWVKDIPQEWSNVDVLINNA
SIO_010081: AWJ20_2228
subclass of: SO_0000673
so part of: AWJ20_2228
location: 742913..743299
location: region:742913-743299:1
so has part: feature:742913-743299:1:exon

XP_018737100.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:742913-743299:1:exon

AWJ20_2229
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2229
so part of: sequence
location: <743406..>743729
location: region:743406-743729:1
so has part: feature:743406-743729:1:exon
subclass of: SO_0000010

30034117
type: Gene
SIO_000068: ncbigene

position:743406:1
position: 743406
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:743729:1
position: 743729
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:743406-743729:1:exon

AWJ20_2229
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2229
product: oxidoreductase
transcript id: XM_018879159.1
SIO_010081: AWJ20_2229
subclass of: SO_0000673
so part of: AWJ20_2229
location: <743406..>743729
location: region:743406-743729:1
so has part: feature:743406-743729:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:743406-743729:1:exon

AWJ20_2229
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2229
inference: similar to AA sequence:KEGG_Orthology:K16066
note: NADP(+)-dependent serine dehydrogenase and carbonyl reductase; acts on serine, L-allo-threonine, and other 3-hydroxy acids; green fluorescent protein fusion protein localizes to the cytoplasm and nucleus; may interact with ribosomes, based on co-purification experiments; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0004090 - carbonyl reductase (NADPH) activity [Evidence IDA] [PMID 18630881]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IDA] [PMID 17962934]; GO_function: GO:0031132 - serine 3-dehydrogenase activity [Evidence IDA] [PMID 12535615]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IC] [PMID 12535615]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]
codon start: 1
product: oxidoreductase
translation: MVHGNDKVGDIAPEDIDIMYHTNVLGLITLTQQFIPKFRAQGHGDVINIGSIAGRDPYPGGAIYCSTKAALRSFTETLRKETIDTRIRVIEIQPGAVETEFSSKLRN
SIO_010081: AWJ20_2229
subclass of: SO_0000673
so part of: AWJ20_2229
location: 743406..743729
location: region:743406-743729:1
so has part: feature:743406-743729:1:exon

XP_018737101.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:743406-743729:1:exon

AWJ20_2230
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2230
so part of: sequence
location: complement(<744276..>745268)
location: region:744276-745268:-1
so has part: feature:744276-745268:-1:exon
subclass of: SO_0000010

30034119
type: Gene
SIO_000068: ncbigene

position:744276:-1
position: 744276
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:745268:-1
position: 745268
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:744276-745268:-1:exon

AWJ20_2230
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2230
product: hypothetical protein
transcript id: XM_018879161.1
SIO_010081: AWJ20_2230
subclass of: SO_0000673
so part of: AWJ20_2230
location: complement(<744276..>745268)
location: region:744276-745268:-1
so has part: feature:744276-745268:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:744276-745268:-1:exon

AWJ20_2230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2230
inference: similar to AA sequence:KEGG_Orthology:K00450
codon start: 1
product: hypothetical protein
translation: MTPTSTSTERSQQQSKLIDSLPPHNVEPLWTVMSAMVPPVPQPKAIPNVWNYKELRPLLLESGRVVNEHEAERRVLMLINPALTAPQTTDTLYAGLQLINPGETAPAHRHQAFALRFIIEGSGGFTAVEGKKLYMERGDVILTPRWEWHDHGKEGEGPMIWLDGLDLPMFQSIPVNFAEGYAEKRYPSTPEVGDSPIKYPWAEVQKTLDSSSSSHAIYNYVSKVKGKQGKHLSTIIGAQAERISPSSSSPLRQESSSFIVHVYSGKGYTVVNHNEQEQKLIWNQHDTFCIPSWVKFQHFNHSDDEQAYLFSYSDTPLLENLALHRVAKFD
SIO_010081: AWJ20_2230
subclass of: SO_0000673
so part of: AWJ20_2230
location: complement(744276..745268)
location: region:744276-745268:-1
so has part: feature:744276-745268:-1:exon

XP_018737102.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:744276-745268:-1:exon

AWJ20_2231
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: FMP41
locus tag: AWJ20_2231
so part of: sequence
location: <745659..>746543
location: region:745659-746543:1
so has part: feature:745659-746543:1:exon
subclass of: SO_0000010

30034120
type: Gene
SIO_000068: ncbigene

position:745659:1
position: 745659
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:746543:1
position: 746543
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:745659-746543:1:exon

AWJ20_2231
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: FMP41
locus tag: AWJ20_2231
product: Fmp41p
transcript id: XM_018879162.1
SIO_010081: AWJ20_2231
subclass of: SO_0000673
so part of: AWJ20_2231
location: <745659..>746543
location: region:745659-746543:1
so has part: feature:745659-746543:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:745659-746543:1:exon

AWJ20_2231
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: FMP41
locus tag: AWJ20_2231
note: hypothetical protein; GFP-fusion protein is induced in response to the DNA-damaging agent MMS; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]
codon start: 1
product: Fmp41p
translation: MVAWKRLIRFVATDGKVYRGEPIISENQDLGKLAEDGTKLSAKLIKGDDIFSEDTVVTNEVLEVSKLLGPLAPTDVPIVKCVGLNYMKHIQEGGRTPPPYPSIFYKPNFAVADHGEDIPIPKISQENQLDYEGELCVVIGKTGKDIKEEDALSYVAGYTAGNDVSARTWQRDPKYAGGVPQWGFSKSFDKYAPLGPVLVSTSEIQNPGTLELKTLVNGEVRQHTNTDDLLFNVAKIIAFISQGTTLEKGTVIMTGTPSGVAMGMKPTPKYLHANDVVEVYISSIGTLKNKMHFI
SIO_010081: AWJ20_2231
subclass of: SO_0000673
so part of: AWJ20_2231
location: 745659..746543
location: region:745659-746543:1
so has part: feature:745659-746543:1:exon

XP_018737103.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:745659-746543:1:exon

AWJ20_2232
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2232
so part of: sequence
location: complement(<746887..>747297)
location: region:746887-747297:-1
so has part: feature:746887-747297:-1:exon
subclass of: SO_0000010

30034121
type: Gene
SIO_000068: ncbigene

position:746887:-1
position: 746887
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:747297:-1
position: 747297
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:746887-747297:-1:exon

AWJ20_2232
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2232
product: hypothetical protein
transcript id: XM_018879163.1
SIO_010081: AWJ20_2232
subclass of: SO_0000673
so part of: AWJ20_2232
location: complement(<746887..>747297)
location: region:746887-747297:-1
so has part: feature:746887-747297:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:746887-747297:-1:exon

AWJ20_2232
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2232
codon start: 1
product: hypothetical protein
translation: MSAEGSCLCGAVGFTAPTTPIATLACYCSDCRKGSGHLGQILAKYNESDVKIHDDKKVLKEYIVTATQSGFIKKKLFCGECGCTLLTIPTKHEGLYMVRSTLMDDPEIWRNNFVPAKALFDDSRKAYLANVDTQIV
SIO_010081: AWJ20_2232
subclass of: SO_0000673
so part of: AWJ20_2232
location: complement(746887..747297)
location: region:746887-747297:-1
so has part: feature:746887-747297:-1:exon

XP_018737104.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:746887-747297:-1:exon

AWJ20_2233
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ASG1
locus tag: AWJ20_2233
so part of: sequence
location: <748030..>750690
location: region:748030-750690:1
so has part: feature:748030-750690:1:exon
subclass of: SO_0000010

30034122
type: Gene
SIO_000068: ncbigene

position:748030:1
position: 748030
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:750690:1
position: 750690
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:748030-750690:1:exon

AWJ20_2233
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ASG1
locus tag: AWJ20_2233
product: Asg1p
transcript id: XM_018879164.1
SIO_010081: AWJ20_2233
subclass of: SO_0000673
so part of: AWJ20_2233
location: <748030..>750690
location: region:748030-750690:1
so has part: feature:748030-750690:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:748030-750690:1:exon

AWJ20_2233
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ASG1
locus tag: AWJ20_2233
note: Zinc cluster protein proposed to be a transcriptional regulator; regulator involved in the stress response; null mutants have a respiratory deficiency, calcofluor white sensitivity and slightly increased cycloheximide resistance; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]
codon start: 1
product: Asg1p
translation: MDGIKKSHQQVDGQGLESHSIVGERVDRSPIQEYDDSMYNDSSSTKRRRVNLACVQCRDRKVRCDGAQPSCGRCNSRGTNCTYAKKFARARVSAEYVRELEEKLGLVGGSDSRDWSQAPTSPGPRTVSTISLEEATSGVGSAIPSQSEQQGPGVHSINEGMFGENQSNSSQLLHHNSSFAVIPRTSQDSNMHSLGSNQLNANSISPSTTYSINSIDISPNGTADSNQPGTLSNSLKTSTDAGTSLSASISSRPKTVSSSSAFGDPEDPTTAADAMGATAKKTNARRQDFYGSSSAMSFMKLVEAAVNAGKGNSNMRANESEGSKNFAPHKYKMAYSCAPSYLTGGSAKEEDWVVPPRRLADHYVQSYFTYVYSLYPFIHQTSFMTAYNSVWVSDSEQTDTNNGNGNGTGTSRSDAFAKGSYGNNRINDGFDDSSDDELNDGHMFYCIMNMVFAFGCLFSSGVESISRESSSQVYFDRAREHLNFDVLATGDSGSLILLQALLLIGQYLQATQRPAACWNVVGLAIRVAQELGLHQEHHIASRPSVIEQELCRRLWYGCTLMDRIVSMTFGRPLMVTQDFKVNPPAFLDDSYITDSGTITPPKSSPPSILGFYQQTILLYDILADILQNVYDTHDSTAVDDDEQRLLVLTNILKTDCRLNKFKKNIPPHLQVEKILQHPPSNPFARQTNVLQARILHLEIMLYRPIVLSNSTLKGKQSPLNNDSSLQLSLENTICRLCVMSAINLIKLIFDNKDSPNVPAIWYNIFYIYTSASVLMAAKLRPSLKSELDSESMEAAWKMALHLLRIFEQTGPSATRCLRILEVLHDKISSASHHQSKPMFDFLPNLVDSEIDFGPDSDLLYSMMNDAYGPFSSNTIDFHYLDNLPGL
SIO_010081: AWJ20_2233
subclass of: SO_0000673
so part of: AWJ20_2233
location: 748030..750690
location: region:748030-750690:1
so has part: feature:748030-750690:1:exon

XP_018737105.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:748030-750690:1:exon

AWJ20_2234
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: HOL1
locus tag: AWJ20_2234
so part of: sequence
location: complement(<750899..>752398)
location: region:750899-752398:-1
so has part: feature:750899-752398:-1:exon
subclass of: SO_0000010

30034123
type: Gene
SIO_000068: ncbigene

position:750899:-1
position: 750899
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:752398:-1
position: 752398
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:750899-752398:-1:exon

AWJ20_2234
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: HOL1
locus tag: AWJ20_2234
product: Hol1p
transcript id: XM_018879165.1
SIO_010081: AWJ20_2234
subclass of: SO_0000673
so part of: AWJ20_2234
location: complement(<750899..>752398)
location: region:750899-752398:-1
so has part: feature:750899-752398:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:750899-752398:-1:exon

AWJ20_2234
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: HOL1
locus tag: AWJ20_2234
note: Putative transporter in the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; mutations in membrane-spanning domains permit cation and histidinol uptake; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 8955402]; GO_function: GO:0015665 - alcohol transmembrane transporter activity [Evidence IMP] [PMID 2405251]; GO_function: GO:0022890 - inorganic cation transmembrane transporter activity [Evidence IMP] [PMID 8955402]; GO_process: GO:0006812 - cation transport [Evidence IMP] [PMID 8955402]; GO_process: GO:0015850 - organic hydroxy compound transport [Evidence IMP] [PMID 2405251]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Hol1p
translation: MSDLEIKHPNGSPFTDQEKNIGSQHEEQYPPPSELNTEYILQRHGTLELDPMPSHDPLDPLNWPALKKHLHLALIAYSCMLVTFGAAGIVPAYPGMAEEYGVSIPTCSYFTSAQILISGIVPIFTTPIMNKYGRKKIQVISCLCCCAANIGGGFAKTYGQQMATRVLVGLFVSPSLGLGAVLVTEMFFSHQRGSKNGWWSLMITLGTPGGPFIMGFVVKYAAIKWVYFILAIMNFVAFLGWMIASETLWERDGIVVNEPDSLFKFKSKSNVTINLWSFIAPLAEAREIRVFIPSLAYAVVFCYANIVLIVETPQVFGPKFGLDAVGLGLQMIAVLVGSIIGEVMSGPLSDWWMTRCVRKRGVKVIEDRLTLSYIGFILAMVGIIVWGVRLEQATPMKWNITPLVGAAIAACGNQIVTTILITYSIDVDYKRSIEIGNFINFFRQTYGFIGPFYFPDMFDNLGFSGAGGLMAGLMGVVSLASVLALQLYFTKRAKKTLGI
SIO_010081: AWJ20_2234
subclass of: SO_0000673
so part of: AWJ20_2234
location: complement(750899..752398)
location: region:750899-752398:-1
so has part: feature:750899-752398:-1:exon

XP_018737106.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:750899-752398:-1:exon

AWJ20_2235
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2235
so part of: sequence
location: <753434..>754681
location: region:753434-754681:1
so has part: feature:753434-754681:1:exon
subclass of: SO_0000010

30034124
type: Gene
SIO_000068: ncbigene

position:753434:1
position: 753434
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:754681:1
position: 754681
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:753434-754681:1:exon

AWJ20_2235
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2235
product: hypothetical protein
transcript id: XM_018879166.1
SIO_010081: AWJ20_2235
subclass of: SO_0000673
so part of: AWJ20_2235
location: <753434..>754681
location: region:753434-754681:1
so has part: feature:753434-754681:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:753434-754681:1:exon

AWJ20_2235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2235
inference: similar to AA sequence:KEGG_Orthology:K00480
codon start: 1
product: hypothetical protein
translation: MVSVKNKFKIIVCGGGLGGLGCAIGLALNGHHVIVLEAASEINEVGAGIQIPPNCVKVLNEYGVAEKLKKYVTKPANINLRRYSTGEILNATKLDPHMTETYGFPYWLIHRADYQRVLWDYALSIGVAIKTCSRIDSVDDATHTVKLVDGTTYTGDLIVGADGIRSKVRDSAVVDEEVVLPTPSSNCAYRATVPAEEMLADPVIAHLMTDINSNCWIGYRRHVMAYPIRNGKMYNIVMSHPGQAAVGKWAEPGDIEEMKNHYKNFDPVVVQLLTHVKTVLKWVLADLPTLPRWVSKSGQTVLIGDAAHAMLPYLAQGAAQAIEDGACISSLLSQCETEKDIPDAMRKYEKRRKLRCEKIQRGARDNGYIWHMPDGEEQEQRDSDMKLQPADKKNPNQWSDPLFQKWMFGWDAFRD
SIO_010081: AWJ20_2235
subclass of: SO_0000673
so part of: AWJ20_2235
location: 753434..754681
location: region:753434-754681:1
so has part: feature:753434-754681:1:exon

XP_018737107.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:753434-754681:1:exon

AWJ20_2236
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CYB2
locus tag: AWJ20_2236
so part of: sequence
location: complement(<754829..>756262)
location: region:754829-756262:-1
so has part: feature:754829-756262:-1:exon
subclass of: SO_0000010

30034125
type: Gene
SIO_000068: ncbigene

position:754829:-1
position: 754829
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:756262:-1
position: 756262
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:754829-756262:-1:exon

AWJ20_2236
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CYB2
locus tag: AWJ20_2236
product: Cyb2p
transcript id: XM_018879167.1
SIO_010081: AWJ20_2236
subclass of: SO_0000673
so part of: AWJ20_2236
location: complement(<754829..>756262)
location: region:754829-756262:-1
so has part: feature:754829-756262:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:754829-756262:-1:exon

AWJ20_2236
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CYB2
locus tag: AWJ20_2236
inference: similar to AA sequence:KEGG_Orthology:K00101
note: Cytochrome b2 (L-lactate cytochrome-c oxidoreductase); component of the mitochondrial intermembrane space, required for lactate utilization; expression is repressed by glucose and anaerobic conditions; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 3004948]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 6290489]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0070469 - respiratory chain [Evidence IEA]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0004460 - L-lactate dehydrogenase (cytochrome) activity [Evidence IEA]; GO_function: GO:0004460 - L-lactate dehydrogenase (cytochrome) activity [Evidence IDA] [PMID 3004948]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006089 - lactate metabolic process [Evidence IMP] [PMID 8492799]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]
codon start: 1
product: Cyb2p
translation: MVKVLAEEIKKHTTKESCWVVLHGKVYDVTDFLSRHPGGQKAILRVAGKDATEEFDIIHPEGTLKSLSSSAYIGEVEDIENLKDTPETSNESKLGTVALPALDAMLNLDDFEKTAQKVISAKGWAYYYSASDDLVTKVYNNEVYRKVLLRPRIFKDVETVSTVSKIQGLVTTLPLFVSPAAMARLAHPSGEKGIAHACGSEGIVQMISNNASMKFEDIVSDPIVSTQKFFYQLYVQNDRKISENVLSKVIATGRCHAIVLTLDAPTPGKREADERVANDGKTFSENSGGIAKTETSEGLGRALFAGTSARLLWDDLHWLRKQIPADMPIILKGLQTYEDALIAATQWAPKGLVHGILLSNHGGRAMDQSQPPLMILQEIRKYAPEVFSSIEVYVDGGIRRGTDVVKALCLGAKQVGIGRAALYGLAGYGEQGVQRTIQILREEIETCMRLLGVNSVEELGPQHVNTRQLDNLVYSRL
SIO_010081: AWJ20_2236
subclass of: SO_0000673
so part of: AWJ20_2236
location: complement(754829..756262)
location: region:754829-756262:-1
so has part: feature:754829-756262:-1:exon

XP_018737108.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:754829-756262:-1:exon

AWJ20_2237
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2237
so part of: sequence
location: <761325..>762437
location: region:761325-762437:1
so has part: feature:761325-762437:1:exon
subclass of: SO_0000010

30034126
type: Gene
SIO_000068: ncbigene

position:761325:1
position: 761325
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:762437:1
position: 762437
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:761325-762437:1:exon

AWJ20_2237
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2237
product: protein MET30
transcript id: XM_018879168.1
SIO_010081: AWJ20_2237
subclass of: SO_0000673
so part of: AWJ20_2237
location: <761325..>762437
location: region:761325-762437:1
so has part: feature:761325-762437:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:761325-762437:1:exon

AWJ20_2237
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2237
codon start: 1
product: protein MET30
translation: MLFSGLKQGVALSKITTGAMVLNVMIWEGSKQASSFGSNSGSSAASSLTSSVGSGYTSTSGSRTVSSSGSVSSGSDLSTLSPDSSAATGSKAIESGNLELPPLSTGNSTAIVSCADKSIRFYSLTSGKLIRTIKGLHGSSAVRFIRRLSNTHLITAGLDGRLIVSNFTTGEVSAIFRAHSSYITSLDVWGGYVVSTGFDKIVNVFKIIDESGALKNMASVKLDVCPTGAKIVALDPSNNDIIEKESMDDTLRESSPSSPGHTFKEGFIPAVILCKQDTTYMFFYSLHSLRLLNKVNLCDADYGSDSFTPLDIAVDEQRLRYAVATNHVPYMRIITGFVGKTTIVNNLAVFSPQDQYSAPQLVWSKSGKVS
SIO_010081: AWJ20_2237
subclass of: SO_0000673
so part of: AWJ20_2237
location: 761325..762437
location: region:761325-762437:1
so has part: feature:761325-762437:1:exon

XP_018737109.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:761325-762437:1:exon

AWJ20_2238
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ANT1
locus tag: AWJ20_2238
so part of: sequence
location: complement(<762866..>763429)
location: region:762866-763429:-1
so has part: feature:762866-763429:-1:exon
subclass of: SO_0000010

30034127
type: Gene
SIO_000068: ncbigene

position:762866:-1
position: 762866
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:763429:-1
position: 763429
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:762866-763429:-1:exon

AWJ20_2238
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ANT1
locus tag: AWJ20_2238
product: Ant1p
transcript id: XM_018879169.1
SIO_010081: AWJ20_2238
subclass of: SO_0000673
so part of: AWJ20_2238
location: complement(<762866..>763429)
location: region:762866-763429:-1
so has part: feature:762866-763429:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:762866-763429:-1:exon

AWJ20_2238
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ANT1
locus tag: AWJ20_2238
note: Peroxisomal adenine nucleotide transporter; involved in beta-oxidation of medium-chain fatty acid; required for peroxisome proliferation; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005779 - integral component of peroxisomal membrane [Evidence IDA] [PMID 11566870]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0000295 - adenine nucleotide transmembrane transporter activity [Evidence IMP] [PMID 11390660]; GO_function: GO:0000295 - adenine nucleotide transmembrane transporter activity [Evidence IDA] [PMID 11566870]; GO_process: GO:0015867 - ATP transport [Evidence IDA] [PMID 11566870]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IGI,IMP] [PMID 11390660]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IGI,IMP] [PMID 11566870]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0007031 - peroxisome organization [Evidence IMP] [PMID 11390660]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Ant1p
translation: MLGALAGALAQIFTIPISVVTTKQQTSDVQQSLVATAKDVIGEDGVSGLWRGLKASLVLVVNPSITYGSFERLKQVLFANKPTLSAGDNFLLGALSKAMATIATQPMIVAKVMQQSSDKRRRQYKSFVDALVYLSKNEGLKGLFKGLGPQISKGVLVQGLLFMIKDQVELFLILFFRLIKQRLALAT
SIO_010081: AWJ20_2238
subclass of: SO_0000673
so part of: AWJ20_2238
location: complement(762866..763429)
location: region:762866-763429:-1
so has part: feature:762866-763429:-1:exon

XP_018737110.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:762866-763429:-1:exon

AWJ20_2239
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2239
so part of: sequence
location: complement(<763913..>764125)
location: region:763913-764125:-1
so has part: feature:763913-764125:-1:exon
subclass of: SO_0000010

30034128
type: Gene
SIO_000068: ncbigene

position:763913:-1
position: 763913
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:764125:-1
position: 764125
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:763913-764125:-1:exon

AWJ20_2239
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2239
product: hypothetical protein
transcript id: XM_018879170.1
SIO_010081: AWJ20_2239
subclass of: SO_0000673
so part of: AWJ20_2239
location: complement(<763913..>764125)
location: region:763913-764125:-1
so has part: feature:763913-764125:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:763913-764125:-1:exon

AWJ20_2239
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2239
codon start: 1
product: hypothetical protein
translation: MAVISKQLITSATAATTVAAAPLSPWGKAVAGALAAMAANALVYPLDIVKTRLQVQTEDDDLETGEKRVK
SIO_010081: AWJ20_2239
subclass of: SO_0000673
so part of: AWJ20_2239
location: complement(763913..764125)
location: region:763913-764125:-1
so has part: feature:763913-764125:-1:exon

XP_018737111.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:763913-764125:-1:exon

AWJ20_2240
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ICL1
locus tag: AWJ20_2240
so part of: sequence
location: <765230..>766144
location: region:765230-766144:1
so has part: feature:765230-766144:1:exon
subclass of: SO_0000010

30034130
type: Gene
SIO_000068: ncbigene

position:765230:1
position: 765230
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:766144:1
position: 766144
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:765230-766144:1:exon

AWJ20_2240
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ICL1
locus tag: AWJ20_2240
product: isocitrate lyase 1
transcript id: XM_018879172.1
SIO_010081: AWJ20_2240
subclass of: SO_0000673
so part of: AWJ20_2240
location: <765230..>766144
location: region:765230-766144:1
so has part: feature:765230-766144:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:765230-766144:1:exon

AWJ20_2240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ICL1
locus tag: AWJ20_2240
inference: similar to AA sequence:KEGG_Orthology:K01637
note: Isocitrate lyase; catalyzes the formation of succinate and glyoxylate from isocitrate, a key reaction of the glyoxylate cycle; expression of ICL1 is induced by growth on ethanol and repressed by growth on glucose; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004451 - isocitrate lyase activity [Evidence IEA,IEA]; GO_function: GO:0004451 - isocitrate lyase activity [Evidence IMP,ISS] [PMID 1551398]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_process: GO:0019752 - carboxylic acid metabolic process [Evidence IEA]; GO_process: GO:0006097 - glyoxylate cycle [Evidence IEA,IEA]; GO_process: GO:0006097 - glyoxylate cycle [Evidence TAS] [PMID 11092862]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
codon start: 1
product: isocitrate lyase 1
translation: MSSPAAKFRQLLSEPGVIIAPGVYDGLSARAATSSKAFKALYMTGAGTVASRLGAPDVGLASLPDMAANASLIANIDRSVPLIADADTGYGNSAMCARTLSLYSQAGVAALHVEDQVHSKRCGHLLGKQLVSAEEFVSRIKAMAIERKRIQSDIVIIARTDSLQSLGVDEAIERSKQAVAVGADVIFVEGVENSEQAKKIVSALNPTPVLVNIVPNGVTPNWSEEEIQELGFKIAIFPGVTLGPAFAAMSASLEALAKTRKDPTGAAAVAQKSSPKEFFLRLGLGEIIALDKAVGGTAFEGSNI
SIO_010081: AWJ20_2240
subclass of: SO_0000673
so part of: AWJ20_2240
location: 765230..766144
location: region:765230-766144:1
so has part: feature:765230-766144:1:exon

XP_018737112.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:765230-766144:1:exon

AWJ20_2241
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2241
so part of: sequence
location: <766804..>768255
location: region:766804-768255:1
so has part: feature:766804-768255:1:exon
subclass of: SO_0000010

30034131
type: Gene
SIO_000068: ncbigene

position:766804:1
position: 766804
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:768255:1
position: 768255
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:766804-768255:1:exon

AWJ20_2241
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2241
product: hypothetical protein
transcript id: XM_018879173.1
SIO_010081: AWJ20_2241
subclass of: SO_0000673
so part of: AWJ20_2241
location: <766804..>768255
location: region:766804-768255:1
so has part: feature:766804-768255:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:766804-768255:1:exon

AWJ20_2241
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2241
inference: similar to AA sequence:KEGG_Orthology:K17724
codon start: 1
product: hypothetical protein
translation: MITEPETASDAPSPTVELCKWVESLTWDDVPEEIRTRAKYLILDGITCAIVASHLPWSETAVKAVSSIEGEGPCHVIGWKDLKVGPLQSALLNSTFIQGFELDDYHSFAPLHSNSIMVPAILALVSYGKHKGISYSGKDFLLAHVVGFEVGPRVGLALHGGEILNRGWHSGPVFGHAASAAASSKFLGLNSEQIEDAFGIACTQTCGLMSAQFESSVKRMQHGFASRNGLFAALMAEQSYKGIKRVFEREYGGFLNVFSLGAEPPVVEELTKDLSEKWITPEINIKPYACMAGIHSTIDALYELFDKKPLQNAMDVVKQVTIEISEPLFKHGGWKATKPLTVIGAQMNNAYICAVILLDGVLTVKNFSEKLMNRPEIWELMEKIDVVHNKEFDTLPRTDRMIAAVKIEFTDGTIKTNTVVRPSGVKAPLSGDEIVDKFRTHTKGLISDEAQANILKTVLEIESSKDVSELVDALNIDILDPLK
SIO_010081: AWJ20_2241
subclass of: SO_0000673
so part of: AWJ20_2241
location: 766804..768255
location: region:766804-768255:1
so has part: feature:766804-768255:1:exon

XP_018737113.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:766804-768255:1:exon

AWJ20_2242
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2242
so part of: sequence
location: <768910..>770523
location: region:768910-770523:1
so has part: feature:768910-770523:1:exon
subclass of: SO_0000010

30034132
type: Gene
SIO_000068: ncbigene

position:768910:1
position: 768910
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:770523:1
position: 770523
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:768910-770523:1:exon

AWJ20_2242
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2242
product: carboxylesterase-lipase family protein
transcript id: XM_018879174.1
SIO_010081: AWJ20_2242
subclass of: SO_0000673
so part of: AWJ20_2242
location: <768910..>770523
location: region:768910-770523:1
so has part: feature:768910-770523:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:768910-770523:1:exon

AWJ20_2242
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2242
codon start: 1
product: carboxylesterase-lipase family protein
translation: MTSAPTIKRWEKHQLKFAGQGTLDGIKILEDDESGDVKCYRYTGVRYAQAPVGPLRWRRPQKLSKTYDYTGDYTSFKTVCPQPSLSTISANDDIVYDEDCLFANIWVPGGTPPKEGWPVLYFIHGGFLQVGSPHHYRQADPQDLLAKDSKAKYIIVAAGYRLNLFGFLSSKELLEEDKYNSNFGFWDQRMGMEWVYEHIHHFGGNKDNITVGGLSAGSYSAIFQLAYELYHPEVTQIIKRSLLLSNGLAIQPNTVDKTQDQFDSLLKELDIPKSLSAKEKLEKLRKVPFESLVKAIDGLDRQTFRAITDTYFVSPTLFDDIYSGKFGELVNTSGRSLMSGEVDNEWLIYSLTNAPDTVDELAAKIENYYPRPVTNALIKHYPTPKPDDDDDLQKVFGDIVSDMQVYVSSRLLVNSLAKAGMTTDRVFRYRIAFRGQYLDKYAPPEFRVPHTGDIGIWFYTAFDGITDDEKPLFQQWLEPVAEWITTGTTAKWGTRSITDLRVFNRDGTITITPDDRWDWAMTVGRVVSSALSPGSKL
SIO_010081: AWJ20_2242
subclass of: SO_0000673
so part of: AWJ20_2242
location: 768910..770523
location: region:768910-770523:1
so has part: feature:768910-770523:1:exon

XP_018737114.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:768910-770523:1:exon

AWJ20_2243
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CLB3
locus tag: AWJ20_2243
so part of: sequence
location: complement(<770734..>771948)
location: region:770734-771948:-1
so has part: feature:770734-771948:-1:exon
subclass of: SO_0000010

30034133
type: Gene
SIO_000068: ncbigene

position:770734:-1
position: 770734
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:771948:-1
position: 771948
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:770734-771948:-1:exon

AWJ20_2243
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CLB3
locus tag: AWJ20_2243
product: B-type cyclin CLB3
transcript id: XM_018879175.1
SIO_010081: AWJ20_2243
subclass of: SO_0000673
so part of: AWJ20_2243
location: complement(<770734..>771948)
location: region:770734-771948:-1
so has part: feature:770734-771948:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:770734-771948:-1:exon

AWJ20_2243
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CLB3
locus tag: AWJ20_2243
inference: similar to AA sequence:KEGG_Orthology:K06659
codon start: 1
product: B-type cyclin CLB3
translation: MKSASHSPQTGPYRRRPRKVNDHALDMMAKEMSQQVHSEYGQDIIAHMDKMQRLTAADAGLMDLQPEIEWHMRPFLLDFLIDTHVALRLQPQTLFLAINLIDRYCSMRVVYRKHYQLVGCTALWIAAKYEDKKSRIPTINDLTNMCCKAYEGDMFVQMEGHVLNTLNWTIGHPTVQSYLDVLVASESTSPTVRHVAQYLCEISLYHRAFISLTPSAIASAAFNLAKHLLTANDHAPFPVYLSSEENQTMSLLYQHMNSPSKSLHRKYSSSTLSQATHLVSSFLARQQRASLRMPPTPPPSSLLTNLTPPSLSSSVSSATNSPGESPIYATTARIIPQHSKTMHIKIPAPFKSEGYLTPPCTPDDINGPLNNRSNSIASVASAASYHHNSAFTSVPMEYTQSMET
SIO_010081: AWJ20_2243
subclass of: SO_0000673
so part of: AWJ20_2243
location: complement(770734..771948)
location: region:770734-771948:-1
so has part: feature:770734-771948:-1:exon

XP_018737115.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:770734-771948:-1:exon

AWJ20_2244
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TNA1
locus tag: AWJ20_2244
so part of: sequence
location: <782255..>783319
location: region:782255-783319:1
so has part: feature:782255-783319:1:exon
subclass of: SO_0000010

30034134
type: Gene
SIO_000068: ncbigene

position:782255:1
position: 782255
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:783319:1
position: 783319
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:782255-783319:1:exon

AWJ20_2244
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TNA1
locus tag: AWJ20_2244
product: Tna1p
transcript id: XM_018879176.1
SIO_010081: AWJ20_2244
subclass of: SO_0000673
so part of: AWJ20_2244
location: <782255..>783319
location: region:782255-783319:1
so has part: feature:782255-783319:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:782255-783319:1:exon

AWJ20_2244
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TNA1
locus tag: AWJ20_2244
note: High affinity nicotinic acid plasma membrane permease; responsible for uptake of low levels of nicotinic acid; expression of the gene increases in the absence of extracellular nicotinic acid or para-aminobenzoate (PABA); GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence ISS] [PMID 9678606]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015663 - nicotinamide mononucleotide transmembrane transporter activity [Evidence IMP] [PMID 10869563]; GO_process: GO:0015890 - nicotinamide mononucleotide transport [Evidence IEP,IMP] [PMID 10869563]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Tna1p
translation: MMAFRFLMGVFETGYSPGVPYYLTFFYYRHEIAWRISVFCVAAPIATTFSGALAYGITKNTNLAIASWRVLFLVESLPTIALGLWGYYALPNSSADSRFLTEHEKNIAKARLARQISKVEMSRSFRVKDFLTSLIDPKVVLPMVMYFSINVSYSSLPVFTPAIIHGMGFTSVNSQGLSAIPYIYTTVIVLLSCYLSDRWRVRGAFVTILSLKGAVGWLLLALCKTTGVRYFALFLASSGIFSCVPLMLTWMSNNQGTEQKRGIGFMFINILGQTGPLVGTRLFPASEAPLYIKGCWISFGFTVFLSTCSVVLALHLIYENRKLERKYGPAEDTTQASNSVSEDGEVNPNFRYIW
SIO_010081: AWJ20_2244
subclass of: SO_0000673
so part of: AWJ20_2244
location: 782255..783319
location: region:782255-783319:1
so has part: feature:782255-783319:1:exon

XP_018737116.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:782255-783319:1:exon

AWJ20_2245
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2245
so part of: sequence
location: complement(<783493..>783963)
location: region:783493-783963:-1
so has part: feature:783493-783963:-1:exon
subclass of: SO_0000010

30034135
type: Gene
SIO_000068: ncbigene

position:783493:-1
position: 783493
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:783963:-1
position: 783963
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:783493-783963:-1:exon

AWJ20_2245
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2245
product: hypothetical protein
transcript id: XM_018879177.1
SIO_010081: AWJ20_2245
subclass of: SO_0000673
so part of: AWJ20_2245
location: complement(<783493..>783963)
location: region:783493-783963:-1
so has part: feature:783493-783963:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:783493-783963:-1:exon

AWJ20_2245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2245
codon start: 1
product: hypothetical protein
translation: MSRSLSKPSDFTGGIELEKIIASNRTKPLVIFIEGTTSNGKGLLPFVSNVPISALPANTDIYPSVLKYTPPDPSTTPIPGSLPGWVIKVLSTQMTITARIKFANKLSTNPQNNEAAFANEIADSITRVGRIRKLGPAVDLAAKREFLSAWYRGRSS
SIO_010081: AWJ20_2245
subclass of: SO_0000673
so part of: AWJ20_2245
location: complement(783493..783963)
location: region:783493-783963:-1
so has part: feature:783493-783963:-1:exon

XP_018737117.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:783493-783963:-1:exon

AWJ20_2246
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TAZ1
locus tag: AWJ20_2246
so part of: sequence
location: <784705..>785826
location: region:784705-785826:1
so has part: feature:784705-785826:1:exon
subclass of: SO_0000010

30034136
type: Gene
SIO_000068: ncbigene

position:784705:1
position: 784705
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:785826:1
position: 785826
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:784705-785826:1:exon

AWJ20_2246
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TAZ1
locus tag: AWJ20_2246
product: Taz1p
transcript id: XM_018879178.1
SIO_010081: AWJ20_2246
subclass of: SO_0000673
so part of: AWJ20_2246
location: <784705..>785826
location: region:784705-785826:1
so has part: feature:784705-785826:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:784705-785826:1:exon

AWJ20_2246
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TAZ1
locus tag: AWJ20_2246
inference: similar to AA sequence:KEGG_Orthology:K13511
note: Lyso-phosphatidylcholine acyltransferase; required for normal phospholipid content of mitochondrial membranes; major determinant of the final acyl chain composition of the mitochondrial-specific phospholipid cardiolipin; mutations in human ortholog tafazzin cause Barth syndrome, a rare X-linked disease characterized by skeletal and cardiomyopathy and bouts of cyclic neutropenia; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031307 - integral component of mitochondrial outer membrane [Evidence IDA] [PMID 16135531]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 16880272]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16880272]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 15304507]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 15588229]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0047184 - 1-acylglycerophosphocholine O-acyltransferase activity [Evidence IEA]; GO_function: GO:0047184 - 1-acylglycerophosphocholine O-acyltransferase activity [Evidence IMP] [PMID 15588229]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA,IEA]; GO_process: GO:0035965 - cardiolipin acyl-chain remodeling [Evidence IMP] [PMID 14651618]; GO_process: GO:0032048 - cardiolipin metabolic process [Evidence IMP] [PMID 14651618]; GO_process: GO:0007007 - inner mitochondrial membrane organization [Evidence IMP] [PMID 14651618]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_pro…
codon start: 1
product: Taz1p
translation: MSFQQISNNGYKFLTHYPRQNKYWKAASKATLGAVGLWSKLTLGAISTPKMHNTDILTEAYRTSKLENRGLLTVMNHTSVLDEPLVWGGLLPVRHYFMKDGLRWALGADNVCFKNSFTKMFFSLGQVLATKRFGVGPFQGSIDASINLLSSNQTKYSAESESNNGKGGIVLSASAASDSDSIPMNKSIIDRPGWVHIFPETFVHQPYPPHQHTLKYFHWGVSRLILESSQPPIVVPIYTHGLEKIIPEDESYIGGLRKRLGSKVEFNVGMPLDESAVASFRKEWLGMVRDQHKQGAIQALDISNNIYESLNEPLMTGTAARDLRSRVAAFVREGVDATRLQLGFEQSDPRMADASFWHNQKEVRLAGKMHNRS
SIO_010081: AWJ20_2246
subclass of: SO_0000673
so part of: AWJ20_2246
location: 784705..785826
location: region:784705-785826:1
so has part: feature:784705-785826:1:exon

XP_018737118.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:784705-785826:1:exon

AWJ20_2247
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: HFI1
locus tag: AWJ20_2247
so part of: sequence
location: <786879..>787613
location: region:786879-787613:1
so has part: feature:786879-787613:1:exon
subclass of: SO_0000010

30034137
type: Gene
SIO_000068: ncbigene

position:786879:1
position: 786879
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:787613:1
position: 787613
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:786879-787613:1:exon

AWJ20_2247
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: HFI1
locus tag: AWJ20_2247
product: Hfi1p
transcript id: XM_018879179.1
SIO_010081: AWJ20_2247
subclass of: SO_0000673
so part of: AWJ20_2247
location: <786879..>787613
location: region:786879-787613:1
so has part: feature:786879-787613:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:786879-787613:1:exon

AWJ20_2247
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: HFI1
locus tag: AWJ20_2247
note: Adaptor protein required for structural integrity of the SAGA complex; a histone acetyltransferase-coactivator complex that is involved in global regulation of gene expression through acetylation and transcription functions; GO_component: GO:0005671 - Ada2/Gcn5/Ada3 transcription activator complex [Evidence IDA,IPI] [PMID 9154821]; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9674426]; GO_component: GO:0070461 - SAGA-type complex [Evidence IEA]; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IDA] [PMID 12446794]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003713 - transcription coactivator activity [Evidence IMP] [PMID 10048020]; GO_function: GO:0003712 - transcription cofactor activity [Evidence IMP,IPI] [PMID 9154821]; GO_process: GO:0016568 - chromatin modification [Evidence IDA] [PMID 9674426]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 9674426]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9154821]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]
codon start: 1
product: Hfi1p
translation: MASPALLMNGNLAKNILNGGSSAGSAASVGTPGPSNGGGLNLEGNGMTGAITPAKTISGSALSTNPTLTVPTKAISANSPQAQSMTGNTSSSKRLDVDTIMIEFQKSLGDNWDRYRDVITSFLIGRLTRFELQEELDQILDKNAIKLHNHFLLTNLANSLRDPPPGEQGSLSGWFKKQKDGARNVKGDSQLAKLKEDILGLSVRERKRIKAIARVRKRHNQPLFQARGSNPESLNSRASTPDSS
SIO_010081: AWJ20_2247
subclass of: SO_0000673
so part of: AWJ20_2247
location: 786879..787613
location: region:786879-787613:1
so has part: feature:786879-787613:1:exon

XP_018737119.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:786879-787613:1:exon

AWJ20_2248
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: HFI1
locus tag: AWJ20_2248
so part of: sequence
location: <787761..>788573
location: region:787761-788573:1
so has part: feature:787761-788573:1:exon
subclass of: SO_0000010

30034138
type: Gene
SIO_000068: ncbigene

position:787761:1
position: 787761
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:788573:1
position: 788573
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:787761-788573:1:exon

AWJ20_2248
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: HFI1
locus tag: AWJ20_2248
product: Hfi1p
transcript id: XM_018879180.1
SIO_010081: AWJ20_2248
subclass of: SO_0000673
so part of: AWJ20_2248
location: <787761..>788573
location: region:787761-788573:1
so has part: feature:787761-788573:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:787761-788573:1:exon

AWJ20_2248
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: HFI1
locus tag: AWJ20_2248
note: Adaptor protein required for structural integrity of the SAGA complex; a histone acetyltransferase-coactivator complex that is involved in global regulation of gene expression through acetylation and transcription functions; GO_component: GO:0005671 - Ada2/Gcn5/Ada3 transcription activator complex [Evidence IDA,IPI] [PMID 9154821]; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9674426]; GO_component: GO:0070461 - SAGA-type complex [Evidence IEA]; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IDA] [PMID 12446794]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003713 - transcription coactivator activity [Evidence IMP] [PMID 10048020]; GO_function: GO:0003712 - transcription cofactor activity [Evidence IMP,IPI] [PMID 9154821]; GO_process: GO:0016568 - chromatin modification [Evidence IDA] [PMID 9674426]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 9674426]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9154821]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]
codon start: 1
product: Hfi1p
translation: MLPKIPFINEKDKAKLQSGGTAASGAAGSGSSAATPASPNKQNKGASPAVDTSSSSSNNNHSLANPMVWTQDIIHSYEAPLASEIYELPDNDSLNARMLGISLEHGLLHGIDNGVCDIMIAGLEHYLKDVVQQIFDKARLRKIPDSANTSIFEQSSPRTASVSGAASALTEPISKRGGSISQTTNPFSAPATSLAGSFEDTMTAEDMAMALDTAPHSFVEMTGPVYRLKNTMLTDEESADPAERPPTPMFNSHIESQPEIANLLKDIMSS
SIO_010081: AWJ20_2248
subclass of: SO_0000673
so part of: AWJ20_2248
location: 787761..788573
location: region:787761-788573:1
so has part: feature:787761-788573:1:exon

XP_018737120.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:787761-788573:1:exon

AWJ20_2249
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2249
so part of: sequence
location: complement(<788880..>789293)
location: region:788880-789293:-1
so has part: feature:788880-789293:-1:exon
subclass of: SO_0000010

30034139
type: Gene
SIO_000068: ncbigene

position:788880:-1
position: 788880
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:789293:-1
position: 789293
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:788880-789293:-1:exon

AWJ20_2249
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2249
product: hypothetical protein
transcript id: XM_018879181.1
SIO_010081: AWJ20_2249
subclass of: SO_0000673
so part of: AWJ20_2249
location: complement(<788880..>789293)
location: region:788880-789293:-1
so has part: feature:788880-789293:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:788880-789293:-1:exon

AWJ20_2249
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2249
codon start: 1
product: hypothetical protein
translation: MIIPNSSLGSESVPKRPYEQLKPVGLGSKFSKAPSASDYLCSLCEASPAKYTCPKCLKLYCSLDCYKGPNHVKCSKLFQESKEQPAEKSSKEEQAKMLKILEDFNLAEPNGWKYELAPELAKKLKIKKDKQTQEQDP
SIO_010081: AWJ20_2249
subclass of: SO_0000673
so part of: AWJ20_2249
location: complement(788880..789293)
location: region:788880-789293:-1
so has part: feature:788880-789293:-1:exon

XP_018737121.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:788880-789293:-1:exon

AWJ20_2250
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: AEP3
locus tag: AWJ20_2250
so part of: sequence
location: <789627..>792329
location: region:789627-792329:1
so has part: feature:789627-792329:1:exon
subclass of: SO_0000010

30034141
type: Gene
SIO_000068: ncbigene

position:789627:1
position: 789627
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:792329:1
position: 792329
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:789627-792329:1:exon

AWJ20_2250
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: AEP3
locus tag: AWJ20_2250
product: Pentatricopeptide repeat-containing protein At1g63130, mitochondrial
transcript id: XM_018879183.1
SIO_010081: AWJ20_2250
subclass of: SO_0000673
so part of: AWJ20_2250
location: <789627..>792329
location: region:789627-792329:1
so has part: feature:789627-792329:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:789627-792329:1:exon

AWJ20_2250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: AEP3
locus tag: AWJ20_2250
codon start: 1
product: Pentatricopeptide repeat-containing protein At1g63130, mitochondrial
translation: MRALSRLAAGSLRPRLRNISQQNAGALLVCNSIGLELLEHRLLVPSHGPTPTIIKRNYNPFKKQPKWESDTKKSKNTEECDQLARKLRESLASQADSKQVKKIIFDLVNVSQHRVSGEYIPLIERALQKFHFLSKKSKLLSIDEVQTLYRSVVQLDATAGSNMDADKDKVDPARGWLLQSSVSQSSSESTLITKLYSVLYNSQSQLPTTDRVQNGLLYMKYLRSENLIVESRKLLTALIQDATILASLDEPTILQFTSIIQNINPDVDSLIALYEILGSTGSLSLTLFHEGILAFTEIASKHPENESTQQLMKFLNSTIFIDSKLEPTRETIIIALDCCLTLSSAECGKRLLRTLVKPRLDDLLADDSDPESSLQFYELLLMSCSKFGEDVATGKKIVDRILTSFTPDQMAKETWDVLAQWTVYYSPDTDVLETLIDQMVEHGFNPDEVTLSDVVSIAIGAAKRTDKYIDSVVNMFNLKFDVDSNVQTFAFLIDRKLHSCDLEAAQKLFQNSITASGCDWGVDSQRHIPTLDRLLVALCTSPPVDQRNVFEVYQQVLMFTRTVGYNAQCELLKMFLSIGNSYDVELFIKEQFGDRPGLPWQAYSEIYHVMFDYIMTCKDYKLAWDIYGLLNGLIKLPYESYYTAMELFCRLGRPDAALLILKYLRVRSRKEAIPSPDRNMYILLFNEFGKTLYEEGVQELQGLLRTDLYTESDIEIMNSILGAYCNLQDPHRTKNTWLEINGFPEGQGVNNDTITIMIKHLTRYSLPEVEKLWVSFPETYNLTPDADNLRQYVIANCYHGYYMRALEVTKHMEQTYGIVPGRDIIEALYNWTMLDSRKKLVEKWAIETHPDTWKQLQESNSLKTYVLPDNVDNDSEDNLRAQTIQTMEADDHKNSTLITR
SIO_010081: AWJ20_2250
subclass of: SO_0000673
so part of: AWJ20_2250
location: 789627..792329
location: region:789627-792329:1
so has part: feature:789627-792329:1:exon

XP_018737122.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:789627-792329:1:exon

AWJ20_2251
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ROX1
locus tag: AWJ20_2251
so part of: sequence
location: <801844..>804561
location: region:801844-804561:1
so has part: feature:801844-804561:1:exon
subclass of: SO_0000010

30034142
type: Gene
SIO_000068: ncbigene

position:801844:1
position: 801844
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:804561:1
position: 804561
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:801844-804561:1:exon

AWJ20_2251
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ROX1
locus tag: AWJ20_2251
product: Rox1p
transcript id: XM_018879184.1
SIO_010081: AWJ20_2251
subclass of: SO_0000673
so part of: AWJ20_2251
location: <801844..>804561
location: region:801844-804561:1
so has part: feature:801844-804561:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:801844-804561:1:exon

AWJ20_2251
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ROX1
locus tag: AWJ20_2251
note: Heme-dependent repressor of hypoxic genes; mediates aerobic transcriptional repression of hypoxia induced genes such as COX5b and CYC7; repressor function regulated through decreased promoter occupancy in response to oxidative stress; contains an HMG domain that is responsible for DNA bending activity; involved in the hyperosmotic stress resistance; GO_component: GO:0000790 - nuclear chromatin [Evidence IC] [PMID 10446242]; GO_component: GO:0000790 - nuclear chromatin [Evidence IC] [PMID 10487921]; GO_component: GO:0000790 - nuclear chromatin [Evidence IC] [PMID 7565763]; GO_component: GO:0000790 - nuclear chromatin [Evidence IC] [PMID 8413209]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0008301 - DNA binding, bending [Evidence IDA] [PMID 10446242]; GO_function: GO:0008301 - DNA binding, bending [Evidence IDA] [PMID 7565763]; GO_function: GO:0001078 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription [Evidence IMP] [PMID 10446242]; GO_function: GO:0001135 - RNA polymerase II transcription factor recruiting transcription factor activity [Evidence IMP] [PMID 14665463]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 10446242]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 10487921]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 8413209]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 10446242]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 10487921]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 16835…
codon start: 1
product: Rox1p
translation: MSRTDDSNEHDTNKNNLPRVYQNVVTSTTNTSSANPPQQQPITTTTITSGNLCVCANNTPRVPRPRNAFILYRQHQHALVVQEHPGKSNPEISKIIGEQWRSLPQKEKDFWIQLGDEEKKSHLERFPDYRYQPRRSSKRGGSTSGTSTPTGTGQIGEATICPNCKGLIINGPGYPNSNANNNNNVNVNALANATSNITTAVTVNPNKPLDFGNSAPGAGQTSGTATTPGPGVPQSSISSPAIPSPPLRPYQSAPGTQTPPLPYQQHPQQQQQQHPQQQQQHSQQHPQQQQQQPQSHVQHSSLPPQHSSSVPPPLHYDNKQYPYQPPHQSPHQLSHQPQHQPPHQTPHQPPHQPQHPSQSYYPYPPPPPPPSQTHVNTLTSLTQVVGSHRASAPQVPSAHQTILPNHQQQGGPRHQSAPEAFPLNPPPLYSSRSPTVSSSSLLTDTSSIATSHSSISSASSSSAPGSISSASGVSGNLLPRIVPRPQDEILGTLPGSIPKSPIARQLSAGSPFKPRSVSSPAPEGLHPPPEIHPRHSSLDRHASPSWNYPTQSASQSPIPSAATSPSLGSTVPNSSQGISSGTGSTFQLYNRRQTSSVGLRPSASSHSLSSMTHGPGSSIPHAGPVSLLAEEEKSAKRRRTSSHYDPLGPGPAATTNSGPPPSHYHHHVTSPHHGTSRLNQASAPPAPSPVETFGFREKADLLSTICEPLHHHHHHRSTSIVETDRKGRIIAVEGKDLELVEAITERLGARLEGSNCKYTPHLFEQKPYFMYTKSAVNMFKVSCLHQLVSELNLSHFKYGIIGGYLMTLADELADQESPLTAAEQTSHRLTYRHRWMTNVNVLRGLPGPDYLILIDQDNQADATSVSVTTLNGGSKIIVATLGNLRTNEVIDRAVDGMINGITGKE
SIO_010081: AWJ20_2251
subclass of: SO_0000673
so part of: AWJ20_2251
location: 801844..804561
location: region:801844-804561:1
so has part: feature:801844-804561:1:exon

XP_018737123.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:801844-804561:1:exon

AWJ20_2252
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: VTI1
locus tag: AWJ20_2252
so part of: sequence
location: complement(<805065..>805475)
location: region:805065-805475:-1
so has part: feature:805065-805475:-1:exon
subclass of: SO_0000010

30034143
type: Gene
SIO_000068: ncbigene

position:805065:-1
position: 805065
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:805475:-1
position: 805475
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:805065-805475:-1:exon

AWJ20_2252
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: VTI1
locus tag: AWJ20_2252
product: Vti1p
transcript id: XM_018879185.1
SIO_010081: AWJ20_2252
subclass of: SO_0000673
so part of: AWJ20_2252
location: complement(<805065..>805475)
location: region:805065-805475:-1
so has part: feature:805065-805475:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:805065-805475:-1:exon

AWJ20_2252
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: VTI1
locus tag: AWJ20_2252
inference: similar to AA sequence:KEGG_Orthology:K08493
note: Protein involved in cis-Golgi membrane traffic; v-SNARE that interacts with two t-SNARES, Sed5p and Pep12p; required for multiple vacuolar sorting pathways; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0031201 - SNARE complex [Evidence IPI] [PMID 10397773]; GO_component: GO:0030173 - integral component of Golgi membrane [Evidence IDA] [PMID 9398683]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031902 - late endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0005484 - SNAP receptor activity [Evidence IDA] [PMID 19805279]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IMP] [PMID 9199167]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IMP] [PMID 9398683]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IMP] [PMID 10385523]; GO_process: GO:0006906 - vesicle fusion [Evidence IDA] [PMID 11739407]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]
codon start: 1
product: Vti1p
translation: MAIEVQNIPSSNRSKFNSKLREYRTNVENARKELRKLSETSDRRALFGDRLASGSPDNIPLDQRQQLLSGQASLERSSQRLRDSQRVANETESIGANILSDLRGQREQLTNSRNVLLEADGYVDKSIRTLRGMARR
SIO_010081: AWJ20_2252
subclass of: SO_0000673
so part of: AWJ20_2252
location: complement(805065..805475)
location: region:805065-805475:-1
so has part: feature:805065-805475:-1:exon

XP_018737124.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:805065-805475:-1:exon

AWJ20_2253
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2253
so part of: sequence
location: complement(<805559..>805786)
location: region:805559-805786:-1
so has part: feature:805559-805786:-1:exon
subclass of: SO_0000010

30034144
type: Gene
SIO_000068: ncbigene

position:805559:-1
position: 805559
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:805786:-1
position: 805786
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:805559-805786:-1:exon

AWJ20_2253
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2253
product: hypothetical protein
transcript id: XM_018879186.1
SIO_010081: AWJ20_2253
subclass of: SO_0000673
so part of: AWJ20_2253
location: complement(<805559..>805786)
location: region:805559-805786:-1
so has part: feature:805559-805786:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:805559-805786:-1:exon

AWJ20_2253
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2253
codon start: 1
product: hypothetical protein
translation: MSSPLDSGAGTELFASYDSDFQLAYSEITQKLDDIPNLTTEQQKPAIKAAERAVEEAYEIVSRKPEVASPINPSL
SIO_010081: AWJ20_2253
subclass of: SO_0000673
so part of: AWJ20_2253
location: complement(805559..805786)
location: region:805559-805786:-1
so has part: feature:805559-805786:-1:exon

XP_018737125.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:805559-805786:-1:exon

AWJ20_2254
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2254
so part of: sequence
location: <806909..>808876
location: region:806909-808876:1
so has part: feature:806909-808876:1:exon
subclass of: SO_0000010

30034145
type: Gene
SIO_000068: ncbigene

position:806909:1
position: 806909
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:808876:1
position: 808876
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:806909-808876:1:exon

AWJ20_2254
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2254
product: Peroxisomal biogenesis factor 8
transcript id: XM_018879187.1
SIO_010081: AWJ20_2254
subclass of: SO_0000673
so part of: AWJ20_2254
location: <806909..>808876
location: region:806909-808876:1
so has part: feature:806909-808876:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:806909-808876:1:exon

AWJ20_2254
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2254
codon start: 1
product: Peroxisomal biogenesis factor 8
translation: MSYLTDITQVVDSIVRELQNSSIYSSSGPADLARRKALIGRAIQYLPSLRNEHNVPLLALELLSSPVVALPEPVCSDFLVDGFRSAVARKYSISDPTIPPQEWTKYLVRPVIDRLTAEGALWRILPLLSGLIQASKYEILADIERSERGLRQSKITYVPSVADLRYQQDWYVRVFNQIITLPLESDSDYKKYRDIINMALITLAKCQWALDPDVYSRLVHAETIVRSLQLIYSYPDTSVINSLRLQSSPVIELVNNLLGGFSNIIRQSVESNYRNNLSFNDLDLALNHIHMFAEDLSRTWVRLKHSPDSITKSETEQWQILKQFIFAICLQLQGFAGLLLHVNRPKLVPVAYLSAKILKTLSPVYFILDKIGSATFEPFSFTYNVCIDVLTLSRGTLRQAQESVDSLIRALAGSCNLGAVLDNDMDRGKILFLIDLFEKLIHFSSFQVINQIILPFIGEFLVPNRDPTNRKLLTPLLESSHSVMLQYLRLSPEVAVINDNVVMNYLDTLLALFPHDLSSPQLLLALKTIAQSVAAPTRPTKQLLHQFLERLYFKCKITLPAIPLTTKAEENGPPTVRSVFVSSLIHSLPLLEPGDFQFWLERTDKLFLRRGPYYSPLFQAENEYLTEDMEKMISGELDLSLADIGIRWWHHSSKL
SIO_010081: AWJ20_2254
subclass of: SO_0000673
so part of: AWJ20_2254
location: 806909..808876
location: region:806909-808876:1
so has part: feature:806909-808876:1:exon

XP_018737126.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:806909-808876:1:exon

AWJ20_2255
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MMM1
locus tag: AWJ20_2255
so part of: sequence
location: complement(<808942..>810183)
location: region:808942-810183:-1
so has part: feature:808942-810183:-1:exon
subclass of: SO_0000010

30034146
type: Gene
SIO_000068: ncbigene

position:808942:-1
position: 808942
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:810183:-1
position: 810183
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:808942-810183:-1:exon

AWJ20_2255
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MMM1
locus tag: AWJ20_2255
product: ERMES complex subunit MMM1
transcript id: XM_018879188.1
SIO_010081: AWJ20_2255
subclass of: SO_0000673
so part of: AWJ20_2255
location: complement(<808942..>810183)
location: region:808942-810183:-1
so has part: feature:808942-810183:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:808942-810183:-1:exon

AWJ20_2255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MMM1
locus tag: AWJ20_2255
inference: similar to AA sequence:KEGG_Orthology:K17764
codon start: 1
product: ERMES complex subunit MMM1
translation: MSTHHSYDISTSRVIPTPTYPAIVVANDDFLPPPTPPQGTSAAVSFAYGLLVGQVSVLIVVVAFIRFFIFTDTSSERKDYVTALSRRDQRNAAKLMGANNVPSENVINTILEKTYYNVETHNAESVDWFTVLIAQVVSQFREDARADDSMLRSLNDLLNGDIIPDFIDKIRVTELNIGDDYPIFSNCKILYNRNELGQSQGQDGLEAQIDVDLTDTVTLGIETRLLLNFPKALFAVLPVSLSVSIVRFSGTLSVSLRKSPAVPKAPNTVPASSNRSANATSTSNSDDANDGTTYLSFSFDPNYRLEFDIKSLVGARSRLQDIPKIGQFIESRLRKWFTDRCVSPRCQQIPLPSFWPRSKTTAVVPPATNANTNGTNNVNPSGVNGLPPSSPLVLPVDVAESLRRRRQSHLEVR
SIO_010081: AWJ20_2255
subclass of: SO_0000673
so part of: AWJ20_2255
location: complement(808942..810183)
location: region:808942-810183:-1
so has part: feature:808942-810183:-1:exon

XP_018737127.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:808942-810183:-1:exon

AWJ20_2256
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: KRI1
locus tag: AWJ20_2256
so part of: sequence
location: <810952..>812676
location: region:810952-812676:1
so has part: feature:810952-812676:1:exon
subclass of: SO_0000010

30034147
type: Gene
SIO_000068: ncbigene

position:810952:1
position: 810952
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:812676:1
position: 812676
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:810952-812676:1:exon

AWJ20_2256
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: KRI1
locus tag: AWJ20_2256
product: Kri1p
transcript id: XM_018879189.1
SIO_010081: AWJ20_2256
subclass of: SO_0000673
so part of: AWJ20_2256
location: <810952..>812676
location: region:810952-812676:1
so has part: feature:810952-812676:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:810952-812676:1:exon

AWJ20_2256
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: KRI1
locus tag: AWJ20_2256
inference: similar to AA sequence:KEGG_Orthology:K14786
note: Essential nucleolar protein required for 40S ribosome biogenesis; associate with snR30; physically and functionally interacts with Krr1p; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 22180534]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11027267]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11027267]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]
codon start: 1
product: Kri1p
translation: MARKKSARRKALEAQAKEQGESPAKVENKDKLGLEEESDEDINTLSINQEYAKRFEHNKSREEKHRQEEKDKAKLLEDSEEDAEDSSDDEDEDDFGELLTEDVDDGIQKVLETIRTNPKALLDPSVKFFDNSENAASANGNGTSKAMYLKDYHRQNLLSGGVHDDDEENDNEEKPYAIQNREDRAKLLAEINKDDEDEEDDGDFLTKRKEQRTIEAIELPDPEQDQKGFLEAYTSSKAWIPSGIDKKTGKEIVPAYGDIVGDEDDEEFDDIADDFETAYNFRYEDPNAAEIVSYARNESTLRRKGDNSRKRAREQKTELKKQEEQSKKAEVNKIKKKKVNEVLSKFEKLKEVIDDDETAAQFENMDLLEGDFDASEWDKRMEQVFNETFYSKKDKNFAGDDKADEEDKDDETKEEPDEPKENIKEAEDEEPERRSRKDKHEAKKEKQKMRQIAEQFVEANLDLALEQEKIDLVSSGTKFRYREVSPDSYGLTARDILLADDKDLNEFVGIKKLAPFRDEEKKKHDRRKYAKKRRLREWRKAVFSTEDEPTDELFEKLVASQDAGQPKKKKQRKR
SIO_010081: AWJ20_2256
subclass of: SO_0000673
so part of: AWJ20_2256
location: 810952..812676
location: region:810952-812676:1
so has part: feature:810952-812676:1:exon

XP_018737128.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:810952-812676:1:exon

AWJ20_2257
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ARP4
locus tag: AWJ20_2257
so part of: sequence
location: complement(<812915..>814231)
location: region:812915-814231:-1
so has part: feature:812915-814231:-1:exon
subclass of: SO_0000010

30034148
type: Gene
SIO_000068: ncbigene

position:812915:-1
position: 812915
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:814231:-1
position: 814231
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:812915-814231:-1:exon

AWJ20_2257
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ARP4
locus tag: AWJ20_2257
product: Arp4p
transcript id: XM_018879190.1
SIO_010081: AWJ20_2257
subclass of: SO_0000673
so part of: AWJ20_2257
location: complement(<812915..>814231)
location: region:812915-814231:-1
so has part: feature:812915-814231:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:812915-814231:-1:exon

AWJ20_2257
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ARP4
locus tag: AWJ20_2257
inference: similar to AA sequence:KEGG_Orthology:K11400
note: Nuclear actin-related protein involved in chromatin remodeling; component of chromatin-remodeling enzyme complexes; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 10952318]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 24034245]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IDA] [PMID 10911987]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14645854]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14690608]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 16299513]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 10436015]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10911987]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11011149]; GO_function: GO:0043140 - ATP-dependent 3'-5' DNA helicase activity [Evidence IDA] [PMID 10952318]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 10436015]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA,IMP] [PMID 10911987]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA] [PMID 16088870]; GO_function: GO:0042393 - histone binding [Evidence IDA] [PMID 10911987]; GO_function: GO:0031493 - nucleosomal histone binding [Evidence IDA] [PMID 10911987]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 12353039]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 15610740]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 16135807]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006325 - chromatin organization [Evidence IMP,IPI] [PMID 10436015]; GO_process: GO:0006338 - chromatin remodeling [Evidence IDA] [PMID 14645854]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 10…
codon start: 1
product: Arp4p
translation: MEIASPMTDGIVSDWDATEKLWRYGLEDILGAQVTEQPLLITEQIWNTDENRKKAMEVAFESLDTPAFYIAKRPVCTLFASGKGSGLVVDIGADIASVTPVLDGLTLFKTSKRSRHAGTYINKHIEALLKASDFDLTPRYLVAARQTGLEPGEKATEYKKRSLLAPVTASFHDFQVSRLIEEFKESMAQVQDTPYTDEAASQAGTDVYSNRVFEFPDGSSVEYGSERFKVAEPLFKPRDFLLEGEELLEAPEVKEEDGDDDDNKDDSKENGKDADSKDKEKGKASKGSKDKGQDGDKDKDKEKPTEKSAATAAKELKALVYTDRTQGPFTTTGISDMIIDAINSCDVDIRANLANNVIITGGTSLIQGFTDRVNEDLVHALPGYKIRIHAPGNLIERKFSAWIGGSILASLGTFHQLWISKKEYEEVGVSKLLEKRFR
SIO_010081: AWJ20_2257
subclass of: SO_0000673
so part of: AWJ20_2257
location: complement(812915..814231)
location: region:812915-814231:-1
so has part: feature:812915-814231:-1:exon

XP_018737129.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:812915-814231:-1:exon

AWJ20_2258
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MIC60
locus tag: AWJ20_2258
so part of: sequence
location: <815365..>817166
location: region:815365-817166:1
so has part: feature:815365-817166:1:exon
subclass of: SO_0000010

30034149
type: Gene
SIO_000068: ncbigene

position:815365:1
position: 815365
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:817166:1
position: 817166
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:815365-817166:1:exon

AWJ20_2258
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MIC60
locus tag: AWJ20_2258
product: Mic60p
transcript id: XM_018879191.1
SIO_010081: AWJ20_2258
subclass of: SO_0000673
so part of: AWJ20_2258
location: join(<815365..815371,815470..>817166)
location: region:815365-817166:1
so has part: feature:815365-815371:1:exon
so has part: feature:815470-817166:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:815365-815371:1:exon

position:815371:1
position: 815371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:815470-817166:1:exon

position:815470:1
position: 815470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

AWJ20_2258
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MIC60
locus tag: AWJ20_2258
inference: similar to AA sequence:KEGG_Orthology:K17785
note: Component of the MICOS complex; MICOS (formerly MINOS or MitOS) is a mitochondrial inner membrane complex that extends into the intermembrane space and has a role in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane; Mic60p is also involved in import of intermembrane space (IMS) proteins, probably by positioning Mia40p relative to the TOM complex to receive incoming proteins; ortholog of mammalian mitofilin; GO_component: GO:0061617 - MICOS complex [Evidence IDA] [PMID 21944719]; GO_component: GO:0061617 - MICOS complex [Evidence IDA] [PMID 21987634]; GO_component: GO:0061617 - MICOS complex [Evidence IDA] [PMID 22009199]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030061 - mitochondrial crista [Evidence IDA] [PMID 19528297]; GO_component: GO:0044284 - mitochondrial crista junction [Evidence IDA] [PMID 22009199]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 19528297]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0042407 - cristae formation [Evidence IMP] [PMID 19528297]; GO_process: GO:0042407 - cristae formation [Evidence IMP] [PMID 21944719]; GO_process: GO:0042407 - cristae formation [Evidence IMP] [PMID 21987634]; GO_process: GO:0042407 - cristae formation [Evidence IMP] [PMID 22009199]; GO_process: GO:0045041 - protein import into mitochondrial intermembrane space [Evidence IMP,IPI] [PMID 21944719]
codon start: 1
product: Mic60p
translation: MTVTPPVKVTPPVIEPVVKEAPKQKKSHGFRNFVLSTVFLSSALYGAGVWYSLKDDTFHDYFTEYVPFSESIIVAIEEREFRSKFRDVNINQGGATASTAVANGSGPLLQSIPGKLNDLKVKIRPGSSAEPKEISSDQATKSSSSSAVTAASSSSKSADKNASIARPSSSDSSAKNIVTEKKEGIIPSGIGAPTAGGSSSHLLPLIRVPGDINPLVASSVETLNQFIQSVNTSTYGEDIVHKISQEVSKLSHSINALNKENQETLSKSLESQAAKFAALGEARANEVKEALASQEDKWRQQFQEEQARILKLYNDRLLTEVEATKNLVISHANNRLLAIHAEREKQFAQEIQDRVEKERDGRLSKIKELAEKVEALSHLTEKTSSIISESDSVSQYHIAVGKLNSVLKFSNEPVPLGPYIEEVRKALSDDPLVQSILDNIPEDAYKEGVLTNAQLAARFKLLVPELRSASLLPPNAGVAGHIGSIIFSQLLAGKSGNPVGNDNESIFARAETALGEGRVVDAVAEVNSLTGWPKKLAADWLSEGRKRSEVDFLAQALADEGKLWALK
SIO_010081: AWJ20_2258
subclass of: SO_0000673
so part of: AWJ20_2258
location: join(815365..815371,815470..817166)
location: region:815365-817166:1
so has part: feature:815365-815371:1:exon
so has part: feature:815470-817166:1:exon

XP_018737130.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:815365-815371:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:815470-817166:1:exon

AWJ20_2259
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PAP2
locus tag: AWJ20_2259
so part of: sequence
location: complement(<817387..>819852)
location: region:817387-819852:-1
so has part: feature:817387-819852:-1:exon
subclass of: SO_0000010

30034150
type: Gene
SIO_000068: ncbigene

position:817387:-1
position: 817387
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:819852:-1
position: 819852
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:817387-819852:-1:exon

AWJ20_2259
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PAP2
locus tag: AWJ20_2259
product: non-canonical poly(A) polymerase PAP2
transcript id: XM_018879192.1
SIO_010081: AWJ20_2259
subclass of: SO_0000673
so part of: AWJ20_2259
location: complement(<817387..>819852)
location: region:817387-819852:-1
so has part: feature:817387-819852:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:817387-819852:-1:exon

AWJ20_2259
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PAP2
locus tag: AWJ20_2259
inference: similar to AA sequence:KEGG_Orthology:K03514
note: Non-canonical poly(A) polymerase; involved in nuclear RNA degradation as a component of TRAMP; catalyzes polyadenylation of hypomodified tRNAs, and snoRNA and rRNA precursors; required for mRNA surveillance and maintenance of genome integrity, serving as a link between RNA and DNA metabolism; overlapping but non-redundant functions with Trf5p; relocalizes to cytosol in response to hypoxia; PAP2 has a paralog, TRF5, that arose from the whole genome duplication; GO_component: GO:0031499 - TRAMP complex [Evidence IDA] [PMID 15828860]; GO_component: GO:0031499 - TRAMP complex [Evidence IDA] [PMID 15935758]; GO_component: GO:0031499 - TRAMP complex [Evidence IDA] [PMID 15935759]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 16541108]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10066793]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0051575 - 5'-deoxyribose-5-phosphate lyase activity [Evidence IDA,IMP] [PMID 17983848]; GO_function: GO:0034459 - ATP-dependent 3'-5' RNA helicase activity [Evidence IDA] [PMID 22532666]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004652 - polynucleotide adenylyltransferase activity [Evidence IDA] [PMID 12062100]; GO_function: GO:0004652 - polynucleotide adenylyltransferase activity [Evidence IMP,ISS] [PMID 15828860]; GO_function: GO:0004652 - polynucleotide adenylyltransferase activity [Evidence IDA] [PMID 15935758]; GO_function: GO:0004652 - polynucleotide adenylyltransferase activity [Evidence IDA,IMP] [PMID 15935759]; GO_function: GO:0004652 - polynucleotide adenylyltransferase activity [Evidence IDA,IMP] [PMID 16260630]; GO_function: GO:0004652 - polynucleotide adenylyltransfe…
codon start: 1
product: non-canonical poly(A) polymerase PAP2
translation: MGSKAKKSSPQLASQASSGSLNGLPVGPSAYVAAVEKGTADVGSNNQPQKGLKKLLNKLPKGPKGDSKDQAGNQPKSKAKNKPKKNQPKNQPPEKKPKNQAKSQPNLSKKMSENQLRNQTTSGVNGQIHASEKNHDNYSHQLKPSKSIGTESEMSKKSGIDKIVDGMGNVIEKFKKRQRGSRGGKKRRASMDAIANDYISNVAASGVDHDDAVMDADINTNDDNEDSGFIAFDSDLSDVAESIHTNTFKAFEDEMSMFLSEDEDDDQEDNAVNVSIMTTSTSRTSRKRKFNPEDEDEKASKRINVLSEFPWVVNHDHSQEQEISDWLTLEIKDFVSYMSPSAAEIIARNNAVKRIRGIVKDLWSDADIHVFGSFATDLYLPGSDIDMVVLSKSGSYDTRAHLYKLSSKLKATGIANSLVVVAKARVPIIKFVEKTSNIHIDISFERRNGVEAVQIIRKWTAEYPCIRFFAIIIKHFLARRKMNEVHSGGLGGFSVICLIVSFLKNHPKVSSGAIDPMHNLGVLLIEFFELYGRNFNYDSIALSVRGDMPYLRKDQNPDLDNPRKFMLAIQDPSDETNNLSRGTFNIRGIKKAFSGAFDLLVARCYELEYLSFSDRLGKSILGNVIKFRGPERDFLDSRSEVQSEYELSIENYTSFNGTENDTNDDIIVPSDFEEDESDADVDGNDGEQQDVIGDIYKKQSNSRPNQKLASPPSRPKPNSPKSKPERKSPSTAEHDGDKRATRPAAVEYYNISDSDSDSNAERPNDGTRHTSPTQRGASSKSPITILSDDDASSAEDSRSSSVIDKAQKRDYWLSKGAPTIT
SIO_010081: AWJ20_2259
subclass of: SO_0000673
so part of: AWJ20_2259
location: complement(817387..819852)
location: region:817387-819852:-1
so has part: feature:817387-819852:-1:exon

XP_018737131.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:817387-819852:-1:exon

AWJ20_2260
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: IKS1
locus tag: AWJ20_2260
so part of: sequence
location: <821500..>823359
location: region:821500-823359:1
so has part: feature:821500-823359:1:exon
subclass of: SO_0000010

30034152
type: Gene
SIO_000068: ncbigene

position:821500:1
position: 821500
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:823359:1
position: 823359
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:821500-823359:1:exon

AWJ20_2260
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: IKS1
locus tag: AWJ20_2260
product: protein kinase IKS1
transcript id: XM_018879194.1
SIO_010081: AWJ20_2260
subclass of: SO_0000673
so part of: AWJ20_2260
location: <821500..>823359
location: region:821500-823359:1
so has part: feature:821500-823359:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:821500-823359:1:exon

AWJ20_2260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: IKS1
locus tag: AWJ20_2260
codon start: 1
product: protein kinase IKS1
translation: MSLLGLCPRPRGSSRFARVGRRRSQQLLPSRSNGVWGSAPAAGSSTNGSDRFFISSALLGRGSRGAVYLVEHVLDGFSLGFFALKKVAVGDDHAWLEKVLSEVNLLRMLSHPNLVRYNHVWLEVSSLSSFGPLVPCAYILQEYCNGGTLEEYMMKGRYKPGTDGESDIIPQFQRDPNDRTWTKNDIKAKRDRIRRRMSQQGADGQGYTDFSGRNGGSMSAVVDDNDDEYVAELTIEEIISFMTDIVMGVKYLHQNQIIHRDLKPSNCLLCRIPGQSLPTVLVSDFGEGQIEGLNRMGSGSTGTLEYTAPELVQTVSGRFVAQFSKKTDVFSLGMILHYLCFSRLPYSNVWQERGDLEALTGEVRQFGGFDINISNSKLHRTDLDPQLLALVDAMVSIDPDRRPTADQVLFILGQVNERYRQQQFHQAQTTAMSTASQTSPPPASSTSGTSTAAATTTAVPEITTNTTATSTSTALPINSTTATLRISDTSSSLMSPTLSPSINTPATSSFDMSSSLSSSLVPTVIYSPDHQRPNMLLRYLPTWIQRLAIRNRRSPRQLTSSLLLTKGTLLLIKLATIYKLAPSPYTQAIYMLLGVELATLSIPVSIGLFLAHLVLYSLA
SIO_010081: AWJ20_2260
subclass of: SO_0000673
so part of: AWJ20_2260
location: 821500..823359
location: region:821500-823359:1
so has part: feature:821500-823359:1:exon

XP_018737132.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:821500-823359:1:exon

AWJ20_2261
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: VPS21
locus tag: AWJ20_2261
so part of: sequence
location: complement(<823599..>824246)
location: region:823599-824246:-1
so has part: feature:823599-824246:-1:exon
subclass of: SO_0000010

30034153
type: Gene
SIO_000068: ncbigene

position:823599:-1
position: 823599
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:824246:-1
position: 824246
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:823599-824246:-1:exon

AWJ20_2261
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: VPS21
locus tag: AWJ20_2261
product: Rab family GTPase VPS21
transcript id: XM_018879195.1
SIO_010081: AWJ20_2261
subclass of: SO_0000673
so part of: AWJ20_2261
location: complement(<823599..>824246)
location: region:823599-824246:-1
so has part: feature:823599-824246:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:823599-824246:-1:exon

AWJ20_2261
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: VPS21
locus tag: AWJ20_2261
inference: similar to AA sequence:KEGG_Orthology:K07889
note: Endosomal Rab family GTPase; required for endocytic transport and sorting of vacuolar hydrolases; required for endosomal localization of the CORVET complex; required with YPT52 for MVB biogenesis and sorting; involved in autophagy and ionic stress tolerance; geranylgeranylation required for membrane association; protein abundance increases in response to DNA replication stress; mammalian Rab5 homolog; VPS21 has a paralog, YPT53, that arose from the whole genome duplication; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0005770 - late endosome [Evidence IMP] [PMID 11872141]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 11210571]; GO_function: GO:0003924 - GTPase activity [Evidence IMP] [PMID 8163546]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006895 - Golgi to endosome transport [Evidence IGI,IMP] [PMID 22748138]; GO_process: GO:0006895 - Golgi to endosome transport [Evidence IGI,IMP] [PMID 23612966]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 8163546]; GO_process: GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway [Evidence IGI] [PMID 22748138]; GO_process: GO:0036258 - multivesicular body assembly [Evidence IGI] [PMID 22748138]; GO_process: GO:0036010 - protein localization to endosome [Evidence IGI] [PMID 23264632]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 8163546]; GO_process: GO:001503…
codon start: 1
product: Rab family GTPase VPS21
translation: MSTPRTSTSSPRFAQFKLVLLGESAVGKSSLVNRFAKDQFDDFRESTIGAAFLTQTVQVDPNTIVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQSASLTRAKAWVKELQHQANENIIIALAGNKFDLQESRDVDTSVAEAYAKEAGLLFFETSAKTGENVTELFTAIAKKLPIESVLNRSTRPSGPKGVDLSRSARQPSGANGAGACNC
SIO_010081: AWJ20_2261
subclass of: SO_0000673
so part of: AWJ20_2261
location: complement(823599..824246)
location: region:823599-824246:-1
so has part: feature:823599-824246:-1:exon

XP_018737133.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:823599-824246:-1:exon

AWJ20_2262
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TAE1
locus tag: AWJ20_2262
so part of: sequence
location: complement(<826242..>826967)
location: region:826242-826967:-1
so has part: feature:826242-826967:-1:exon
subclass of: SO_0000010

30034154
type: Gene
SIO_000068: ncbigene

position:826242:-1
position: 826242
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:826967:-1
position: 826967
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:826242-826967:-1:exon

AWJ20_2262
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TAE1
locus tag: AWJ20_2262
product: Tae1p
transcript id: XM_018879196.1
SIO_010081: AWJ20_2262
subclass of: SO_0000673
so part of: AWJ20_2262
location: complement(<826242..>826967)
location: region:826242-826967:-1
so has part: feature:826242-826967:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:826242-826967:-1:exon

AWJ20_2262
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TAE1
locus tag: AWJ20_2262
inference: similar to AA sequence:KEGG_Orthology:K16219
note: AdoMet-dependent proline methyltransferase; catalyzes the dimethylation of ribosomal proteins Rpl12 and Rps25 at N-terminal proline residues; has a role in protein synthesis; fusion protein localizes to the cytoplasm; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 20481588]; GO_function: GO:0071885 - N-terminal protein N-methyltransferase activity [Evidence IDA,IMP] [PMID 20481588]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0018016 - N-terminal peptidyl-proline dimethylation [Evidence IDA,IMP] [PMID 20481588]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IGI,IMP] [PMID 19055778]; GO_process: GO:0032259 - methylation [Evidence IEA]
codon start: 1
product: Tae1p
translation: MPLEPDVPADTHINYDDAVSYWSSVPATVDGMLGGFGTGVVPKVDIIGSNAFVRRLNILQKSASGDQLPRHGLDVGAGIGRITKDFLSKICDQVDLVEPVKNFVDQAHESLADLKKEGKVGTIFNVGMQDFTPEEGKYWLIWCQWCVGHLADDRLVEFFQRCIKGLQPGGYIIVKENNAPVEDDFDDTDSSVTRTDAKFRELFTRAGLDLKLVTKQTGLPRELYPVRMYALRPATDVEPSS
SIO_010081: AWJ20_2262
subclass of: SO_0000673
so part of: AWJ20_2262
location: complement(826242..826967)
location: region:826242-826967:-1
so has part: feature:826242-826967:-1:exon

XP_018737134.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:826242-826967:-1:exon

AWJ20_2263
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SEC61
locus tag: AWJ20_2263
so part of: sequence
location: <829631..>830581
location: region:829631-830581:1
so has part: feature:829631-830581:1:exon
subclass of: SO_0000010

30034155
type: Gene
SIO_000068: ncbigene

position:829631:1
position: 829631
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:830581:1
position: 830581
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:829631-830581:1:exon

AWJ20_2263
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SEC61
locus tag: AWJ20_2263
product: translocon subunit SEC61
transcript id: XM_018879197.1
SIO_010081: AWJ20_2263
subclass of: SO_0000673
so part of: AWJ20_2263
location: <829631..>830581
location: region:829631-830581:1
so has part: feature:829631-830581:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:829631-830581:1:exon

AWJ20_2263
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SEC61
locus tag: AWJ20_2263
inference: similar to AA sequence:KEGG_Orthology:K10956
note: Conserved ER protein translocation channel; essential subunit of Sec61 complex (Sec61p, Sbh1p, and Sss1p); forms channel for SRP-dependent protein import; with Sec63 complex allows SRP-independent protein import into ER; involved in posttranslational soluble protein import into the ER, ERAD of soluble substrates, and misfolded soluble protein export from the ER; GO_component: GO:0005784 - Sec61 translocon complex [Evidence IDA] [PMID 8612571]; GO_component: GO:0005784 - Sec61 translocon complex [Evidence IDA] [PMID 9252322]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0015450 - P-P-bond-hydrolysis-driven protein transmembrane transporter activity [Evidence IMP] [PMID 1550957]; GO_function: GO:0015450 - P-P-bond-hydrolysis-driven protein transmembrane transporter activity [Evidence IDA] [PMID 9252322]; GO_function: GO:0015197 - peptide transporter activity [Evidence IMP] [PMID 10758167]; GO_function: GO:0005048 - signal sequence binding [Evidence IDA] [PMID 12134063]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IPI] [PMID 19696741]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 24314051]; GO_process: GO:0006616 - SRP-dependent cotranslational protein targeting to membrane, translocation [Evidence IDA] [PMID 11076036]; GO_process: GO:0044743 - intracellular protein transmembrane import [Evidence IMP] [PMID 24314051]; GO_process: GO:0070843 - misfolded protein transport [Evidence IMP] [PMID 24314051]; GO_process: GO:0031204 - posttranslational protein targeting to membrane, translocation [Evidence IDA] [PMID 7758110]; GO_process: GO:00…
codon start: 1
product: translocon subunit SEC61
translation: MGGAMLLLIDETLQKGYGFSTGFSLFAVLSVSTKFVWNALSLSTQDIGRGKEFIGAIVSLVHGLFTRNFKNALIESFYRTHLPNVFEVYGNILAFGAVVFLLNFRYDINVKSTKVRTPSSNYPIRLLYTGNVPIYMFYAIVSNLFIFSNILFRLFPSNVVVRLIGTWEQHGDNPQLFAVSGLCYYLQPPFGLVEALWDPIKTVIYASTLILAAIYFAKTWTEISGSSPRDIAKQFKDNDIVIVGHRDVAILRELKKIITPAAAIGGALSAAVIVLPDLLGFTGSGLLMFIGASTIYTYFEIIAQESGQPGFSVGNW
SIO_010081: AWJ20_2263
subclass of: SO_0000673
so part of: AWJ20_2263
location: 829631..830581
location: region:829631-830581:1
so has part: feature:829631-830581:1:exon

XP_018737135.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:829631-830581:1:exon

AWJ20_2264
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MAK5
locus tag: AWJ20_2264
so part of: sequence
location: <831318..>833534
location: region:831318-833534:1
so has part: feature:831318-833534:1:exon
subclass of: SO_0000010

30034156
type: Gene
SIO_000068: ncbigene

position:831318:1
position: 831318
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:833534:1
position: 833534
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:831318-833534:1:exon

AWJ20_2264
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MAK5
locus tag: AWJ20_2264
product: Mak5p
transcript id: XM_018879198.1
SIO_010081: AWJ20_2264
subclass of: SO_0000673
so part of: AWJ20_2264
location: <831318..>833534
location: region:831318-833534:1
so has part: feature:831318-833534:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:831318-833534:1:exon

AWJ20_2264
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MAK5
locus tag: AWJ20_2264
inference: similar to AA sequence:KEGG_Orthology:K14805
note: Essential nucleolar protein; putative DEAD-box RNA helicase required for maintenance of M1 dsRNA virus; involved in biogenesis of large (60S) ribosomal subunits; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 13680366]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence ISS] [PMID 7754712]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 13680366]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 13680366]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 13680366]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 7739558]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]
codon start: 1
product: Mak5p
translation: MAGKALKRKLSSKSNGPQKSGLKKAKKTVALDNLAWKSVDVADGGLDDFEGFYGLEEVDGVSVEVENGTLKFKAAESKEDTENEEKEKAPTNGSAKNKASEKVAPYVSPFAEEEEDDYEDSDSEENQGEEEEEEGESEIDESKESKNKTAKGAENKKKSSGLVSLKTPGNPFDLLEETESEVSAELDWSLPDTTLSSSILTALSALKFYKPTDIQAQVIPEILTDSDVIGKAATGSGKTLAYGIPIIEKHIRLSESIKPAKKWPTALIFGPTRELVHQITKHLEQVWKYGNFTGSGVVAITGGLAIQKQRRLIDNNPAIIVATPGRFLEILTEATSEFRDQFKKCETLVLDEADRLIQEGHFQELEKILDLIGRGRRTRRQTLVFSATFQRDLMKKLDSKRTSSNAGRQASNAGALKILNEKLEFKDKNPVFIDSNPAESVARSVVESIMECGAMEKDLYLYYFLLTYPARSIVFVNSIDTVKRLVPFLKELGLPSLGLHSDMIQKQRLRSLERFKANDKSILVATDVAARGLDIPLIDHVVHYHLPRTADMYIHRSGRTARAGNEGVSLLLCSPDEASGPLIKLKRALYKDNATNKTAMKTFEVEYDFLNRLKPRITLAKQISDTVNQSTHKGKTDAWLKKAVEDLGVDLSDDEIENITGDRRKKNKPEQPKGDLRSLRAQLQSELQRPVGHAGKYLTRGTVNLAQMVTSGKSHQAFLGKEQTSALESLNTKPKSKK
SIO_010081: AWJ20_2264
subclass of: SO_0000673
so part of: AWJ20_2264
location: 831318..833534
location: region:831318-833534:1
so has part: feature:831318-833534:1:exon

XP_018737136.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:831318-833534:1:exon

AWJ20_2265
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SUP45
locus tag: AWJ20_2265
so part of: sequence
location: complement(<833707..>835023)
location: region:833707-835023:-1
so has part: feature:833707-835023:-1:exon
subclass of: SO_0000010

30034157
type: Gene
SIO_000068: ncbigene

position:833707:-1
position: 833707
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:835023:-1
position: 835023
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:833707-835023:-1:exon

AWJ20_2265
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SUP45
locus tag: AWJ20_2265
product: translation termination factor eRF1
transcript id: XM_018879199.1
SIO_010081: AWJ20_2265
subclass of: SO_0000673
so part of: AWJ20_2265
location: complement(<833707..>835023)
location: region:833707-835023:-1
so has part: feature:833707-835023:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:833707-835023:-1:exon

AWJ20_2265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SUP45
locus tag: AWJ20_2265
inference: similar to AA sequence:KEGG_Orthology:K03265
note: Polypeptide release factor (eRF1) in translation termination; mutant form acts as a recessive omnipotent suppressor; methylated by Mtq2p-Trm112p in ternary complex eRF1-eRF3-GTP; mutation of methylation site confers resistance to zymocin; has a role in cytokinesis through interaction with Mlc1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 23451152]; GO_component: GO:0005829 - cytosol [Evidence IPI] [PMID 1474892]; GO_component: GO:0018444 - translation release factor complex [Evidence IDA] [PMID 7556078]; GO_function: GO:0003747 - translation release factor activity [Evidence IDA] [PMID 20947765]; GO_function: GO:0016149 - translation release factor activity, codon specific [Evidence IEA]; GO_function: GO:0016149 - translation release factor activity, codon specific [Evidence IMP,ISS] [PMID 9182990]; GO_process: GO:0006353 - DNA-templated transcription, termination [Evidence IMP] [PMID 23109428]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006415 - translational termination [Evidence IEA]; GO_process: GO:0006415 - translational termination [Evidence IGI,IMP] [PMID 18724935]; GO_process: GO:0006415 - translational termination [Evidence IDA] [PMID 20947765]; GO_process: GO:0006415 - translational termination [Evidence IMP,ISS] [PMID 9182990]
codon start: 1
product: translation termination factor eRF1
translation: MAPAQEETDAEKNIQIWKVKKLIKNLEQARGNGTSMISLIIPPKGQIPLTARMLADEYGTASNIKSRVNRLSVLSAITSTQQRLKLYNKVPPNGLVIYCGEIITEEGKERKVNIDFEPFKPINTSLYLCDNKFHTEALSELLESDSKFGFIVMDGNGALFGTLSGNTREILHKFTVDLPKKHGRGGQSALRFARLRDEKRHNYVRKVAEVAVQNFITADKVNVTGLVLAGSADFKTELSQSDLFDNRLQAKVIKIVDVSYGGENGFNQAIELSAETLSNVKFIQEKKLINAYFDEISQDSGKFCYGVDDTLKALDMGACETVIVFENLNIMRLTLKSADGESTVVVHAAKDAPNKDHLLDKAGNELEVVEEKPLLEWLAENYQSFGATLEFVTDRSSEGAQFVRGFGGIGAILRYKVNFEQLVDESDDEYFDDDDDYI
SIO_010081: AWJ20_2265
subclass of: SO_0000673
so part of: AWJ20_2265
location: complement(833707..835023)
location: region:833707-835023:-1
so has part: feature:833707-835023:-1:exon

XP_018737137.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:833707-835023:-1:exon

AWJ20_2266
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: STE24
locus tag: AWJ20_2266
so part of: sequence
location: complement(<835905..>837179)
location: region:835905-837179:-1
so has part: feature:835905-837179:-1:exon
subclass of: SO_0000010

30034158
type: Gene
SIO_000068: ncbigene

position:835905:-1
position: 835905
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:837179:-1
position: 837179
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:835905-837179:-1:exon

AWJ20_2266
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: STE24
locus tag: AWJ20_2266
product: Ste24p
transcript id: XM_018879200.1
SIO_010081: AWJ20_2266
subclass of: SO_0000673
so part of: AWJ20_2266
location: complement(<835905..>837179)
location: region:835905-837179:-1
so has part: feature:835905-837179:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:835905-837179:-1:exon

AWJ20_2266
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: STE24
locus tag: AWJ20_2266
inference: similar to AA sequence:KEGG_Orthology:K06013
note: Highly conserved zinc metalloprotease; functions in two steps of a-factor maturation, C-terminal CAAX proteolysis and the first step of N-terminal proteolytic processing; contains multiple transmembrane spans; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 11581258]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005637 - nuclear inner membrane [Evidence IMP] [PMID 18923140]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IDA] [PMID 11581258]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IMP,ISS] [PMID 9065405]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0071586 - CAAX-box protein processing [Evidence IMP] [PMID 9065405]; GO_process: GO:0007323 - peptide pheromone maturation [Evidence IDA] [PMID 11581258]; GO_process: GO:0007323 - peptide pheromone maturation [Evidence IMP] [PMID 9065405]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0019236 - response to pheromone [Evidence IEA]
codon start: 1
product: Ste24p
translation: MGFTAGQYLFTTYLSYRQYQVLKKPSPPKELDNVITQETFKKTQEYGRAKAKFGFFTSFFSFVQNVAILKYDLLPKMFGLAGKFLAAYGHSKWFSGLTAQSIVFLLGFQFVETIISLPLSLYSDFVIEERFGFNKQTIGLFFTDLVKSEILKIVIGAPLIAAILKIIDYFGDQFFFYLWLFMVGFQVVAIAVFPTLIQPLFNKLSPLEDGELKTSVENLAKRVQFPLNKLYVIDGSKRSSHSNAYFYGLPWSKQIVIFDTLIEKSTVDEVTAVLAHEIGHWALSHTTKMLLVAQAHLFAIFALFSAFIRNQSLYNSFGFFSSSSQYPILVGFILFGDILQPLESLLSFAMNLMSRSFEFQADDYAVNLNYGPELSKSLIGIHTENLSNVDADWLYSSYHHSHPILPERLKALRLATEAIQKKKH
SIO_010081: AWJ20_2266
subclass of: SO_0000673
so part of: AWJ20_2266
location: complement(835905..837179)
location: region:835905-837179:-1
so has part: feature:835905-837179:-1:exon

XP_018737138.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:835905-837179:-1:exon

AWJ20_2267
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MUP1
locus tag: AWJ20_2267
so part of: sequence
location: complement(<838466..>840064)
location: region:838466-840064:-1
so has part: feature:838466-840064:-1:exon
subclass of: SO_0000010

30034159
type: Gene
SIO_000068: ncbigene

position:838466:-1
position: 838466
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:840064:-1
position: 840064
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:838466-840064:-1:exon

AWJ20_2267
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MUP1
locus tag: AWJ20_2267
product: Mup1p
transcript id: XM_018879201.1
SIO_010081: AWJ20_2267
subclass of: SO_0000673
so part of: AWJ20_2267
location: complement(<838466..>840064)
location: region:838466-840064:-1
so has part: feature:838466-840064:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:838466-840064:-1:exon

AWJ20_2267
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MUP1
locus tag: AWJ20_2267
note: High affinity methionine permease; integral membrane protein with 13 putative membrane-spanning regions; also involved in cysteine uptake; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence ISS] [PMID 8893857]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0000102 - L-methionine secondary active transmembrane transporter activity [Evidence IDA] [PMID 8893857]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0042883 - cysteine transport [Evidence IDA] [PMID 11330701]; GO_process: GO:0044690 - methionine import [Evidence IGI,IMP] [PMID 8893857]; GO_process: GO:0015821 - methionine transport [Evidence IDA] [PMID 11330701]; GO_process: GO:0000101 - sulfur amino acid transport [Evidence IMP] [PMID 8893857]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Mup1p
translation: MAFWESDKNSSTQVAKSDYESQKSSSPDSEIVVQEGGIQVIAPETSRSIGVVSATFLIFNRMIGTGIFATPGTIFGQCGSVGLTLFIWVVGALISAAGLMVYLEWGSMIPKNGAEKAYLEYFYRKPRLLMTSLYGSYMFFMAWAASNSIVCGQYLLLAGGVEPDRWNQRGVGLGCITFAFLVHGLALKWGLRIQNVLGIFKLIVIVIIVVIGWVAMSGRLNIERTHAFHNAFENTNADAYGIVNALYNVMWSFIGYSNANYALAETKNPHRILKIAAPLAITIVTILYMFVNLAYFAVVPRDQILNSGTILAGNFFGIVWGKRGETAMSVFVALSALGNVMAVIFSQGRIVQELGREGSLPFSRFFASSRPLNSPLAGLFEHWLICVIIILAVPPGDAYNFLVNLISYPYSIVNAFVALALIVIYINKKRYPEWNPPIKASLPVTVFFFLSSVYLIAAPYVPPRSAADSVYKSLPYYLHCVVAWGIFAVGGIYWLVWARIIPRIRGYTLDFEEYVDDDGWAKKKVVKIYKSD
SIO_010081: AWJ20_2267
subclass of: SO_0000673
so part of: AWJ20_2267
location: complement(838466..840064)
location: region:838466-840064:-1
so has part: feature:838466-840064:-1:exon

XP_018737139.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:838466-840064:-1:exon

AWJ20_2268
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2268
so part of: sequence
location: <842283..>843428
location: region:842283-843428:1
so has part: feature:842283-843428:1:exon
subclass of: SO_0000010

30034160
type: Gene
SIO_000068: ncbigene

position:842283:1
position: 842283
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:843428:1
position: 843428
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:842283-843428:1:exon

AWJ20_2268
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2268
product: hypothetical protein
transcript id: XM_018879202.1
SIO_010081: AWJ20_2268
subclass of: SO_0000673
so part of: AWJ20_2268
location: <842283..>843428
location: region:842283-843428:1
so has part: feature:842283-843428:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:842283-843428:1:exon

AWJ20_2268
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2268
inference: similar to AA sequence:KEGG_Orthology:K01078
codon start: 1
product: hypothetical protein
translation: MLKLISLLIGFIAAVSGTPLFGILANPFAPKFSTIQPSNPEITTAAACAPTSNYKDIEYVCGNVFDRIYIIFLENADYMKAVEDCHLKKLQKKGITLCNYWALTHTSEPNYIAAVGGDYYGLDTDDFVRLPERVFSIVDLLEYRNISWAEYQEHMPFTGYQGFEYKNQCNGANDYVRKHNPLIMYDSVTNNARRLSNIKNFTELYSDVANRALPQWAFITCNMSNGGHDTTVAKAGEWAYNFLDQLLVDEYCFHKTLLVLTFDEVDRNPKNRVLALLLGDIPCDLQNTVDETYYDHYSLLSSVEANWDLPNLGRGDCGANTFEVIARTTGYKNKQVDTRFKFNALSPPGWLAESFISIPPPDLNGQGAGGPILPEIARVWQ
SIO_010081: AWJ20_2268
subclass of: SO_0000673
so part of: AWJ20_2268
location: 842283..843428
location: region:842283-843428:1
so has part: feature:842283-843428:1:exon

XP_018737140.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:842283-843428:1:exon

AWJ20_2269
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SDS3
locus tag: AWJ20_2269
so part of: sequence
location: <847646..>849001
location: region:847646-849001:1
so has part: feature:847646-849001:1:exon
subclass of: SO_0000010

30034161
type: Gene
SIO_000068: ncbigene

position:847646:1
position: 847646
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:849001:1
position: 849001
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:847646-849001:1:exon

AWJ20_2269
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SDS3
locus tag: AWJ20_2269
product: Sds3p
transcript id: XM_018879203.1
SIO_010081: AWJ20_2269
subclass of: SO_0000673
so part of: AWJ20_2269
location: <847646..>849001
location: region:847646-849001:1
so has part: feature:847646-849001:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:847646-849001:1:exon

AWJ20_2269
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SDS3
locus tag: AWJ20_2269
note: Component of the Rpd3L histone deacetylase complex; required for its structural integrity and catalytic activity, involved in transcriptional silencing and required for sporulation; relocalizes to the cytosol in response to hypoxia; cells defective in SDS3 display pleiotropic phenotypes; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 16286007]; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 16286008]; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 16314178]; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0070210 - Rpd3L-Expanded complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0004407 - histone deacetylase activity [Evidence IMP] [PMID 11024051]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006342 - chromatin silencing [Evidence IGI,IMP] [PMID 11024051]; GO_process: GO:0016575 - histone deacetylation [Evidence IMP,IPI] [PMID 11024051]; GO_process: GO:0016575 - histone deacetylation [Evidence IMP] [PMID 16314178]; GO_process: GO:0061188 - negative regulation of chromatin silencing at rDNA [Evidence IMP] [PMID 16286008]; GO_process: GO:0061186 - negative regulation of chromatin silencing at silent mating-type cassette [Evidence IMP] [PMID 16286008]; GO_process: GO:0031939 - negative regulation of chromatin silencing at telomere [Evidence IMP] [PMID 16286008]; GO_process: GO:0031939 - negative regulation of chromatin silencing at telomere [Evidence IMP] [PMID 19372273]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 17210643]; GO_process: GO:0061408 - positive regulation of transcription from RNA polymerase II promoter in response to heat stress [Evidence IMP] [PMID 20398213]; GO_process: …
codon start: 1
product: Sds3p
translation: MDGTGRMAYAGDIHDQTGYGGGVVHGQYTHGQISGYGPGSAAAASVMAGGIGGVGVGVSGGIGAGGVGTGTGAGAGGGGAQPASKRDKRRQTLAAKLDQITDMFENERDFHYSEMLRTLQSTLYSLHVGDNPEFLEELTDLEEVRDEQLVMLYLWEKYQIERADHEYNQDVELANEEHRQMTDMVKEKLMAKLESQRRKLSEDKTLLDIANDHSFFLSSSGLYHSERNSAKDVNSDYGGGSSTAGAFLYPPGSPSGRDFRDGGGMSTRAAAGSGSAAAAAIGAGGGGSGGTGYGIGGYGGTGLNGHVNGLGAGGEGFSSQSGMERRALRRRGGAAYDDSGLSGGEGSGGAGGTGTGGATSTRRRGAYHGTLNGSGAANTNGYRTNNGGSDMETAAAFSDRDLEGMLFSKDREAPTTRHSSKAYHGVRVLKPEEAQEDIDLLRASIRRAKRP
SIO_010081: AWJ20_2269
subclass of: SO_0000673
so part of: AWJ20_2269
location: 847646..849001
location: region:847646-849001:1
so has part: feature:847646-849001:1:exon

XP_018737141.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:847646-849001:1:exon

AWJ20_2270
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: KTR5
locus tag: AWJ20_2270
so part of: sequence
location: <850608..>852578
location: region:850608-852578:1
so has part: feature:850608-852578:1:exon
subclass of: SO_0000010

30034163
type: Gene
SIO_000068: ncbigene

position:850608:1
position: 850608
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:852578:1
position: 852578
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:850608-852578:1:exon

AWJ20_2270
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: KTR5
locus tag: AWJ20_2270
product: Ktr5p
transcript id: XM_018879205.1
SIO_010081: AWJ20_2270
subclass of: SO_0000673
so part of: AWJ20_2270
location: <850608..>852578
location: region:850608-852578:1
so has part: feature:850608-852578:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:850608-852578:1:exon

AWJ20_2270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: KTR5
locus tag: AWJ20_2270
inference: similar to AA sequence:KEGG_Orthology:K03854
note: Putative mannosyltransferase involved in protein glycosylation; member of the KRE2/MNT1 mannosyltransferase family; KTR5 has a paralog, KTR7, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence ISS] [PMID 9090056]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence IEA]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence ISS] [PMID 9090056]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0097502 - mannosylation [Evidence IC] [PMID 9090056]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]
codon start: 1
product: Ktr5p
translation: MVNLLKSLQSRLIYPAPSNTNHFDEDDDGEELFPTITSSAAMTPVNHSQTGEYFPNYPRKSDSSTGSSNNDSGHGLGINSEKARLSSLSDNLSASASSSAGSSPTMTSSPTHSSSSTNLKLLLEKHRSRKQNQPRSHTIRFIYKLSHKIRYLSAIRIRIKHNVSVPLVVFLLPILSVLIFFLIFFLTRILHDNNSNNNNNNGGFFSKSPPKLREISDQYDKPFVVGCLEPQVDQPRANAVLVVLARNSEIEGVSQSMISLERHFNRWFNYPYVFLNDEPFNSTFREAVRNITKSKVQFGTIDPVDWNFPEWAEPEDIKEGIAKQGDAAIMYGGMESYHHMCRFYSGKFYNHPLLASYEWYWRVEPEVKYFCDITYDPFLHMAKNNKVYGFTIIIKELVETVPNLFRHTYGFKQNYGLNTTGLWDLFLTKPEDSDPDFKDANKDSGSVRKRKKQQKKDKAKAKAEENAALSDILPEEAMLLEQGKEKGIQQTLQEEEKLDPYSMNGEKYNMCHFWSNFEIARLDFFRSKQYNDYFETLDRSGGFWNERWGDAPVHSLAAGLFLEPEQIHYFRDIGYRHTTIQHCPANAPQRQRPHIPYIPDPTNKEQIEEDRYWANPDPEVLNGVGCRCRCDTDIVDVEGKDGSCLADWVDLTGGWV
SIO_010081: AWJ20_2270
subclass of: SO_0000673
so part of: AWJ20_2270
location: 850608..852578
location: region:850608-852578:1
so has part: feature:850608-852578:1:exon

XP_018737142.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:850608-852578:1:exon

AWJ20_2271
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RPN4
locus tag: AWJ20_2271
so part of: sequence
location: complement(<853112..>854551)
location: region:853112-854551:-1
so has part: feature:853112-854551:-1:exon
subclass of: SO_0000010

30034164
type: Gene
SIO_000068: ncbigene

position:853112:-1
position: 853112
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:854551:-1
position: 854551
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:853112-854551:-1:exon

AWJ20_2271
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RPN4
locus tag: AWJ20_2271
product: stress-regulated transcription factor RPN4
transcript id: XM_018879206.1
SIO_010081: AWJ20_2271
subclass of: SO_0000673
so part of: AWJ20_2271
location: complement(<853112..>854551)
location: region:853112-854551:-1
so has part: feature:853112-854551:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:853112-854551:-1:exon

AWJ20_2271
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RPN4
locus tag: AWJ20_2271
codon start: 1
product: stress-regulated transcription factor RPN4
translation: MLIFRNTNSTIVLSDSENSKTPDVQMFPSMTSFGRNQTAGPVFAAGPSSGYPTTPFKMSSPYYQAELESQRQQLVLPDSHEFVNDLGSSDEQLRFHALSQLNSNYVPPLSSIAPQSMMKSADEFRYERSMPSLYGQKTEGFDEYFSGGVYINPNERPTMEGGVSDAMDLLDTPEAMDEDDEEEDDDDDEENMFYVEDDDEDLYNDNYYGESAAPGLDHSPYDATNLLISNPVGPSMPLAMRFQPISEPVQEQVGVLTVNPADLTKMPAQSSEGDLTNPTIDSYDEFLGSSSASSPSSLASLQSSFSSSDEDYDSIYEPRRLDKIIPEPLRVESIISHENHNHNLDHSHNHHHQDDGRSFNSHVQPVEREQPHGQPQHIMTSSVSPSELNNVSRHEMTKTRRHSAKKNNDLTPPFRCNLVSSESGKECGKVFSRSYDLIRHKDTIHASVRKTFKCDQCGEASRTFSRMDALTRHMRVKHA
SIO_010081: AWJ20_2271
subclass of: SO_0000673
so part of: AWJ20_2271
location: complement(853112..854551)
location: region:853112-854551:-1
so has part: feature:853112-854551:-1:exon

XP_018737143.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:853112-854551:-1:exon

AWJ20_2272
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RAD3
locus tag: AWJ20_2272
so part of: sequence
location: <857137..>859443
location: region:857137-859443:1
so has part: feature:857137-859443:1:exon
subclass of: SO_0000010

30034165
type: Gene
SIO_000068: ncbigene

position:857137:1
position: 857137
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:859443:1
position: 859443
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:857137-859443:1:exon

AWJ20_2272
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RAD3
locus tag: AWJ20_2272
product: TFIIH/NER complex ATP-dependent 5'-3' DNA helicase subunit RAD3
transcript id: XM_018879207.1
SIO_010081: AWJ20_2272
subclass of: SO_0000673
so part of: AWJ20_2272
location: <857137..>859443
location: region:857137-859443:1
so has part: feature:857137-859443:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:857137-859443:1:exon

AWJ20_2272
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RAD3
locus tag: AWJ20_2272
inference: similar to AA sequence:KEGG_Orthology:K10844
note: 5' to 3' DNA helicase; involved in nucleotide excision repair and transcription; subunit of RNA polII initiation factor TFIIH and of Nucleotide Excision Repair Factor 3 (NEF3); homolog of human XPD protein; mutant has aneuploidy tolerance; protein abundance increases in response to DNA replication stress; GO_component: GO:0000439 - core TFIIH complex [Evidence IDA] [PMID 14500720]; GO_component: GO:0000439 - core TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0005675 - holo TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0000112 - nucleotide-excision repair factor 3 complex [Evidence IDA] [PMID 8855246]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0043141 - ATP-dependent 5'-3' DNA helicase activity [Evidence IDA] [PMID 2827162]; GO_function: GO:0004003 - ATP-dependent DNA helicase activity [Evidence IEA]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0000990 - core RNA polymerase binding transcription factor activity [Evidence IC] [PMID 19818408]; GO_function: GO:0003684 - damaged DNA binding [Evidence IDA] [PMID 8132553]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016817 - hydrolase activity, acting on acid anhydrides [Evidence IEA]; GO_function: GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: G…
codon start: 1
product: TFIIH/NER complex ATP-dependent 5'-3' DNA helicase subunit RAD3
translation: MCDTKKTLDVGGNCILEMPSGTGKTISLLSLTVAYQMHYPEHRKIVYCSRTMTEIEKALEELKNLMAFRAKELGYVEDFRGLGLSSRKNLCLHPSVKRERKGAIVDERCRSMTNGISKSKIEAGDTRAQLCEYHENLYELEPHNLIPPGVYTFEDLLKYCQERRTCPYFTVRRMMSFCNIVIYSYHYLLDPKIAERVSKELSKDCIIIFDEAHNIDNVCIEALSVDITEDSLRRAAHGAASLGRAVDNVKVNDAEKLQNEYQKLVEGLREAEVAREEDLFMSNPVLPDDLLSEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVLHVISETPNSFLKHLKELTYIDKKPLRFCSERLNSLVRTLELTEIEDFTALKEIVTFATLVSTYEKGFILILEPFETEQATVPNPILRFACLDASIAMKPVFDRFSSVIITSGTISPLDMYPRMLNFDTVIQESYTITLARRSFLPIIVTKGSDQVAISTRFQIRNDPSVVRNYGNLLIEFSKLTPDGLVVFFPSYLYMESIISMWQTMGILDEVWKYKLILVETPDGQETALALETYRTACSNGRGAVMFCVARGKVSEGIDFDNQYGRTVLMIGVPFQYTESRILKARLEFLRENFRIKENDFLSFDAMRHAAQCLGRVIRGKEDYGIMVLADRRFAKKRTQLPKWINEAILDADVNMSTDMAVAAAKKFLRTMAQPLDPADQKGVSVWDINDLQAHQQELTGVKGKRIEEVTNKPEHDDQMDVDFDDEGIDDEGIDDSELLNL
SIO_010081: AWJ20_2272
subclass of: SO_0000673
so part of: AWJ20_2272
location: 857137..859443
location: region:857137-859443:1
so has part: feature:857137-859443:1:exon

XP_018737144.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:857137-859443:1:exon

AWJ20_2273
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: AMD2
locus tag: AWJ20_2273
so part of: sequence
location: <860935..>862557
location: region:860935-862557:1
so has part: feature:860935-862557:1:exon
subclass of: SO_0000010

30034166
type: Gene
SIO_000068: ncbigene

position:860935:1
position: 860935
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:862557:1
position: 862557
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:860935-862557:1:exon

AWJ20_2273
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: AMD2
locus tag: AWJ20_2273
product: Amd2p
transcript id: XM_018879208.1
SIO_010081: AWJ20_2273
subclass of: SO_0000673
so part of: AWJ20_2273
location: <860935..>862557
location: region:860935-862557:1
so has part: feature:860935-862557:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:860935-862557:1:exon

AWJ20_2273
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: AMD2
locus tag: AWJ20_2273
inference: similar to AA sequence:KEGG_Orthology:K01426
note: Putative amidase; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004040 - amidase activity [Evidence IEA]; GO_function: GO:0004040 - amidase activity [Evidence ISS] [PMID 2263500]; GO_function: GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA,IEA]
codon start: 1
product: Amd2p
translation: MTVSEISLEKLIDEARKRRESQLPDKYRLKKDQLPHHSVKDITGFFQQSGLFTKHELTITESPVEIILKAIKDQDWTSVEVAEAFCKRAAYTHQITNCLTEMFFDRAVERAKYLDDYYAQHGKLFGPLHGLPVSIKDHHQIKGTTVTIGFTAWSTTVSSEDSAIITMLYELGAVLYCKTTVPVAMMMPDTESHLFGRTLNPNNLDHSPGGSSGGEGALLACCGAPIGLGSDIGGSIRLPAHSNGIYGLKPTASRFPIAGTRSGLRGQHTIKSVVGPLSRSLESLEYFTKLIFNSNPENYDPTANPIPWREPIIPEKLVFGVIRTDNYVEPTPAVKRAVERTVAALESQGHEVIEWEPYMHARMDDILDKTFVADGGKFVKSSRQGEPLFPYMEPYGKVQESGCSLLWELNYERSEIEMEYFKRWQDSGKLSKSGRRMDGIIVPASPVSSHPPHHFSYVGYTSVFNAIDYPAVVYPVLKSDSSIDGKPAHEPLSEKDRKVWEAYNPEEYDNGCVGLQIVCRRHEDEKALALAKVIRDALQQ
SIO_010081: AWJ20_2273
subclass of: SO_0000673
so part of: AWJ20_2273
location: 860935..862557
location: region:860935-862557:1
so has part: feature:860935-862557:1:exon

XP_018737145.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:860935-862557:1:exon

AWJ20_2274
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: HOL1
locus tag: AWJ20_2274
so part of: sequence
location: complement(<862786..>864387)
location: region:862786-864387:-1
so has part: feature:862786-864387:-1:exon
subclass of: SO_0000010

30034167
type: Gene
SIO_000068: ncbigene

position:862786:-1
position: 862786
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:864387:-1
position: 864387
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:862786-864387:-1:exon

AWJ20_2274
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: HOL1
locus tag: AWJ20_2274
product: Hol1p
transcript id: XM_018879209.1
SIO_010081: AWJ20_2274
subclass of: SO_0000673
so part of: AWJ20_2274
location: complement(<862786..>864387)
location: region:862786-864387:-1
so has part: feature:862786-864387:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:862786-864387:-1:exon

AWJ20_2274
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: HOL1
locus tag: AWJ20_2274
note: Putative transporter in the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; mutations in membrane-spanning domains permit cation and histidinol uptake; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 8955402]; GO_function: GO:0015665 - alcohol transmembrane transporter activity [Evidence IMP] [PMID 2405251]; GO_function: GO:0022890 - inorganic cation transmembrane transporter activity [Evidence IMP] [PMID 8955402]; GO_process: GO:0006812 - cation transport [Evidence IMP] [PMID 8955402]; GO_process: GO:0015850 - organic hydroxy compound transport [Evidence IMP] [PMID 2405251]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Hol1p
translation: MSKSDNIATENSLEVQSSWDAVPGTLNWENKSSNGDLILYPQPSNDPDDPLNWTKIRKIVNLSLVLFYTFTTGIAGTSTYSILVPISEATGITIAQLNNGTGYLFLLAGWTNLIWQPMALTFGRRPVFLFSILGCVAMSEWAAHISSYGAWAACRCLLGAFVAPVEVLPEQCIAELFFSHERSAWMGIYMLVLASSNYLAPLIAGYMNESIGWQWVQHWCALLLALNFILAFFFYEDTMFNRTTKEAEHVEGSDEDKYGHMITVNSPRNLDYSHKMNYLQKMKLWRVNPLVTKRGFFDMVWRPVYFFFRFPIVAWAGVFYGFGLVWYNVFNATSSAILSAPPYNFSSDGVGLSYLAPLIGAIIGGLYCWSIVNYYAISLARKNNGIREPEQRLWGLVLYNILLPSGLILWGVGAAHEVHWIGLLFGAAFVSICNVLAGSFSLSYLIDCYKDISGEALVSVILCRNTLSFGINYAITPWINHSGLQNTFIVAAVLGLVTGLTFLIMIFGGKALRKKGASAYIKAAETQIIHVAH
SIO_010081: AWJ20_2274
subclass of: SO_0000673
so part of: AWJ20_2274
location: complement(862786..864387)
location: region:862786-864387:-1
so has part: feature:862786-864387:-1:exon

XP_018737146.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:862786-864387:-1:exon

AWJ20_2275
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2275
so part of: sequence
location: <867187..>867699
location: region:867187-867699:1
so has part: feature:867187-867699:1:exon
subclass of: SO_0000010

30034168
type: Gene
SIO_000068: ncbigene

position:867187:1
position: 867187
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:867699:1
position: 867699
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:867187-867699:1:exon

AWJ20_2275
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2275
product: hypothetical protein
transcript id: XM_018879210.1
SIO_010081: AWJ20_2275
subclass of: SO_0000673
so part of: AWJ20_2275
location: <867187..>867699
location: region:867187-867699:1
so has part: feature:867187-867699:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:867187-867699:1:exon

AWJ20_2275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2275
inference: similar to AA sequence:KEGG_Orthology:K03952
codon start: 1
product: hypothetical protein
translation: MSTTREPNSDYAAYVDQTPMPSHIPDVPEIGATSAPLKSASFFIGARCLPYNDDYIMCKQESKGNGELDCLKEGRRVTRCAISVLEDINKHCLEEFRLHWQCLEQNNQQFWGCRPAERLLNKCVFEKLQLEKKIPQVSSDNQIHLKKNPLLKPNTEDYASVAAAKRGGVL
SIO_010081: AWJ20_2275
subclass of: SO_0000673
so part of: AWJ20_2275
location: 867187..867699
location: region:867187-867699:1
so has part: feature:867187-867699:1:exon

XP_018737147.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:867187-867699:1:exon

AWJ20_2276
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CTF4
locus tag: AWJ20_2276
so part of: sequence
location: complement(<867921..>870398)
location: region:867921-870398:-1
so has part: feature:867921-870398:-1:exon
subclass of: SO_0000010

30034169
type: Gene
SIO_000068: ncbigene

position:867921:-1
position: 867921
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:870398:-1
position: 870398
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:867921-870398:-1:exon

AWJ20_2276
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CTF4
locus tag: AWJ20_2276
product: chromatin-binding protein CTF4
transcript id: XM_018879211.1
SIO_010081: AWJ20_2276
subclass of: SO_0000673
so part of: AWJ20_2276
location: complement(<867921..>870398)
location: region:867921-870398:-1
so has part: feature:867921-870398:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:867921-870398:-1:exon

AWJ20_2276
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CTF4
locus tag: AWJ20_2276
inference: similar to AA sequence:KEGG_Orthology:K11274
codon start: 1
product: chromatin-binding protein CTF4
translation: MKIKLNPRQAHTAGIVRVCYSLDGNYLISGGANDLVRKFTTGSDSSEPDSLDHHHDAVLAVDVSDAHFASSSEDGTVHLFDVVSNKPKGVIVRNPLAIREVKFSPDGKWIATSGNDKFVKIISVTDILKVQEMSLPVPVKHISYSISGNLIALSSIDGNLRFYRLEKSENKDGSDEPDGDMENSFRQNTIIPPFNPTLVHSLEGIVPDVRDVDDVRTTAVEFHPDGTHFAIATKTFEVGVYNLSNVSEVARLRHTNGHKKELTGIKWSPNGKYIATISLDNKVIIWDATTFTPVESQNVESPISVAWHPTTNELTVATDRGQLITYDVLLDQASPFGDITPFNTTTSTNGTDSSTKKSVNSVDRIRDYDDYDLELEFTGDATADDVEQANGEGNELDWIEDDDGAGYVGEENGKRSRESTALENGNGYKRAKFVSTEPVHEPFITGSTPWKNGRRYLCMNTIGYIWSVFQEDHNTVTVTFFDRGLHREYHFTDYVQYDLACLTEEAALFANTKTRKALLRFHDGFTNNWEYTLSDNDLFRCISLSKNIVTFCTAQGYVRTFNIYGSPLSVYRQSRDPVITCASWRNYNYIVRTSPTGSLSYSIENVRTNVIYQKNDEIDIGVGNKLKAVFFTSQGDPCIFDSKGILLVLQNWREPLQTRWVPIVDSNIESAQGRKESYWPIGVIDNKFVCTVLRKGDQHPNIPLPATTELELSVTVDPTTTDYEKEYLTKQVLLQLSRAQAESDDNIELVSTVSSQELEVDKVVLRLIQACCIDSKPSKALALAYLINKDQALEAASKIALRFDQSAVAEKINELLNARLRQQQQ
SIO_010081: AWJ20_2276
subclass of: SO_0000673
so part of: AWJ20_2276
location: complement(867921..870398)
location: region:867921-870398:-1
so has part: feature:867921-870398:-1:exon

XP_018737148.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:867921-870398:-1:exon

AWJ20_2277
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2277
so part of: sequence
location: <870960..>871739
location: region:870960-871739:1
so has part: feature:870960-871739:1:exon
subclass of: SO_0000010

30034170
type: Gene
SIO_000068: ncbigene

position:870960:1
position: 870960
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:871739:1
position: 871739
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:870960-871739:1:exon

AWJ20_2277
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2277
product: hypothetical protein
transcript id: XM_018879212.1
SIO_010081: AWJ20_2277
subclass of: SO_0000673
so part of: AWJ20_2277
location: <870960..>871739
location: region:870960-871739:1
so has part: feature:870960-871739:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:870960-871739:1:exon

AWJ20_2277
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2277
codon start: 1
product: hypothetical protein
translation: MEHYFDDEDELPSIVQISRKDFSEDEFVVDEFLTKFHKYQTLEDLENQLKSWDKELGHELIDVINKDYGDFVGLGNSLSGGENKIQDVKMNLLRFQTETKKVKTELENVVEKTNKLIQDKKDLVWLQDFSREMILYLKKLEDIEKSVHDKTESDLEQISEFAKQYIHLKLLARDLGVKAVQRDALTESRANKLKHSGTHNDDNVNHSIPPILEQKRPRLARVKSTIIELVDTSIKKKSGTGEEQLRLAILKAKLLETYD
SIO_010081: AWJ20_2277
subclass of: SO_0000673
so part of: AWJ20_2277
location: 870960..871739
location: region:870960-871739:1
so has part: feature:870960-871739:1:exon

XP_018737149.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:870960-871739:1:exon

AWJ20_2278
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2278
so part of: sequence
location: complement(<871938..>873827)
location: region:871938-873827:-1
so has part: feature:871938-873827:-1:exon
subclass of: SO_0000010

30034171
type: Gene
SIO_000068: ncbigene

position:871938:-1
position: 871938
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:873827:-1
position: 873827
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:871938-873827:-1:exon

AWJ20_2278
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2278
product: hypothetical protein
transcript id: XM_018879213.1
SIO_010081: AWJ20_2278
subclass of: SO_0000673
so part of: AWJ20_2278
location: complement(<871938..>873827)
location: region:871938-873827:-1
so has part: feature:871938-873827:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:871938-873827:-1:exon

AWJ20_2278
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2278
codon start: 1
product: hypothetical protein
translation: MSISRVVSCIITVILLLVAGVAGDDPQATSEPAPALASATAATSSETGDPQPVGDVNATGLVVPTNQTSNLLPNFVLEVKTANSGLVLSTELSAMTPLNGTVSSTNGLSDLCSGELTLMNSTTNLNYNMIPLLSCDDADLVAGYLVNVEGSNSPCAVLYSLHSQGCEFDSTSTFETQLGTVFSITSAQYSASIISQINRTMGPITASISSKASENNPGNGSPLTSKSTGSTVAMAVLYSITGVVAATFLFIIVSGAIRVHKHPERYGLVSNTTSYDSNHGPGGEGFGSMQYSRRAKGLARAVLDSIPIVQFKVGNDASGRTTASPKEESIGIDDNIGRQYAVDGEKQGRDSYSLDNLKAGNESMVETTNESIDELYTPGKNVVEPPTQTESLPTGPEGAVGTSAVADVSREPVAAKAVPPVSQSVSEVGTETPAASHVNGTQPMETLVGGLNSDEPDCPICFESFKDGDILRILPCKHRFHALCVDPWLLNSSALCPLCRVDLSLEENEQVSNDPPNGLNASSHHEVEISLFNRLLDIWNAQLLPREARRVALARFHEEAELRRQLRSRQGNNFEEQNSRRWTNFVNSRRRLFQLRRNRRGASDHEEPAHDNDNNPTSDPSAPPPSSQT
SIO_010081: AWJ20_2278
subclass of: SO_0000673
so part of: AWJ20_2278
location: complement(871938..873827)
location: region:871938-873827:-1
so has part: feature:871938-873827:-1:exon

XP_018737150.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:871938-873827:-1:exon

AWJ20_2279
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2279
so part of: sequence
location: complement(<875950..>877872)
location: region:875950-877872:-1
so has part: feature:875950-877872:-1:exon
subclass of: SO_0000010

30034172
type: Gene
SIO_000068: ncbigene

position:875950:-1
position: 875950
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:877872:-1
position: 877872
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:875950-877872:-1:exon

AWJ20_2279
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2279
product: hypothetical protein
transcript id: XM_018879214.1
SIO_010081: AWJ20_2279
subclass of: SO_0000673
so part of: AWJ20_2279
location: complement(<875950..>877872)
location: region:875950-877872:-1
so has part: feature:875950-877872:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:875950-877872:-1:exon

AWJ20_2279
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2279
codon start: 1
product: hypothetical protein
translation: MSNSLPASTSDTSSHPVSISDLQDITSSVPIMTPPSSRKSTSTPSDPIDKYISAKFKKRTSSIVEWLNKTTSKLGGKYVLVVVAPDDGTDIYFNSPMAKFVDNFLLEKDIVEYLSKGSDGDIDPDRPRVPSIATSTKPNTSTKCKAKLDLCNHDRVISFLTQGLVIIQQATCKALAKSWIREIEPKKQTNYPYKLGDMSKPDWWPYGVRHKEPDHLNKDERVQLLVGLLTHEDISIRRIREAAMPSIRDTDPDKLALLEELYIVADSEKQFLNGNLDESDQIVEVTDLNYWDRQTKIAIPSSNPTTTVKKEKESGSQLKSSSGLGQGRLVNIAPKSTSRAVISSPSIAHLKFDAHQHFAAVTSDSNTSISSPRGHSNGANNSSSLRIASLSSTPSSSLSTTTCSSSSSVGSNSTSSSGSSLSTSASSVSNSSFSANSGLSSSFCSNPIQSPNSSNSNLSYTSKGTPLTAAHYLSQFDTWPGATPLSIPVAGITNRMMFLEHASIPSSSPFHDVNISHGFYMANRTPHKPIRTFANQELDETPSRTTSGQKFDDIGTSSSSIEHTPNPFNQLPLQQLPLPFPLPLQIQSENLNVLGKRPMADRFIYLDDDNTHDENRFNKKFDNGNTKVFYQEETVLKFES
SIO_010081: AWJ20_2279
subclass of: SO_0000673
so part of: AWJ20_2279
location: complement(875950..877872)
location: region:875950-877872:-1
so has part: feature:875950-877872:-1:exon

XP_018737151.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:875950-877872:-1:exon

AWJ20_2280
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TMT1
locus tag: AWJ20_2280
so part of: sequence
location: <880201..>881082
location: region:880201-881082:1
so has part: feature:880201-881082:1:exon
subclass of: SO_0000010

30034174
type: Gene
SIO_000068: ncbigene

position:880201:1
position: 880201
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:881082:1
position: 881082
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:880201-881082:1:exon

AWJ20_2280
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TMT1
locus tag: AWJ20_2280
product: Tmt1p
transcript id: XM_018879216.1
SIO_010081: AWJ20_2280
subclass of: SO_0000673
so part of: AWJ20_2280
location: <880201..>881082
location: region:880201-881082:1
so has part: feature:880201-881082:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:880201-881082:1:exon

AWJ20_2280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TMT1
locus tag: AWJ20_2280
note: Trans-aconitate methyltransferase; cytosolic enzyme that catalyzes the methyl esterification of 3-isopropylmalate, an intermediate of the leucine biosynthetic pathway, and trans-aconitate, which inhibits the citric acid cycle; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11695919]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0046547 - trans-aconitate 3-methyltransferase activity [Evidence IEA]; GO_function: GO:0046547 - trans-aconitate 3-methyltransferase activity [Evidence IDA] [PMID 11695919]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0032259 - methylation [Evidence IEA]
codon start: 1
product: Tmt1p
translation: MTTFAKATFNAASYLSARPHYPDSLFKHIFSYFQKHNSAIKGTPTKCVDIGCGPGEATLKLSEYFDSAIGIDPGAGMIESATKSARSAGKSSDQLNYIIGSDKTFTDIIPESSVNIVTAAQASHWFDFPKFIESSAKVLKPNGVLAVWGYVDHVFVNHPKASEISLEYSYDKKYMGPYWEQPGRGRLASMLSEAEGQLRANDKFSDVEVIRDESITLNPGSFYEMTRTLPLRSVHAYMKTFSAYHEWKAQHPDEPDVVDLCFEAIKKAENWTDDTEVTIKWATVLIMASKKAL
SIO_010081: AWJ20_2280
subclass of: SO_0000673
so part of: AWJ20_2280
location: 880201..881082
location: region:880201-881082:1
so has part: feature:880201-881082:1:exon

XP_018737152.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:880201-881082:1:exon

AWJ20_2281
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: HST2
locus tag: AWJ20_2281
so part of: sequence
location: complement(<881240..>882298)
location: region:881240-882298:-1
so has part: feature:881240-882298:-1:exon
subclass of: SO_0000010

30034175
type: Gene
SIO_000068: ncbigene

position:881240:-1
position: 881240
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:882298:-1
position: 882298
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:881240-882298:-1:exon

AWJ20_2281
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: HST2
locus tag: AWJ20_2281
product: histone deacetylase HST2
transcript id: XM_018879217.1
SIO_010081: AWJ20_2281
subclass of: SO_0000673
so part of: AWJ20_2281
location: complement(<881240..>882298)
location: region:881240-882298:-1
so has part: feature:881240-882298:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:881240-882298:-1:exon

AWJ20_2281
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: HST2
locus tag: AWJ20_2281
inference: similar to AA sequence:KEGG_Orthology:K11121
note: Cytoplasmic NAD(+)-dependent protein deacetylase; member of the silencing information regulator 2 (Sir2) family of NAD(+)-dependent protein deacetylases; modulates nucleolar (rDNA) and telomeric silencing; possesses NAD(+)-dependent histone deacetylase activity in vitro; contains a nuclear export signal (NES); function regulated by its nuclear export; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11226170]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 17110954]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0070403 - NAD+ binding [Evidence IEA]; GO_function: GO:0017136 - NAD-dependent histone deacetylase activity [Evidence IDA] [PMID 10811920]; GO_function: GO:0017136 - NAD-dependent histone deacetylase activity [Evidence IMP] [PMID 10841563]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0000183 - chromatin silencing at rDNA [Evidence IMP] [PMID 11226170]; GO_process: GO:0000183 - chromatin silencing at rDNA [Evidence IMP] [PMID 16051752]; GO_process: GO:0001300 - chronological cell aging [Evidence IGI,IMP] [PMID 16051752]; GO_process: GO:0031939 - negative regulation of chromatin silencing at telomere [Evidence IMP] [PMID 11226170]; GO_process: GO:0045950 - negative regulation of mitotic recombination [Evidence IGI,IMP] [PMID 16051752]; GO_process: GO:0006476 - protein deacetylation [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]
codon start: 1
product: histone deacetylase HST2
translation: MSEEDTQLKPTLESVAEQLKEGKFKNVIFMVGAGISTSAGIPDFRTPGTGLYSNLQRLNLPYPEAVFDISYLRRNPLAFYTLASELYPGKFEPTDFHKFMRTVDRKGLLRRLYTQNIDTLERIAGVSGEKIIEAHGSFAKNHCIDCKTEMSNEELKRIVWESNPGKTTIPKCKKCRGIVKPDIVFFGEGLPRAFFDSMDEDFPESADLVIVAGTSLTVSPFSQLPEMVDDDCIRILFNMDAVGDLGTRDNDLLILGDCDKNVRKFAELCGWSLDEESEEETSEQEIDDSSKETKKQAKEDAEEEAEEMRKEEGREKAELIAEEISKTLEELDLEEKDANSEKVVEKESDAAE
SIO_010081: AWJ20_2281
subclass of: SO_0000673
so part of: AWJ20_2281
location: complement(881240..882298)
location: region:881240-882298:-1
so has part: feature:881240-882298:-1:exon

XP_018737153.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:881240-882298:-1:exon

AWJ20_2282
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TAE2
locus tag: AWJ20_2282
so part of: sequence
location: <883327..>886815
location: region:883327-886815:1
so has part: feature:883327-886815:1:exon
subclass of: SO_0000010

30034176
type: Gene
SIO_000068: ncbigene

position:883327:1
position: 883327
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:886815:1
position: 886815
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:883327-886815:1:exon

AWJ20_2282
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TAE2
locus tag: AWJ20_2282
product: Tae2p
transcript id: XM_018879218.1
SIO_010081: AWJ20_2282
subclass of: SO_0000673
so part of: AWJ20_2282
location: <883327..>886815
location: region:883327-886815:1
so has part: feature:883327-886815:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:883327-886815:1:exon

AWJ20_2282
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TAE2
locus tag: AWJ20_2282
note: Component of the ribosome quality control complex (RQC); RQC (Rqc1p-Rkr1p-Tae2p-Cdc48p-Npl4p-Ufd1p) is a ribosome-bound complex required for the degradation of polypeptides arising from stalled translation involved in protein translation; monitors translation stress and signals this to Hsf1p; may interact with ribosomes, based on co-purification experiments; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; GO_component: GO:1990112 - RQC complex [Evidence IDA] [PMID 23178123]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 23222640]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 23479637]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IGI,IMP] [PMID 20691087]; GO_process: GO:1990116 - ribosome-associated ubiquitin-dependent protein catabolic process [Evidence IGI,IMP] [PMID 23479637]; GO_process: GO:0006412 - translation [Evidence IEA]
codon start: 1
product: Tae2p
translation: MRNELESQILNYRLQNIYDLTSSSHLFLLKFAVPDSKKLVIVDPGFRIHLTEFSRSTTQSPSGFVAKLRKHLKTRRLSRISLAPLNRLLVFSFSDDFSYHLVLEFFAGGNMILLDKQFKILSLQRTVSATDTQSRCAVGEIYPLDDYLKDDGSADVSFDVKSVKQWLGGSSNNVPEAIAEDDSQSASTNLLNSDLPKTSTSGPKKKKEAKIALKKLLYIKVPGIAAGIFEKALLDQSIDPDIKDFGPLLSSEAEITRLLTAVKNASEISKSLTSKSSTPGYIVAKKNAQFQQSTSSDSVDESKFSPETSINNSSIEYLYEEFEPFEPRAFSNPDIKVFEIETFNQAVDKYFSTLESTKLSLKISNQEQQAEKRLNAARDEKEKRVKGLVQVQQKSSTLGYALQAYASRVEEAIEAVQGLLQQGMDWVDIENLIKVEQSRGNPVANTIALPLNLLKNKITVILPDPDFEQDLEEDDDDKDTSDSESDSDSDSESESESTAKNVKTKKKAAPTVKVEIDITLSAWANSRKYFEVKKTAVAKQERTLQQADQAYKSAEKKIKRDLKMALEKEKGQQHTLHAIRETYWFEKFYWFLSSDGYLCIGGRDSFQNELLLRRYFKKNDIYVHCDVGGASVVIIKNHIADSREVPPATLTQAGVLSVATSKAWDSKMVTSAWWATRDQIPRLTPEGDIVRSDLIIVTGEGKHFLPPSQLDMGLGFLWMVSEDAAAKYSKRGGKNRRDGETTDVTNENENNSDSDSSEEEFPDTQIDSDEEFPDTQIASDDDLEDENDVAEEDNEEEEANSELEDILKDESKDALSESEQSDQEADPENEAIADSYDKGDAHNGAGPGEAEADADMDVGADADADSSDISRGPDSENRSGTTGKRISAAERRRLRKQKLRSDSNTPEPESSTAPVSSAVSDIEKALSDLQVSKREKEPAAQKPAKVRGKKGKLKKIASKYADQDEEERSRRMELLGTTRGLEKAKAQAEQEKAKRQQQEQARRDRQNRAKEQEKKRLLEAEELGDDDEEVDDDSKYPFDKLVPRLSVGDEPQTIVPVFAPWGALQRYKYKMKFQPGTVKKGKAVKDILYSINNAKVDATASDDDYPWPNEIALVRSLKEPELLLAIGVGRVKISIPGSRQKAVKGGSKGQKGGSKRGKGSKR
SIO_010081: AWJ20_2282
subclass of: SO_0000673
so part of: AWJ20_2282
location: 883327..886815
location: region:883327-886815:1
so has part: feature:883327-886815:1:exon

XP_018737154.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:883327-886815:1:exon

AWJ20_2283
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RET3
locus tag: AWJ20_2283
so part of: sequence
location: complement(<887005..>887598)
location: region:887005-887598:-1
so has part: feature:887005-887598:-1:exon
subclass of: SO_0000010

30034177
type: Gene
SIO_000068: ncbigene

position:887005:-1
position: 887005
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:887598:-1
position: 887598
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:887005-887598:-1:exon

AWJ20_2283
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RET3
locus tag: AWJ20_2283
product: Ret3p
transcript id: XM_018879219.1
SIO_010081: AWJ20_2283
subclass of: SO_0000673
so part of: AWJ20_2283
location: complement(<887005..>887598)
location: region:887005-887598:-1
so has part: feature:887005-887598:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:887005-887598:-1:exon

AWJ20_2283
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RET3
locus tag: AWJ20_2283
note: Zeta subunit of the coatomer complex (COPI); COPI coats Golgi-derived transport vesicles; involved in retrograde transport between Golgi and ER; GO_component: GO:0030126 - COPI vesicle coat [Evidence IMP,ISS] [PMID 8617224]; GO_component: GO:0030663 - COPI-coated vesicle membrane [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IMP] [PMID 8617224]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]
codon start: 1
product: Ret3p
translation: MPSPDISLYSVEAVLILDNDGKRLFAKYYQPPYADSNAAVTDNKLATSVKDQTAFEKGLFAKTNKQNADVILYDSKVIVYKQIVDISLYIVGGMEENEAMLYQVVLGLRDALDILLKHSADKRTVLENYDLVSLAVDETIDSGIILEVDPVIIASRVSKAPTNEPSINNIDLSEQGLLNVYQFARGKLSEKLRQQFQ
SIO_010081: AWJ20_2283
subclass of: SO_0000673
so part of: AWJ20_2283
location: complement(887005..887598)
location: region:887005-887598:-1
so has part: feature:887005-887598:-1:exon

XP_018737155.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:887005-887598:-1:exon

AWJ20_2284
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TAF3
locus tag: AWJ20_2284
so part of: sequence
location: <888608..>889438
location: region:888608-889438:1
so has part: feature:888608-889438:1:exon
subclass of: SO_0000010

30034178
type: Gene
SIO_000068: ncbigene

position:888608:1
position: 888608
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:889438:1
position: 889438
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:888608-889438:1:exon

AWJ20_2284
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TAF3
locus tag: AWJ20_2284
product: Taf3p
transcript id: XM_018879220.1
SIO_010081: AWJ20_2284
subclass of: SO_0000673
so part of: AWJ20_2284
location: <888608..>889438
location: region:888608-889438:1
so has part: feature:888608-889438:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:888608-889438:1:exon

AWJ20_2284
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TAF3
locus tag: AWJ20_2284
inference: similar to AA sequence:KEGG_Orthology:K14650
note: TFIID subunit (47 kDa); involved in promoter binding and RNA polymerase II transcription initiation; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC] [PMID 15448131]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 17660549]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IC] [PMID 10788514]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12138208]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15448131]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]
codon start: 1
product: Taf3p
translation: MSEEFFFSLVRISCAQIFRAAGIERCSPSLLDKASDLLVRHLTALSEKASDNAMLSGRNEVVIQDLALAMEELCVIRPRAILDPYDLDPNSFIGYENFIDWVKGPVPEEARRISRIPRVTPIGQKVENTSSGIISISTDGNTGTTPDGIESKDNSDTRAKSEKPEDTRGIDGETRVGSTSSKAPVAASTATKTTSTEASTTQTNTESEKTAGKVHPHDDEEWLTALMKKRIKVGNENKFKGTVLSIEDGLETNPEVKIVGGPVSLDEFQPKNLSVQ
SIO_010081: AWJ20_2284
subclass of: SO_0000673
so part of: AWJ20_2284
location: 888608..889438
location: region:888608-889438:1
so has part: feature:888608-889438:1:exon

XP_018737156.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:888608-889438:1:exon

AWJ20_2285
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: LRG1
locus tag: AWJ20_2285
so part of: sequence
location: complement(<889769..>890290)
location: region:889769-890290:-1
so has part: feature:889769-890290:-1:exon
subclass of: SO_0000010

30034179
type: Gene
SIO_000068: ncbigene

position:889769:-1
position: 889769
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:890290:-1
position: 890290
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:889769-890290:-1:exon

AWJ20_2285
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: LRG1
locus tag: AWJ20_2285
product: Lrg1p
transcript id: XM_018879221.1
SIO_010081: AWJ20_2285
subclass of: SO_0000673
so part of: AWJ20_2285
location: complement(<889769..>890290)
location: region:889769-890290:-1
so has part: feature:889769-890290:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:889769-890290:-1:exon

AWJ20_2285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: LRG1
locus tag: AWJ20_2285
note: GTPase-activating protein (GAP); contains Rho1p-specific GAP activity, interacting with activated forms of Rho1p; functions along with Sac7p as a negative regulator of the Pkc1p-mediated cell wall integrity signaling pathway; negative regulator of cell wall 1,3-beta-glucan biosynthesis; required for efficient cell fusion; contains a RhoGAP domain and three Lin-11-Isl1-Mec-3 (LIM) domains; GO_component: GO:0005933 - cellular bud [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11447600]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 14562095]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 23613772]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 11447600]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 11447600]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 15514049]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030427 - site of polarized growth [Evidence IDA] [PMID 23613772]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IDA] [PMID 15514049]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0000755 - cytogamy [Evidence IGI,IMP] [PMID 15514049]; GO_process: GO:0035024 - negative regulation of Rho protein signal transduction [Evidence IGI] [PMID 11447600]; GO_process: GO:0035024 - negative regulation of Rho protein signal transduction [Evidence IGI,IMP] [PMID 11713681]; GO_process: GO:0090038 - negat…
codon start: 1
product: Lrg1p
translation: MEVLFYFLNWTASFSHIDEETGSKMDAHNLATVITPNILYIKEGGHEQGDAYFLSIESVNTLIEEQSRFAEVPVEVQVIYRESGLANASADITSKDVISKVEACIKQIGGVDAVVVNNSTSPSSGSTTPQNLEEPHRPLPIRVNTSDIAALPVPGQEASIKRVNKTEMSPVSP
SIO_010081: AWJ20_2285
subclass of: SO_0000673
so part of: AWJ20_2285
location: complement(889769..890290)
location: region:889769-890290:-1
so has part: feature:889769-890290:-1:exon

XP_018737157.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:889769-890290:-1:exon

AWJ20_2286
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: LRG1
locus tag: AWJ20_2286
so part of: sequence
location: complement(<890454..>894704)
location: region:890454-894704:-1
so has part: feature:890454-894704:-1:exon
subclass of: SO_0000010

30034180
type: Gene
SIO_000068: ncbigene

position:890454:-1
position: 890454
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:894704:-1
position: 894704
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:890454-894704:-1:exon

AWJ20_2286
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: LRG1
locus tag: AWJ20_2286
product: Lrg1p
transcript id: XM_018879222.1
SIO_010081: AWJ20_2286
subclass of: SO_0000673
so part of: AWJ20_2286
location: complement(<890454..>894704)
location: region:890454-894704:-1
so has part: feature:890454-894704:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:890454-894704:-1:exon

AWJ20_2286
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: LRG1
locus tag: AWJ20_2286
note: GTPase-activating protein (GAP); contains Rho1p-specific GAP activity, interacting with activated forms of Rho1p; functions along with Sac7p as a negative regulator of the Pkc1p-mediated cell wall integrity signaling pathway; negative regulator of cell wall 1,3-beta-glucan biosynthesis; required for efficient cell fusion; contains a RhoGAP domain and three Lin-11-Isl1-Mec-3 (LIM) domains; GO_component: GO:0005933 - cellular bud [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11447600]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 14562095]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 23613772]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 11447600]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 11447600]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 15514049]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030427 - site of polarized growth [Evidence IDA] [PMID 23613772]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IDA] [PMID 15514049]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0000755 - cytogamy [Evidence IGI,IMP] [PMID 15514049]; GO_process: GO:0035024 - negative regulation of Rho protein signal transduction [Evidence IGI] [PMID 11447600]; GO_process: GO:0035024 - negative regulation of Rho protein signal transduction [Evidence IGI,IMP] [PMID 11713681]; GO_process: GO:0090038 - negat…
codon start: 1
product: Lrg1p
translation: MSTAGREKTKNPHNLFLNLHNSNKEANGRTREHREHRQNPPPTQGQSPQQPHHYQPPVPQQQRSRQQQPQQQIPAPHQRQYHQQLRQFPGQPPLQSTGNNVPGLSLNSPVHMANSGANRVHKQSASISGYYPVAGDGASPVIGLESPNQFKGQGYVSDSSGASFGGSTGSNSPRQFSGIDSPTRSIPMTSPRYRNFSRPNTFYQTESSSLGNDVFSRDPGNQSYFQNLPTPPLGGTNTATETTVSSNSKPTTGSNTRSFSIRKVSQDGGDPSFNEPVERMPPMPGTNAGPQGQSQSNWSSHLQTNPITTTTNTSNTSMPPPATNSTRNFQNNSNNTDHVYDSNEPSSSNNSNNNNHNNGALPDTNSNNRVYTTNSVYGANSSLSALNTSGLPNNNSTSSITSPISPSKPARSKTCRKCGDPISGQFVRALDAAYHIECFTCADCNDQCSSKFFPTDNPDYDPTAPSNVPAHIPLCETCYFKRLDLLCYACNGALRGSYITALGRKYHVDHFTCSMCDTVFGPEDSYYEHGDSIYCHFHYSTLYASKCEGCQTAILKQFVEIYRGGREQQWHPECYMIFKFWNVKLCPEGSKPTLNPLRPLSVTAAAPLDQLNHLQVAQHEKEVDERVYRIWTVLCGYEEATASYISDMLQSASNGKYNEALVATANLVAKVDVLFGALDMLNLVIDPLIKEQEDRRKREDEEDELAVNNTGAHDENVRRPSVTSIPTFTVLGREPKNLCKKIVEFMSMVSKSREKNVKKMGVTLLNLVTSLAHYLKVLIRYGLSNSLLYDRSFPNGNAVDSFLQRVEVHTKSVSVLNNLGVSAMTSDRCVRCESSVEDACVRFGDRLWHVGCFLCDKCGRNLSGEVDTAAWHVSEKMVICQECGGKHNSDESGKLGFVYVTRLRQFVFLVKIAVARLQLVLSAYEARDKKAKRISGTGDSMSTPALAHYKASTSASDRSNQSAGSSSTAVNEPTQNEKGYMTTLTDIRRLRSAKLDRQVSEMSRRARQSRILAMPDSESALVKNNNDSSNSLEGGGSTTMNSPDEHEQQRRPSNYSEDKVLVNERSRPSVSSQQDPFASTATSSTHDASSKSQQQTSEGATATTSGSVTTSTNATSGAGSGAGSNKSLLRNAKRTFSIKRRKELKIEELGYKQDPSRLDRTTDLFKNEKTLTLDDIPRIVAAEQAREQLPNAFRHQARTTSMTNSVPMPKSIADSGAKDETRTYMSELSKSELFYIRHVCVVLLQPLVSEWFSQDELLDLIETRRQQSIWGKFGKAFGGGGGNSNTTAAKKKGTGAVFGTPLEQLVEKYGVDSTLGVGPKPLRIPAFVDDCISSMRQKDMSVEGIFRKNGNIRRLKEFTEKIDKNPDKSSILSEENAIQLAALLKKFLRELPEPLMTSKLQKLWIMTQSKYFPLVP
SIO_010081: AWJ20_2286
subclass of: SO_0000673
so part of: AWJ20_2286
location: complement(890454..894704)
location: region:890454-894704:-1
so has part: feature:890454-894704:-1:exon

XP_018737158.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:890454-894704:-1:exon

AWJ20_2287
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2287
so part of: sequence
location: <897720..>900917
location: region:897720-900917:1
so has part: feature:897720-900917:1:exon
subclass of: SO_0000010

30034181
type: Gene
SIO_000068: ncbigene

position:897720:1
position: 897720
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:900917:1
position: 900917
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:897720-900917:1:exon

AWJ20_2287
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2287
product: Protein BRE4
transcript id: XM_018879223.1
SIO_010081: AWJ20_2287
subclass of: SO_0000673
so part of: AWJ20_2287
location: <897720..>900917
location: region:897720-900917:1
so has part: feature:897720-900917:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:897720-900917:1:exon

AWJ20_2287
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2287
codon start: 1
product: Protein BRE4
translation: MAVLVSSVITNKDSSKPKGVRRSRSSIENSISERTSLLSSVGGTVRIDSGAATTTHDVFAETAASNEDNASSLQRLIKTYEDARQFIFSRKGKNILKCSVAYFIGSLAVYTPIGTWLYGHSDNKHMICTVCVYFHPARTAGSMTEAILFALFALAFGLIIALSSMIVSALFTDWDLIYVGYVIDLLVFVGGGLGVIAFTKQMVNKPTFNTACSLASIFLVTILTKEGNVQAGTLSLSKLLQSFMFVLSGVILSTTISYLVWPESAILKLKESLNKSMDVHSDLLTFIANKFINGQDINTSEFEKLNEELSKTYKSLQTNLHEAKFELLSTGRECEYEVFQRLIQSSNSLSLHLGGLSNSANIQWHLLNGEESDDESQDESTTNGDTDVTAVRHRVNGSARPDGRDSDDSSVTSIEDIISRRSVSPPVSGESSSAIAPDSVSAELFSIFTFHLGPPMISFFSTIKEILDNLPFGNSPNYEVSLHPQYKASLDLATELYSTAREEALAGVYAHEIFQVERDFDTAADEEAIAASCGNFSYVLEDFGWELSVFITALEDYRNIIENRPRRSFKWARFWESRSKTFDNSTSSGTANDNTGPDVDGADTERGTDPANPLRRSPTANTHNVKSFAELDWLIKKSTTEKKQKTSLSLRIWRSMHAFRRTDVQFGIKVGIGAIIFAIPAFSPSLRPIFSTWRGEWGLITYAIVMSKSVGGTTVTIPIRFLGTLLGAAAAFVAWTLFPENQYVLSFLGWVMACLCFYIILFWDTKQAFGRFILLTFNLTVLYSYSLTVYDNDDDDDEGGAHPIVREIAFHRFVSVFVGSLWAVFIAFIILPNSARKRLRDILSVQWLKMGLVWKADCLKTIPRKSAADEPRLVGIQGEADLQSTMVELQTLLGFAPNELRLKGPFPTLQYKNILNCTQRILDGFQNIGVLVAKYPKPSSNELELIAYTAADRRELCSRIFLFFYLISSAIKLGFPLPDKLPSTTHAIDRMLAKMSDYRQRAIAARSDHGDSSTTASKPPPDEEDFVLFYSYLLVTVSITEELAKIAIQVQDLFGTIEEDMFTVS
SIO_010081: AWJ20_2287
subclass of: SO_0000673
so part of: AWJ20_2287
location: 897720..900917
location: region:897720-900917:1
so has part: feature:897720-900917:1:exon

XP_018737159.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:897720-900917:1:exon

AWJ20_2288
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ATG2
locus tag: AWJ20_2288
so part of: sequence
location: <901341..>903587
location: region:901341-903587:1
so has part: feature:901341-903587:1:exon
subclass of: SO_0000010

30034182
type: Gene
SIO_000068: ncbigene

position:901341:1
position: 901341
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:903587:1
position: 903587
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:901341-903587:1:exon

AWJ20_2288
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ATG2
locus tag: AWJ20_2288
product: Atg2p
transcript id: XM_018879224.1
SIO_010081: AWJ20_2288
subclass of: SO_0000673
so part of: AWJ20_2288
location: <901341..>903587
location: region:901341-903587:1
so has part: feature:901341-903587:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:901341-903587:1:exon

AWJ20_2288
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ATG2
locus tag: AWJ20_2288
note: Peripheral membrane protein required for autophagic vesicle formation; also required for vesicle formation during pexophagy and the cytoplasm-to-vaucole targeting (Cvt) pathway; involved in Atg9p cycling between the phagophore assembly site and mitochondria; essential for cell cycle progression from G2/M to G1 under nitrogen starvation; forms cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11382760]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 11382760]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 11689437]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 18497569]; GO_component: GO:0034045 - pre-autophagosomal structure membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 11382761]; GO_process: GO:0000045 - autophagic vacuole assembly [Evidence IMP] [PMID 11382761]; GO_process: GO:0006914 - autophagy [Evidence IEA,IEA]; GO_process: GO:0006914 - autophagy [Evidence IMP] [PMID 23382696]; GO_process: GO:0044805 - late nucleophagy [Evidence IMP] [PMID 22768199]; GO_process: GO:0000422 - mitochondrion degradation [Evidence IMP] [PMID 19793921]; GO_process: GO:0030242 - peroxisome degradation [Evidence IDA,IEP,IMP] [PMID 11382760]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 18701704]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Atg2p
translation: MAPSWLPQNIQKRIFRYILARLEVFSDLDLKNLDVSVGTKTNLTLREVQLDTDKFTLPNGVFVRSGKLGTLNLSIGVGNGVEIDGTDVEFTVALSSSSLDEDDLTDLLSRTTADLAVSLLDDNTREKQHGSSAKDSKKSQDTSDSDSDDSGTGVTGYGFGELPNMVTKVADTALSQLSIMLHGIKLRLIIDEDCSLEIHVSKVQLSTGKDGLRTIRVSEIEILTPKIKDTVENNDDDDILNHETDTERGGEDSFHMDEMQNSLMQSTLFSHEEASTMYMSAMSSMLQSKEQEAQLDRLLWCDFSELSFKGLLRSDFSLNIGTVNISTVPVSHVLSTIVNFVLKFESNTTKAKEDASNGLTHNDHDNGNLIASNEVTDNSQATQFTLKAGVKAVHISMSSLLPDGLFESEESLTFEVSSINLNIDNKQQLLTVSNIILRQGNEPVVWFAKKTGDEDEDLVCHLGNKVTVLLPHPASFYFDTDTIVNISEAIKLFSDLQISQPSQSPSSSLSSLRPKDGKNVTAKFNTIEGQINTGSTTVRATIFPSNFENGKLLIDTVRFSIKHNDSTYKAGSIEVQDISIVFGGQSLALSTAIFSPDLEQIQAPVNTQLHVSTVMIGISQPVLDTLISDLKSIHSLVGSALESRSVAQLRQVRIQESELVKFSVVIAKVEVDYSFQSGEESCVIYTDLGQIELNVLESASTQISIYTVFVTHDFKIKDSSSSYVALLYKANPSEKVCLYVTIARHQRH
SIO_010081: AWJ20_2288
subclass of: SO_0000673
so part of: AWJ20_2288
location: 901341..903587
location: region:901341-903587:1
so has part: feature:901341-903587:1:exon

XP_018737160.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:901341-903587:1:exon

AWJ20_2289
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ATG2
locus tag: AWJ20_2289
so part of: sequence
location: <903791..>906649
location: region:903791-906649:1
so has part: feature:903791-906649:1:exon
subclass of: SO_0000010

30034183
type: Gene
SIO_000068: ncbigene

position:903791:1
position: 903791
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:906649:1
position: 906649
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:903791-906649:1:exon

AWJ20_2289
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ATG2
locus tag: AWJ20_2289
product: Atg2p
transcript id: XM_018879225.1
SIO_010081: AWJ20_2289
subclass of: SO_0000673
so part of: AWJ20_2289
location: <903791..>906649
location: region:903791-906649:1
so has part: feature:903791-906649:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:903791-906649:1:exon

AWJ20_2289
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ATG2
locus tag: AWJ20_2289
inference: similar to AA sequence:KEGG_Orthology:K17906
note: Peripheral membrane protein required for autophagic vesicle formation; also required for vesicle formation during pexophagy and the cytoplasm-to-vaucole targeting (Cvt) pathway; involved in Atg9p cycling between the phagophore assembly site and mitochondria; essential for cell cycle progression from G2/M to G1 under nitrogen starvation; forms cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11382760]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 11382760]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 11689437]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 18497569]; GO_component: GO:0034045 - pre-autophagosomal structure membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 11382761]; GO_process: GO:0000045 - autophagic vacuole assembly [Evidence IMP] [PMID 11382761]; GO_process: GO:0006914 - autophagy [Evidence IEA,IEA]; GO_process: GO:0006914 - autophagy [Evidence IMP] [PMID 23382696]; GO_process: GO:0044805 - late nucleophagy [Evidence IMP] [PMID 22768199]; GO_process: GO:0000422 - mitochondrion degradation [Evidence IMP] [PMID 19793921]; GO_process: GO:0030242 - peroxisome degradation [Evidence IDA,IEP,IMP] [PMID 11382760]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 18701704]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Atg2p
translation: MQLFLRDCVVELNPLDLPSQGLYIIKDSKVDFALGAESTIDLSVKRSALLLVDEVSNLETVGIPAVSGVTEFFLSQGYVSIGSISTLKSVIKIPSNRKPRVDITIDSVTLNTCADSTQVLIQTLNALKPPVEANDGIRFRTELPNLVDIFSEVDETTFMDGYTSSTALSKMGDDVINDDIPSNLEFVESYYVDQSTRLKWNSGSSSGSLNNGVSRADMLLEQDLSVLAGKSKNSSNSNSIEGSISSVSEASPYASSTSSSSSRNGSQSYARLDNFEQRAYTHDSVLNIEEDHFAKDLPSIYEQPTESGSTSPVSTPRRRRSVTATIPTTEKQEPLITIKARILSVDWLLFDGYDWSFTRDTINKAVNRVEYAADQFHREANGRGVSASDRFTPSPRNSGEVGNNEERGRIRNESPEGEVQTVVGDLLFNSIYIGVPAGDDPDMLRGAINRELNDDMSEAGSNASTNITSRSSSANRRSVDLGYRRKKKLALKRSKRYKMKISLRDVCADVIVLGGVNDQVDLSHYSPDTSGIVLNTIDIRVKDLEIFDNVHTSTWNKFLSYMRDAGERESHASMVHILLDTVKPVDYLAVSEIQLKVSVLPLRLIVDQDALDFLTRFFEFKDERFVVAETNEEIFIQKLDVRSVSVKLDYKPKKVDYMGLKSGRTIEFMNFFTLDGADIVLRHVVLYGIDGFGKVSDLLNGIWMPDIKQNQLGKFLSGLSSVHSLVRLGSGVRDLFVIPLQEYKKDGRVVRGLQKGAWFFAKNTTNELAKLGAKLAAGTQGVLESAEQALGGSGASARSLGAAYRSPYSDDIVSDDEEPSSPSTDQQHIVSLYANQPGGVSEGLRSAYKSMGKNLTMARDAVADIGVDAAERGNAQGAAIAVMRAAPVVLIRPMIGATEAVSKTLMGVTNQIEPDQLQDVQDVSIISGLLNESQNSQILTFRNTNDSIQIRL
SIO_010081: AWJ20_2289
subclass of: SO_0000673
so part of: AWJ20_2289
location: 903791..906649
location: region:903791-906649:1
so has part: feature:903791-906649:1:exon

XP_018737161.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:903791-906649:1:exon

AWJ20_2290
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: GAP1
locus tag: AWJ20_2290
so part of: sequence
location: complement(<907083..>908549)
location: region:907083-908549:-1
so has part: feature:907083-908549:-1:exon
subclass of: SO_0000010

30034185
type: Gene
SIO_000068: ncbigene

position:907083:-1
position: 907083
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:908549:-1
position: 908549
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:907083-908549:-1:exon

AWJ20_2290
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: GAP1
locus tag: AWJ20_2290
product: amino acid permease GAP1
transcript id: XM_018879227.1
SIO_010081: AWJ20_2290
subclass of: SO_0000673
so part of: AWJ20_2290
location: complement(<907083..>908549)
location: region:907083-908549:-1
so has part: feature:907083-908549:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:907083-908549:-1:exon

AWJ20_2290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: GAP1
locus tag: AWJ20_2290
inference: similar to AA sequence:KEGG_Orthology:K16261
note: General amino acid permease; Gap1p senses the presence of amino acid substrates to regulate localization to the plasma membrane when needed; essential for invasive growth; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 12499351]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 15039776]; GO_component: GO:0000328 - fungal-type vacuole lumen [Evidence IDA] [PMID 15039776]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 9199164]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005771 - multivesicular body [Evidence IMP] [PMID 14523026]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15623581]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15707981]; GO_function: GO:0015193 - L-proline transmembrane transporter activity [Evidence IGI] [PMID 14968425]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IMP] [PMID 6759873]; GO_function: GO:0015203 - polyamine transmembrane transporter activity [Evidence IMP] [PMID 15707981]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IMP] [PMID 6759873]; GO_process: GO:0015846 - polyamine transport [Evidence IMP] [PMID 15707981]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]
codon start: 1
product: amino acid permease GAP1
translation: MERSLDIESSPKLVESSTPSEGSDRGVVLDKKFGFMTQLIDSFRPMDVSEINTSEMTLAERSAAITAKSPLKRGLKSRHLQMIAIGGTIGTGLFVGSGGSLSQGGPASLVIGYILTGMMLFCTLHAVGELAVRFPVAGGFNTYATRFLDPAWGFAMGWIYALQWLILLPLELVAASLTIQYWRTGGGAAASVNPDAWVAVFFALIIFINVFSVRAYGETEFIFSTIKVVAVVGFIILGIVLVAGGSPNHIGYIGAKYWINPGPFANGFKGVVSVFVNAAFAYSGSELVGLAAAETQNPHKALPSACKQVFWRITLFYVVALTLVGFLVPYTDPRLLGTSSVDANASPFVIAIINSGIKSLPSVVNAVILISAVSVGSSSVYACSRCCQALASQGFLPKIFGYIDREGRPMVAIVFTLVFGLLSFLAGSSAEATVFDWLLSFSGMASLFTWGSICLCHIRFRKAMAVQGISLDELTFKSAVGVWGSWFG
SIO_010081: AWJ20_2290
subclass of: SO_0000673
so part of: AWJ20_2290
location: complement(907083..908549)
location: region:907083-908549:-1
so has part: feature:907083-908549:-1:exon

XP_018737162.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:907083-908549:-1:exon

AWJ20_2291
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2291
so part of: sequence
location: <909885..>911462
location: region:909885-911462:1
so has part: feature:909885-911462:1:exon
subclass of: SO_0000010

30034186
type: Gene
SIO_000068: ncbigene

position:909885:1
position: 909885
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:911462:1
position: 911462
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:909885-911462:1:exon

AWJ20_2291
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2291
product: hypothetical protein
transcript id: XM_018879228.1
SIO_010081: AWJ20_2291
subclass of: SO_0000673
so part of: AWJ20_2291
location: <909885..>911462
location: region:909885-911462:1
so has part: feature:909885-911462:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:909885-911462:1:exon

AWJ20_2291
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2291
inference: similar to AA sequence:KEGG_Orthology:K15627
codon start: 1
product: hypothetical protein
translation: MSVFRRNSKALNESLPFRLSNLVPNSKLELLAKRTNGKQVTANVKIKINVVDLPPSFSESLVGEFPNTTTIWQILKHFEKKSGINFTRRSVAVPSSGTTSGKIMYEIASVHLFSRSISKLEELNQSLASLGFNSGNSSLKIRFTITDIEYEQALDILNGFPDVGVTAGEILAEEDAKVSESRDHSTVPETISSNIPLSADLETHPTNMTSHSVSAPVPNSSSQFETVTRSKPVSAPPVEVGSETFSKDLPKGGAESTTPLNSEQIEDPNLLSDPRHVSSQQEQISGPKPVDSSMEISEPELSQGNSVPLPSTTVPTLPNIQVYLPGSDTSSARFVSSAEEETKMTQQQFVHYHNQIKAMSEGASNRPLMTKALRESEEAKKLSKIKNYQVRVRLPDQTQIESTFYPDNKASSIYDFVRSVLKEDITTPFALFTSPPKVTLDPQMSLLWDYKFSQRNLVYLEWNGPLTNGGSTALLKDKYLSTAKPISEDPGIKQDQLDKENQATAPAKPRGGLSGTPRWLKMGRK
SIO_010081: AWJ20_2291
subclass of: SO_0000673
so part of: AWJ20_2291
location: 909885..911462
location: region:909885-911462:1
so has part: feature:909885-911462:1:exon

XP_018737163.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:909885-911462:1:exon

AWJ20_2292
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SOV1
locus tag: AWJ20_2292
so part of: sequence
location: complement(<911524..>913821)
location: region:911524-913821:-1
so has part: feature:911524-913821:-1:exon
subclass of: SO_0000010

30034187
type: Gene
SIO_000068: ncbigene

position:911524:-1
position: 911524
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:913821:-1
position: 913821
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:911524-913821:-1:exon

AWJ20_2292
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SOV1
locus tag: AWJ20_2292
product: Sov1p
transcript id: XM_018879229.1
SIO_010081: AWJ20_2292
subclass of: SO_0000673
so part of: AWJ20_2292
location: complement(<911524..>913821)
location: region:911524-913821:-1
so has part: feature:911524-913821:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:911524-913821:-1:exon

AWJ20_2292
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SOV1
locus tag: AWJ20_2292
note: Mitochondrial hypothetical protein; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]
codon start: 1
product: Sov1p
translation: MFKQSSPRLARHLTRRSLLKRGAPLARTERRRLRASEREPSTVQPADGSFNIDQLLEALPKLPAHQQDVVRSLLNNQGPAKVDKLLKESYHMVGSKQGPTEQRKISAGGRINLRNKLIYDPETSLETLQEYFPLVLQNPTAFDKLFWKSVVQFYKITRAQGAKVSEESPPPYQFFGELFEVAKLQTNTRIRYSCIKIVGDILYSYNTVRMDPFNEVEYMDSLSYFGNSYRAIQIWKSRRTKKDVEGSLYWLEVGILYHQQAKLLAKAEGLAEEMIQEFGYMQPRVIIGFINSYGPTGNSQLIDKWVNQLTRVIELNNFKLANEKLSEEAEDRIDAERASALFNQIKAPSASDLEKVVALLLKNQLWSQTAVLIEYMEKCGMKNSAHRMLQVLDSTTRRLVNEVNTPKTLIPKQFRRSRRLAAPETNRQLMVVISKIISVYPEVLEYPKFYEAWLRGLTGLELYDNAITVLEAMIDRGIKPTPQHIMSLTRSLLGKNKIEIALELLARLEESSSEFSPAPTSSLYGLFISYGARRSDHELVSGIITRMYSQGLDQSPQTFNALLFYYYRHKDFDSLFKLLERVKGLKGFDLSHANYRSIWMILRDYYNLFSLKALAVNGQTMPPNIRELFIQMVQSGNFRLSMNVFEYVLQTFLLAGDYEGAVAILCFMDTITNIKIPGVITVSVLQLASKIHQKTTYAFSRPSRNELIVEPGYEAETAFSWEMVANKVCETLEIDGQSTISAAKLFVEKIEAPNEYNRLSAADGS
SIO_010081: AWJ20_2292
subclass of: SO_0000673
so part of: AWJ20_2292
location: complement(911524..913821)
location: region:911524-913821:-1
so has part: feature:911524-913821:-1:exon

XP_018737164.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:911524-913821:-1:exon

AWJ20_2293
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: YCF1
locus tag: AWJ20_2293
so part of: sequence
location: complement(<914026..>918042)
location: region:914026-918042:-1
so has part: feature:914026-918042:-1:exon
subclass of: SO_0000010

30034188
type: Gene
SIO_000068: ncbigene

position:914026:-1
position: 914026
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:918042:-1
position: 918042
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:914026-918042:-1:exon

AWJ20_2293
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: YCF1
locus tag: AWJ20_2293
product: ATP-binding cassette glutathione S-conjugate transporter YCF1
transcript id: XM_018879230.1
SIO_010081: AWJ20_2293
subclass of: SO_0000673
so part of: AWJ20_2293
location: complement(<914026..>918042)
location: region:914026-918042:-1
so has part: feature:914026-918042:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:914026-918042:-1:exon

AWJ20_2293
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: YCF1
locus tag: AWJ20_2293
note: Vacuolar glutathione S-conjugate transporter; member of ATP-binding cassette family; ATPase activity required to support vacuole fusion; forms stable complexes with vacuole fusion machinery; regulates Vam7p recruitment to vacuoles; has role in detoxifying metals such as cadmium, mercury, and arsenite; also transports unconjugated bilirubin, selenodigluthatione, and oxidized glutathione; similar to human cystic fibrosis protein CFTR; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 23658021]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 8692889]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0015127 - bilirubin transmembrane transporter activity [Evidence IGI,IMP] [PMID 10790694]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 10220408]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 12383937]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 12755704]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 9217966]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0015723 - bilirubin transport [Evidence IGI,IMP] [PMID 10790694]; GO_proces…
codon start: 1
product: ATP-binding cassette glutathione S-conjugate transporter YCF1
translation: MLLWYWLVALTSSSLKLTNSLLDEEYNSSLLLFLLRTFVTVNSVFVFSLEWLVPRIRNRNVDKDLRNADIFSNLFLLWLNPLINTAFKTDITERDLPEMEDSFSTSELSDKLLDHWNKSSRKGAVGMAFTIARTLRLELVALIGAGFAIDILTYIRPFLLQKILLFVREYNNDRSLPLSIGIYWTLLNGLVSLWIVFLQNRIGLSAVRLSVGVNGAIYGSVFVKALKLSARSRETKTASHIINLMTTDLGQVNNCMQQLLPLFTTPLEIVYCFIVLYSFLGFSFFGGVSIMIIVVPLNAYVSSKFRQLTVDLMKAIDERVKITTSMFSNAKSLKLYAWEGPWLDRLKEARNEHELVLRKKVMFWLTILTGIWSIVPYFIAAGVFGAFLYMEDRPLTADIIFPSLSLFNLLSGPLIAIPYGITMLIQSKVSFQRFADLLSADEQPTDQLIHLPPVNDPKSKLPVVKFSNTTVSWSESEDAAVALDEIDFEAYKRQLLCVIGKVGAGKSALVKTLCGELFLKQGSVSIRGNIAYVPQEPWLLNQSVKDNILFRNKYDPEFYQKTLEACDLVYDIKNLPDGDETEVGERGISLSGGQKARVSLARAVYARADVYVLDDILSAVDEHVGKHLIDHVLGKHGLLASKTIVLATNNVKVLAEADNIILIEDKKIRESGSPLETIGKKGPIYELMKEFGAAQHETVEELKEEIVTVAVQEEPEEQFDDLRRASIESFRSISEEATKELERRKKSQDAVESGAVKSSVYLRYFQASGIGRVTLSVIMIIMVGALTTLGSVWLKLWSDQSITGATSESLYYLGVYVLIGIVYGVIHVSSTYIAQAIAGLKAAEVLHDNMAQMVLRSPMSFFEQTPLGQILNRFTTDINEIDNSVANTLASTFRVLMTMFFAVLVVCYSTPIVTIAVLPVTILYWYYQKFYLVASRQLKRLSSAARSPMMANFEESVKGIKVIRAFEKDRHFIHENNIRSDLVLKTVSHAASVDRWLALRLGIMGSLFVLFTGISGVYMAKLGLMTEGVLGLGMSNAMIITSQLWMVVRQSIEIERRGVTIERIFQYHALKSEAPEIVENNRPPAYWPSEGRITFDKFSTRYKEGMKLVLKDINLDIKPREKIGVVGRTGAGKSTLTLSLFRLIEPASGTVVVDNINTNDIGLLDLRHNMSIIPQDAQIFSGTVRDNLDPFRERDDTDLWRVLELCHLKDHVSGMEGGLDAALADSGENLSKGQAQLICLARALLHDSNILVLDEATASVDVETDKIIQQTIRTELKHKTIITIAHRLNTIMDSDRIVVLEKGEIAEFDSPQNLLAKPESLFYGLCEKAGLVGNEDKN
SIO_010081: AWJ20_2293
subclass of: SO_0000673
so part of: AWJ20_2293
location: complement(914026..918042)
location: region:914026-918042:-1
so has part: feature:914026-918042:-1:exon

XP_018737165.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:914026-918042:-1:exon

AWJ20_2294
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SDT1
locus tag: AWJ20_2294
so part of: sequence
location: complement(<925526..>926143)
location: region:925526-926143:-1
so has part: feature:925526-926143:-1:exon
subclass of: SO_0000010

30034189
type: Gene
SIO_000068: ncbigene

position:925526:-1
position: 925526
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:926143:-1
position: 926143
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:925526-926143:-1:exon

AWJ20_2294
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SDT1
locus tag: AWJ20_2294
product: Sdt1p
transcript id: XM_018879231.1
SIO_010081: AWJ20_2294
subclass of: SO_0000673
so part of: AWJ20_2294
location: complement(<925526..>926143)
location: region:925526-926143:-1
so has part: feature:925526-926143:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:925526-926143:-1:exon

AWJ20_2294
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SDT1
locus tag: AWJ20_2294
inference: similar to AA sequence:KEGG_Orthology:K18551
note: Pyrimidine nucleotidase; responsible for production of nicotinamide riboside and nicotinic acid riboside; overexpression suppresses the 6-AU sensitivity of transcription elongation factor S-II, as well as resistance to other pyrimidine derivatives; SDT1 has a paralog, PHM8, that arose from the whole genome duplication; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008252 - nucleotidase activity [Evidence IDA] [PMID 11934891]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006206 - pyrimidine nucleobase metabolic process [Evidence IMP] [PMID 11934891]
codon start: 1
product: Sdt1p
translation: MQQLIHKYFVTHLELDDESAELLHQRYYKEFGLAIEGLVRFNKIDAMAYNAEVDDALPLDGIMKPDPDLRKMLLSIDRTKVKKLWLLTNAYINHARRVVRLLGVDDLFDGITYCDYAQVPLICKPKREMFHKAMEQAGVDDVNKCYFVDDSYINIVGARKFGFKKPIQYVDADDPLPEKPASDYTVRSLLELPQLVPEVFKIEEN
SIO_010081: AWJ20_2294
subclass of: SO_0000673
so part of: AWJ20_2294
location: complement(925526..926143)
location: region:925526-926143:-1
so has part: feature:925526-926143:-1:exon

XP_018737166.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:925526-926143:-1:exon

AWJ20_2295
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: IDH2
locus tag: AWJ20_2295
so part of: sequence
location: complement(<927087..>928073)
location: region:927087-928073:-1
so has part: feature:927087-928073:-1:exon
subclass of: SO_0000010

30034190
type: Gene
SIO_000068: ncbigene

position:927087:-1
position: 927087
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:928073:-1
position: 928073
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:927087-928073:-1:exon

AWJ20_2295
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: IDH2
locus tag: AWJ20_2295
product: isocitrate dehydrogenase (NAD(+)) IDH2
transcript id: XM_018879232.1
SIO_010081: AWJ20_2295
subclass of: SO_0000673
so part of: AWJ20_2295
location: complement(<927087..>928073)
location: region:927087-928073:-1
so has part: feature:927087-928073:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:927087-928073:-1:exon

AWJ20_2295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: IDH2
locus tag: AWJ20_2295
inference: similar to AA sequence:KEGG_Orthology:K00030
note: Subunit of mitochondrial NAD(+)-dependent isocitrate dehydrogenase; complex catalyzes the oxidation of isocitrate to alpha-ketoglutarate in the TCA cycle; phosphorylated; GO_component: GO:0005962 - mitochondrial isocitrate dehydrogenase complex (NAD+) [Evidence IDA] [PMID 16884682]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004449 - isocitrate dehydrogenase (NAD+) activity [Evidence IEA,IEA]; GO_function: GO:0004449 - isocitrate dehydrogenase (NAD+) activity [Evidence IDA] [PMID 16884682]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0006537 - glutamate biosynthetic process [Evidence TAS] [PMID 9175438]; GO_process: GO:0006102 - isocitrate metabolic process [Evidence IDA] [PMID 16884682]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence TAS] [PMID 9175438]
codon start: 1
product: isocitrate dehydrogenase (NAD(+)) IDH2
translation: MIEGDGIGVEISEAVKDIYKAAKVPIDWELADVTPIFVDGKTSIPPEAIESINKNKVALKGPLATPVGKGHVSLNLTLRRTFNLFANVRPCKSVVGFQTPYEDVDTVLIRENTEGEYSGIEHVVVPGVVQSIKLITRAASERVARYAFEYARSIGKKKVLVVHKATVMKYGDGLFLESAQKIAKEFPDIEIHTELIDRTCLNMVTNPAPYKEYVMVMPNLYGDIMSDLSSGLIGGLGLTPSGNMGDEVSIFEAVHGSAPDIAGKGLANPTALLLSSVMMLRHMGLNDEAARIEKAVLDTIASGKENITRDLKGTASTKHFTEQVISRL
SIO_010081: AWJ20_2295
subclass of: SO_0000673
so part of: AWJ20_2295
location: complement(927087..928073)
location: region:927087-928073:-1
so has part: feature:927087-928073:-1:exon

XP_018737167.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:927087-928073:-1:exon

AWJ20_2296
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2296
so part of: sequence
location: <927154..>927447
location: region:927154-927447:1
so has part: feature:927154-927447:1:exon
subclass of: SO_0000010

30034191
type: Gene
SIO_000068: ncbigene

position:927154:1
position: 927154
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:927447:1
position: 927447
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:927154-927447:1:exon

AWJ20_2296
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2296
product: hypothetical protein
transcript id: XM_018879233.1
SIO_010081: AWJ20_2296
subclass of: SO_0000673
so part of: AWJ20_2296
location: <927154..>927447
location: region:927154-927447:1
so has part: feature:927154-927447:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:927154-927447:1:exon

AWJ20_2296
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2296
codon start: 1
product: hypothetical protein
translation: MFSLPEAMVSRTAFSILAASSLRPMCLNIITDESSRAVGLAKPLPAISGADPWTASKMETSSPMLPEGVKPRPPIKPEDKSDMISPYKLGMTMTYSL
SIO_010081: AWJ20_2296
subclass of: SO_0000673
so part of: AWJ20_2296
location: 927154..927447
location: region:927154-927447:1
so has part: feature:927154-927447:1:exon

XP_018737168.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:927154-927447:1:exon

AWJ20_2297
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SRC1
locus tag: AWJ20_2297
so part of: sequence
location: complement(<933933..>936488)
location: region:933933-936488:-1
so has part: feature:933933-936488:-1:exon
subclass of: SO_0000010

30034192
type: Gene
SIO_000068: ncbigene

position:933933:-1
position: 933933
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:936488:-1
position: 936488
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:933933-936488:-1:exon

AWJ20_2297
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SRC1
locus tag: AWJ20_2297
product: Src1p
transcript id: XM_018879234.1
SIO_010081: AWJ20_2297
subclass of: SO_0000673
so part of: AWJ20_2297
location: complement(<933933..>936488)
location: region:933933-936488:-1
so has part: feature:933933-936488:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:933933-936488:-1:exon

AWJ20_2297
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SRC1
locus tag: AWJ20_2297
note: Inner nuclear membrane protein; highly enriched at telomeres and subtelomeric regions; functions in regulation of subtelomeric genes and is linked to TREX (transcription export) factors; SRC1 produces 2 splice variant proteins with different functions; alternative splicing of SRC1 pre-mRNA is promoted by Hub1p; mutant has aneuploidy tolerance; SEC1 has a paralog, HEH2, that arose from the whole genome duplication; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IDA] [PMID 18762579]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005639 - integral component of nuclear inner membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 16929305]; GO_component: GO:0005637 - nuclear inner membrane [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0043007 - maintenance of rDNA [Evidence IMP] [PMID 18997772]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IGI] [PMID 11754482]
codon start: 1
product: Src1p
translation: MSRQTGRRSVPPDAGEDERYYLRDGFDPASLTITQLRNVMAVHDVDFPPSGAKKATWVEHFKVHVLPRAAEFLSEYDNISPHGAGIVDAAPPKRSARSRSPAKRSPSKSERKSAVEPIAEIPAATEVPPVAELTAPVVAEPASPSKSRSRTTRAKSPAKGTESTSASTKSKPPPSPSRRSRKTDSTTAPATAIEIETVIESTVTSSEPVPNILESAISLAPPGTLASAFESTTGDATSTATTKSSTSKASSSPKKTRKTLKQQYVDPSEYELNTQPKTEKTLNPVSITGTSPRKSIKEEPLVGQGSSDRNVFQKPTPQKASESPFSNKNIFQKGSPSSPKARKRAHKEVEESTDSPQPSSAKKRAKDTTPKRSAPKDTFSSIVQFDNDVTMADDTKSVPYFTPHIPQQPQEVQPQPDLKQPSEFQPVQYSQYVQPLQQEQQQPIPATPGSVRRFTSFPNTPEDDHSNTQATPSRSPPRAPPATAPHNSVRDHSFPRASSSKRLSFMPDVKHLRVSDEFSRQLQQEQQEKKEPAFVLPEQLNDNPKQDQESTEVKNEETEQEAEPVTDGRVGIEVIKKGEVAAEDLHESDLEKYHELEREIEEEDRALKKKLRKQHKKRSKSKAESTDYVELFFSALAYVFRVTATLSLVFYASWWCVERFRIGYCDVLTSPEPRTISIPSQWIEKASPYVSADSLYKFENYINQAIEYGTPECVPCPEHAACYPNFRVACEEGYVPVQSLISLGGTLPFPPTCVPDMARRNKVAALAKRAVEILRKRNANVKCGITDESTPEISEDKLRQELLKQTIASLSEEEFNDLWRQALKDIENEKDIIVRQDKLTFGYAVQRVQIA
SIO_010081: AWJ20_2297
subclass of: SO_0000673
so part of: AWJ20_2297
location: complement(933933..936488)
location: region:933933-936488:-1
so has part: feature:933933-936488:-1:exon

XP_018737169.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:933933-936488:-1:exon

AWJ20_2298
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: AMD1
locus tag: AWJ20_2298
so part of: sequence
location: <937355..>939925
location: region:937355-939925:1
so has part: feature:937355-939925:1:exon
subclass of: SO_0000010

30034193
type: Gene
SIO_000068: ncbigene

position:937355:1
position: 937355
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:939925:1
position: 939925
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:937355-939925:1:exon

AWJ20_2298
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: AMD1
locus tag: AWJ20_2298
product: AMP deaminase
transcript id: XM_018879235.1
SIO_010081: AWJ20_2298
subclass of: SO_0000673
so part of: AWJ20_2298
location: <937355..>939925
location: region:937355-939925:1
so has part: feature:937355-939925:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:937355-939925:1:exon

AWJ20_2298
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: AMD1
locus tag: AWJ20_2298
inference: similar to AA sequence:KEGG_Orthology:K01490
note: AMP deaminase; tetrameric enzyme that catalyzes the deamination of AMP to form IMP and ammonia; thought to be involved in regulation of intracellular purine (adenine, guanine, and inosine) nucleotide pools; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003876 - AMP deaminase activity [Evidence IEA,IEA]; GO_function: GO:0003876 - AMP deaminase activity [Evidence IDA,IMP] [PMID 2690949]; GO_function: GO:0019239 - deaminase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0006188 - IMP biosynthetic process [Evidence IEA]; GO_process: GO:0032264 - IMP salvage [Evidence IEA]; GO_process: GO:0006178 - guanine salvage [Evidence IGI,IMP] [PMID 19635936]; GO_process: GO:0009117 - nucleotide metabolic process [Evidence IEA]; GO_process: GO:0006163 - purine nucleotide metabolic process [Evidence IGI] [PMID 15869715]; GO_process: GO:0006163 - purine nucleotide metabolic process [Evidence IGI] [PMID 18433446]; GO_process: GO:0006163 - purine nucleotide metabolic process [Evidence IGI,IMP] [PMID 19635936]; GO_process: GO:0006163 - purine nucleotide metabolic process [Evidence IMP] [PMID 20087341]; GO_process: GO:0009168 - purine ribonucleoside monophosphate biosynthetic process [Evidence IEA]
codon start: 1
product: AMP deaminase
translation: MSVSEIMFQNDDDRMEADKEIEMEDGFDEQELINMSPSSTTAHSYVDEKSLQAMAAKLNALNVHGGGNGSSTAGSVNTGFGGSLDGSGSPGSFHGIGSPHESLHSSPAKSRIASSNTLKSLVDPSLSPKSSHSTTAHAAAAIAAPHPSLDMASQSPHTYGSFQKQYAQGTFHQEGHKEDPDVFRELNTMYSKVQSCIDTRHKYQSISLQRESDNPKNSSEWEIYPPPPKPSWKPQTKEFAATVFEEDENERANENDGVEDGEADDHVNEHVTNGTNPPSRRPRLSRIGSKLEVGDDFDMANCPIPTPSEYIFAADDDSVFQVYESQEALDQGLPIVDVPTLRDYYMDMDRIISISSDGPVKSFAFRRLQYLEAKWNLYSLLNEYQETADSKKTPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKYKMKKFPNEVVIYRDNKLLTLTQVFDSLGLTAYDLSIDTLDMHAHKDSFHRFDKFNLKYNPIGESRLREIFLKTDNYIKGRYLAEITKEVVEDLEQSKYQMAEYRISIYGRDPNEWSKLAAWVIDNKLLSHNVRWLIQIPRLYNIYKEGGIVKNFNDVVENVFKPLFEVTKDPSKDPKLHVFLQRVIGFDSVDDESKVDRRFHKKYPTPKYWDNAQNPPYSYYLYYLYANMSSLNAWRKKLGYNTFVLRPHAGEAGDPEHLVAAFLTSHSISHGILLRKVPFIQYLYYLDQIGIAMSPLSNNALFLNYDKNPFHSYFKRGLNVSLSTDDPLQFSYTREPLIEEYSVAAQIYKLSNVDMCELARNSVIQSGFEAALKKHWIGKTYTLRGPKGNVMEKTNVPNVRLAYREETFLHEVGLIERYTGISSCLRNER
SIO_010081: AWJ20_2298
subclass of: SO_0000673
so part of: AWJ20_2298
location: 937355..939925
location: region:937355-939925:1
so has part: feature:937355-939925:1:exon

XP_018737170.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:937355-939925:1:exon

AWJ20_2299
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TAH18
locus tag: AWJ20_2299
so part of: sequence
location: complement(<940172..>942076)
location: region:940172-942076:-1
so has part: feature:940172-942076:-1:exon
subclass of: SO_0000010

30034194
type: Gene
SIO_000068: ncbigene

position:940172:-1
position: 940172
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:942076:-1
position: 942076
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:940172-942076:-1:exon

AWJ20_2299
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TAH18
locus tag: AWJ20_2299
product: Tah18p
transcript id: XM_018879236.1
SIO_010081: AWJ20_2299
subclass of: SO_0000673
so part of: AWJ20_2299
location: complement(<940172..>942076)
location: region:940172-942076:-1
so has part: feature:940172-942076:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:940172-942076:-1:exon

AWJ20_2299
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TAH18
locus tag: AWJ20_2299
note: Conserved NAPDH-dependent diflavin reductase; component of an early step in the cytosolic Fe-S protein assembly (CIA) machinery; transfers electrons from NADPH to the Fe-S cluster of Dre2p; plays a pro-death role under oxidative stress; Tah18p-dependent nitric oxide synthesis confers high-temperature stress tolerance; possible target for development of antifungal drugs; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19194512]; GO_function: GO:0010181 - FMN binding [Evidence IEA,IEA]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0003958 - NADPH-hemoprotein reductase activity [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]; GO_function: GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IDA] [PMID 20802492]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 20802492]; GO_process: GO:0006809 - nitric oxide biosynthetic process [Evidence IMP] [PMID 23159617]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IDA] [PMID 20802492]
codon start: 1
product: Tah18p
translation: MDSIVGSVSPQRSVLILYGTETGNAQDCAEILAKKCQRLRLNPTVCGMDDYDVSQLPLESTIIVICSTTGQGDLPRNALKFWRFLLRKKLPPTLLSHIRFTSFGLGDSSYPRYNWAIRKVHKRLMQLGAREFIGRGEGDEMGTESLDSQFESWIDLISERLLQPDMFPLAPGTEVISDNILLEPRYKLSVDTKKIRRLTSGEAQTATIALTRGDALVGTVVSNKRITAQEHFQDVRNFEFTASQEDSTPSLDYLPGDTVGLYPRNDATDVNELLEHQGWSEIADHPVTVNEEFEKAIIGGLVKPLTLRSLITHHLDISAIPRRSFFAVAWHFSTDNEREQERLKEFSTIEGLQDLYDYANRSRRSILETITEFYSLKIPVEYILDLIPILRPRLFSISSPSPGSFRAVNDGVQTSDNEKPSDPVNKTSFSLTIAIVKYKTIIKRIRRGVCTKWVEGLTEGDKIPFSLFRASFKSEDVHDIETPIIMIAPGTGIAPMRSLILTRAAKEAVLQPDTAASMLLFFGCRYKEKDYLYEDDWNRVSNSGHSSLTVIPAFSRENGGYVQDKLYSAKDQVSELLVKQNASIYVCGSAGKMPRQVRITIATILEETQNWSTETTEAYVSSMERTGRYLQETW
SIO_010081: AWJ20_2299
subclass of: SO_0000673
so part of: AWJ20_2299
location: complement(940172..942076)
location: region:940172-942076:-1
so has part: feature:940172-942076:-1:exon

XP_018737171.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:940172-942076:-1:exon

AWJ20_2300
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MGE1
locus tag: AWJ20_2300
so part of: sequence
location: <944999..>945778
location: region:944999-945778:1
so has part: feature:944999-945778:1:exon
subclass of: SO_0000010

30034197
type: Gene
SIO_000068: ncbigene

position:944999:1
position: 944999
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:945778:1
position: 945778
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:944999-945778:1:exon

AWJ20_2300
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MGE1
locus tag: AWJ20_2300
product: Mge1p
transcript id: XM_018879238.1
SIO_010081: AWJ20_2300
subclass of: SO_0000673
so part of: AWJ20_2300
location: <944999..>945778
location: region:944999-945778:1
so has part: feature:944999-945778:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:944999-945778:1:exon

AWJ20_2300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MGE1
locus tag: AWJ20_2300
inference: similar to AA sequence:KEGG_Orthology:K03687
note: N-terminus has a leader sequence with features reminiscent of mitochondrial import signals. Translated as a 28KDa precursor protein which is cleaved to a 21KDa mature form.
codon start: 1
product: Mge1p
translation: MLRRSLMRSSPSSALVSSSVRAATRPVVMARPIARTQMVNSRGLFGFRSYSETANGEKKDAESAANEASSENTKEETQTSESEYANLSVEELQSKLKELQSKFEAKDKEVAKFKEHYTRSVADFRNLQETTKREIQKARDYALQKFAKDLLDSVDNFDRALAVVPEEKRSDKENHVELANLYEGVKMTQEVFEKTLARHGLVKLNPLGEKFDPNVHEATFEVPQPDKEPGTVFHVQQTGFALNDRVLRAPKVGVVKGTD
SIO_010081: AWJ20_2300
subclass of: SO_0000673
so part of: AWJ20_2300
location: 944999..945778
location: region:944999-945778:1
so has part: feature:944999-945778:1:exon

XP_018737172.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:944999-945778:1:exon

AWJ20_2301
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MSF1
locus tag: AWJ20_2301
so part of: sequence
location: complement(<946050..>947468)
location: region:946050-947468:-1
so has part: feature:946050-947468:-1:exon
subclass of: SO_0000010

30034198
type: Gene
SIO_000068: ncbigene

position:946050:-1
position: 946050
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:947468:-1
position: 947468
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:946050-947468:-1:exon

AWJ20_2301
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MSF1
locus tag: AWJ20_2301
product: phenylalanine--tRNA ligase
transcript id: XM_018879239.1
SIO_010081: AWJ20_2301
subclass of: SO_0000673
so part of: AWJ20_2301
location: complement(<946050..>947468)
location: region:946050-947468:-1
so has part: feature:946050-947468:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:946050-947468:-1:exon

AWJ20_2301
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MSF1
locus tag: AWJ20_2301
inference: similar to AA sequence:KEGG_Orthology:K01889
note: Mitochondrial phenylalanyl-tRNA synthetase; active as a monomer, unlike the cytoplasmic subunit which is active as a dimer complexed to a beta subunit dimer; similar to the alpha subunit of E. coli phenylalanyl-tRNA synthetase; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 3029120]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IDA] [PMID 16162501]; GO_function: GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IDA] [PMID 1924298]; GO_function: GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IMP,ISS] [PMID 3029120]; GO_function: GO:0000049 - tRNA binding [Evidence IEA]; GO_process: GO:0070156 - mitochondrial phenylalanyl-tRNA aminoacylation [Evidence IMP] [PMID 3029120]; GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IDA] [PMID 1924298]; GO_process: GO:0043039 - tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]
codon start: 1
product: phenylalanine--tRNA ligase
translation: MTANISRSSGFLLQRVSAPAVRRWNINARSSIAQSLKRNISTESSSGNATITVLGKEYPTDDFTNLPNSIANLTSRKLHLQPSHPIGILRSLIESRLKDLGFTSYNDFKPVVSTYENFDALGFPEDHPGRSKTDTYYINEKTLLRTHTSAHESECFQTCETPGYLISADVYRRDTIDRTHYPAFHQMEGARVWSRTEHGDNLAKVIQEDLESIPDSGIIVSDPDPPFHEGNPRQPTMSELETELIGKHLKKTIELLMGHVFHQAREAAIKAGSTDPDLFSPIKARWIEAYFPWTSPSWEIEIWWKGEWLEMCGCGVVKHEVLSGAGVGDKIGWAFGIGLERTAMILFGVPDIRLFWSEDERFLSQFKPNTVSTFKPYSKYPGTFRDVAFWCDMAKEVHINDLMEVVRSIGGDLVENVSLIDEFVHPKTKQKSQCYRINYQSMDRSLTNAEINDLQDAVVSSLSTQFPIKIRD
SIO_010081: AWJ20_2301
subclass of: SO_0000673
so part of: AWJ20_2301
location: complement(946050..947468)
location: region:946050-947468:-1
so has part: feature:946050-947468:-1:exon

XP_018737173.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:946050-947468:-1:exon

AWJ20_2302
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2302
so part of: sequence
location: <946438..>946851
location: region:946438-946851:1
so has part: feature:946438-946851:1:exon
subclass of: SO_0000010

30034199
type: Gene
SIO_000068: ncbigene

position:946438:1
position: 946438
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:946851:1
position: 946851
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:946438-946851:1:exon

AWJ20_2302
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2302
product: hypothetical protein
transcript id: XM_018879240.1
SIO_010081: AWJ20_2302
subclass of: SO_0000673
so part of: AWJ20_2302
location: <946438..>946851
location: region:946438-946851:1
so has part: feature:946438-946851:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:946438-946851:1:exon

AWJ20_2302
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2302
codon start: 1
product: hypothetical protein
translation: MAVRSRPIPKAQPILSPTPAPERTSCFTTPHPHISSHSPFHQISISQDGEVQGKYASIQRALMGEKRSGSVDPALIAASRAWWNTWPMSSSIVFFKCLPISSVSSSDIVGWRGLPSWNGGSGSETIMPESGMLSRSS
SIO_010081: AWJ20_2302
subclass of: SO_0000673
so part of: AWJ20_2302
location: 946438..946851
location: region:946438-946851:1
so has part: feature:946438-946851:1:exon

XP_018737174.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:946438-946851:1:exon

AWJ20_2303
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MRPL16
locus tag: AWJ20_2303
so part of: sequence
location: <948033..>948749
location: region:948033-948749:1
so has part: feature:948033-948749:1:exon
subclass of: SO_0000010

30034200
type: Gene
SIO_000068: ncbigene

position:948033:1
position: 948033
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:948749:1
position: 948749
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:948033-948749:1:exon

AWJ20_2303
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MRPL16
locus tag: AWJ20_2303
product: mitochondrial 54S ribosomal protein YmL47
transcript id: XM_018879241.1
SIO_010081: AWJ20_2303
subclass of: SO_0000673
so part of: AWJ20_2303
location: <948033..>948749
location: region:948033-948749:1
so has part: feature:948033-948749:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:948033-948749:1:exon

AWJ20_2303
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MRPL16
locus tag: AWJ20_2303
note: Mitochondrial ribosomal protein of the large subunit; homologous to bacterial L16 ribosomal protein; synthetically lethal with hac1 mutant suggesting a role in the maturation of secretory proteins; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 7478995]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 7478995]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 7478995]; GO_process: GO:0051604 - protein maturation [Evidence IMP] [PMID 19433630]; GO_process: GO:0006412 - translation [Evidence IEA]
codon start: 1
product: mitochondrial 54S ribosomal protein YmL47
translation: MFSRVFSALKPSALLAPSSLLTSVGASRTTALTSRFGGSTFQQIRLKHQYEPRVRIKRKAQKGRVPVRTGGSIKGSTLQFGKFGLRLKSEGVRLKAVQLKEADNAIMRALRPLKGKLFRRLTTNIPVCVKGNETRMGKGKGGFEFWACRVPTGKILFEIDGANVHESVARDAFRIAGDKLPGTYEFVNLETAPKAGFQPVNVDGSPVNFYEEAKANPTKQYANVLQGQDPELRKYLRR
SIO_010081: AWJ20_2303
subclass of: SO_0000673
so part of: AWJ20_2303
location: 948033..948749
location: region:948033-948749:1
so has part: feature:948033-948749:1:exon

XP_018737175.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:948033-948749:1:exon

AWJ20_2304
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RFC5
locus tag: AWJ20_2304
so part of: sequence
location: complement(<949020..>950087)
location: region:949020-950087:-1
so has part: feature:949020-950087:-1:exon
subclass of: SO_0000010

30034201
type: Gene
SIO_000068: ncbigene

position:949020:-1
position: 949020
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:950087:-1
position: 950087
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:949020-950087:-1:exon

AWJ20_2304
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RFC5
locus tag: AWJ20_2304
product: replication factor C subunit 5
transcript id: XM_018879242.1
SIO_010081: AWJ20_2304
subclass of: SO_0000673
so part of: AWJ20_2304
location: complement(<949020..>950087)
location: region:949020-950087:-1
so has part: feature:949020-950087:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:949020-950087:-1:exon

AWJ20_2304
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RFC5
locus tag: AWJ20_2304
inference: similar to AA sequence:KEGG_Orthology:K10756
note: Subunit of heteropentameric Replication factor C (RF-C); RF-C is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon; GO_component: GO:0031390 - Ctf18 RFC-like complex [Evidence IPI] [PMID 11389843]; GO_component: GO:0005663 - DNA replication factor C complex [Evidence IDA] [PMID 7651383]; GO_component: GO:0005663 - DNA replication factor C complex [Evidence IMP] [PMID 8559655]; GO_component: GO:0031391 - Elg1 RFC-like complex [Evidence IPI] [PMID 12909721]; GO_component: GO:0031391 - Elg1 RFC-like complex [Evidence IPI] [PMID 12912927]; GO_component: GO:0031389 - Rad17 RFC-like complex [Evidence IDA] [PMID 12604797]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003689 - DNA clamp loader activity [Evidence IDA] [PMID 12604797]; GO_function: GO:0003689 - DNA clamp loader activity [Evidence IDA] [PMID 8995429]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0006272 - leading strand elongation [Evidence IDA] [PMID 1346062]; GO_process: GO:0007062 - sister chromatid cohesion [Evidence IPI] [PMID 11389843]; GO_process: GO:0007062 - sister chromatid cohesion [Evidence IMP] [PMID 12665596]
codon start: 1
product: replication factor C subunit 5
translation: MSLWVHKYMPKSLDTLDYHDGLSKSLKSLAASGEFPHMLMYGPSGAGKKTRVMAVLRELYGPGVSKIKIDGRVFQTNSKKVEFNIVSSVHHLEITPSDMGNNDRVVIQDLLKEIAQTQQVDLSSKQRFKVVVINEADSLTRDAQSALRRTMEKYSPNLRLILLATSTSNIIGPIKSRTLLVRVAAPTNQEIANVLSKVAKKEKVDLPSSPDDLQYLWDKIARQSQRNLRKSLLILEAMYAQNDKITRDTPVPPADWELVISKLADDTIKKRSVAQLLQIRGTLYELLTHCIPAPVILKSLTFSLLKKVSPEVGADIIEAAGFYDHRLRQGSKAIFHLEAYVARVMNLLETFDMTH
SIO_010081: AWJ20_2304
subclass of: SO_0000673
so part of: AWJ20_2304
location: complement(949020..950087)
location: region:949020-950087:-1
so has part: feature:949020-950087:-1:exon

XP_018737176.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:949020-950087:-1:exon

AWJ20_2305
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: STL1
locus tag: AWJ20_2305
so part of: sequence
location: complement(<950442..>950783)
location: region:950442-950783:-1
so has part: feature:950442-950783:-1:exon
subclass of: SO_0000010

30034202
type: Gene
SIO_000068: ncbigene

position:950442:-1
position: 950442
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:950783:-1
position: 950783
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:950442-950783:-1:exon

AWJ20_2305
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: STL1
locus tag: AWJ20_2305
product: glucose-inactivated glycerol proton symporter STL1
transcript id: XM_018879243.1
SIO_010081: AWJ20_2305
subclass of: SO_0000673
so part of: AWJ20_2305
location: complement(<950442..>950783)
location: region:950442-950783:-1
so has part: feature:950442-950783:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:950442-950783:-1:exon

AWJ20_2305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: STL1
locus tag: AWJ20_2305
codon start: 1
product: glucose-inactivated glycerol proton symporter STL1
translation: MVVMITPVAFANINYYTYTVFAALNLLILVATYIFYPETAGRSLEEIDKIFEKSNPRTPWDVVKIAQELPHHNAILDEETGYHGEEDVLDKPTHQYQEDTATSLSSSGGKGDM
SIO_010081: AWJ20_2305
subclass of: SO_0000673
so part of: AWJ20_2305
location: complement(950442..950783)
location: region:950442-950783:-1
so has part: feature:950442-950783:-1:exon

XP_018737177.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:950442-950783:-1:exon

AWJ20_2306
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: STL1
locus tag: AWJ20_2306
so part of: sequence
location: complement(<951331..>951828)
location: region:951331-951828:-1
so has part: feature:951331-951828:-1:exon
subclass of: SO_0000010

30034203
type: Gene
SIO_000068: ncbigene

position:951331:-1
position: 951331
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:951828:-1
position: 951828
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:951331-951828:-1:exon

AWJ20_2306
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: STL1
locus tag: AWJ20_2306
product: glucose-inactivated glycerol proton symporter STL1
transcript id: XM_018879244.1
SIO_010081: AWJ20_2306
subclass of: SO_0000673
so part of: AWJ20_2306
location: complement(<951331..>951828)
location: region:951331-951828:-1
so has part: feature:951331-951828:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:951331-951828:-1:exon

AWJ20_2306
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: STL1
locus tag: AWJ20_2306
codon start: 1
product: glucose-inactivated glycerol proton symporter STL1
translation: MVEGALITAGIMISYWLDFGFFFAKGSVNWRFPIAFQIVFAIVIVCFVLVSIHSFCSTYYNSDFLTFQQSLPDSPRWLIKKDRVEEARLIFSALDDVEPDHHLITAQIEEIVATLIDEERSNAPIRRLFTFGREKHFHRAMLGFWNQAAQQLTGINLVGIMREEV
SIO_010081: AWJ20_2306
subclass of: SO_0000673
so part of: AWJ20_2306
location: complement(951331..951828)
location: region:951331-951828:-1
so has part: feature:951331-951828:-1:exon

XP_018737178.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:951331-951828:-1:exon

AWJ20_2307
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: STL1
locus tag: AWJ20_2307
so part of: sequence
location: complement(<951898..>952176)
location: region:951898-952176:-1
so has part: feature:951898-952176:-1:exon
subclass of: SO_0000010

30034204
type: Gene
SIO_000068: ncbigene

position:951898:-1
position: 951898
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:952176:-1
position: 952176
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:951898-952176:-1:exon

AWJ20_2307
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: STL1
locus tag: AWJ20_2307
product: glucose-inactivated glycerol proton symporter STL1
transcript id: XM_018879245.1
SIO_010081: AWJ20_2307
subclass of: SO_0000673
so part of: AWJ20_2307
location: complement(<951898..>952176)
location: region:951898-952176:-1
so has part: feature:951898-952176:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:951898-952176:-1:exon

AWJ20_2307
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: STL1
locus tag: AWJ20_2307
codon start: 1
product: glucose-inactivated glycerol proton symporter STL1
translation: MNDSTIQGTVVSLYEIGCLMGALATMRFGDQFGRRKVIFVGAIVMTIGATLQCTSFSLAQLIVGRIVTGIGNGFITSTVSGTASCYLLLALG
SIO_010081: AWJ20_2307
subclass of: SO_0000673
so part of: AWJ20_2307
location: complement(951898..952176)
location: region:951898-952176:-1
so has part: feature:951898-952176:-1:exon

XP_018737179.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:951898-952176:-1:exon

AWJ20_2308
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SPS19
locus tag: AWJ20_2308
so part of: sequence
location: <955858..>956838
location: region:955858-956838:1
so has part: feature:955858-956838:1:exon
subclass of: SO_0000010

30034205
type: Gene
SIO_000068: ncbigene

position:955858:1
position: 955858
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:956838:1
position: 956838
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:955858-956838:1:exon

AWJ20_2308
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SPS19
locus tag: AWJ20_2308
product: Sps19p
transcript id: XM_018879246.1
SIO_010081: AWJ20_2308
subclass of: SO_0000673
so part of: AWJ20_2308
location: <955858..>956838
location: region:955858-956838:1
so has part: feature:955858-956838:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:955858-956838:1:exon

AWJ20_2308
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SPS19
locus tag: AWJ20_2308
inference: similar to AA sequence:KEGG_Orthology:K13237
note: Peroxisomal 2,4-dienoyl-CoA reductase; auxiliary enzyme of fatty acid beta-oxidation; homodimeric enzyme required for growth and sporulation on petroselineate medium; expression induced during late sporulation and in the presence of oleate; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 9268358]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IDA,ISS] [PMID 9268358]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IEP,IMP] [PMID 7969036]; GO_process: GO:0009062 - fatty acid catabolic process [Evidence IDA,ISS] [PMID 9268358]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]
codon start: 1
product: Sps19p
translation: MSPPEETVTTGNNSSVADGPQKVVLPITPFETYPKARAAPKELIGVEAALHAAKNPDFQAVSTIAGQFSLKDKVAIVTGGNSGIGLEYSVVLAELGAIVYVLDLPEAPSEDYAACKAYIKKLATGGSLEYRVANVTDGPGMAKVTHEIAETHGRLDVCIANAGILGPVVDCHEYPADWFRKIMEVNVTGVFLTAQAAIKEMLERKIKGSVIFTASMSGSIINKDMHWIPYTTAKAAVVQLAKAFACEVGTNEIRVNCISPGHIRTRMTEAYLGVEPLIENCWAAQNPMNRLGSVYELRGTVAYLASDASTYTTGHDLQVCGGHTAW
SIO_010081: AWJ20_2308
subclass of: SO_0000673
so part of: AWJ20_2308
location: 955858..956838
location: region:955858-956838:1
so has part: feature:955858-956838:1:exon

XP_018737180.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:955858-956838:1:exon

AWJ20_2309
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2309
so part of: sequence
location: complement(<957086..>957586)
location: region:957086-957586:-1
so has part: feature:957086-957586:-1:exon
subclass of: SO_0000010

30034206
type: Gene
SIO_000068: ncbigene

position:957086:-1
position: 957086
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:957586:-1
position: 957586
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:957086-957586:-1:exon

AWJ20_2309
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2309
product: hypothetical protein
transcript id: XM_018879247.1
SIO_010081: AWJ20_2309
subclass of: SO_0000673
so part of: AWJ20_2309
location: complement(<957086..>957586)
location: region:957086-957586:-1
so has part: feature:957086-957586:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:957086-957586:-1:exon

AWJ20_2309
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2309
inference: similar to AA sequence:KEGG_Orthology:K01808
codon start: 1
product: hypothetical protein
translation: MARQYKIVVGCDNAGCDYKNAIKADLEKLPSVSQVIDVGVEHSKDSKAYPSVAIAAAEKVANGEADRAILICGTGLGVAIAANKVKGIRAVTAHDSFSVERSILSNNAQILCMGQRVVGIELARRLAKEWMTYEFDTSSASAEKVAEIVNYENANANDAPSQINGC
SIO_010081: AWJ20_2309
subclass of: SO_0000673
so part of: AWJ20_2309
location: complement(957086..957586)
location: region:957086-957586:-1
so has part: feature:957086-957586:-1:exon

XP_018737181.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:957086-957586:-1:exon

AWJ20_2310
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: DAK1
locus tag: AWJ20_2310
so part of: sequence
location: <958231..>959997
location: region:958231-959997:1
so has part: feature:958231-959997:1:exon
subclass of: SO_0000010

30034208
type: Gene
SIO_000068: ncbigene

position:958231:1
position: 958231
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:959997:1
position: 959997
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:958231-959997:1:exon

AWJ20_2310
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: DAK1
locus tag: AWJ20_2310
product: Dak1p
transcript id: XM_018879249.1
SIO_010081: AWJ20_2310
subclass of: SO_0000673
so part of: AWJ20_2310
location: <958231..>959997
location: region:958231-959997:1
so has part: feature:958231-959997:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:958231-959997:1:exon

AWJ20_2310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: DAK1
locus tag: AWJ20_2310
inference: similar to AA sequence:KEGG_Orthology:K00863
note: Dihydroxyacetone kinase; required for detoxification of dihydroxyacetone (DHA); involved in stress adaptation; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004371 - glycerone kinase activity [Evidence IEA,IEA]; GO_function: GO:0004371 - glycerone kinase activity [Evidence IDA] [PMID 12401799]; GO_function: GO:0004371 - glycerone kinase activity [Evidence ISS] [PMID 9038161]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0050354 - triokinase activity [Evidence IEA]; GO_process: GO:0019588 - anaerobic glycerol catabolic process [Evidence IEA]; GO_process: GO:0097237 - cellular response to toxic substance [Evidence IMP] [PMID 12401799]; GO_process: GO:0019563 - glycerol catabolic process [Evidence ISS] [PMID 9038161]; GO_process: GO:0006071 - glycerol metabolic process [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]
codon start: 1
product: Dak1p
translation: MSTKHFFPNQNGLVVRALKGVASQNPSLGVLESDKVLFHLDHDSSKVSLLSGGGSGHEPAHSGYVGKGMLAAAVCGDVFASPNTKQIMNACKVVGSDDGYIFIVTNYTGDMLHFGLACEKIKSHGTKVALIKSADDVSVGRTMGGSVGRRGLSGTIVINKVLGGAAEAGSSFEVVEELGHAIASNIVTIGAGLDHCHVPGNSEEFGGLGPEECEIGLGIHNEPGVTRLDEIPPIESLVKSLLGYLLDQSDSDRSFVKIESTDKVALMINNLGGLSIIEQNAIVEVVLDKLSSEYGIVPIRVFAGHFMTSLNAPSFSITLLNITQSVTKGTSESKIIEYLDAPTDAVNWPSNHYKTSRPIDLKSQVKSLPKSDDNVEKRTLDLLVDPSVLESKLRTASNNLISAEPDLTKWDTKMGDGDCGKTLESGAMALLRSLDSGLASPGSIIDVLERIVDITEENMGGTLGAIFGIYFASFSSSLKHIVSTNPNSDALKILAQSANEALDNLRLHTAAKEGDRTVMDVLIPFCKALVSNYDLKEALEEAHQAAEKTKTLVPKLGRATYVGGVSEMTVFPPDPGAWALYEILKGIL
SIO_010081: AWJ20_2310
subclass of: SO_0000673
so part of: AWJ20_2310
location: 958231..959997
location: region:958231-959997:1
so has part: feature:958231-959997:1:exon

XP_018737182.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:958231-959997:1:exon

AWJ20_2311
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TPI1
locus tag: AWJ20_2311
so part of: sequence
location: <960344..>961111
location: region:960344-961111:1
so has part: feature:960344-961111:1:exon
subclass of: SO_0000010

30034209
type: Gene
SIO_000068: ncbigene

position:960344:1
position: 960344
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:961111:1
position: 961111
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:960344-961111:1:exon

AWJ20_2311
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TPI1
locus tag: AWJ20_2311
product: triose-phosphate isomerase TPI1
transcript id: XM_018879250.1
SIO_010081: AWJ20_2311
subclass of: SO_0000673
so part of: AWJ20_2311
location: <960344..>961111
location: region:960344-961111:1
so has part: feature:960344-961111:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:960344-961111:1:exon

AWJ20_2311
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TPI1
locus tag: AWJ20_2311
inference: similar to AA sequence:KEGG_Orthology:K01803
note: Triose phosphate isomerase, abundant glycolytic enzyme; mRNA half-life is regulated by iron availability; transcription is controlled by activators Reb1p, Gcr1p, and Rap1p through binding sites in the 5' non-coding region; inhibition of Tpi1p activity by PEP (phosphoenolpyruvate) stimulates redox metabolism in respiring cells; E104D mutation in human TPI causes a rare autosomal disease; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16962558]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0004807 - triose-phosphate isomerase activity [Evidence IEA,IEA]; GO_function: GO:0004807 - triose-phosphate isomerase activity [Evidence IDA] [PMID 236471]; GO_process: GO:0006094 - gluconeogenesis [Evidence IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IMP] [PMID 11329176]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006098 - pentose-phosphate shunt [Evidence IEA]
codon start: 1
product: triose-phosphate isomerase TPI1
translation: MPVIGVSLKTYMSIKDTVSFFEELKSIVATSKDAGVEFFVAPDMVSLGKIGAYIQENGRRDDYPQLAAQDCFWEDRGAYTGSVSPKSLKELGVQIVEVGHAERRAIFGETDEIVAKKAEAAFRNGLVPLLCVGEKVHDTVENAIDACVTQLRAVTNVISPDCPLLVAYEPVWAIGKEKPADSEYVRGVATGIKKELAGRVGKSRVLYGGSAGPGGLFQSLYPCVDGLFLGRFGHKPANVKAVLSEVIQAAQSGAK
SIO_010081: AWJ20_2311
subclass of: SO_0000673
so part of: AWJ20_2311
location: 960344..961111
location: region:960344-961111:1
so has part: feature:960344-961111:1:exon

XP_018737183.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:960344-961111:1:exon

AWJ20_2312
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2312
so part of: sequence
location: complement(<961621..>963468)
location: region:961621-963468:-1
so has part: feature:961621-963468:-1:exon
subclass of: SO_0000010

30034210
type: Gene
SIO_000068: ncbigene

position:961621:-1
position: 961621
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:963468:-1
position: 963468
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:961621-963468:-1:exon

AWJ20_2312
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2312
product: hypothetical protein
transcript id: XM_018879251.1
SIO_010081: AWJ20_2312
subclass of: SO_0000673
so part of: AWJ20_2312
location: complement(<961621..>963468)
location: region:961621-963468:-1
so has part: feature:961621-963468:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:961621-963468:-1:exon

AWJ20_2312
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2312
codon start: 1
product: hypothetical protein
translation: MTRQPYFRWLGPTAIAPPKDGTFRLLSVNLVSDEPDNGGKYVVVERQDKQSLYSKSSRSPTIPVREQIDTKAQSYAENLPPPPKSLYKLFNDKMANFLPYLPHDIFEERLADGVISECLLFAMASLAERMAANSRKEYDSIGEENDKSQDNTEGTDEISLAEKYAEAAKRLIIPHLSCPSVEIVFALLLIAYCEFGDDRDSGLWSWSGMAIRMCYDLGLQKANTNEPDSWFSRNVFWSVVCLDRLISCGTGRATTIPDSVIEYELQPRWVKDSDGKSRSDPFPYLCKLLLIVGKVSNYLNSCAESDAQKLMYNSKIGHPLSRSQIDMIEKFSAFQQEVSDFYTNLPPDLLFDVQNFQCFAKIKCSPVFLLLHIWNQALVLAVHQPSLVYPKCQLDITGLDQYPHAELTGSGAISIADMVTFADLIEPDSFLANPFLSQPIFMAACASLTLRFSLRAPYQSQPIYKLERTYNTCRQTLNRMETIWRGISWHSRTLDSLAASEPDVDLTINSKVYVTTKDLGVVRRASVDEATRDWLAGEIRGRQVDDIYGMFIAGTIDGGVGNNQYETSPSSTGTEPRSDGFHDIGNRLNENGMMLFDSPQPTSNTTLIEEIFKIF
SIO_010081: AWJ20_2312
subclass of: SO_0000673
so part of: AWJ20_2312
location: complement(961621..963468)
location: region:961621-963468:-1
so has part: feature:961621-963468:-1:exon

XP_018737184.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:961621-963468:-1:exon

AWJ20_2313
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2313
so part of: sequence
location: complement(<964835..>964906)
location: region:964835-964906:-1
so has part: feature:964835-964906:-1:exon
subclass of: SO_0000663

30034211
type: Gene
SIO_000068: ncbigene

position:964835:-1
position: 964835
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:964906:-1
position: 964906
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:964835-964906:-1:exon

AWJ20_2313
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_2313
product: tRNA-His
SIO_010081: AWJ20_2313
subclass of: SO_0000673
so part of: AWJ20_2313
location: complement(<964835..>964906)
location: region:964835-964906:-1
so has part: feature:964835-964906:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:964835-964906:-1:exon

AWJ20_2314
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2314
so part of: sequence
location: complement(<965405..>965476)
location: region:965405-965476:-1
so has part: feature:965405-965476:-1:exon
subclass of: SO_0000663

30034212
type: Gene
SIO_000068: ncbigene

position:965405:-1
position: 965405
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:965476:-1
position: 965476
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:965405-965476:-1:exon

AWJ20_2314
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_2314
product: tRNA-His
SIO_010081: AWJ20_2314
subclass of: SO_0000673
so part of: AWJ20_2314
location: complement(<965405..>965476)
location: region:965405-965476:-1
so has part: feature:965405-965476:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:965405-965476:-1:exon

AWJ20_2315
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SDS22
locus tag: AWJ20_2315
so part of: sequence
location: complement(<965639..>966403)
location: region:965639-966403:-1
so has part: feature:965639-966403:-1:exon
subclass of: SO_0000010

30034213
type: Gene
SIO_000068: ncbigene

position:965639:-1
position: 965639
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:966403:-1
position: 966403
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:965639-966403:-1:exon

AWJ20_2315
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SDS22
locus tag: AWJ20_2315
product: Sds22p
transcript id: XM_018879252.1
SIO_010081: AWJ20_2315
subclass of: SO_0000673
so part of: AWJ20_2315
location: complement(<965639..>966403)
location: region:965639-966403:-1
so has part: feature:965639-966403:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:965639-966403:-1:exon

AWJ20_2315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SDS22
locus tag: AWJ20_2315
inference: similar to AA sequence:KEGG_Orthology:K17550
note: Regulatory subunit of the type 1 protein phosphatase (PP1) Glc7p; whether it functions as a positive or negative regulator of Glc7p is controversial; involved in the regulation of Glc7p nuclear localization and function; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11801737]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0000164 - protein phosphatase type 1 complex [Evidence IDA] [PMID 10775415]; GO_function: GO:0071862 - protein phosphatase type 1 activator activity [Evidence IGI] [PMID 11801737]; GO_function: GO:0071862 - protein phosphatase type 1 activator activity [Evidence IGI] [PMID 18172024]; GO_function: GO:0004865 - protein serine/threonine phosphatase inhibitor activity [Evidence IGI,IMP] [PMID 17142459]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 11801737]; GO_process: GO:0051457 - maintenance of protein location in nucleus [Evidence IMP] [PMID 11801737]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]
codon start: 1
product: Sds22p
translation: MDGLEDLPEDLEELDLYDNRLTHVGHLDHFTPKMTTLDLSFNNIKHIKHLDHLTGLSSLYLCQNQISKIVGLDQLKNITNLELGANKIREIKNLDGLVNLEQLWLGKNKITKLENLGHLKKLKILSIQANRIVKLEGLEELESLEELYISDNGIEKIEGLDNNTKLTTLDVSSNRISELTNLRGLVNLEEFWASRNKISSFKNVEDELGKLPNLHTVYFEHNPLQLENKVTYRNKLRLALGPSLQQIDATYIRN
SIO_010081: AWJ20_2315
subclass of: SO_0000673
so part of: AWJ20_2315
location: complement(965639..966403)
location: region:965639-966403:-1
so has part: feature:965639-966403:-1:exon

XP_018737185.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:965639-966403:-1:exon

AWJ20_2316
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ACP1
locus tag: AWJ20_2316
so part of: sequence
location: complement(<969267..>969593)
location: region:969267-969593:-1
so has part: feature:969267-969593:-1:exon
subclass of: SO_0000010

30034214
type: Gene
SIO_000068: ncbigene

position:969267:-1
position: 969267
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:969593:-1
position: 969593
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:969267-969593:-1:exon

AWJ20_2316
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ACP1
locus tag: AWJ20_2316
product: Acp1p
transcript id: XM_018879253.1
SIO_010081: AWJ20_2316
subclass of: SO_0000673
so part of: AWJ20_2316
location: complement(<969267..>969593)
location: region:969267-969593:-1
so has part: feature:969267-969593:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:969267-969593:-1:exon

AWJ20_2316
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ACP1
locus tag: AWJ20_2316
inference: similar to AA sequence:KEGG_Orthology:K03955
note: Mitochondrial matrix acyl carrier protein; involved in biosynthesis of octanoate, which is a precursor to lipoic acid; activated by phosphopantetheinylation catalyzed by Ppt2p; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0070469 - respiratory chain [Evidence IEA]; GO_function: GO:0000036 - ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process [Evidence ISS] [PMID 8394042]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0009107 - lipoate biosynthetic process [Evidence IMP] [PMID 9187370]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]
codon start: 1
product: Acp1p
translation: MFRMNASLIAKRASAAVTCRAAGSAAVRRPAFVNMLAMSRSYSASASGLNQKDVEDRIIKVFRAFDKIEDASKITPTANFSTELGLDSLDTVEVIVAVEEEFGIEIPE
SIO_010081: AWJ20_2316
subclass of: SO_0000673
so part of: AWJ20_2316
location: complement(969267..969593)
location: region:969267-969593:-1
so has part: feature:969267-969593:-1:exon

XP_018737186.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:969267-969593:-1:exon

AWJ20_2317
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2317
so part of: sequence
location: complement(<971377..>973071)
location: region:971377-973071:-1
so has part: feature:971377-973071:-1:exon
subclass of: SO_0000010

30034215
type: Gene
SIO_000068: ncbigene

position:971377:-1
position: 971377
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:973071:-1
position: 973071
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:971377-973071:-1:exon

AWJ20_2317
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2317
product: Myosin-Vb
transcript id: XM_018879254.1
SIO_010081: AWJ20_2317
subclass of: SO_0000673
so part of: AWJ20_2317
location: complement(<971377..>973071)
location: region:971377-973071:-1
so has part: feature:971377-973071:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:971377-973071:-1:exon

AWJ20_2317
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2317
codon start: 1
product: Myosin-Vb
translation: MAHPIAPAGTAKPEPADFGGPRLVPRLSKPERPTGLVTSKKWVVPPRPKPGRKPGSKEGAKKRAVAAGAGGENGSGDSFTALREQLEKSRKENDELRNLVDEFRSTSRSGSPVSNVPTVSVSKSGIVEGTVEPRQEEVWDGVRLLNQSNDAPLEASSDCGFCDREGGCVCEDLGLKAGSSRTHVHEQDVITEKLESQRHNHSHNRTHNYGPHHDHSGNHDHNEHSAQAHVDVHNNVHTHSQINGHASRNGLLPGETDLNTLENGSGSRSLQSAVRHTHHPSALAQFDHFSPVKAVPLKRSPRRVGNNGTTNPIVKKFKRLGEPAQITLTTGTEIPANSKLVSETSEGTSPFEVGLSNTGFNAVEEADAKTSAHANPCGFCSDESPCLCADEREGRTTTPTTTSTTSSSNGAISSESRGSFSMSPKGTRHFNNSTTVSSPSSVSLPPVSSVTSRPPPYQQNVPSSSNPSLITPTGISTNPGSCTQCLSDPMSTLFCTSLSNVSAGSEVPPEKLGMTVTCSQAYQVLSRHQKFPTYDLGAIVSTLISHDGKVGVQSITQALRKLDT
SIO_010081: AWJ20_2317
subclass of: SO_0000673
so part of: AWJ20_2317
location: complement(971377..973071)
location: region:971377-973071:-1
so has part: feature:971377-973071:-1:exon

XP_018737187.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:971377-973071:-1:exon

AWJ20_2318
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2318
so part of: sequence
location: complement(<973386..>975245)
location: region:973386-975245:-1
so has part: feature:973386-975245:-1:exon
subclass of: SO_0000010

30034216
type: Gene
SIO_000068: ncbigene

position:973386:-1
position: 973386
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:975245:-1
position: 975245
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:973386-975245:-1:exon

AWJ20_2318
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2318
product: hypothetical protein
transcript id: XM_018879255.1
SIO_010081: AWJ20_2318
subclass of: SO_0000673
so part of: AWJ20_2318
location: complement(<973386..>975245)
location: region:973386-975245:-1
so has part: feature:973386-975245:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:973386-975245:-1:exon

AWJ20_2318
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2318
codon start: 1
product: hypothetical protein
translation: MNDTQQDIWRGSIMIVTNDATSDYSTPPFLNVTIEPLVDPSASANTGVEGSALNGGSASHGNTTTVESNKIYGEYGVSFWRFDLNLNLIDSEQRVTYSINAGSDSLGSSSPSPTETFYIPSRNQDMNIMFYSCNGFSLGVAPEKFKGQLWNDVLEQHENKYHFHVMLGGGDQLYCDKVKIATESVKKWSEEKNPFKKRTAPMQPEEKAEIDQFYLWHYISWFGLGYFYGPHGRTLQPGWPKALAKIPMINIFDDHDIIDGFGSYTDGIMKSPHFSGIGRAAFKYYLLFQHCVAPEEPTSKEPSWVMSPRPGPYMGEHARSVYARLGQSIAFYGLDCRTERSHHQVCEDATYDAMFSRINHEVKQSNGQIKHLVIMLGVPIAYPRMVWLERILTSDLLMPLKMLTRKGYFSGLSNEFDDGIEILDDLDDHWCARHHKKERNEFVSRMQAFSKSTGVRITILGGDVHLAGVGRFYSRKPVPPEKDYRHMLNIISSAIVNTPPPDKLADFLNKRNKIHHFGSDTDEDMVKIFPVDVDNSHRNNDRLLPRRNWCSIIATHGQGQARRAGQINSTGEPPVSNSRETLYPDLPGTLSVILHMEKNDQDPASVTIPYEVLVPPLEL
SIO_010081: AWJ20_2318
subclass of: SO_0000673
so part of: AWJ20_2318
location: complement(973386..975245)
location: region:973386-975245:-1
so has part: feature:973386-975245:-1:exon

XP_018737188.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:973386-975245:-1:exon

AWJ20_2319
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SST2
locus tag: AWJ20_2319
so part of: sequence
location: complement(<976463..>978091)
location: region:976463-978091:-1
so has part: feature:976463-978091:-1:exon
subclass of: SO_0000010

30034217
type: Gene
SIO_000068: ncbigene

position:976463:-1
position: 976463
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:978091:-1
position: 978091
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:976463-978091:-1:exon

AWJ20_2319
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SST2
locus tag: AWJ20_2319
product: GTPase-activating protein SST2
transcript id: XM_018879256.1
SIO_010081: AWJ20_2319
subclass of: SO_0000673
so part of: AWJ20_2319
location: complement(<976463..>978091)
location: region:976463-978091:-1
so has part: feature:976463-978091:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:976463-978091:-1:exon

AWJ20_2319
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SST2
locus tag: AWJ20_2319
codon start: 1
product: GTPase-activating protein SST2
translation: MVLSLRLSSKPQKEPSLFFARSFPFSFSVSDALKAMKNMSISVDNGSTVTIIKCGIPDNGEYFLDKFLTAKLLHCPGSRTRETIKASVLLQPTAKGFHFVERYCRRNGISNDNVSEMLLSEYNSMQCICLDRHHLTGEIMRSEGIVKLLFQRFMGPSPNTYDASNPPDEIAINNLSRIYGQKVELSLHSPISLIFETGNMDQRVSPYAHRYFTHPDSDSLMQYYVSSKGVRLHQTREFYDKRKSRVSVDFCVSGKAAVQWLSDCTDTIKPSESFALASLFLKYKLLEPITLEPSISGSSDNIVVSRQAYYQLSDRGRRMVFWDRDHFFRHKSQVEQTEEYEEDEFYTPGSSFVMDEDDESDEVSNSKHSSPGRNNNTNTSAITLQMILSDPAMCHLFREYLEENLCQENLLFYKDMEKISDMYKHLKLLKKLPNDKEPIESYSTTILSAIYGVLGRYFSPRAPYGLNIDAQIKRMIIEEMTTNQSLTNDNKNNNNKHETSALVDRMEPLLEKARELAVKMMSQDSLQKFLRSSYYLSAVRSC
SIO_010081: AWJ20_2319
subclass of: SO_0000673
so part of: AWJ20_2319
location: complement(976463..978091)
location: region:976463-978091:-1
so has part: feature:976463-978091:-1:exon

XP_018737189.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:976463-978091:-1:exon

AWJ20_2320
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MKK2
locus tag: AWJ20_2320
so part of: sequence
location: complement(<978777..>980540)
location: region:978777-980540:-1
so has part: feature:978777-980540:-1:exon
subclass of: SO_0000010

30034219
type: Gene
SIO_000068: ncbigene

position:978777:-1
position: 978777
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:980540:-1
position: 980540
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:978777-980540:-1:exon

AWJ20_2320
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MKK2
locus tag: AWJ20_2320
product: putative mitogen-activated protein kinase kinase MKK2
transcript id: XM_018879257.1
SIO_010081: AWJ20_2320
subclass of: SO_0000673
so part of: AWJ20_2320
location: complement(<978777..>980540)
location: region:978777-980540:-1
so has part: feature:978777-980540:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:978777-980540:-1:exon

AWJ20_2320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MKK2
locus tag: AWJ20_2320
inference: similar to AA sequence:KEGG_Orthology:K08294
codon start: 1
product: putative mitogen-activated protein kinase kinase MKK2
translation: MSAPPLIRPPPKPASRMKLPGLQIPNSQSRSMSPVISPPKDEDISMSDSSSTTLLSSGLPTATPQYHNPTLATTTAKSIYTASASTSTPSLPSIITSDHQSIASLPMPVPRKSAHPFSHSNNSSSTGLHLSLNTNSETYGSYGSYGVSSTGDVTGTSNIGGPYGSYGSYGSASTSLIVPPENYPSNRSPLSAASGLFSAEVLAAVRVGDDSSSLNDSDVDHSMTVDSKSSSSGTSRLTATDSLGANGGLSTSVSSNSNSGYTTPNGSYLLSQSTSNKSLSSEYDVEDLDEEGWAMVARQGDIVDMGRLGEGSGGSVSRCRLKNGKTIFALKEITTNPNPELQKQILRELQFNRSCNSPHIVKYYGTFLSNEFSSIFIAMEYCGGGSLEAIYKRVKARNGRIGEKVLGKIAEGVLSGLSYLHERKIIHRDIKPQNILLDAKGQVKLCDFGVSGEVVDSLATTFTGTSYYMAPERIQGQPYTVTSDVWSLGLTLMEVAQHRFPFLTEGHDPLMPIELLTFIVNMPAPELQDEPQEGIKWSNSFRHFLSCCLEKDPKKRASPRQMLSHPWMVGQRSKTVRMDKFVKECWN
SIO_010081: AWJ20_2320
subclass of: SO_0000673
so part of: AWJ20_2320
location: complement(978777..980540)
location: region:978777-980540:-1
so has part: feature:978777-980540:-1:exon

XP_018737190.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:978777-980540:-1:exon

AWJ20_2321
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: NAS6
locus tag: AWJ20_2321
so part of: sequence
location: <984023..>984829
location: region:984023-984829:1
so has part: feature:984023-984829:1:exon
subclass of: SO_0000010

30034220
type: Gene
SIO_000068: ncbigene

position:984023:1
position: 984023
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:984829:1
position: 984829
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:984023-984829:1:exon

AWJ20_2321
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: NAS6
locus tag: AWJ20_2321
product: Nas6p
transcript id: XM_018879258.1
SIO_010081: AWJ20_2321
subclass of: SO_0000673
so part of: AWJ20_2321
location: <984023..>984829
location: region:984023-984829:1
so has part: feature:984023-984829:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:984023-984829:1:exon

AWJ20_2321
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: NAS6
locus tag: AWJ20_2321
inference: similar to AA sequence:KEGG_Orthology:K06694
note: Assembly chaperone for the 19S proteasome regulatory particle base; proteasome-interacting protein involved in the assembly of the base subcomplex of the 19S proteasomal regulatory particle (RP); ortholog of human oncoprotein gankyrin, which interacts with the Rb tumor suppressor and CDK4/6; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 19446323]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19446323]; GO_component: GO:0005838 - proteasome regulatory particle [Evidence IDA] [PMID 11029046]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IGI] [PMID 19412159]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IGI,IMP] [PMID 19446322]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IGI,IMP] [PMID 19446323]; GO_process: GO:0006508 - proteolysis [Evidence IPI,ISS] [PMID 11029046]
codon start: 1
product: Nas6p
translation: MTESHGNSEASQAGKPLNEDSTPLALSENAESWPLHDAARDGKALLVKSILAENGKLVNSKDQDGRTPLFWAISTGGAEVTSTILKFVRDTRPRGFDLEEGDEAGWTVVHISASTGQLDVIKQLVDIAKTVFSDDLDLDVQTKRGQTPLHFAVSKSHIDVVKYLLEKGASPRTKDALNQNPLHRAAAVGSLPIVKLLIAAKTPLNATDRSGWTPLHHALAEGHGDVAIELISAGADQDRADAEGHTPMDVVVDDKVKKYVQVALSKQH
SIO_010081: AWJ20_2321
subclass of: SO_0000673
so part of: AWJ20_2321
location: 984023..984829
location: region:984023-984829:1
so has part: feature:984023-984829:1:exon

XP_018737191.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:984023-984829:1:exon

AWJ20_2322
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RPL18A
locus tag: AWJ20_2322
so part of: sequence
location: complement(<985327..>985887)
location: region:985327-985887:-1
so has part: feature:985327-985887:-1:exon
subclass of: SO_0000010

30034221
type: Gene
SIO_000068: ncbigene

position:985327:-1
position: 985327
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:985887:-1
position: 985887
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:985327-985887:-1:exon

AWJ20_2322
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RPL18A
locus tag: AWJ20_2322
product: ribosomal 60S subunit protein L18A
transcript id: XM_018879259.1
SIO_010081: AWJ20_2322
subclass of: SO_0000673
so part of: AWJ20_2322
location: complement(<985327..>985887)
location: region:985327-985887:-1
so has part: feature:985327-985887:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:985327-985887:-1:exon

AWJ20_2322
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RPL18A
locus tag: AWJ20_2322
inference: similar to AA sequence:KEGG_Orthology:K02883
note: Ribosomal 60S subunit protein L18A; intron of RPL18A pre-mRNA forms stem-loop structures that are a target for Rnt1p cleavage leading to degradation; homologous to mammalian ribosomal protein L18, no bacterial homolog; RPL18A has a paralog, RPL18B, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 11983894]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 11983894]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 11983894]; GO_process: GO:0006412 - translation [Evidence IEA]
codon start: 1
product: ribosomal 60S subunit protein L18A
translation: MGKDQFSKEHIRNSHRTAPKSDNVYLSLLVKLYRFLARRTDSNFNKVILKSLFLSKINRPPVSVSRITRALKQKGAENKTIVVVGTVTDDNRLFEVPKTTVAALRFTAGARARIVKAGGEAITLDQLARRAPTGQNTLILRGPRASREAVRHFGMGPHKGKAPRIQSKGRKFERARGRRRSRGFKV
SIO_010081: AWJ20_2322
subclass of: SO_0000673
so part of: AWJ20_2322
location: complement(985327..985887)
location: region:985327-985887:-1
so has part: feature:985327-985887:-1:exon

XP_018737192.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:985327-985887:-1:exon

AWJ20_2323
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SMI1
locus tag: AWJ20_2323
so part of: sequence
location: complement(<988923..>990764)
location: region:988923-990764:-1
so has part: feature:988923-990764:-1:exon
subclass of: SO_0000010

30034222
type: Gene
SIO_000068: ncbigene

position:988923:-1
position: 988923
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:990764:-1
position: 990764
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:988923-990764:-1:exon

AWJ20_2323
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SMI1
locus tag: AWJ20_2323
product: Smi1p
transcript id: XM_018879260.1
SIO_010081: AWJ20_2323
subclass of: SO_0000673
so part of: AWJ20_2323
location: complement(<988923..>990764)
location: region:988923-990764:-1
so has part: feature:988923-990764:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:988923-990764:-1:exon

AWJ20_2323
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SMI1
locus tag: AWJ20_2323
note: Protein involved in the regulation of cell wall synthesis; proposed to be involved in coordinating cell cycle progression with cell wall integrity; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 10206705]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 10206705]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0042546 - cell wall biogenesis [Evidence IEA]; GO_process: GO:0032995 - regulation of fungal-type cell wall biogenesis [Evidence IGI,IMP] [PMID 10206705]; GO_process: GO:0007346 - regulation of mitotic cell cycle [Evidence IGI] [PMID 11410349]; GO_process: GO:0007346 - regulation of mitotic cell cycle [Evidence IMP] [PMID 12823808]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]
codon start: 1
product: Smi1p
translation: MDKIFSSVQSFLHSVTTNDRYASYESQYRSSPNGRGPGASTKYRRTPLGVTGNSVHDEIDGGSGSGTPPNGQNGPYGYRNSSSTSLDGPNSRNGSNTNLASSSTTSLNRGPYTPGMRSAQMGNGGNIPLQDYSDGIPAPPAAALSWKRIDRWVDANYPELYDQLSYPATSADLNELESDLDCTLPLEVRDSYMVHDGQERGGRPTGLFFNICILDLEGIVEEWTHWKNTAIRLNNVVRSQRQQKQALSSSSAAASSSSSSQQQLRSVSASSSSSSSALVPPHMKQQAQQTPQQIQQQQQHYKNTLNWIQRQESVPEGAIQPVYAHPAWIPLAKDFEGNNIAVDLAPGKKGRWGQVILFGRDFDRKYVIAPSWGAFLASFADDLEAGDHSIDEDLEEGSLMFRAPNGRLIPYFDVLKSRVERSVRLARKQQGIQSPVIGSNGAGSMPGTRISRPSTPGHHGASSNSTITNGSTGTGANKANGSAAGSAPGRNLSSPKGQNLISPFQSTTNLATPTSEPSESQSESKENTEELSEPAAETKTEDKPETKTDSEPATKSNDKPEPESKKESEADENPETTATESTESKKDTSASASASASDDEVDMLEDELTEVQI
SIO_010081: AWJ20_2323
subclass of: SO_0000673
so part of: AWJ20_2323
location: complement(988923..990764)
location: region:988923-990764:-1
so has part: feature:988923-990764:-1:exon

XP_018737193.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:988923-990764:-1:exon

AWJ20_2324
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RPS15
locus tag: AWJ20_2324
so part of: sequence
location: <994160..>994438
location: region:994160-994438:1
so has part: feature:994160-994438:1:exon
subclass of: SO_0000010

30034223
type: Gene
SIO_000068: ncbigene

position:994160:1
position: 994160
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:994438:1
position: 994438
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:994160-994438:1:exon

AWJ20_2324
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RPS15
locus tag: AWJ20_2324
product: ribosomal 40S subunit protein S15
transcript id: XM_018879261.1
SIO_010081: AWJ20_2324
subclass of: SO_0000673
so part of: AWJ20_2324
location: <994160..>994438
location: region:994160-994438:1
so has part: feature:994160-994438:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:994160-994438:1:exon

AWJ20_2324
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RPS15
locus tag: AWJ20_2324
inference: similar to AA sequence:KEGG_Orthology:K02958
note: Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S15 and bacterial S19; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence NAS] [PMID 9559554]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_component: GO:0015935 - small ribosomal subunit [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence NAS] [PMID 9559554]; GO_process: GO:0002181 - cytoplasmic translation [Evidence NAS] [PMID 9559554]; GO_process: GO:0006407 - rRNA export from nucleus [Evidence IMP] [PMID 15167894]; GO_process: GO:0006407 - rRNA export from nucleus [Evidence IMP] [PMID 16246728]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]
codon start: 1
product: ribosomal 40S subunit protein S15
translation: MRFVKKLRAAKLAAGPNEKPAVVKTHLRNMLVLPEMIGSVIGVYNGKVFNQVEIKPEMVGHYLGEFSITYRPVAHKRPGAGSTKDSRFIPLK
SIO_010081: AWJ20_2324
subclass of: SO_0000673
so part of: AWJ20_2324
location: 994160..994438
location: region:994160-994438:1
so has part: feature:994160-994438:1:exon

XP_018737194.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:994160-994438:1:exon

AWJ20_2325
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MTC6
locus tag: AWJ20_2325
so part of: sequence
location: complement(<994715..>996325)
location: region:994715-996325:-1
so has part: feature:994715-996325:-1:exon
subclass of: SO_0000010

30034224
type: Gene
SIO_000068: ncbigene

position:994715:-1
position: 994715
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:996325:-1
position: 996325
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:994715-996325:-1:exon

AWJ20_2325
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MTC6
locus tag: AWJ20_2325
product: Mtc6p
transcript id: XM_018879262.1
SIO_010081: AWJ20_2325
subclass of: SO_0000673
so part of: AWJ20_2325
location: complement(<994715..>996325)
location: region:994715-996325:-1
so has part: feature:994715-996325:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:994715-996325:-1:exon

AWJ20_2325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MTC6
locus tag: AWJ20_2325
note: hypothetical protein; mtc6 is synthetically sick with cdc13-1; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]
codon start: 1
product: Mtc6p
translation: MSSFSLDAFWSNTNSQWQLCPQPFPQGVSTSGQIYALDDGIKCQDNVTLDSVYSVIATYIQQTETSAIATNLLTLRLNLNQLNQSIDVENNVRGDYVLSTNISSIFGPRVYTPLDLENDRKNGVVSNIDEGNNFPPLHYFLLSINKRILVLADDSQLIQSISTGMSSTSSSSSTATSISTTGSGKHTGTSSSTTTTTTTTSTPTPSFSQNINGDYQVLFVNSNITFQEEQSLTLTNDLVNTCANNGDQPSQQDLINHINETSMIPFRAVFDTPDFPFTDVTLGIISQCGYTPMLNSSSSLTDPMSNSAQLTPQILVDVVNNSFWSWAPGEPNTNKTNASKPKSITDPVALQCAVITPEGWKVANCYEPFPVMCRGNDSNFDWIATGNKSTYFDAPQSCPKGTNFSVPRTSLENLAARSVLQQEVPAPKPSSDSSDDSNSSPGGSINVPAAWIDFNTIAVDECWVTGGPFSACPYLQIPTTNRNGVALLSIAAVVAFVLLMAMILLNFRRIPLRRNQARWRRLINKFAEQEYEGVPL
SIO_010081: AWJ20_2325
subclass of: SO_0000673
so part of: AWJ20_2325
location: complement(994715..996325)
location: region:994715-996325:-1
so has part: feature:994715-996325:-1:exon

XP_018737195.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:994715-996325:-1:exon

AWJ20_2326
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PHB2
locus tag: AWJ20_2326
so part of: sequence
location: <999246..>1000166
location: region:999246-1000166:1
so has part: feature:999246-1000166:1:exon
subclass of: SO_0000010

30034225
type: Gene
SIO_000068: ncbigene

position:999246:1
position: 999246
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1000166:1
position: 1000166
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:999246-1000166:1:exon

AWJ20_2326
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PHB2
locus tag: AWJ20_2326
product: prohibitin subunit PHB2
transcript id: XM_018879263.1
SIO_010081: AWJ20_2326
subclass of: SO_0000673
so part of: AWJ20_2326
location: <999246..>1000166
location: region:999246-1000166:1
so has part: feature:999246-1000166:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:999246-1000166:1:exon

AWJ20_2326
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PHB2
locus tag: AWJ20_2326
inference: similar to AA sequence:KEGG_Orthology:K17081
note: Subunit of the prohibitin complex (Phb1p-Phb2p); prohibitin is a 1.2 MDa ring-shaped inner mitochondrial membrane chaperone that stabilizes newly synthesized proteins; determinant of replicative life span; involved in mitochondrial segregation; prohibitin deficiency induces a mitochondrial unfolded protein response (mtUPR); GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 10835343]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 9632789]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 9259555]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence IMP] [PMID 12882345]; GO_process: GO:0045861 - negative regulation of proteolysis [Evidence IMP,IPI] [PMID 10207067]; GO_process: GO:0006457 - protein folding [Evidence IDA,IPI,ISS] [PMID 10835343]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 12882345]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 9259555]
codon start: 1
product: prohibitin subunit PHB2
translation: MSGQREAWEKFAKAVQQQARKGAGGGAGGGVPPKGVFAGVTGIFLLGVGALAINASLFNVDGGHRAIIYSRFGGIQPQIYQEGTHFAIPWFQKPIIYNVRARPRNVASLTGTKDLQMVNITCRVLSRPRVESLATIFRTLGTDYDERVLPSIVNEVLKSVVAQFNASQLITQREKVSRMVRDNLVKRASKFNILLDDVSLTYMTFSPEFTAAVEAKQIAQQEAQRAAFIVDRAKQEKQGTIVKAQGEARSAELIGEAIKKSGDYVELKRLDTAREIAEILSKSGNRVMLDNNSLLLNVASDYRTKK
SIO_010081: AWJ20_2326
subclass of: SO_0000673
so part of: AWJ20_2326
location: 999246..1000166
location: region:999246-1000166:1
so has part: feature:999246-1000166:1:exon

XP_018737196.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:999246-1000166:1:exon

AWJ20_2327
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ALT1
locus tag: AWJ20_2327
so part of: sequence
location: complement(<1003176..>1004927)
location: region:1003176-1004927:-1
so has part: feature:1003176-1004927:-1:exon
subclass of: SO_0000010

30034226
type: Gene
SIO_000068: ncbigene

position:1003176:-1
position: 1003176
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1004927:-1
position: 1004927
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1003176-1004927:-1:exon

AWJ20_2327
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ALT1
locus tag: AWJ20_2327
product: alanine transaminase ALT1
transcript id: XM_018879264.1
SIO_010081: AWJ20_2327
subclass of: SO_0000673
so part of: AWJ20_2327
location: complement(<1003176..>1004927)
location: region:1003176-1004927:-1
so has part: feature:1003176-1004927:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1003176-1004927:-1:exon

AWJ20_2327
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ALT1
locus tag: AWJ20_2327
inference: similar to AA sequence:KEGG_Orthology:K00814
note: Alanine transaminase (glutamic pyruvic transaminase); involved in alanine biosynthesis and catabolism; TOR1-independent role in determining chronological lifespan; expression is induced in the presence of alanine; repression is mediated by Nrg1p; ALT1 has a paralog, ALT2, that arose from the whole genome duplication; Alt2p is catalytically inactive; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004021 - L-alanine:2-oxoglutarate aminotransferase activity [Evidence IEA]; GO_function: GO:0004021 - L-alanine:2-oxoglutarate aminotransferase activity [Evidence IMP] [PMID 19396236]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0042853 - L-alanine catabolic process [Evidence IEA]; GO_process: GO:0006523 - alanine biosynthetic process [Evidence IMP] [PMID 19396236]; GO_process: GO:0006524 - alanine catabolic process [Evidence IMP] [PMID 19396236]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0001300 - chronological cell aging [Evidence IMP] [PMID 23527786]
codon start: 1
product: alanine transaminase ALT1
translation: MTIAAVISRQGGGLKYGLKCSRVDSVIRSRLSCLSFVSNNSLVSFYSTSSASTSGFTSTSPSTSVIASSNTATTSALFSASSRSTRSYRARNIANSRNFTTTTSPKMPLTLDKLNAHVVDAKYAVRGRLALRAEELRNQLKTNPKSLPFTEVINANIGNPQQLDQQPLTFFRQVLALVQYPQLIKHESCAKLFPRDVIERAMVLLKEIGSVGSYSHSKGVPYIRKSIAESIERRDGFPADPESIYLTTGASAGVERLLHILSHSENSAFLIPIPQYPLYSATLTLVNSNAVQYYLDESKDWGTDANKMRDIIEEAKREGLDLKAMVVINPGNPTGSVLTEQNIEEIIDIAAKDHIVIIADEVYQTNVYKGEFISFKKVLRKMQQKDPQKYNHVELASLHSTSKGMVGECGQRGGYMELVGFHPDVEETIYKLASISLCPPVTGQVLTELMVNPPRAGDPSYEEYSQEFNSIYNTLKDRSTALYEAFKQMEGVTCNPPEGAMYLFPRITIPDKAIEAANKAGYSMADEYYCTLLLEKTGICVIPGSGFGQEPGTWHFRTTFLAPGTEYANRFVQFHKWFMDEYR
SIO_010081: AWJ20_2327
subclass of: SO_0000673
so part of: AWJ20_2327
location: complement(1003176..1004927)
location: region:1003176-1004927:-1
so has part: feature:1003176-1004927:-1:exon

XP_018737197.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1003176-1004927:-1:exon

AWJ20_2328
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: FES1
locus tag: AWJ20_2328
so part of: sequence
location: <1007175..>1008038
location: region:1007175-1008038:1
so has part: feature:1007175-1008038:1:exon
subclass of: SO_0000010

30034227
type: Gene
SIO_000068: ncbigene

position:1007175:1
position: 1007175
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1008038:1
position: 1008038
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1007175-1008038:1:exon

AWJ20_2328
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: FES1
locus tag: AWJ20_2328
product: Fes1p
transcript id: XM_018879265.1
SIO_010081: AWJ20_2328
subclass of: SO_0000673
so part of: AWJ20_2328
location: <1007175..>1008038
location: region:1007175-1008038:1
so has part: feature:1007175-1008038:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1007175-1008038:1:exon

AWJ20_2328
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: FES1
locus tag: AWJ20_2328
note: Hsp70 (Ssa1p) nucleotide exchange factor; required for the release of misfolded proteins from the Hsp70 system to the Ub-proteasome machinery for destruction; cytosolic homolog of Sil1p, which is the nucleotide exchange factor for BiP (Kar2p) in the endoplasmic reticulum; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12052876]; GO_component: GO:0022626 - cytosolic ribosome [Evidence IPI] [PMID 12052876]; GO_function: GO:0000774 - adenyl-nucleotide exchange factor activity [Evidence IDA,IPI] [PMID 12052876]; GO_process: GO:0071629 - cytoplasm-associated proteasomal ubiquitin-dependent protein catabolic process [Evidence IDA,IMP] [PMID 23530227]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IMP] [PMID 12052876]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]
codon start: 1
product: Fes1p
translation: MEKLLKWSIESASYDPNSGKEAPAKPDPELLAQLFGAKDEPTLMKEAIQVAINKENSLEDRETALDNFEMLIENLDNANNIENIGLWPPILQLVADSEPTIRKMACWIIGTATQNNPKTQEAFVAKDGSLKQLLDLVTVSSPAGEELEVVYKAIYALSSVLGHCPQAYEKFEQADGWSILAKLLSEENHNSKLQFRSLSLVHSVSHIEPVGDKFVQLRKTGTITSLIEILKQSTQNVQSQEKVLHILGTLQTASFDFTPEEKSQIVAVRKSLIASEVIQPDEYHFSA
SIO_010081: AWJ20_2328
subclass of: SO_0000673
so part of: AWJ20_2328
location: 1007175..1008038
location: region:1007175-1008038:1
so has part: feature:1007175-1008038:1:exon

XP_018737198.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1007175-1008038:1:exon

AWJ20_2329
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2329
so part of: sequence
location: <1008387..>1009376
location: region:1008387-1009376:1
so has part: feature:1008387-1009376:1:exon
subclass of: SO_0000010

30034228
type: Gene
SIO_000068: ncbigene

position:1008387:1
position: 1008387
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1009376:1
position: 1009376
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1008387-1009376:1:exon

AWJ20_2329
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2329
product: hypothetical protein
transcript id: XM_018879266.1
SIO_010081: AWJ20_2329
subclass of: SO_0000673
so part of: AWJ20_2329
location: <1008387..>1009376
location: region:1008387-1009376:1
so has part: feature:1008387-1009376:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1008387-1009376:1:exon

AWJ20_2329
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2329
codon start: 1
product: hypothetical protein
translation: MSEQNPGQPSAELQRAYEANIRLSTQFYNADSQLSGDDRAKLANTFWNQSVWLPLGSIPFLIAGIQGPRIAARMGYLGKGKNAGRGLSVFTGLFGLILGSRISQGVVYNYGQSSLSQSPNAQTAFTILGQYPPQIGLAYYRRTARDASLAMPDPSTIDWRKNPSFPLNLAVHRSELPNASSRTPGRPGRPNEVQTSYPSIQSPKQTDNETSDSSPFDSEDNKENSEAGRGGQMSSWDRIRAANGNASRSDGTNGGGWDAIRRGDRPAPNRVNSDRGTFNDEPRIIPPPVSRIHPESELESQQEFDLEVERERLGQGVADDFSESEKKWQ
SIO_010081: AWJ20_2329
subclass of: SO_0000673
so part of: AWJ20_2329
location: 1008387..1009376
location: region:1008387-1009376:1
so has part: feature:1008387-1009376:1:exon

XP_018737199.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1008387-1009376:1:exon

AWJ20_2330
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2330
so part of: sequence
location: <1011870..>1012748
location: region:1011870-1012748:1
so has part: feature:1011870-1012748:1:exon
subclass of: SO_0000010

30034230
type: Gene
SIO_000068: ncbigene

position:1011870:1
position: 1011870
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1012748:1
position: 1012748
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1011870-1012748:1:exon

AWJ20_2330
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2330
product: aldo-keto reductase superfamily protein
transcript id: XM_018879267.1
SIO_010081: AWJ20_2330
subclass of: SO_0000673
so part of: AWJ20_2330
location: <1011870..>1012748
location: region:1011870-1012748:1
so has part: feature:1011870-1012748:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1011870-1012748:1:exon

AWJ20_2330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2330
note: NADPH-dependent alpha-keto amide reductase; reduces aromatic alpha-keto amides, aliphatic alpha-keto esters, and aromatic alpha-keto esters; member of the aldo-keto reductase (AKR) family; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004033 - aldo-keto reductase (NADP) activity [Evidence IDA] [PMID 17140678]; GO_function: GO:0051268 - alpha-keto amide reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0051269 - alpha-keto ester reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0043603 - cellular amide metabolic process [Evidence IDA] [PMID 15564669]; GO_process: GO:0006725 - cellular aromatic compound metabolic process [Evidence IDA] [PMID 16268655]; GO_process: GO:0042180 - cellular ketone metabolic process [Evidence IDA] [PMID 17140678]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]
codon start: 1
product: aldo-keto reductase superfamily protein
translation: MTSAAALKTFTLSNGIKIPSIAAGFGTKWASRHRPEQKEDELDPGVIQGVKDAIAAGIYHIDGAEVYGTEGEIGVAISESGVKREDLYITTKIMKNVTDPIAALKTSLTKLKTDYVDLYLIHAPFFFDNLEEVWKGLETLHKEGKAKSIGVSNFKVEHLERILKVAEIKPVINQIEFHPYLQNQSPGIVEFSQKHGVLIEAYSPLGPIKEKGPLDPILEDLSKKYSKTPAQIIIRWTLQRNVLPVTASAKPDRLKEANEVFDFTLTEEEVSKITEVGNSHEKRFFWTDGKYF
SIO_010081: AWJ20_2330
subclass of: SO_0000673
so part of: AWJ20_2330
location: 1011870..1012748
location: region:1011870-1012748:1
so has part: feature:1011870-1012748:1:exon

XP_018737200.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1011870-1012748:1:exon

AWJ20_2331
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: DAL4
locus tag: AWJ20_2331
so part of: sequence
location: complement(<1012839..>1014503)
location: region:1012839-1014503:-1
so has part: feature:1012839-1014503:-1:exon
subclass of: SO_0000010

30034231
type: Gene
SIO_000068: ncbigene

position:1012839:-1
position: 1012839
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1014503:-1
position: 1014503
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1012839-1014503:-1:exon

AWJ20_2331
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: DAL4
locus tag: AWJ20_2331
product: Dal4p
transcript id: XM_018879268.1
SIO_010081: AWJ20_2331
subclass of: SO_0000673
so part of: AWJ20_2331
location: complement(<1012839..>1014503)
location: region:1012839-1014503:-1
so has part: feature:1012839-1014503:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1012839-1014503:-1:exon

AWJ20_2331
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: DAL4
locus tag: AWJ20_2331
inference: similar to AA sequence:KEGG_Orthology:K03457
note: Allantoin permease; expression sensitive to nitrogen catabolite repression and induced by allophanate, an intermediate in allantoin degradation; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence ISS] [PMID 1293888]; GO_function: GO:0005274 - allantoin uptake transmembrane transporter activity [Evidence ISS] [PMID 1293888]; GO_function: GO:0005274 - allantoin uptake transmembrane transporter activity [Evidence IMP] [PMID 385448]; GO_function: GO:0015205 - nucleobase transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0000256 - allantoin catabolic process [Evidence IMP] [PMID 385448]; GO_process: GO:0015720 - allantoin transport [Evidence IMP] [PMID 3549700]; GO_process: GO:0015720 - allantoin transport [Evidence IMP] [PMID 385448]; GO_process: GO:0015851 - nucleobase transport [Evidence IEA]; GO_process: GO:0006144 - purine nucleobase metabolic process [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]
codon start: 1
product: Dal4p
translation: MSGLRNRVSKAASTVKEYATSKKKWALEKQTSSLAPEKVWTNIDNDVTPLSRRTWTTWTVLGFWFSDGLNIQGWESPSSVIAVGLTWREALICNAFGMLIIVVPLTLNGAIGSFLHVPFPIAVRSAFGYRFGKFAVIVRMVTALFWHSIQTYSGSLAFMLCIIAIWPSFLNVPNHIPESVGITTQQMVCQFLFWSIQLPILLISPHKIKWFFILKAIMVTFCCIGVAAAMCSIAGDTGAIFHQEPKVHGSKKAWLILNCMMSSAGGWATMATNIPDFTRYMRGTRGQWWQGLFLPVISLFLAAMAILATSASGVIFRTYIWDPTQLPLKWTGPGGRAGMFFVGLSWAIAQIGTNLTANVITAANDLSSLCPKYINIRRGAIIVTVIGGWIMQPWKIISSAQSLLTFMSGLAVFLAPIAAMLATDFWLVKRKCIDVAALYDPDGIYKYWHGMNWRALVSFLIGLGPNLPGLAKAVSPGLNISGGILHVYDINYFYGFYTTALVYFLLSYFWPAKETVIPAPMLADGIIYGVDPSHDSEEDTVEKVSYVTNTQEKV
SIO_010081: AWJ20_2331
subclass of: SO_0000673
so part of: AWJ20_2331
location: complement(1012839..1014503)
location: region:1012839-1014503:-1
so has part: feature:1012839-1014503:-1:exon

XP_018737201.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1012839-1014503:-1:exon

AWJ20_2332
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: DAL81
locus tag: AWJ20_2332
so part of: sequence
location: <1014919..>1017123
location: region:1014919-1017123:1
so has part: feature:1014919-1017123:1:exon
subclass of: SO_0000010

30034232
type: Gene
SIO_000068: ncbigene

position:1014919:1
position: 1014919
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1017123:1
position: 1017123
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1014919-1017123:1:exon

AWJ20_2332
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: DAL81
locus tag: AWJ20_2332
product: Dal81p
transcript id: XM_018879269.1
SIO_010081: AWJ20_2332
subclass of: SO_0000673
so part of: AWJ20_2332
location: <1014919..>1017123
location: region:1014919-1017123:1
so has part: feature:1014919-1017123:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1014919-1017123:1:exon

AWJ20_2332
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: DAL81
locus tag: AWJ20_2332
note: Positive regulator of genes in multiple nitrogen degradation pathways; contains DNA binding domain but does not appear to bind the dodecanucleotide sequence present in the promoter region of many genes involved in allantoin catabolism; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 20581295]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0001128 - RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly [Evidence IDA,IMP] [PMID 21515579]; GO_function: GO:0001190 - RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription [Evidence IPI] [PMID 10906145]; GO_function: GO:0001190 - RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription [Evidence IMP] [PMID 17603098]; GO_function: GO:0001135 - RNA polymerase II transcription factor recruiting transcription factor activity [Evidence IDA,IMP] [PMID 21515579]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0001080 - nitrogen catabolite activation of transcription from RNA polymerase II promoter [Evidence IPI] [PMID 10906145]; GO_process: GO:0001080 - nitrogen catabolite activation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 7899074]; GO_process: GO:1901717 - positive regulation of gamma-aminobutyric acid catabolic process [Evidence IMP] [PMID 2406136]; GO_process: GO:1901714 - positive regulation of urea catabolic process [Evidence IMP] [PMID 2406136]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_…
codon start: 1
product: Dal81p
translation: MISDRGFRPKRACEICKKRKVRCFLSDANASICRLCELYGRNCTFVQNNSAESKVVKGRIRQSKTSSIPGSSILSLGGVTNGKVNNVIAEGKIDRQDDFQESDIQPESKPDDELQAMPVAVDLSAEANVEPIPDSPLDIFQGWFMNNSNPFPVGPLEHVHDSPYDLNDDRETVTLPDYDCLTESQLHKTLGLQCNRYISYIGSTSQLDSLLLSFYEYNTNNTANFIEGSTRVRTIRKVQRLSEPTQENSTTKLLLGECEAFVLIEDPRQEDITGSGSPNSRSGWVAMSPRRTAEVKQVLEMTGNLGPKLMSLFVRHVLPCYPVMHKTTLLDKYNRSVYELSSSILGAIFYLSINWLAYDSEVSSDVLPPGDRMDEVTKEHYAKELPTPTISTVQAGLLFLQHDIYANEKPGQETPSWHILSQVVGAAYEVGLHLDSTNWDIPYWEKILRKRLGWAVYVQDKWTALISGRPSMINEENWTVPDIVAEREFTDLFVAEENEDEAYELSQITVNVTNSILLFCEMVKLSKILSDMLKNLFSSKHWAQTYDESNIDQKILNDLELVKGYHLQLREWYKSIPQRLTNSQLQDGELSPDGNLHIAFYAAELSLFRHLLKLLARSNSSDLVTLRQYVHQASCDLWMAAIDTVINLKSQHLQTFWYSFSKYNLSQFVTFGFLLFAVLEDINEKKMILKKMEIYRWSLVLFSKSASFMKHAVFWIDHYSTRLKSEISRVKQPN
SIO_010081: AWJ20_2332
subclass of: SO_0000673
so part of: AWJ20_2332
location: 1014919..1017123
location: region:1014919-1017123:1
so has part: feature:1014919-1017123:1:exon

XP_018737202.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1014919-1017123:1:exon

AWJ20_2333
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2333
so part of: sequence
location: complement(<1017146..>1019029)
location: region:1017146-1019029:-1
so has part: feature:1017146-1019029:-1:exon
subclass of: SO_0000010

30034233
type: Gene
SIO_000068: ncbigene

position:1017146:-1
position: 1017146
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1019029:-1
position: 1019029
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1017146-1019029:-1:exon

AWJ20_2333
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2333
product: hypothetical protein
transcript id: XM_018879270.1
SIO_010081: AWJ20_2333
subclass of: SO_0000673
so part of: AWJ20_2333
location: complement(<1017146..>1019029)
location: region:1017146-1019029:-1
so has part: feature:1017146-1019029:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1017146-1019029:-1:exon

AWJ20_2333
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2333
codon start: 1
product: hypothetical protein
translation: MTPTVAEASIINARPKPFLLPSGRVALVIIDMQRDFVQQGGYGSYQCASKEIFAKVSESIGPLKSVLEMSRKSGVTVIHTREGHEADLPDCPPSKLLRQKESNPSQHTLCIGDNGPMGRLLVRGEYGHDIIDDLKPLRNEIVLDKPAKGSFCNTNFYEILTASGISHIVLTGVTTECCVATTFREANDRGFECCVLADCTGGFDPNIEKWTLEGFCAYDGLFGYLSNSTDFIDSLELYNRPIPDYVGPLSYAKLSQTYQTETKPADFIRSILEKSESHDALGLLLNSYLDINQQLNALEKLEDDPPALYGVPFITTGDVSSLIIQHAVDLGAIHIGSLPESNPVTGFNNNLDSVFDHDLCSFVISTDYDGSSHIMASSYNNKSVYSFVPSPRGVLQSKQSTSHLSIISCDLSIIRQLWVRLVCLDTMGNYPTPPIDYRHIADRGINIGLLTDGELHSDFQELAQEICLLTSSPLVEIGFDKWDKYVSTIELLHNQEKLSKMHVGQASFAELEITYLKDFEIPGWEVSANVSMAQLLETRFRDSLGPNKAHFLLASTLPSGFNRNCSGNMSVKEAISTKRNVFAFNSLNLPTITLSAFGQLSITVAARPGMDWEMLDFVQYLVKDRSV
SIO_010081: AWJ20_2333
subclass of: SO_0000673
so part of: AWJ20_2333
location: complement(1017146..1019029)
location: region:1017146-1019029:-1
so has part: feature:1017146-1019029:-1:exon

XP_018737203.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1017146-1019029:-1:exon

AWJ20_2334
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: AMD2
locus tag: AWJ20_2334
so part of: sequence
location: <1019388..>1020035
location: region:1019388-1020035:1
so has part: feature:1019388-1020035:1:exon
subclass of: SO_0000010

30034234
type: Gene
SIO_000068: ncbigene

position:1019388:1
position: 1019388
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1020035:1
position: 1020035
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1019388-1020035:1:exon

AWJ20_2334
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: AMD2
locus tag: AWJ20_2334
product: Amd2p
transcript id: XM_018879271.1
SIO_010081: AWJ20_2334
subclass of: SO_0000673
so part of: AWJ20_2334
location: <1019388..>1020035
location: region:1019388-1020035:1
so has part: feature:1019388-1020035:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1019388-1020035:1:exon

AWJ20_2334
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: AMD2
locus tag: AWJ20_2334
inference: similar to AA sequence:KEGG_Orthology:K01426
note: Putative amidase; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004040 - amidase activity [Evidence IEA]; GO_function: GO:0004040 - amidase activity [Evidence ISS] [PMID 2263500]; GO_function: GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA,IEA]
codon start: 1
product: Amd2p
translation: MVGDYKSISQRKIQERDAKIPDAWKLSKVPTGDNLLQVPETCGILTPREIEITGTYDSVDLLKKIHSGEFTAEEVTIAFCKRASIAQQLLNCLTEILFEEAIAVAQKQDEYFKRTGEVVGPLHGLPISLKDSMNIKGVDSSISITALAFQPEKEDSGVTTALLKAGAIIFCKTNVPQSMMVLDTDNFTFGRCRNPHSEFITAAGSSGGAGKSNVL
SIO_010081: AWJ20_2334
subclass of: SO_0000673
so part of: AWJ20_2334
location: 1019388..1020035
location: region:1019388-1020035:1
so has part: feature:1019388-1020035:1:exon

XP_018737204.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1019388-1020035:1:exon

AWJ20_2335
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: AMD2
locus tag: AWJ20_2335
so part of: sequence
location: <1020105..>1020995
location: region:1020105-1020995:1
so has part: feature:1020105-1020995:1:exon
subclass of: SO_0000010

30034235
type: Gene
SIO_000068: ncbigene

position:1020105:1
position: 1020105
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1020995:1
position: 1020995
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1020105-1020995:1:exon

AWJ20_2335
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: AMD2
locus tag: AWJ20_2335
product: Amd2p
transcript id: XM_018879272.1
SIO_010081: AWJ20_2335
subclass of: SO_0000673
so part of: AWJ20_2335
location: <1020105..>1020995
location: region:1020105-1020995:1
so has part: feature:1020105-1020995:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1020105-1020995:1:exon

AWJ20_2335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: AMD2
locus tag: AWJ20_2335
inference: similar to AA sequence:KEGG_Orthology:K01426
note: Putative amidase; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004040 - amidase activity [Evidence IEA]; GO_function: GO:0004040 - amidase activity [Evidence ISS] [PMID 2263500]; GO_function: GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA,IEA]
codon start: 1
product: Amd2p
translation: MATDIGGSIRFPAYANGVYGFKPSSGRVPYYNIKGYWPPGEEYNGVLCVAGPIAVSMRDCELIIKAIAETEPWKYDPTCIYSPWPKQKTLAADDKRPLSIGVVRGPTAEPITSILAEACKKITDAGHELVEMEIINGPEMLDLTTKIFQVDGGKFLVDLCSTTNEPLTKTVIDNGLYPCEPADLSQFFAYSHRRIELQKAWAEYWEQSAGTTASGKPVDILLMPISPFVPRVREFLSSPFINVWNLLDYPALTFTADKINLSKHKVEIPPPSNIGETNSEQYCKYDSSSNKKEISH
SIO_010081: AWJ20_2335
subclass of: SO_0000673
so part of: AWJ20_2335
location: 1020105..1020995
location: region:1020105-1020995:1
so has part: feature:1020105-1020995:1:exon

XP_018737205.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1020105-1020995:1:exon

AWJ20_2336
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PKP2
locus tag: AWJ20_2336
so part of: sequence
location: <1021833..>1023350
location: region:1021833-1023350:1
so has part: feature:1021833-1023350:1:exon
subclass of: SO_0000010

30034236
type: Gene
SIO_000068: ncbigene

position:1021833:1
position: 1021833
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1023350:1
position: 1023350
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1021833-1023350:1:exon

AWJ20_2336
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PKP2
locus tag: AWJ20_2336
product: protein kinase PKP2
transcript id: XM_018879273.1
SIO_010081: AWJ20_2336
subclass of: SO_0000673
so part of: AWJ20_2336
location: <1021833..>1023350
location: region:1021833-1023350:1
so has part: feature:1021833-1023350:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1021833-1023350:1:exon

AWJ20_2336
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PKP2
locus tag: AWJ20_2336
codon start: 1
product: protein kinase PKP2
translation: MHRQNVRRGLRLNIRPRSSTTSWTTVTTPLLSRNQSHVARINLLNSSAVDSEGNSASRSYTYPKNSTVINERHFYQNTVLMDWVNKAPRPVSLRQLAFFGRKLTPEKIISSANFVQVELPVRLAHRVRDMQQLPFAVVSNTHISPVYEQYYKAFDKFRKFPLITTLEQNDEFCNLLTELLDEHLSIIPKLVMGAIECSMADCIDSDRLDSFMSTMLCSRISRRVIAEQHLSLSKTFRANQGQTELPHDPNFIGAVFLQCSARKSVSQCAKHATALIQELYPDLEMPKIEVEVQQQSKDDITFPYIKSHLDYIIGELLRNSIEATVLFWQKKHAKDPAMHPHPPPITVSISNTPQNVFIRISDLGGGVPQDVLPHIWSFAKGPRSLYRLQNFKQVPTLAGLSDEVGTGIERSRIASAFEASDTFLRTGRSDIDPEEDPSGIKNSLASLTSRSSHLKLGMGLPLSRVYAEYWDGALDLHSLEGYGCDVFLKISRLGNQMERLSLDRV
SIO_010081: AWJ20_2336
subclass of: SO_0000673
so part of: AWJ20_2336
location: 1021833..1023350
location: region:1021833-1023350:1
so has part: feature:1021833-1023350:1:exon

XP_018737206.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1021833-1023350:1:exon

AWJ20_2337
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: DUG1
locus tag: AWJ20_2337
so part of: sequence
location: complement(<1023560..>1024861)
location: region:1023560-1024861:-1
so has part: feature:1023560-1024861:-1:exon
subclass of: SO_0000010

30034237
type: Gene
SIO_000068: ncbigene

position:1023560:-1
position: 1023560
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1024861:-1
position: 1024861
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1023560-1024861:-1:exon

AWJ20_2337
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: DUG1
locus tag: AWJ20_2337
product: metallodipeptidase
transcript id: XM_018879274.1
SIO_010081: AWJ20_2337
subclass of: SO_0000673
so part of: AWJ20_2337
location: complement(<1023560..>1024861)
location: region:1023560-1024861:-1
so has part: feature:1023560-1024861:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1023560-1024861:-1:exon

AWJ20_2337
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: DUG1
locus tag: AWJ20_2337
inference: similar to AA sequence:KEGG_Orthology:K15428
note: Cys-Gly metallo-di-peptidase; forms a complex with Dug2p and Dug3p to degrade glutathione (GSH) and other peptides containing a gamma-glu-X bond in an alternative pathway to GSH degradation by gamma-glutamyl transpeptidase (Ecm38p); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17179087]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0016805 - dipeptidase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0070573 - metallodipeptidase activity [Evidence IDA,IMP] [PMID 19346245]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008242 - omega peptidase activity [Evidence IGI] [PMID 17179087]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0034701 - tripeptidase activity [Evidence IEA]; GO_process: GO:0006751 - glutathione catabolic process [Evidence IMP] [PMID 17179087]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]
codon start: 1
product: metallodipeptidase
translation: MAHWLKSQLTKLGATDIQLKDLGIQEHTKDLALPPVVLARFGTDANKKNILIYGHYDVQPALKEDGWNTEPFELVEQGDCLYGRGATDDKGPVISWLNILQAHNELKLELPVNLVFCFEGMEESGSLGLDDLIIAEKDKYFKGVDAVCISDNYWLGTTHPVLTYGVRGCSYYSITISGPAADLHSGLFGGVVHEPMIDLSHIFAKLTDPQGKILIPGIKEMVAPLTPEEDKLYDTINFDLEGFEQNIGSKTVLHDNVKDALQARWRYPSLSIHGVEGAFYNPGAKTVIPAKVVGKFSIRTVPNIEPRKLDEVVFKYVNEVFASLKSKNTLKVELVHDGDYWVSDPHNWSFRAARKATKAVWGVEPDLTREGGSIPITLSFQNNLNTSVILLPMGRGDDGAHSTNEKINVSNYIEGTKTLGSYLHFIAEEEKDA
SIO_010081: AWJ20_2337
subclass of: SO_0000673
so part of: AWJ20_2337
location: complement(1023560..1024861)
location: region:1023560-1024861:-1
so has part: feature:1023560-1024861:-1:exon

XP_018737207.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1023560-1024861:-1:exon

AWJ20_2338
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CDC33
locus tag: AWJ20_2338
so part of: sequence
location: <1027100..>1029173
location: region:1027100-1029173:1
so has part: feature:1027100-1029173:1:exon
subclass of: SO_0000010

30034238
type: Gene
SIO_000068: ncbigene

position:1027100:1
position: 1027100
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1029173:1
position: 1029173
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1027100-1029173:1:exon

AWJ20_2338
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CDC33
locus tag: AWJ20_2338
product: translation initiation factor eIF4E
transcript id: XM_018879275.1
SIO_010081: AWJ20_2338
subclass of: SO_0000673
so part of: AWJ20_2338
location: join(<1027100..1027320,1027700..>1029173)
location: region:1027100-1029173:1
so has part: feature:1027100-1027320:1:exon
so has part: feature:1027700-1029173:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1027100-1027320:1:exon

position:1027320:1
position: 1027320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1027700-1029173:1:exon

position:1027700:1
position: 1027700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

AWJ20_2338
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CDC33
locus tag: AWJ20_2338
inference: similar to AA sequence:KEGG_Orthology:K03259
note: mRNA cap binding protein and translation initiation factor eIF4E; the eIF4E-cap complex is responsible for mediating cap-dependent mRNA translation via interactions with translation initiation factor eIF4G (Tif4631p or Tif4632p); protein abundance increases in response to DNA replication stress; mutants are defective for adhesion and pseudohyphal growth; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8119957]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 17908917]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 18981231]; GO_component: GO:0016281 - eukaryotic translation initiation factor 4F complex [Evidence TAS] [PMID 9841679]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8119957]; GO_component: GO:0005840 - ribosome [Evidence TAS] [PMID 9841679]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 16343487]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA,IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence ISS] [PMID 3062383]; GO_process: GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [Evidence IDA,IPI] [PMID 15753296]; GO_process: GO:0051726 - regulation of cell cycle [Evidence IMP] [PMID 2540596]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA,IEA]; GO_process: GO:0006413 - translational initiation [Evidence ISS] [PMID 3062383]
codon start: 1
product: translation initiation factor eIF4E
translation: MIDRIHAGTCKGPPASGGWGSAPDPVAPASQEIAGTVDESTRAKREEQPGSGAEPQPPEAEPGLANVMWLSGTGEKSTYLAAAGVKKQGANESLLLQGNDSSLSREGDETESNGSGNSHRNSGQVYGLGQGHIHSHGNGHGPNHGHNNSNGHSSSNGGHNHNNHHSQNQSLSDELPVDDEINEEGLRVVKPRLGSHILPASWTFWFLHRGPGQNFSNYLDATRQIGSFDTVEEFWDIYSHLRRIDKLPFTSEYQLFRKGVKPLWEDEVNVNGGKWVIRLERPKERRRDDGAAAGEGSVASAGVIGSGPTGTTASASGTGVAPIGAPSSSGADSTQNSVAATRAFVHKQVQARHKAALSWENLILAIVGNTIGSVDDKKAADNDQKRETTNEDEEVDDNEDLSELLGDEIVGAVVSVRRDEDILSVWNRSGNDKKVVNKIKVALQRTLNLSDDVYLEYKVHTKSIKEGAKKQATYDQLKQQQHQQQTPTGGSPSHYPNKNGHHEHRHFNNNNNNNNNNNSNYHQSHNGNYHHNHSHHNNHSTGFHGPVGKTVDSSASASTTSVDL
SIO_010081: AWJ20_2338
subclass of: SO_0000673
so part of: AWJ20_2338
location: join(1027100..1027320,1027700..1029173)
location: region:1027100-1029173:1
so has part: feature:1027100-1027320:1:exon
so has part: feature:1027700-1029173:1:exon

XP_018737208.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1027100-1027320:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1027700-1029173:1:exon

AWJ20_2339
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CHA4
locus tag: AWJ20_2339
so part of: sequence
location: <1030694..>1033006
location: region:1030694-1033006:1
so has part: feature:1030694-1033006:1:exon
subclass of: SO_0000010

30034239
type: Gene
SIO_000068: ncbigene

position:1030694:1
position: 1030694
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1033006:1
position: 1033006
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1030694-1033006:1:exon

AWJ20_2339
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CHA4
locus tag: AWJ20_2339
product: Cha4p
transcript id: XM_018879276.1
SIO_010081: AWJ20_2339
subclass of: SO_0000673
so part of: AWJ20_2339
location: <1030694..>1033006
location: region:1030694-1033006:1
so has part: feature:1030694-1033006:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1030694-1033006:1:exon

AWJ20_2339
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CHA4
locus tag: AWJ20_2339
note: DNA binding transcriptional activator; mediates serine/threonine activation of the catabolic L-serine (L-threonine) deaminase (CHA1); Zinc-finger protein with Zn[2]-Cys[6] fungal-type binuclear cluster domain; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 8889513]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IDA,IPI,ISS] [PMID 8889513]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0009063 - cellular amino acid catabolic process [Evidence IGI,IMP] [PMID 8889513]; GO_process: GO:0045893 - positive regulation of transcription, DNA-templated [Evidence IMP] [PMID 8889513]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]
codon start: 1
product: Cha4p
translation: MDPISRFTPALSAAQMIPGTGPIIPTGRSSTTVTPPADTSSDTATAPKKRSVISLACSTCRKRKTKCDGRKPACSQCLNTGRPNECVYDVNADRRRSWHSRQNKVLMEKLSAAEALIKRIRNGGKDCEDAIREIQSGSAAGLTNGISIDVSVKTESISGADTTYGKASSIANTSESNDGPDNNWKEDNDLTLDEEGQVHFFGGTSNLPEIKQSLTVSGRTHYKKSALQSLLNEEEPRQFQDQRLLQYKNGPTDSQSQGMSLSATSPVMSTSPTAQSGTNLSNTPSSTSSDNNYHSLPPLSGPFYTAHNVDIPTPIVHHLLDLYFCWQHSYYNIFNAELFLRDLQTGGKFYSKFLLNAVLAHASQLSNVQLLRSDPSDPSTAGYMFFNEARSQIEQELLKRSVTTIQGLLLLASREAGIGRDTVGWVYSGMAFRMAVDLGLHLDCKSLCECGFLTHDDYIVRNATFWGCYLFDQGWSTYMGRPSVIHLSDVTVSRPEFIVNEQPTEWRPVFNSPTNLPIGRRIVGSPVPFYPQNTLTSILRLSEVIEDIQKSLYSPKRSLKRDGSFKIEEKVKEIFHKLASWEENLPIEMKRGPGSEHPSVLLVYTLYYATKIFLFRPFVQVKESQSAPGPNHGAALEQCLDAAANIVARLKQFKARYTLRLATNMSVYISFTAATISLSKPGDDALAIQLNECLEFLKEIGESWTSANTVGEGIKARLTATSQQAGHQTDATDQLLFPTFAIGTPNFLEAVDLLNYDNVPEFEFLMSNNV
SIO_010081: AWJ20_2339
subclass of: SO_0000673
so part of: AWJ20_2339
location: 1030694..1033006
location: region:1030694-1033006:1
so has part: feature:1030694-1033006:1:exon

XP_018737209.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1030694-1033006:1:exon

AWJ20_2340
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: mug73
locus tag: AWJ20_2340
so part of: sequence
location: complement(<1033238..>1034554)
location: region:1033238-1034554:-1
so has part: feature:1033238-1034554:-1:exon
subclass of: SO_0000010

30034241
type: Gene
SIO_000068: ncbigene

position:1033238:-1
position: 1033238
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1034554:-1
position: 1034554
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1033238-1034554:-1:exon

AWJ20_2340
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: mug73
locus tag: AWJ20_2340
product: membrane transporter (predicted)
transcript id: XM_018879278.1
SIO_010081: AWJ20_2340
subclass of: SO_0000673
so part of: AWJ20_2340
location: complement(<1033238..>1034554)
location: region:1033238-1034554:-1
so has part: feature:1033238-1034554:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1033238-1034554:-1:exon

AWJ20_2340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: mug73
locus tag: AWJ20_2340
codon start: 1
product: membrane transporter (predicted)
translation: MFDALSGLGAGGQRAASVSLTDEANAALYACFAVVGFFGGSIVNTLGPRYTFFLGTLGYTIYIGSLWSLDRNGNRGFVVAGGVLCGISAGLLWSVHGMITMAYPEEKDKAKGFAITWSLLSIGATLGGLIPLLQNLHRPDDSGVNTGTYLGFLIVMLVGVCVSLTLCDPKAVRRKSGLPLEDFKQTDFRTEIIGVFKLVTDKKIMMLLPAFFASNFFYSYQFGMNAFYFSLRTRSLNSLIYWLTQVIGTFFIGAVLDNHRMGRRKRGLLGLAIVSIFVLGTWAGGVAFQVTFTRKTDPPPNVDWTSSKFGGPFVLYFMYGMSDAMWQSWCYWIMGSLTNETFRLARYAGFYKGIQSAGSAISFGIDAAGTPFMNEVVANFILMGCSIPLMAYVACQTVETNYGLESEIFDPTAPLPVTNCDEGSDDVDQVSTHHPQKV
SIO_010081: AWJ20_2340
subclass of: SO_0000673
so part of: AWJ20_2340
location: complement(1033238..1034554)
location: region:1033238-1034554:-1
so has part: feature:1033238-1034554:-1:exon

XP_018737210.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1033238-1034554:-1:exon

AWJ20_2341
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2341
so part of: sequence
location: <1038142..>1039449
location: region:1038142-1039449:1
so has part: feature:1038142-1039449:1:exon
subclass of: SO_0000010

30034242
type: Gene
SIO_000068: ncbigene

position:1038142:1
position: 1038142
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1039449:1
position: 1039449
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1038142-1039449:1:exon

AWJ20_2341
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2341
product: hypothetical protein
transcript id: XM_018879279.1
SIO_010081: AWJ20_2341
subclass of: SO_0000673
so part of: AWJ20_2341
location: <1038142..>1039449
location: region:1038142-1039449:1
so has part: feature:1038142-1039449:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1038142-1039449:1:exon

AWJ20_2341
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2341
codon start: 1
product: hypothetical protein
translation: MTISLPENMANPLNLSVIGLNSGTSMDSVDIVLCRFKQDDPASPLHLQLVLYDEMPMPVDLKNRVLRLIRDNESSPEELSQVNVQLGITFADATTAFCKKHDINLKSEIDLVASHGQTIWYVSNPGPDQTKSVLTMAEGAYIAQKLSKTVVSDFRISEQSVGRQGAPMIAFFDGLLLAHPTKMRICQNIGGIANSCFIPPESAGGLDKIFDFDNGPGNIFIDAAMRHFTDGQMEYDVDGEWGKKGTADEEMVANFLENESYFKRALPKTTGRELFGDGVSIGLIEEGLRRGLSKYDIIATITRITAQAIVNDYNRFGAGLPPIDELYLCGGGAHNPNIVNYIQQSFPNLKILPLSITGIPGGAKEAVTFAFQGLEAILGRPLIIPDRVENKVPVVVGKVTPGPNYRKLQAVSSNYGINYEDDYLPPVRKLIIDKE
SIO_010081: AWJ20_2341
subclass of: SO_0000673
so part of: AWJ20_2341
location: 1038142..1039449
location: region:1038142-1039449:1
so has part: feature:1038142-1039449:1:exon

XP_018737211.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1038142-1039449:1:exon

AWJ20_2342
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: STT4
locus tag: AWJ20_2342
so part of: sequence
location: <1039843..>1045820
location: region:1039843-1045820:1
so has part: feature:1039843-1045820:1:exon
subclass of: SO_0000010

30034243
type: Gene
SIO_000068: ncbigene

position:1039843:1
position: 1039843
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1045820:1
position: 1045820
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1039843-1045820:1:exon

AWJ20_2342
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: STT4
locus tag: AWJ20_2342
product: 1-phosphatidylinositol 4-kinase STT4
transcript id: XM_018879280.1
SIO_010081: AWJ20_2342
subclass of: SO_0000673
so part of: AWJ20_2342
location: join(<1039843..1040049,1040199..>1045820)
location: region:1039843-1045820:1
so has part: feature:1039843-1040049:1:exon
so has part: feature:1040199-1045820:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1039843-1040049:1:exon

position:1040049:1
position: 1040049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1040199-1045820:1:exon

position:1040199:1
position: 1040199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

AWJ20_2342
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: STT4
locus tag: AWJ20_2342
inference: similar to AA sequence:KEGG_Orthology:K00888
note: Phosphatidylinositol-4-kinase; functions in the Pkc1p protein kinase pathway; required for normal vacuole morphology, cell wall integrity, and actin cytoskeleton organization; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12015967]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 19075114]; GO_function: GO:0004430 - 1-phosphatidylinositol 4-kinase activity [Evidence IEA]; GO_function: GO:0004430 - 1-phosphatidylinositol 4-kinase activity [Evidence IMP] [PMID 8288577]; GO_function: GO:0004430 - 1-phosphatidylinositol 4-kinase activity [Evidence IDA] [PMID 9346907]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IGI] [PMID 10930462]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9346907]; GO_process: GO:0048015 - phosphatidylinositol-mediated signaling [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]
codon start: 1
product: 1-phosphatidylinositol 4-kinase STT4
translation: MGFIGYEYGLVGYRMSANRVRLNRSSIRAQALEKLAGYAAKSDDTEAIERLSGALGSHELSNDHSNLPMSGQEFEGLIALSKSASEIKNCEQAELLLRQLGSYLLEAPSQKYSNSPIVRKIEPSPWQLATKLLTIAVIDLGKAIGYSASADELLIQYIDKLGGLWSVINGDVSSSTTATENYGSLFALAFSFQGFLEGLISRSGQLSASFVETGILKKVVPFVDSSFLLKVETAVSSVAAKEDGLAVLSSRTSPLWLRSFFLYSQTGENVSAMLVNWYLSSLMEEISRAILITHLNESSSTTVGKKSEVLDILLDRAEKNASPKDFQNTNGVNGNGGSYSNSSVGSLVLDDSNRSILSEISNFSVAQVQSLDDGADYIELASPEKVALAFSVKSLALRSIGVANYFGIIPAARVSDFLESSIHYERLLLNHPLYTDIYKLGAYLCYQLESVGSYLSNSLPDFISNPSMTSDVAWNLAETLTKGLRPLSQDNVVSVIYTLINLLTPDSELSAFGTLKRSGTYSTLAQTSSDARGSTSHGQASDGLQTLSTRNIITAAVAIGATYGDSQIATLTSTVLSQKYATVNSSVDSEVIRGLALLAPHVNEKEFKVILRAFSTAESLAFRNNNSNIVEAISESRSRLAKSLTRKHPLFEKYLADLLASIVSKGDSTADEHHRSHSEISATAKEIAALLPPLATLLPKSHEPAYETNNWEMISLFRNAWFNMVVHGFSKKSSWTAQHKSDLEIIARSTPPLVSEASSNMVESELELNTVLRRGSSHHNVNDQKDTMQSLFSLHTFEVRSMSYPKLMFLSAAVLLESIRADTGDCSKVLHYFGDPDFRSGDTGKYMSTIATDSTKIYITNIIKGGKMEFTADHVAEQLKKVLILCCHRVSAVQNNAFASAELIIRSIPSALCKPQSLFALLDLMTLLWTSCLDAETDEYEPRTSFTSPGTNITLELSDSYEHRQQSLQRLLKSAHQWIDIVLPSMSFDLKSLLTSYLTEMGDYRPFNHVALGCTFALEVGGTISRGDGELVTIAKFDSQGVFTDTASGFLSQYIWRTEYKPKGQYLSAKDIEEVQSSMEGLLSSQHPHVSLSEMRDLLFKAATILRGTKPNPYIAQLAVKIPFRFFTEKHIEMGISLWLWIMNEVPSLRMPIIAQVGQEWEKTVKEGKGLFNRKYDITRPDFSRMEYAPSNRAEIDHDANLAQRSLSVHMILVRFLSSVFQASTYESRHLLRIFSRLLTVGLAGFSKASLHPFARSIRFELTKFALEVLDVHSRFSARISEHLKDLIITSALTWFSQPIQWPFGGNKLKLRADIVLLKDVTLKVANLAVPKSFAALSKKRKLLLMFLNDELTKMSAWLDPLQVGTSFRESFGKQVIKNASISDSDVFDAWSIDPVLAVYLVERYKESSNVLVLEKLVGEDPAKVISVPEALSYFLGKSPLSADVRRHILYWTPVSPIESINLFLPAKGADSYMLQYAMRSLESHDVNLTFFYVPQIVQSLRYDTGGYIEAYILETAKISQLFAHQIIWNILANSYKDEDSEVPDDMKPTLDRVVQKMTDSFNAEEKSFYEREFNFFNEVTSISGKLKPYIKKSKAEKKAKIDEEMAKIKLDVGVYLPSNPDGVVVAIDRKSGRPLQSHAKAPFLAKFKIKKELVDLNEDNSEAESDTASEVTRKEPNYIEVWQGAIFKVGDDCRQDVLALQIISVFRTIFKASGLDLYVFPYRVTATAPGCGVIDVLPNSISRDMLGREAVNGLYEYFTSKHGGEDSIDFQRARNNFVKSLAAYSVISYLIQFKDRHNGNLMYDSDGHILHIDFGFCFDIVPGGVKFEAAPFKLTAEMMAVMGGNTNTQAYRWFEELTIKAFLACRPYAETIIQVVLPMLDSGLPCFKGEATIRRLRARFALEKSEREAALHFKHLIKKSLESMYTKGYDEFQRITNGIPY
SIO_010081: AWJ20_2342
subclass of: SO_0000673
so part of: AWJ20_2342
location: join(1039843..1040049,1040199..1045820)
location: region:1039843-1045820:1
so has part: feature:1039843-1040049:1:exon
so has part: feature:1040199-1045820:1:exon

XP_018737212.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1039843-1040049:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1040199-1045820:1:exon

AWJ20_2343
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SWI5
locus tag: AWJ20_2343
so part of: sequence
location: complement(<1046114..>1047631)
location: region:1046114-1047631:-1
so has part: feature:1046114-1047631:-1:exon
subclass of: SO_0000010

30034244
type: Gene
SIO_000068: ncbigene

position:1046114:-1
position: 1046114
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1047631:-1
position: 1047631
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1046114-1047631:-1:exon

AWJ20_2343
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SWI5
locus tag: AWJ20_2343
product: DNA-binding transcription factor SWI5
transcript id: XM_018879281.1
SIO_010081: AWJ20_2343
subclass of: SO_0000673
so part of: AWJ20_2343
location: complement(<1046114..>1047631)
location: region:1046114-1047631:-1
so has part: feature:1046114-1047631:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1046114-1047631:-1:exon

AWJ20_2343
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SWI5
locus tag: AWJ20_2343
inference: similar to AA sequence:KEGG_Orthology:K09202
codon start: 1
product: DNA-binding transcription factor SWI5
translation: MEPSLDSRWVTNNRNLSEGYQERPIPLPHEDFEPYFSQYAEYDSVLDESLASTVHDLAIPSGAPAYSMEGLGSGYPLPPSSPPVHPSQLQSPQRARHQVSIKPSSLARYSKMMNYNNIAITPAALSSENASALQAYANQLNPQVVSAMKNLGANSEVYLHEPASNNGSPPSLPLASASSPGPGPMVYTSSSASLSASSLSSSYYQKGNASNSNFTVASDSYLDPNGFHSSPMKRRPSALGESDSEAYFSSSEHSQSPNIDTSPEMASGDQFYTGATPGLASMNIFSSIDMGPVDTSGSIAWQPVITAPKNEISQEIIKMQQSSGKQSNRKSCLPPGKVDSYMAGPNPEGLFECLFPNCGKLFRRRYNVRSHIQTHLCDRPYSCDSCGACFVRPHDLRRHEKCHQDERPYKCPCGKGFTRHDALQRHRIRMICVGGIEIPGKPKKPPGKRGRPRKVQSMMQMRPSNSSEDSDADDGMGSPFSDQGLEYIDHGSEAIAVKDEIIWSR
SIO_010081: AWJ20_2343
subclass of: SO_0000673
so part of: AWJ20_2343
location: complement(1046114..1047631)
location: region:1046114-1047631:-1
so has part: feature:1046114-1047631:-1:exon

XP_018737213.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1046114-1047631:-1:exon

AWJ20_2344
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2344
so part of: sequence
location: complement(<1049244..>1049918)
location: region:1049244-1049918:-1
so has part: feature:1049244-1049918:-1:exon
subclass of: SO_0000010

30034245
type: Gene
SIO_000068: ncbigene

position:1049244:-1
position: 1049244
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1049918:-1
position: 1049918
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1049244-1049918:-1:exon

AWJ20_2344
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2344
product: hypothetical protein
transcript id: XM_018879282.1
SIO_010081: AWJ20_2344
subclass of: SO_0000673
so part of: AWJ20_2344
location: complement(<1049244..>1049918)
location: region:1049244-1049918:-1
so has part: feature:1049244-1049918:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1049244-1049918:-1:exon

AWJ20_2344
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2344
codon start: 1
product: hypothetical protein
translation: MSSDPSFHGGRTRTYEHVPGKWPSHVYLEWIPDHSQFTVLKDVVEYLTSSENSNGGDIVSLLETDLGVKLPLHISLSETLMLDTAQKDPFLKAVTEYFENKSAIDVTLDPSVKVLHNKTRTRRFLSLQAKDRAENLAKWTKDIDTIAYSFCQTGLIATDTPHISIASIDGPIENTTATIVDGSSDHHLLPRHVSKPVSSLVIHLDEVKLRIGRDVHILNLKHRD
SIO_010081: AWJ20_2344
subclass of: SO_0000673
so part of: AWJ20_2344
location: complement(1049244..1049918)
location: region:1049244-1049918:-1
so has part: feature:1049244-1049918:-1:exon

XP_018737214.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1049244-1049918:-1:exon

AWJ20_2345
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: KGD2
locus tag: AWJ20_2345
so part of: sequence
location: <1051479..>1052642
location: region:1051479-1052642:1
so has part: feature:1051479-1052642:1:exon
subclass of: SO_0000010

30034246
type: Gene
SIO_000068: ncbigene

position:1051479:1
position: 1051479
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1052642:1
position: 1052642
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1051479-1052642:1:exon

AWJ20_2345
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: KGD2
locus tag: AWJ20_2345
product: alpha-ketoglutarate dehydrogenase KGD2
transcript id: XM_018879283.1
SIO_010081: AWJ20_2345
subclass of: SO_0000673
so part of: AWJ20_2345
location: <1051479..>1052642
location: region:1051479-1052642:1
so has part: feature:1051479-1052642:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1051479-1052642:1:exon

AWJ20_2345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: KGD2
locus tag: AWJ20_2345
inference: similar to AA sequence:KEGG_Orthology:K00658
note: Dihydrolipoyl transsuccinylase; component of the mitochondrial alpha-ketoglutarate dehydrogenase complex, which catalyzes the oxidative decarboxylation of alpha-ketoglutarate to succinyl-CoA in the TCA cycle; phosphorylated; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 10869431]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 11926067]; GO_component: GO:0009353 - mitochondrial oxoglutarate dehydrogenase complex [Evidence IDA] [PMID 2072900]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0045252 - oxoglutarate dehydrogenase complex [Evidence IEA]; GO_function: GO:0004149 - dihydrolipoyllysine-residue succinyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004149 - dihydrolipoyllysine-residue succinyltransferase activity [Evidence ISA] [PMID 2115121]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA,IEA]; GO_process: GO:0006103 - 2-oxoglutarate metabolic process [Evidence IMP] [PMID 2115121]; GO_process: GO:0033512 - L-lysine catabolic process to acetyl-CoA via saccharopine [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IGI] [PMID 10869431]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IC] [PMID 2072900]
codon start: 1
product: alpha-ketoglutarate dehydrogenase KGD2
translation: MAESITEGTLKGFEKEIGDFVEQDEEVATIETDKIDVSVNAPFAGTLTEFLANADDTVVVGQPLFKIEPGEGGGAKSESKSESKSESKSESESKSESKSESKPAESKSEESKPSEPAAESKPAESKPAEPAKKPAAKTPAAEEAKPASAGLREERRVKMNRMRLRIAERLKESQNTAASLTTFNEVDMSALMEMRKLYKDEVLKSTGIKFGFMGAFAKASVLAMKDIPAVNAAIEGPNGGDTIVYKDYVDISVAVATPKGLVTPVVRNAEQLSVLGIEKEIAALGVKARDGKLTLEDMAGGTFTISNGGVFGSLYGTPIINMPQSAVLGLHGIKERAVVVNGQVVARPMMYLALTYDHRLLDGREAVTFLKTVKELIEDPRKMLLVQ
SIO_010081: AWJ20_2345
subclass of: SO_0000673
so part of: AWJ20_2345
location: 1051479..1052642
location: region:1051479-1052642:1
so has part: feature:1051479-1052642:1:exon

XP_018737215.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1051479-1052642:1:exon

AWJ20_2346
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CKI1
locus tag: AWJ20_2346
so part of: sequence
location: complement(<1052956..>1054485)
location: region:1052956-1054485:-1
so has part: feature:1052956-1054485:-1:exon
subclass of: SO_0000010

30034247
type: Gene
SIO_000068: ncbigene

position:1052956:-1
position: 1052956
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1054485:-1
position: 1054485
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1052956-1054485:-1:exon

AWJ20_2346
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CKI1
locus tag: AWJ20_2346
product: bifunctional choline kinase/ethanolamine kinase CKI1
transcript id: XM_018879284.1
SIO_010081: AWJ20_2346
subclass of: SO_0000673
so part of: AWJ20_2346
location: complement(<1052956..>1054485)
location: region:1052956-1054485:-1
so has part: feature:1052956-1054485:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1052956-1054485:-1:exon

AWJ20_2346
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CKI1
locus tag: AWJ20_2346
inference: similar to AA sequence:KEGG_Orthology:K00866
note: Choline kinase; catalyzes the first step in phosphatidylcholine synthesis via the CDP-choline (Kennedy pathway); exhibits some ethanolamine kinase activity contributing to phosphatidylethanolamine synthesis via the CDP-ethanolamine pathway; CKI1 has a paralog, EKI1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004103 - choline kinase activity [Evidence IEA]; GO_function: GO:0004103 - choline kinase activity [Evidence IGI,IMP] [PMID 10329685]; GO_function: GO:0004103 - choline kinase activity [Evidence IDA] [PMID 2536698]; GO_function: GO:0004305 - ethanolamine kinase activity [Evidence IGI,IMP] [PMID 10329685]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0006657 - CDP-choline pathway [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IEA]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IGI,IMP] [PMID 10329685]; GO_process: GO:0006646 - phosphatidylethanolamine biosynthetic process [Evidence IGI,IMP] [PMID 10329685]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]
codon start: 1
product: bifunctional choline kinase/ethanolamine kinase CKI1
translation: MSPPVLTTTAAATPMTSRPKFRRSHSHQGSNDSLTGVSGLESTNNDDETPHVNFFLDNRLPVEYFKQDIVKLAHGLRISRWKRVELAMANDIIVSRISGALTNAVYSVDPPPYLKDQIKKSYKSDGTNRTYHTKVPQRILLRVYGPQVAHIIDREQELTTVARLSARNIGPRLLGTFQNGRFEQFLHAKPLTKNDIRDPDVSVQIAKRMRELHDNVELLEDERAKGPGVWLSIDKWMVRAGEKLKELEASQPGAAQKLLQCADWTEFLTMVRKYKEWITEKYGKDQIIKELVFAHNDTQYGNILRIEPPKGSPLLMPRNEHRQLVVIDFEYSSGNPRGFDISNHFCEWMSDFHDPERPYHIHHDKYPTLKERMNLIDSYVEHGYDDFDHEDQMEKEAKQLLQETIDWRPAVSAYWCIWGIVQAVIDTDEDLHLREQKDIANGSYKFQTGDSTTDSPSLDMEVEEEEDAVFDYIAYSTEKAQLFWTDMINLGLLPASEYKGTLKPMPLLE
SIO_010081: AWJ20_2346
subclass of: SO_0000673
so part of: AWJ20_2346
location: complement(1052956..1054485)
location: region:1052956-1054485:-1
so has part: feature:1052956-1054485:-1:exon

XP_018737216.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1052956-1054485:-1:exon

AWJ20_2347
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RIM4
locus tag: AWJ20_2347
so part of: sequence
location: <1061364..>1062749
location: region:1061364-1062749:1
so has part: feature:1061364-1062749:1:exon
subclass of: SO_0000010

30034248
type: Gene
SIO_000068: ncbigene

position:1061364:1
position: 1061364
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1062749:1
position: 1062749
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1061364-1062749:1:exon

AWJ20_2347
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RIM4
locus tag: AWJ20_2347
product: Rim4p
transcript id: XM_018879285.1
SIO_010081: AWJ20_2347
subclass of: SO_0000673
so part of: AWJ20_2347
location: <1061364..>1062749
location: region:1061364-1062749:1
so has part: feature:1061364-1062749:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1061364-1062749:1:exon

AWJ20_2347
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RIM4
locus tag: AWJ20_2347
note: Putative RNA-binding protein; required for the expression of early and middle sporulation genes; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IMP,ISS] [PMID 10806425]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEP] [PMID 10806425]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IMP] [PMID 11713679]; GO_process: GO:0006279 - premeiotic DNA replication [Evidence IMP] [PMID 11713679]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IMP] [PMID 11713679]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IGI,IMP] [PMID 10806425]
codon start: 1
product: Rim4p
translation: MERCNPRACVFVASLTSVLPDDHLCKSVTDHFEKWGTVKVVKVLRDLANRPYAFVQYSTVEEAKLAIEQAQRTELDGRAIRCEPAKVNRTLFITPVSVEKIGKSELEATLSRYGEIEDITLAKFSPAIRAPTESWFCRFVYREDATLAYAHLRSHEDWHAEWAQNLEHVVDANKEVIDKYSVFMGRLNFHVTEKQIRERMSRHGEIIECILVSKEPFMSQNEALDYDRLNAFAFVKYADELSAARAIEEENHTIFLDRTIHVQYREFNHIKNRGRRSLGPSLELAPPPVNLPSRFTTISVMTPWLNPALAFNRFSVAPFPPPGYMGPREYREPPSFGPKGRFINDPPTRFHSRPDMRGPPMRGRGGGPGGSGFPRGGSPGGRGGFGGPPRGGRGGAGPGPRPRGGFENQPSSRGGMRENTAPPFRGGGHEGRGGFRGMGRGDAGMGTRGGRGGRGGRGRPQ
SIO_010081: AWJ20_2347
subclass of: SO_0000673
so part of: AWJ20_2347
location: 1061364..1062749
location: region:1061364-1062749:1
so has part: feature:1061364-1062749:1:exon

XP_018737217.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1061364-1062749:1:exon

AWJ20_2348
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ATG7
locus tag: AWJ20_2348
so part of: sequence
location: <1064279..>1065214
location: region:1064279-1065214:1
so has part: feature:1064279-1065214:1:exon
subclass of: SO_0000010

30034249
type: Gene
SIO_000068: ncbigene

position:1064279:1
position: 1064279
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1065214:1
position: 1065214
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1064279-1065214:1:exon

AWJ20_2348
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ATG7
locus tag: AWJ20_2348
product: Atg7p
transcript id: XM_018879286.1
SIO_010081: AWJ20_2348
subclass of: SO_0000673
so part of: AWJ20_2348
location: <1064279..>1065214
location: region:1064279-1065214:1
so has part: feature:1064279-1065214:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1064279-1065214:1:exon

AWJ20_2348
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ATG7
locus tag: AWJ20_2348
inference: similar to AA sequence:KEGG_Orthology:K08337
note: Autophagy-related protein and dual specificity member of the E1 family; mediates the conjugation of Atg12p with Atg5p and Atg8p with phosphatidylethanolamine which are required steps in autophagosome formation; E1 enzymes are also known as ubiquitin-activating enzymes; involved in methionine restriction extension of chronological lifespan in an autophagy-dependent manner; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 10233150]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 10233148]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IEA]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 18497569]; GO_function: GO:0019778 - Atg12 activating enzyme activity [Evidence IMP] [PMID 10233150]; GO_function: GO:0019779 - Atg8 activating enzyme [Evidence IMP] [PMID 11100732]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_process: GO:0006501 - C-terminal protein lipidation [Evidence IMP] [PMID 11038174]; GO_process: GO:0006501 - C-terminal protein lipidation [Evidence IMP] [PMID 11100732]; GO_process: GO:0006501 - C-terminal protein lipidation [Evidence IMP] [PMID 12965207]; GO_process: GO:0006501 - C-terminal protein lipidation [Evidence IDA,IMP] [PMID 15277523]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 10233150]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 12965207]; GO_process: GO:0006914 - autophagy [Evidence IEA,IEA]; GO_process: GO:0006914 - autophagy [Evidence IMP] [PMID 23382696]; GO_process: GO:0044805 - late nucleophagy [Evidence IMP] [PMID 22768199]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 10233150]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 12965207]; GO_process: GO:0000422 - mitochondrion degradation [Evidence…
codon start: 1
product: Atg7p
translation: MVGFADPSTIPNVPGWPLRNFLVLLSIAFSISKISILAYRDNSAIKTSIPKSFWINGKSISLVRDIDVGDGSISLAKVTGWERNSSNKLAPKLSDLGSLIDPNQLADQAVDLNLKLMKWRVAPSLNLEVIKHNSCLLLGAGTLGSYISRALLGWGVRKITFVDSGRVSFSNPVRQPLFNFQDCLNGGAPKAARAAQALKEVYPSVDSAGYQIEIPMAGHPITNEERQKSDYDQLIKLIDEHDTIFLLMDSRESRWLPTVIASATNKLVINVALGFDSYVVMRHGVSPSEHPHSPHIGCYFCNDVVTPVDVS
SIO_010081: AWJ20_2348
subclass of: SO_0000673
so part of: AWJ20_2348
location: 1064279..1065214
location: region:1064279-1065214:1
so has part: feature:1064279-1065214:1:exon

XP_018737218.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1064279-1065214:1:exon

AWJ20_2349
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ATG7
locus tag: AWJ20_2349
so part of: sequence
location: <1065299..>1065733
location: region:1065299-1065733:1
so has part: feature:1065299-1065733:1:exon
subclass of: SO_0000010

30034250
type: Gene
SIO_000068: ncbigene

position:1065299:1
position: 1065299
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1065733:1
position: 1065733
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1065299-1065733:1:exon

AWJ20_2349
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ATG7
locus tag: AWJ20_2349
product: Atg7p
transcript id: XM_018879287.1
SIO_010081: AWJ20_2349
subclass of: SO_0000673
so part of: AWJ20_2349
location: <1065299..>1065733
location: region:1065299-1065733:1
so has part: feature:1065299-1065733:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1065299-1065733:1:exon

AWJ20_2349
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ATG7
locus tag: AWJ20_2349
inference: similar to AA sequence:KEGG_Orthology:K08337
note: Autophagy-related protein and dual specificity member of the E1 family; mediates the conjugation of Atg12p with Atg5p and Atg8p with phosphatidylethanolamine which are required steps in autophagosome formation; E1 enzymes are also known as ubiquitin-activating enzymes; involved in methionine restriction extension of chronological lifespan in an autophagy-dependent manner; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 10233150]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 10233148]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IEA]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 18497569]; GO_function: GO:0019778 - Atg12 activating enzyme activity [Evidence IMP] [PMID 10233150]; GO_function: GO:0019779 - Atg8 activating enzyme [Evidence IMP] [PMID 11100732]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_process: GO:0006501 - C-terminal protein lipidation [Evidence IMP] [PMID 11038174]; GO_process: GO:0006501 - C-terminal protein lipidation [Evidence IMP] [PMID 11100732]; GO_process: GO:0006501 - C-terminal protein lipidation [Evidence IMP] [PMID 12965207]; GO_process: GO:0006501 - C-terminal protein lipidation [Evidence IDA,IMP] [PMID 15277523]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 10233150]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 12965207]; GO_process: GO:0006914 - autophagy [Evidence IEA,IEA]; GO_process: GO:0006914 - autophagy [Evidence IMP] [PMID 23382696]; GO_process: GO:0044805 - late nucleophagy [Evidence IMP] [PMID 22768199]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 10233150]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 12965207]; GO_process: GO:0000422 - mitochondrion degradation [Evidence…
codon start: 1
product: Atg7p
translation: MCTVTRPGVALLAAALAVELLSSVLQHPLKALAPPYKGEEDVDSGDQSSSNDPTALSITPHQIRGFLHKFDAMKIWGPSYDKCSACSEKVVEHWKNDGWEFVKKALNDPEYVSEISGLAELQRQAQELELGSMDWTSGSEEEIN
SIO_010081: AWJ20_2349
subclass of: SO_0000673
so part of: AWJ20_2349
location: 1065299..1065733
location: region:1065299-1065733:1
so has part: feature:1065299-1065733:1:exon

XP_018737219.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1065299-1065733:1:exon

AWJ20_2350
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SRP54
locus tag: AWJ20_2350
so part of: sequence
location: <1066730..>1068301
location: region:1066730-1068301:1
so has part: feature:1066730-1068301:1:exon
subclass of: SO_0000010

30034252
type: Gene
SIO_000068: ncbigene

position:1066730:1
position: 1066730
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1068301:1
position: 1068301
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1066730-1068301:1:exon

AWJ20_2350
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SRP54
locus tag: AWJ20_2350
product: Srp54p
transcript id: XM_018879289.1
SIO_010081: AWJ20_2350
subclass of: SO_0000673
so part of: AWJ20_2350
location: <1066730..>1068301
location: region:1066730-1068301:1
so has part: feature:1066730-1068301:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1066730-1068301:1:exon

AWJ20_2350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SRP54
locus tag: AWJ20_2350
inference: similar to AA sequence:KEGG_Orthology:K03106
note: Signal recognition particle (SRP) subunit (homolog of mammalian SRP54); contains the signal sequence-binding activity of SRP, interacts with the SRP RNA, and mediates binding of SRP to signal receptor; contains GTPase domain; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0048500 - signal recognition particle [Evidence IEA]; GO_component: GO:0005786 - signal recognition particle, endoplasmic reticulum targeting [Evidence IEA]; GO_component: GO:0005786 - signal recognition particle, endoplasmic reticulum targeting [Evidence IDA] [PMID 7925282]; GO_function: GO:0008312 - 7S RNA binding [Evidence IEA]; GO_function: GO:0008312 - 7S RNA binding [Evidence IDA] [PMID 14681587]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence ISA] [PMID 2187859]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0005048 - signal sequence binding [Evidence IPI] [PMID 7925282]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0006614 - SRP-dependent cotranslational protein targeting to membrane [Evidence IEA]; GO_process: GO:0006614 - SRP-dependent cotranslational protein targeting to membrane [Evidence IMP] [PMID 1655273]; GO_process: GO:0006617 - SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition [Evidence ISA] [PMID 2187859]; GO_process: GO:0006617 - SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition [Evidence IC] [PMID 7925282]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0043547 - positive regulation of GTPase activity [E…
codon start: 1
product: Srp54p
translation: MVLADLGRRINAAVNSLTSQSVVDQTALDAMLKEICTALLESDVNVRLVGQLRNSIRAKVASALNKEEKESGSNANAIKRLVQKTVFDELCELVEAHPTDEQFKPKKGRSNVIMFVGLQGAGKTTSCTKLAVYYQRRGLRVGLVCADTFRAGAFDQLKQNATKAKIPYYGSYTEPDPVKVSRDGVEKFKKEKFDLIIVDTSGRHRQEQELFAEMVQIGEAVKPDQTLMVLDASIGQAAEQQSKAFKEASNFGAIVLTKMDGHAKGGGAISAVAATNTPIAFIGTGEHVHDFETFSPKQFVSKLLGIGDIQGLMEHVSTLKLDQKDTIKHIQQGIFTLRDLRDQMSNIMKMGPLSKVASMIPGMSQLADQIGEEDSTKRLKTMIYIMDSMTEKELDSDGSPFADQPSRIVRVARGSGTSVREVEEVLYQQKMMAAMAKKMGGKGGMMSRMQQMQGAGGPNPAQIQAAQRRLASMGMGGGAGGMPDMSQLAGMFGQGGMPDMGEMMKMVGSNPNLQNMMKSFGLK
SIO_010081: AWJ20_2350
subclass of: SO_0000673
so part of: AWJ20_2350
location: 1066730..1068301
location: region:1066730-1068301:1
so has part: feature:1066730-1068301:1:exon

XP_018737220.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1066730-1068301:1:exon

AWJ20_2351
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: THR4
locus tag: AWJ20_2351
so part of: sequence
location: <1068712..>1070259
location: region:1068712-1070259:1
so has part: feature:1068712-1070259:1:exon
subclass of: SO_0000010

30034253
type: Gene
SIO_000068: ncbigene

position:1068712:1
position: 1068712
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1070259:1
position: 1070259
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1068712-1070259:1:exon

AWJ20_2351
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: THR4
locus tag: AWJ20_2351
product: threonine synthase THR4
transcript id: XM_018879290.1
SIO_010081: AWJ20_2351
subclass of: SO_0000673
so part of: AWJ20_2351
location: <1068712..>1070259
location: region:1068712-1070259:1
so has part: feature:1068712-1070259:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1068712-1070259:1:exon

AWJ20_2351
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: THR4
locus tag: AWJ20_2351
inference: similar to AA sequence:KEGG_Orthology:K01733
note: Threonine synthase; conserved protein that catalyzes formation of threonine from O-phosphohomoserine; expression is regulated by the GCN4-mediated general amino acid control pathway; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 24390141]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0004795 - threonine synthase activity [Evidence IEA]; GO_function: GO:0004795 - threonine synthase activity [Evidence IMP] [PMID 8082795]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IEA]; GO_process: GO:0009088 - threonine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009088 - threonine biosynthetic process [Evidence IMP] [PMID 8082795]
codon start: 1
product: threonine synthase THR4
translation: MSQKYFSTRTSKDHLSFEEAVIEGLAPDGGLYIPSEIAKLPEDFLTKWKDLSFAQLATEILSLYISEEEIPRADLEKLAARSYSTFRSDHVTPTVPLNKDKNLWLLELFHGPTYAFKDVALQFVGNLFEYFLVRRNAGKKENAPDRDIITVVGATSGDTGSAAIYGLRNKKDVSVFILYPTGRVSPIQETQMTTVLDSNVHTISVKGTFDDCQDLVKQTFADKEFNEKYHIGAVNSINWARILAQITYYFYSYFTLLKTTDGKVTPRFVVPTGNFGDILAGFYAKRMGLPIDQLVIATNDNDILHRFFQSGDYSKSVGDAAPVVHATLSPAMDILVSSNFERFLWYVARENLASTNEEAGAILNKWMSELKTKGKFHVPENALAAARKEFSSEHTSDKETVETIRNVYNDPASGKYVLDPHTAVAVHAALARIAANSNTSAQYVALSTAHPAKFSEAVNLALQGTDGYSFEADVLPDEFKEMQTKETKKIFADKPDIELLKSIIVDELAKEKKTA
SIO_010081: AWJ20_2351
subclass of: SO_0000673
so part of: AWJ20_2351
location: 1068712..1070259
location: region:1068712-1070259:1
so has part: feature:1068712-1070259:1:exon

XP_018737221.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1068712-1070259:1:exon

AWJ20_2352
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: YSH1
locus tag: AWJ20_2352
so part of: sequence
location: complement(<1070528..>1072486)
location: region:1070528-1072486:-1
so has part: feature:1070528-1072486:-1:exon
subclass of: SO_0000010

30034254
type: Gene
SIO_000068: ncbigene

position:1070528:-1
position: 1070528
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1072486:-1
position: 1072486
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1070528-1072486:-1:exon

AWJ20_2352
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: YSH1
locus tag: AWJ20_2352
product: Ysh1p
transcript id: XM_018879291.1
SIO_010081: AWJ20_2352
subclass of: SO_0000673
so part of: AWJ20_2352
location: complement(<1070528..>1072486)
location: region:1070528-1072486:-1
so has part: feature:1070528-1072486:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1070528-1072486:-1:exon

AWJ20_2352
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: YSH1
locus tag: AWJ20_2352
inference: similar to AA sequence:KEGG_Orthology:K14403
note: Putative endoribonuclease; subunit of the mRNA cleavage and polyadenylation specificity complex; required for 3' processing, splicing, and transcriptional termination of mRNAs and snoRNAs; protein abundance increases in response to DNA replication stress; YSH1 has a paralog, SYC1, that arose from the whole genome duplication; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IPI] [PMID 10523662]; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IDA] [PMID 12819204]; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IPI] [PMID 9099738]; GO_component: GO:0005849 - mRNA cleavage factor complex [Evidence IPI] [PMID 9099738]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IC] [PMID 9099738]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0004521 - endoribonuclease activity [Evidence IMP,ISS] [PMID 15037765]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IMP] [PMID 18971324]; GO_process: GO:0006379 - mRNA cleavage [Evidence IMP] [PMID 18971324]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IMP] [PMID 18971324]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0031126 - snoRNA 3'-end processing [Evidence IMP] [PMID 18971324]; GO_process: GO:0034247 - snoRNA splicing [Evidence IMP] [PMID 18971324]; GO_process: GO:0006369 - termination of RNA polymerase II transcription [Evidence IMP] [PMID 18971324]
codon start: 1
product: Ysh1p
translation: MTHPTKAIFRWLLGDFMRVSNVPENYTPLYTAEDLEAAFDRIETVDYHSTMEVEGIKFTAYHAGHVLGAAMYFVEIGGVKVLFTGDYSREEDRHLNQAEVPVQKPDILITESTYGTGIHQPRLEKEARLMSLIKSTVQKGGRCLLPVFALGRAQEILLILDEYWDEHPELEDINIYYVSTLAKKCMAVYQTYINMMNENIRRRFRDSRTNPFQFKHIRSVRNLERFDDIGPCVMVATPGMLQSGVSRDLLERWAPDSKNALIVTGYSVEGTMAKQMLTEPPEISSVNNPEVKIPRRMVVEELSFAAHVDFKENSRFIDMVDAPHIILVHGEANNMGRLKSALMSKYSDRKGTDREVKIYNPKNCYEVELPFKSAKVARTMGELASEPPTDGQIVSGVLVEKDFHLNLLHVSDLREYASLSTSVVTERQSVIVDAGPELIRYHLEQMFGAVETLDETEEASEFMVMGSVKVIHEGNVSTIEWTGNVMNDAIADSVLAVLLSVDTSPASVKLSSTSCGCDNKHDSDHHNGGVKHENGHTHSHNHHQIEVKVDQICALLKAQFGDCLTVADDKKTATIEIEGVVAEVQFEDLTVTCKSPALEKRVAAVLERAVNTAAPLSQNTSRLVELHDDDKDLALEPSPVKEEPLPQAIKAE
SIO_010081: AWJ20_2352
subclass of: SO_0000673
so part of: AWJ20_2352
location: complement(1070528..1072486)
location: region:1070528-1072486:-1
so has part: feature:1070528-1072486:-1:exon

XP_018737222.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1070528-1072486:-1:exon

AWJ20_2353
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2353
so part of: sequence
location: <1073286..>1074342
location: region:1073286-1074342:1
so has part: feature:1073286-1074342:1:exon
subclass of: SO_0000010

30034255
type: Gene
SIO_000068: ncbigene

position:1073286:1
position: 1073286
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1074342:1
position: 1074342
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1073286-1074342:1:exon

AWJ20_2353
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2353
product: recombination protein Irc6 (predicted)
transcript id: XM_018879292.1
SIO_010081: AWJ20_2353
subclass of: SO_0000673
so part of: AWJ20_2353
location: join(<1073286..1073359,1073469..>1074342)
location: region:1073286-1074342:1
so has part: feature:1073286-1073359:1:exon
so has part: feature:1073469-1074342:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1073286-1073359:1:exon

position:1073359:1
position: 1073359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1073469-1074342:1:exon

position:1073469:1
position: 1073469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

AWJ20_2353
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2353
codon start: 1
product: recombination protein Irc6 (predicted)
translation: MEESRSRILIIGKPKSGKLTLAKGNPRHSVLIETELTGSLPEIEEGATSHASLSHEFKIRNKYYSADVGIWIDEFEDPDQLKPEQDPNQENVTKNSPESRISTVARWAQEFCSDEAREVRDVLGAVIFTFDKFEEEDARQVKLFLDKLNDEDWDGLALAVSKGDVEHETACIDTLEELGFDYIQGTTKRPDDTSSDEYHDMSGIEQVKQALEVVPWTFAQKELDDQGELGPEEPGPSLNFTLPAKSTALEQDISSSTSIDMAAGPSSTQSAADATFEDLIRNMSTPILAEDGGSEASVDKFDAFLDKLRRARGEF
SIO_010081: AWJ20_2353
subclass of: SO_0000673
so part of: AWJ20_2353
location: join(1073286..1073359,1073469..1074342)
location: region:1073286-1074342:1
so has part: feature:1073286-1073359:1:exon
so has part: feature:1073469-1074342:1:exon

XP_018737223.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1073286-1073359:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1073469-1074342:1:exon

AWJ20_2354
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ERJ5
locus tag: AWJ20_2354
so part of: sequence
location: <1076238..>1077074
location: region:1076238-1077074:1
so has part: feature:1076238-1077074:1:exon
subclass of: SO_0000010

30034256
type: Gene
SIO_000068: ncbigene

position:1076238:1
position: 1076238
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1077074:1
position: 1077074
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1076238-1077074:1:exon

AWJ20_2354
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ERJ5
locus tag: AWJ20_2354
product: Erj5p
transcript id: XM_018879293.1
SIO_010081: AWJ20_2354
subclass of: SO_0000673
so part of: AWJ20_2354
location: <1076238..>1077074
location: region:1076238-1077074:1
so has part: feature:1076238-1077074:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1076238-1077074:1:exon

AWJ20_2354
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ERJ5
locus tag: AWJ20_2354
note: Type I membrane protein with a J domain; required to preserve the folding capacity of the endoplasmic reticulum; loss of the non-essential ERJ5 gene leads to a constitutively induced unfolded protein response; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 17157937]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006457 - protein folding [Evidence IMP] [PMID 17157937]
codon start: 1
product: Erj5p
translation: MLVKYQLLISLLFTSLIGFVAAWSDQDLEIFALREQVEKDLGKGATFYDWLDVPQYAKDEQIAKAYRKLSRQLHPDKNSHRSSTEKYTRLSLIVNILRSESRERYDFFLSKGFPRWKGTGYYYNRYRPGLGTVLVFLYLFISGAQYLLMKISSDRDRAHMSNVIDEAKRLAWSGSTTPGVNMSSKRRVTLPNGKIFTVYPSGDVFIVDHDVEFHLNLDDIKSPTWKDTILYKLPIWIRALITGQQAEFNEPEGHKLSDPEPPKKKTPRPATKVAGRRK
SIO_010081: AWJ20_2354
subclass of: SO_0000673
so part of: AWJ20_2354
location: 1076238..1077074
location: region:1076238-1077074:1
so has part: feature:1076238-1077074:1:exon

XP_018737224.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1076238-1077074:1:exon

AWJ20_2355
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SAP190
locus tag: AWJ20_2355
so part of: sequence
location: complement(<1080036..>1081994)
location: region:1080036-1081994:-1
so has part: feature:1080036-1081994:-1:exon
subclass of: SO_0000010

30034257
type: Gene
SIO_000068: ncbigene

position:1080036:-1
position: 1080036
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1081994:-1
position: 1081994
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1080036-1081994:-1:exon

AWJ20_2355
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SAP190
locus tag: AWJ20_2355
product: Sap190p
transcript id: XM_018879294.1
SIO_010081: AWJ20_2355
subclass of: SO_0000673
so part of: AWJ20_2355
location: complement(<1080036..>1081994)
location: region:1080036-1081994:-1
so has part: feature:1080036-1081994:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1080036-1081994:-1:exon

AWJ20_2355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SAP190
locus tag: AWJ20_2355
inference: similar to AA sequence:KEGG_Orthology:K15458
note: Protein that forms a complex with the Sit4p protein phosphatase; required for Sit4p function; member of a family of similar proteins including Sap4p, Sap155p, and Sap185p; SAP190 has a paralog, SAP185, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 8649382]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IGI,IMP,IPI] [PMID 8649382]; GO_process: GO:0031929 - TOR signaling [Evidence IMP] [PMID 15367655]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0016311 - dephosphorylation [Evidence IMP] [PMID 15367655]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IGI] [PMID 18755837]
codon start: 1
product: Sap190p
translation: MLYGGSGLGTGVGVIIEIIRKNNSDYDLVPVLLITLESHPPGPRDPIYLGTLVKLFAESIPKFQAILAREHKEQFETPFGKIEPLGFERFKICELFAELLHCSNMSLLNDPAGEGIIKTRDEERERVKKIIARARGEIESVGQDDELVDELRTEKSVDSEDAEKDKDVELTEADESDKTELTDSVAASGLDKQEGATGKPAGGTDRAIEADIGGLSIKTDDEKLAGIANGLRSDDDESESGGGTDYQSAISEDDDSNEKGNNSALDLDEGDDLTLAQSLAQQEATIRKNPVVGDQLKIALADNKCITTILEMFFKFPWNNFLHNVVFDIVQQILNGPIQEGYNKFLAIDLFGEGRLTQVIYEGHAACEQHERDHKTRLGYMGHLTLISEEVVKFTALYTAESVSPVVAEAVSKPEWIHYVTHTLVRTREQYNTILGGKRPDGSEYGQNPNAIILGNGDDNDDNDGDVGSELGEEESPGGFHQRHDGNGGDDDDDEDDDMVSEHHRHGHNEFGYHDDDEDDEDDVSGHGGAGNASNGSRKVGGSNTGSGSVDIDGSGDQFARYMSQQISGTGHFGSSDEDDDDEEWENDRSDYRGAYSAGNNGGSRFDGATHSTPGAGGSTLSYGLSPSAEDEDDDEDDDLGLVRSRSYNDMN
SIO_010081: AWJ20_2355
subclass of: SO_0000673
so part of: AWJ20_2355
location: complement(1080036..1081994)
location: region:1080036-1081994:-1
so has part: feature:1080036-1081994:-1:exon

XP_018737225.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1080036-1081994:-1:exon

AWJ20_2356
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SAP190
locus tag: AWJ20_2356
so part of: sequence
location: complement(<1082214..>1083530)
location: region:1082214-1083530:-1
so has part: feature:1082214-1083530:-1:exon
subclass of: SO_0000010

30034258
type: Gene
SIO_000068: ncbigene

position:1082214:-1
position: 1082214
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1083530:-1
position: 1083530
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1082214-1083530:-1:exon

AWJ20_2356
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SAP190
locus tag: AWJ20_2356
product: Sap190p
transcript id: XM_018879295.1
SIO_010081: AWJ20_2356
subclass of: SO_0000673
so part of: AWJ20_2356
location: complement(<1082214..>1083530)
location: region:1082214-1083530:-1
so has part: feature:1082214-1083530:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1082214-1083530:-1:exon

AWJ20_2356
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SAP190
locus tag: AWJ20_2356
note: Protein that forms a complex with the Sit4p protein phosphatase; required for Sit4p function; member of a family of similar proteins including Sap4p, Sap155p, and Sap185p; SAP190 has a paralog, SAP185, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 8649382]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IGI,IMP,IPI] [PMID 8649382]; GO_process: GO:0031929 - TOR signaling [Evidence IMP] [PMID 15367655]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0016311 - dephosphorylation [Evidence IMP] [PMID 15367655]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IGI] [PMID 18755837]
codon start: 1
product: Sap190p
translation: MAFWRIGNGFSSVSPIDKILDKNDHTLVDLLNEPDLLQELLAPNTKLIEYLRQPDVMAEMIRYIADMNDKLEDEGDSGGGSSTTGASGKATTADSNVSAGGDSGARAGAKHGLDDKPLPSTPVSSEMTDVDDDDNGELDLHTGSADVDMAESGSLSTETEYDSTNTTSSTTKAAKRSRESDSDSSSDKDEDDNNNESSTSNQDTGSASASSASAPKTGVSNKVKHGLLNRTGYTDDDEDEEDEDDEDDNNSNQSGNEAYDSSFDDIQETKQRHAQVCSEILSADVWSLTEALMECTDLIEEIWKILDYPTPLDISYASYFTKISEHLLDKKTDEMLAFIRSQKSFVKRFMKHIDNPPLMDFLLKVISSDKSDNSTGIIDVSVSPDASGGWGCAPDPPAPLAALESVRLRSQQLLRSRSHGVWGAAPADGGTLAPRREY
SIO_010081: AWJ20_2356
subclass of: SO_0000673
so part of: AWJ20_2356
location: complement(1082214..1083530)
location: region:1082214-1083530:-1
so has part: feature:1082214-1083530:-1:exon

XP_018737226.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1082214-1083530:-1:exon

AWJ20_2357
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2357
so part of: sequence
location: <1086639..>1089113
location: region:1086639-1089113:1
so has part: feature:1086639-1089113:1:exon
subclass of: SO_0000010

30034259
type: Gene
SIO_000068: ncbigene

position:1086639:1
position: 1086639
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1089113:1
position: 1089113
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1086639-1089113:1:exon

AWJ20_2357
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2357
product: hypothetical protein
transcript id: XM_018879296.1
SIO_010081: AWJ20_2357
subclass of: SO_0000673
so part of: AWJ20_2357
location: join(<1086639..1086772,1086965..>1089113)
location: region:1086639-1089113:1
so has part: feature:1086639-1086772:1:exon
so has part: feature:1086965-1089113:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1086639-1086772:1:exon

position:1086772:1
position: 1086772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1086965-1089113:1:exon

position:1086965:1
position: 1086965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

AWJ20_2357
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2357
codon start: 1
product: hypothetical protein
translation: MSGELLPTTSKRTSAKSKPWIRAKSAGKTARSSSWTGALTSNVIRLFVYYLIYLSIWKCPPGAELSEESPCLCSPLHKTFDLVSPHVSPIHEKFAEYAHPYVDSAKPYVEKVRPYVQKGVDSGVGAYNAYVQPPVSKAAAKAHSVVIAPYQEKVFELHDKHVQPLVNRAHQFHADKVAPLIEQSYKGSKNVYSSYVIPTYEKVHPHVSKAHGAVKEHVWPRLSDAHGKFSELVILYFELVKNWFADAVQPKVKSVYQDAVEPQINKIYDRVAPNRGDSESDETVVAETTEITASASAAGSTAVNSETGSGVVRQKLESLAAVINDGAAAASEAVAAGIGAATANVAGVVSADDTASAGSSARKASEKHKKIVSISEELAKWKEIVDKTSLEAFATFLDDIEQEKHVLVEEARGEFTTLLQKLSQYENEAYKELSALVQRIDDEQEEGQAVDEEVSTGLVQSEFRRHADLIRTGAMAVRERSEKLAADVLQKTEEVRSITVDILDEFAEVTLHELGRKMVSINSLSATQSTSSAQDSDSIPNWKDWKEFRSLKDRLYSSRQDIVDHEVNMADVNKMLREAQETANLLAKESAQLLSGLRSKADFGFQQRLSRRAESDEQLDFDETPVDAEIYDELEEDEEPTTITQTIYETYTQVTSELLPESTERSEIEPTDISGVEEVVEPTEISDLEEIVEATETEDAAEPEETAEAADEVANEASDEATNETADDAEVSEQAVQPVLVNAPELDNVETKKEPVHDDL
SIO_010081: AWJ20_2357
subclass of: SO_0000673
so part of: AWJ20_2357
location: join(1086639..1086772,1086965..1089113)
location: region:1086639-1089113:1
so has part: feature:1086639-1086772:1:exon
so has part: feature:1086965-1089113:1:exon

XP_018737227.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1086639-1086772:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1086965-1089113:1:exon

AWJ20_2358
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: FRE2
locus tag: AWJ20_2358
so part of: sequence
location: <1090623..>1091834
location: region:1090623-1091834:1
so has part: feature:1090623-1091834:1:exon
subclass of: SO_0000010

30034260
type: Gene
SIO_000068: ncbigene

position:1090623:1
position: 1090623
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1091834:1
position: 1091834
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1090623-1091834:1:exon

AWJ20_2358
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: FRE2
locus tag: AWJ20_2358
product: Fre2p
transcript id: XM_018879297.1
SIO_010081: AWJ20_2358
subclass of: SO_0000673
so part of: AWJ20_2358
location: <1090623..>1091834
location: region:1090623-1091834:1
so has part: feature:1090623-1091834:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1090623-1091834:1:exon

AWJ20_2358
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: FRE2
locus tag: AWJ20_2358
note: Ferric reductase and cupric reductase; reduces siderophore-bound iron and oxidized copper prior to uptake by transporters; expression induced by low iron levels but not by low copper levels; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8164662]; GO_function: GO:0052851 - ferric-chelate reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence IDA] [PMID 8164662]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0015677 - copper ion import [Evidence IDA] [PMID 9153234]; GO_process: GO:0006825 - copper ion transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0006826 - iron ion transport [Evidence IDA] [PMID 8164662]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]
codon start: 1
product: Fre2p
translation: MSPAGKNRTSFAEICALSGDIINVRVRATVVWRPLPGEYVFIYINRKLWDAHPFSVVGPSSDGESFQLLCKARKGMTRRISKMLKSKGADKDHPSTIPVLIEGPYGVHCPVERYGEVLLIAGGVGITGVIPYVEYLTHSPDANPTRIKFVWAVQSRSDTRWIEERLLRLSNKVEIVVYAAARTAAKENQDVLKSFVYEDPLESDYPYANNNPYETDEKDPTTGKHAEFHFVGDDGDDNLSTTSSRYPESNDHDRERHDEKPQDLTSEYGRSLTLKVTGQRARPAVSGISSPKPPLPLPPKDFHGHMYGSMHTLNIEGTTAANSLVTKSHRRRLSRMEWYQRIQNGRADINTLVKEFFIGSSASACVLGCGPPPMMDTMRQSVAQHLDLNEHGRVDYFEEAYSW
SIO_010081: AWJ20_2358
subclass of: SO_0000673
so part of: AWJ20_2358
location: 1090623..1091834
location: region:1090623-1091834:1
so has part: feature:1090623-1091834:1:exon

XP_018737228.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1090623-1091834:1:exon

AWJ20_2359
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SEC2
locus tag: AWJ20_2359
so part of: sequence
location: <1093032..>1095101
location: region:1093032-1095101:1
so has part: feature:1093032-1095101:1:exon
subclass of: SO_0000010

30034261
type: Gene
SIO_000068: ncbigene

position:1093032:1
position: 1093032
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1095101:1
position: 1095101
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1093032-1095101:1:exon

AWJ20_2359
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SEC2
locus tag: AWJ20_2359
product: guanine nucleotide exchange factor SEC2
transcript id: XM_018879298.1
SIO_010081: AWJ20_2359
subclass of: SO_0000673
so part of: AWJ20_2359
location: <1093032..>1095101
location: region:1093032-1095101:1
so has part: feature:1093032-1095101:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1093032-1095101:1:exon

AWJ20_2359
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SEC2
locus tag: AWJ20_2359
codon start: 1
product: guanine nucleotide exchange factor SEC2
translation: MESSSSVAPSAHSEAPVSSSAISDLDSEVRFLNTRIVDMINSNTEIEDKLRTANRELIQMTDTKVDLEDQLRVTRQELDDARRAKILLEDQIEKDYVSRQEYDRVVELQKKAEKDAEGLHAEIEDLTGSLFNEANILVAEANKEKARLQMQLEERDVLLDNYKSQVSELKDIIQRLKDEEEMGEVNSNRRSLMSTPPPPPLPEGDDGYRPIGSAVSVASSLTGTTGDAGSSGDGHADSSIGTNGAGGTGTGSSDFGLSTGLSAMTLASVSGKPGAVTTGHHFGDDTDSPGAPDDAIYWSLNDKSALYSQIRPILRKDTPVFEDFKSFVNHTSSNPFAALTNNSHNHNQTSTASAYFHTPGGFPGSFPVNPRVTASSPTVPSTSSPKSGADSSPRSTVTSTATSTSTSTSTATTTTSTATSYVHINTAPLSSFKLYKRCLSEDIEPTLRLDLAPHISWYAKKGVMNSIVDGTAIVEPISGVNEGAAIRGQNRPVATVSPCSFCGEARDSSIVYLRMHNLRISKGQSHNTSTNTFTSSNSSSSSAVTTSTTTSTTTVSSGHPLCHYCLTRVRTVCDFTAFLRSVRDRVWKVDEEEGLNRAWDELARLRERMLWAREGAIFPPPMIFGPSLRTARTHTPIQSKESAPLDTEEKLEKPNQLDTPDSTNPSTDAKDEDASSVAVSADDEVYTSA
SIO_010081: AWJ20_2359
subclass of: SO_0000673
so part of: AWJ20_2359
location: 1093032..1095101
location: region:1093032-1095101:1
so has part: feature:1093032-1095101:1:exon

XP_018737229.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1093032-1095101:1:exon

AWJ20_2360
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: POT1
locus tag: AWJ20_2360
so part of: sequence
location: <1096308..>1097564
location: region:1096308-1097564:1
so has part: feature:1096308-1097564:1:exon
subclass of: SO_0000010

30034263
type: Gene
SIO_000068: ncbigene

position:1096308:1
position: 1096308
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1097564:1
position: 1097564
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1096308-1097564:1:exon

AWJ20_2360
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: POT1
locus tag: AWJ20_2360
product: acetyl-CoA C-acyltransferase
transcript id: XM_018879300.1
SIO_010081: AWJ20_2360
subclass of: SO_0000673
so part of: AWJ20_2360
location: <1096308..>1097564
location: region:1096308-1097564:1
so has part: feature:1096308-1097564:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1096308-1097564:1:exon

AWJ20_2360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: POT1
locus tag: AWJ20_2360
inference: similar to AA sequence:KEGG_Orthology:K07513
note: 3-ketoacyl-CoA thiolase with broad chain length specificity; cleaves 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA during beta-oxidation of fatty acids; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 7754706]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA,IMP,ISM] [PMID 8125978]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 19470242]; GO_function: GO:0003988 - acetyl-CoA C-acyltransferase activity [Evidence IEA]; GO_function: GO:0003988 - acetyl-CoA C-acyltransferase activity [Evidence IDA] [PMID 7754706]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 21124907]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_function: GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IMP] [PMID 12819196]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA,IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]
codon start: 1
product: acetyl-CoA C-acyltransferase
translation: MERLSNIASQVAPSNASAVSKLAEKHPDDVVIVAAYRTAHTRGGKGKFKDTTSGEILAGLLKGIVEKSGIDPASIQDIVVGNVCNPGAGVNEHRAAQLYAGIPYTVPFQALNRQCSSGLMAVNDIANKITAGQIDIGIGAGVESMSQNYGPNVLGAQPASFLEHPVASKCLIPMGITSENVAEKYNVSRRAQDEFAANSYQKAAKAQDAGLFKDEILPIETTIVEEDAEGNEKETKVIVDTDEGIRRGVTADSLAKVRPAFKADGSTHAGNASQVSDGAGAVLLMRRSTAEKLGKPILAKYVHAKVVGVPPEIMGIGPAVAIPALLKDLGLTVDDVDVYEINEAFASQALYSVRSAGIDINRVNPKGGAIAFGHPLGATGARQFATLLTELKRTKKKVGVTSMCIGTGMGAASLVIAE
SIO_010081: AWJ20_2360
subclass of: SO_0000673
so part of: AWJ20_2360
location: 1096308..1097564
location: region:1096308-1097564:1
so has part: feature:1096308-1097564:1:exon

XP_018737230.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1096308-1097564:1:exon

AWJ20_2361
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2361
so part of: sequence
location: complement(<1100322..>1102295)
location: region:1100322-1102295:-1
so has part: feature:1100322-1102295:-1:exon
subclass of: SO_0000010

30034264
type: Gene
SIO_000068: ncbigene

position:1100322:-1
position: 1100322
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1102295:-1
position: 1102295
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1100322-1102295:-1:exon

AWJ20_2361
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2361
product: catabolite repression protein creC
transcript id: XM_018879301.1
SIO_010081: AWJ20_2361
subclass of: SO_0000673
so part of: AWJ20_2361
location: complement(<1100322..>1102295)
location: region:1100322-1102295:-1
so has part: feature:1100322-1102295:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1100322-1102295:-1:exon

AWJ20_2361
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2361
codon start: 1
product: catabolite repression protein creC
translation: MFILPPPPKYYGTGAFPHNLPALEATNSRTVLDQTQNFSAPEGVYEAQDCLFLAMPLPHPSDPPPVVINPLAPTINQPSSHSSGVRVSTLVVRQTTDKSVGGAAGHAVSQMPGMKKRPSVASSNRPSFGGWTSSLLKKSSVGSETSGAAAGGGVITASSRAGASSQVTLDSTSSNDSPEFSSSTSLPLSVVLNSATGTVSSGGSGAGAGAGSAANGGLRRKPKNSLTKNNSSFISRTIVHENLSKRLQEHSLDDVFIWANVGRSLSWISTANPSIKHEALTKILFTKAHPLCHDMNITTASMQNVDVVIGTSAGDAIWIDAITNKYNRINKNGDVTRSPITSIKWIPGSENFFITGHADGSLAIFDKDRDNSGFSLSDSAGSQDPRSTDTFRIIKSFTTALNNSSNNKSGELLNPIAVYKVSNSPVTALEFSPTGDILSISSNDGYLRLLDLANEQMYDIFPSYYGGFICTAFSSDGEYFATGGQDDMVCVYSVRNKSLVARLQGHRSWVRQVRFDPWTSDSSNYRLGSIGEDGTLLLWDFSPKTLTRPKAMMTQHSRKKSIQFSENCDPNGSTSGLSIGDTSSTSKTFTSKRSSATTLHSFISQNDTPILPPVVKKSVHVAEAEPEPLSDLVFLPKAIMVVGKDGRIWTWGRPKTV
SIO_010081: AWJ20_2361
subclass of: SO_0000673
so part of: AWJ20_2361
location: complement(1100322..1102295)
location: region:1100322-1102295:-1
so has part: feature:1100322-1102295:-1:exon

XP_018737231.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1100322-1102295:-1:exon

AWJ20_2362
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: adn3
locus tag: AWJ20_2362
so part of: sequence
location: complement(<1103117..>1105354)
location: region:1103117-1105354:-1
so has part: feature:1103117-1105354:-1:exon
subclass of: SO_0000010

30034265
type: Gene
SIO_000068: ncbigene

position:1103117:-1
position: 1103117
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1105354:-1
position: 1105354
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1103117-1105354:-1:exon

AWJ20_2362
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: adn3
locus tag: AWJ20_2362
product: transcription factor (predicted)
transcript id: XM_018879302.1
SIO_010081: AWJ20_2362
subclass of: SO_0000673
so part of: AWJ20_2362
location: complement(<1103117..>1105354)
location: region:1103117-1105354:-1
so has part: feature:1103117-1105354:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1103117-1105354:-1:exon

AWJ20_2362
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: adn3
locus tag: AWJ20_2362
codon start: 1
product: transcription factor (predicted)
translation: MKRGPSKRPRSDSLDSEYMRRNSLPSIAPVSPHHRASFGAVGSTGPLQPLNNGQHQQQQQQQVQQQVQQQVQQQVQQQVQSHVTQNETQNQTQAQSQSIPQHQQPPRLAAISSPGSRYERLPSIDTLTYGGSAGVSDSLSPKASGSNSNGSGGLVPGPSSAGPGGPSSPSWPPVHGLPTPPPPPQNHSPLLSATSPLPAFPSVMSSRPSGGSPAGSANNRPVQTKPRASSFNLPVPTTATTTTNSIINHPNSNGNNYFSKASTNSSAPAYRRSTRHSSISSIDSFDSDASSGGLSPANYQSSRSNSNTSAMSMPDISNLNTNFPGWNDRFIDSYYQLIHPTLPVLPPSKVQLRARLEKCSNPDIRFALLSTISGLIYSSENGRNSSELAHYRGQALQALANSTVSPSDNKQTEIIRLMTLILFYLQTRQSSWLGAAISQAYSMSLHITSPRHGIYARQGSAGSIGSVSPGRYDSATDSEDDAKVCRRLFLVLVILDRMNSAVHSHIPLQIPDHYVTSEQDDLDSFAGNRSNVEMVRLCMNLGRVSKLLEESRPLGTLPESRSVLRLCGDLDSIGRSLEGLWDTVPILKAVYYFARLILDRVAPTANIINDATTLSFLMDSPLVTVSPLLAFFIPVLIETLRNRSHEQTKSSSSMANETNRLYEFLERTVERKFPEYEAMIRNLHSQITPPPPPSQVPQVPHSPQQPQQLSPAAHPTSTTMTPPIILLSNHQRLEGLAHVAHLAER
SIO_010081: AWJ20_2362
subclass of: SO_0000673
so part of: AWJ20_2362
location: complement(1103117..1105354)
location: region:1103117-1105354:-1
so has part: feature:1103117-1105354:-1:exon

XP_018737232.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1103117-1105354:-1:exon

AWJ20_2363
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2363
so part of: sequence
location: <1110395..>1112869
location: region:1110395-1112869:1
so has part: feature:1110395-1112869:1:exon
subclass of: SO_0000010

30034266
type: Gene
SIO_000068: ncbigene

position:1110395:1
position: 1110395
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1112869:1
position: 1112869
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1110395-1112869:1:exon

AWJ20_2363
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2363
product: hypothetical protein
transcript id: XM_018879303.1
SIO_010081: AWJ20_2363
subclass of: SO_0000673
so part of: AWJ20_2363
location: <1110395..>1112869
location: region:1110395-1112869:1
so has part: feature:1110395-1112869:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1110395-1112869:1:exon

AWJ20_2363
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2363
codon start: 1
product: hypothetical protein
translation: MEQASATVEVAGREGTSRRRRPPRKKPEAGSVADSQNGPSIDGSNGTGNSSSRRGPGRNQGQNSRRNAKSNAQNGSSGETATAGPGSESTSEVSKSNGGPRHGKQSRPRNNRNQKQGSENGLSNRDSSKNSRKPTPRVSKRDQELSQVLELYGIADSAGDAGSTSGSTSTPAYTLALAPSDPDFPFDMDFLIFRFYLPLDYPVSRPWISVENSDIPKGYSANVEMGFRQIATKATKNPNLMKMLQELNTNLETFLKMEKQQTIKIVKHKQVAKTGDSRANDGSSAGAGSGGVSSSATSPSPQTTNGSAFNPMKMSFVPKAMSDKRKRQMDILIKRLGDVCQYNPQASTSQIKVTITPAHSEILPETLNTPFVVTLKVPEDYGISPCTITLPNNDDASFNVMNNFNAHAKAVMKSWSLLALMNYLTVELESLMLPSWVSDKQKSQLAAQETAQKVKNTESSTPIESKSETVNEVGEVTATVDTAISTTSNTAEETSKVDADSVSDSDVDSRSPESDADSDSESDSDDEDKTYTTKSTNSGLASDQLKKTGTAVDLIDIQMTNIGFLECHALSLVLACNKCKTENEVHNVVSGPYGRESKATPLRCEKCNSLLAVAFRKNFLHSHSNNAGYLDLSGCSAADILPSAFSPTCGQCTTSWPQAFRRVEFGRVNNFNCRECHAKLSLLIPGFSFDVISTENLAKDRINANLAKRKDKTQSLGLVGGTPLPNNGSCQHYKKSNRWFRFSCCSKVYPCDRCHDEKANHPNERAHRMICGKCSREQNFSDVCLFCRHSFDNKHSPFWEGGKGTRDKVKMSRKDPHKYKRVKN
SIO_010081: AWJ20_2363
subclass of: SO_0000673
so part of: AWJ20_2363
location: 1110395..1112869
location: region:1110395-1112869:1
so has part: feature:1110395-1112869:1:exon

XP_018737233.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1110395-1112869:1:exon

AWJ20_2364
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2364
so part of: sequence
location: <1115209..>1115835
location: region:1115209-1115835:1
so has part: feature:1115209-1115835:1:exon
subclass of: SO_0000010

30034267
type: Gene
SIO_000068: ncbigene

position:1115209:1
position: 1115209
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1115835:1
position: 1115835
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1115209-1115835:1:exon

AWJ20_2364
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2364
product: hypothetical protein
transcript id: XM_018879304.1
SIO_010081: AWJ20_2364
subclass of: SO_0000673
so part of: AWJ20_2364
location: <1115209..>1115835
location: region:1115209-1115835:1
so has part: feature:1115209-1115835:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1115209-1115835:1:exon

AWJ20_2364
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2364
codon start: 1
product: hypothetical protein
translation: MFVRNLARVARQQQTGVARSWIRSFVQLREVPTDVYGHTTPNESGVRLSLSKKPNAVYIGTIPNSAVASFRQAFEAEKEAKDDQDDREMHPSQLLDPGEFSSHQKFLDIAHKTIGEHIQNCPVFSQLAAAEQGEKSLFFHIYDLRRPPPHGRIPEVEDIVGTVRLESGKIVPNSYEPNAMYRSVTPYGIFTVSDYLNSKIVSECEKSS
SIO_010081: AWJ20_2364
subclass of: SO_0000673
so part of: AWJ20_2364
location: 1115209..1115835
location: region:1115209-1115835:1
so has part: feature:1115209-1115835:1:exon

XP_018737234.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1115209-1115835:1:exon

AWJ20_2365
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: VID30
locus tag: AWJ20_2365
so part of: sequence
location: complement(<1116038..>1118752)
location: region:1116038-1118752:-1
so has part: feature:1116038-1118752:-1:exon
subclass of: SO_0000010

30034268
type: Gene
SIO_000068: ncbigene

position:1116038:-1
position: 1116038
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1118752:-1
position: 1118752
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1116038-1118752:-1:exon

AWJ20_2365
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: VID30
locus tag: AWJ20_2365
product: glucose-induced degradation complex subunit VID30
transcript id: XM_018879305.1
SIO_010081: AWJ20_2365
subclass of: SO_0000673
so part of: AWJ20_2365
location: complement(<1116038..>1118752)
location: region:1116038-1118752:-1
so has part: feature:1116038-1118752:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1116038-1118752:-1:exon

AWJ20_2365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: VID30
locus tag: AWJ20_2365
note: Central component of GID Complex, involved in FBPase degradation; interacts strongly with Gid8p to serve as a scaffold for other GID Complex subunits; contains SPRY domain and 3 domains that are also found in Gid8p - LisH, CTLH, and CRA; required for association of Vid vesicles and actin patches in vacuole import and degradation pathway; shifts the balance of nitrogen metabolism toward glutamate production; localizes to the nucleus and the cytoplasm; GO_component: GO:0034657 - GID complex [Evidence IDA] [PMID 16872538]; GO_component: GO:0034657 - GID complex [Evidence IDA] [PMID 18508925]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0045721 - negative regulation of gluconeogenesis [Evidence IMP] [PMID 12686616]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12686616]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 15358789]; GO_process: GO:0006808 - regulation of nitrogen utilization [Evidence IMP] [PMID 11356843]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence IMP] [PMID 8844145]
codon start: 1
product: glucose-induced degradation complex subunit VID30
translation: MSPVNRGSSVSTLGTASVSSGGSPEDSRFDEDGRTPSVVPGVGGGLSSGLSDSLSVGSLSSFGAVGLGLPASVPKIPGYLALTAYGERFYSFLELDRPVSGDVSLGSNGRSRSKSMSTVSRSVGGSTGAGAAGSVSGGSARSTGNGTSLAGSISGLSAGLGSGSGFDSAGSGAGSGGSNSSGSGSSGVSGSGSGGRSSGSENQQLEVTASEFNLPQMFPSRRAAELDALGMWQYPRAPATSLPSSSLSLSAIEVPLDMYLRSNAGRRVYRDGNWTEVGSGSTGSTGQEASSVSADNSATTGSGTGSRSSEENQQQQTVSGLRRLAAGSGSGSGSGSGAAASMSISSLTSSSSASTVSQPNNNNYLLNSSSSSSSNTAKPLSSTSTLGSNGGLSASRSGTTVDSSIPSRKDIGLPPLPTRWAKPEIDQNVGLDSEGTRIDYSVVQTKPSSSSSSPHSVAVLKTSHAIPPLCGVFYYEVEVLEHGIEEFISVGICDIEAGLTKVPGMDSRTWGFHGDDGRISAGQSQSKSFGPKINVGDVIGCGVNFYKDSIFYTKNGLPLGTAFQDVKGILFPCIGLKSGEIVHTNFGSEEFRFDIEEYVMTMKNKVLTQIDLSKPPANMIDELDPVSGRSGASNSDPDDTSKDWRFIKDIVASYFNHVGYIETAKAFDKERKNEEKAINFEQLDDESSLMDIDETPNNNNNNDEDDEMLNEEDKKMKLDVLNRQRIRSYILDEDIDGALKLLNVFYPTVLEDNYLIKFKMHCRKFVSLVRKSIPSASSSSSPSSSTSTSHRDYLNAAIQYGQDLRKEYKNDTNPTITSTLSTIFSLLAYEDPGSSPELAYIISNQELVPLAEELNSAILVSQGKPAVPSLQRLAEHCTQLVWELSDQGYHPSSLLNVKRDFLDT
SIO_010081: AWJ20_2365
subclass of: SO_0000673
so part of: AWJ20_2365
location: complement(1116038..1118752)
location: region:1116038-1118752:-1
so has part: feature:1116038-1118752:-1:exon

XP_018737235.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1116038-1118752:-1:exon

AWJ20_2366
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SPN1
locus tag: AWJ20_2366
so part of: sequence
location: <1120497..>1121939
location: region:1120497-1121939:1
so has part: feature:1120497-1121939:1:exon
subclass of: SO_0000010

30034269
type: Gene
SIO_000068: ncbigene

position:1120497:1
position: 1120497
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1121939:1
position: 1121939
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1120497-1121939:1:exon

AWJ20_2366
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SPN1
locus tag: AWJ20_2366
product: Spn1p
transcript id: XM_018879306.1
SIO_010081: AWJ20_2366
subclass of: SO_0000673
so part of: AWJ20_2366
location: <1120497..>1121939
location: region:1120497-1121939:1
so has part: feature:1120497-1121939:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1120497-1121939:1:exon

AWJ20_2366
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SPN1
locus tag: AWJ20_2366
inference: similar to AA sequence:KEGG_Orthology:K17498
note: Protein involved in RNA polymerase II transcription; is constitutively recruited to the CYC1 promoter and is required for recruitment of chromatin remodeling factors for the expression of CYC1 gene; interacts genetically or physically with RNAP II, TBP, TFIIS, and chromatin remodelling factors; central domain highly conserved throughout eukaryotes; mutations confer an Spt- phenotype; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 12524336]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 12556496]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 18086892]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 21094070]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 21156811]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0001076 - RNA polymerase II transcription factor binding transcription factor activity [Evidence IPI] [PMID 12556496]; GO_function: GO:0000991 - core RNA polymerase II binding transcription factor activity [Evidence IPI] [PMID 12556496]; GO_function: GO:0000991 - core RNA polymerase II binding transcription factor activity [Evidence IPI] [PMID 18086892]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence IMP] [PMID 19034519]; GO_process: GO:0034401 - regulation of transcription by chromatin organization [Evidence IPI] [PMID 21094070]; GO_process: GO:0034401 - regulation of transcription by chromatin organization [Evidence IMP] [PMID 21156811]; GO_process: GO:0034243 - regulation of transcription elongation from RNA polymerase II promoter [Evidence IGI] [PMID 18086892]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 12524336]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IGI,IPI] [PMID 12556496]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcrip…
codon start: 1
product: Spn1p
translation: MSDEESRHADAADDRLESEPHRSDEEVEVADDDAVEGVGAQDETDVGGENSAENDAGEQAGEGAEVEEENGEENAKENDEGADGNNGEDDDGLEDLPEEDDEDDNGESSKKNAEKTFGDSESELSDLDEDAFEDENEKIIDESVFNSIKSHKRSSGASTSSTKKEKTRPKKSHLDGEIVSDNEDYPSEYQKESLEDLDPETRARRELEMKLDAALKKPSSKRRKLDGDDIEQMQDEKISHLREQMRGAAIADAECIKNGVPAINKLKLLPAVRDVLNKQNLADSILDNNLLEAVRQWLEPLPDASLPGYEIQKELFAAIDRLPIKTIHLRESGLGKVVLFYQKSKRPQLTIKRTADKLIGKWTRPIMGRSDNYRDKEVVSRSYDPYEMARQIALGQRRASTHEQVSLAEEAAARRNRAAIPTVKPVTFDVAPQSNLSTQFTARRPTGEDQFRKIKQRMTASRSVKTRKSGVSIEGKELKH
SIO_010081: AWJ20_2366
subclass of: SO_0000673
so part of: AWJ20_2366
location: 1120497..1121939
location: region:1120497-1121939:1
so has part: feature:1120497-1121939:1:exon

XP_018737236.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1120497-1121939:1:exon

AWJ20_2367
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: IES1
locus tag: AWJ20_2367
so part of: sequence
location: complement(<1124688..>1127354)
location: region:1124688-1127354:-1
so has part: feature:1124688-1127354:-1:exon
subclass of: SO_0000010

30034270
type: Gene
SIO_000068: ncbigene

position:1124688:-1
position: 1124688
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1127354:-1
position: 1127354
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1124688-1127354:-1:exon

AWJ20_2367
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: IES1
locus tag: AWJ20_2367
product: Ies1p
transcript id: XM_018879307.1
SIO_010081: AWJ20_2367
subclass of: SO_0000673
so part of: AWJ20_2367
location: complement(<1124688..>1127354)
location: region:1124688-1127354:-1
so has part: feature:1124688-1127354:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1124688-1127354:-1:exon

AWJ20_2367
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: IES1
locus tag: AWJ20_2367
inference: similar to AA sequence:KEGG_Orthology:K11675
note: Subunit of the INO80 chromatin remodeling complex; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0031011 - Ino80 complex [Evidence IDA] [PMID 12887900]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 24034245]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0042766 - nucleosome mobilization [Evidence IDA] [PMID 12887900]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]
codon start: 1
product: Ies1p
translation: MENSRRPSMIVHIPVSLAENGDRPAAGAATEDQPVQPKRSSFSVAGLLNDVDEDTKSPAVHHQGPVIPGSAAVNSTGHISYGVAGATGGDQNGGGLGSGPAGNGSVAAGIAGQVTDSGVAIGAADGSGTGIGGTVAGGGLVAGGGPDSGVGFGPGSGVIVGAGSPDPNLVGQSLDTFVQPEDIRAGSTPRGKGKRGSISRASGATGESDLSTPKSGGKVKRKGGKPGRKPSLTGAAGAGTGSTGGSQDGSTTAGSTPSSGAKRTYNRTYQTLLIATKVRHLKKGDGEPLWRVDIQYDFLSSVFNNTAEVFGNSYAGTGSNYTFADIYVDAMARSSKCSKVLREKLLGDKKAGLNMAMVCLLVNVGRMNTTLNFFPEMKAQLRTYHPIPSLQSRSNQSDYKQLQDAPRLKSILKGACEDRPEPGTLEDLMAPERAKPRTNPINLLFLLSTYASKVEETYFTDNFEFFDLIMNKELSSESRARAFLWLVYAYLETDGSREQLLANPFGVGQQDGQRIPALRRLSPEEVELENVDPISEKEFGAEMTKVRAQYLIQTNQVPDDGSGMAALAAGLGGTSDSANTSMTTPLGETPVRRGGSTGRGGRRLLDDSHNTPSGGSKKRKVGTPTKRTLRARSAYNYKEVGEDEEEPDASREMDYDNQHGQFPSHDQQQQQLQPLQSQAHGPTGHKTKVKLTVKLVKRSKQEEQRELLVSHRIKQMLQEKYQRRRAVRRRQGALRRTWTKLKDLDALYNSDDELASLQHQEPALIASAAATSASLYDNAVSAASSTTDGTSQPRRRRSRKSSLAAPIISPALDEFPGDYGEEQTAITRALTRSLRWLETTNDSQSSSLNGNPDGDTETEPEHDAKRPLPAPSRPDVMGVHNLLQEVAS
SIO_010081: AWJ20_2367
subclass of: SO_0000673
so part of: AWJ20_2367
location: complement(1124688..1127354)
location: region:1124688-1127354:-1
so has part: feature:1124688-1127354:-1:exon

XP_018737237.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1124688-1127354:-1:exon

AWJ20_2368
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: KEX2
locus tag: AWJ20_2368
so part of: sequence
location: complement(<1127948..>1130788)
location: region:1127948-1130788:-1
so has part: feature:1127948-1130788:-1:exon
subclass of: SO_0000010

30034271
type: Gene
SIO_000068: ncbigene

position:1127948:-1
position: 1127948
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1130788:-1
position: 1130788
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1127948-1130788:-1:exon

AWJ20_2368
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: KEX2
locus tag: AWJ20_2368
product: kexin KEX2
transcript id: XM_018879308.1
SIO_010081: AWJ20_2368
subclass of: SO_0000673
so part of: AWJ20_2368
location: complement(<1127948..>1130788)
location: region:1127948-1130788:-1
so has part: feature:1127948-1130788:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1127948-1130788:-1:exon

AWJ20_2368
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: KEX2
locus tag: AWJ20_2368
inference: similar to AA sequence:KEGG_Orthology:K01341
codon start: 1
product: kexin KEX2
translation: MFDSHRKSRPHGRARPRPSWLSVLASSLYASSVAGVVSANNVLSHHDHENRVYFAVELHDVVDPASFSSKYADSHNWTFEQPLGSLKNHYLFSVEKDAASKDLLHNMGAGHTHPNHHLEGKLWHNSVQTDESIHKRRLDHHQELVVDGLKSLQVLVPHSLSKRLPIPVPAPPVDSSLQVIQDAMDYLQISDPLFPKQWHLINPIQPGHDINVTGVWYQNVTGKGIAVAVVDDGLDMDHPDLQANYFADGSWDFNDKGPDPRPRLADDHHGTRCCGEIAAVRNEACGVGIAYDSKIAGIRILSKQISEAEEALALNYGMDKNDIYSCSWGPPDDGIAMAAPGLVVKQAILNGVQNGRNKLGSLFVFASGNGAANGDNCNFDGYTNSIYSITVAAIDRQGMHPFYSEACSANMVVTYSSGSSDKIVTTDVHGLCTDQHGGTSAAAPIAAGIFALVLEVRPDLTWRDLQYLAMDTAVPVNIHEPGWQKTSIGKQFHHKYGYGKLDTYAIVERAKTWQVVKPQSWFFSPKAVVNGAIKFDPDGANGGSKSLISVTADELSKANVERIEHVNVLVNIRHINRGSLTVVLTSPDGVKSELAAPRIKDQSADGIVDWTFMSVAHWGESGVGDWQLHVYNNKKETLDGELVDWTLKLWGEAKDASKARLFSLDEDNKPDNEVTPPASTSSPVPVESTTSPSPPPPAETTAPAAAPPPAETTTQPPSEPSTNPASVPGAQTTPTTTATATKKPGADDEKVPVISSAPSATTSAAATASATATPSSIWSLIPTFGLTGKTLSWVYGSILIIAGFVLGVVSYIFLSRRKDLLARLRGRQSNSSYEFDLIPSAAEADEERELFGVDDSDESDDDDDHHHHPDDGLPPRSPSPNPDTKTQKTGRGIYDTYAKSKDVDDDTEIFRVDTDVSDDDDDDEVSHGSTSSSTNHDADSDQTQLL
SIO_010081: AWJ20_2368
subclass of: SO_0000673
so part of: AWJ20_2368
location: complement(1127948..1130788)
location: region:1127948-1130788:-1
so has part: feature:1127948-1130788:-1:exon

XP_018737238.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1127948-1130788:-1:exon

AWJ20_2369
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2369
so part of: sequence
location: <1134055..>1135047
location: region:1134055-1135047:1
so has part: feature:1134055-1135047:1:exon
subclass of: SO_0000010

30034272
type: Gene
SIO_000068: ncbigene

position:1134055:1
position: 1134055
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1135047:1
position: 1135047
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1134055-1135047:1:exon

AWJ20_2369
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2369
product: hypothetical protein
transcript id: XM_018879309.1
SIO_010081: AWJ20_2369
subclass of: SO_0000673
so part of: AWJ20_2369
location: <1134055..>1135047
location: region:1134055-1135047:1
so has part: feature:1134055-1135047:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1134055-1135047:1:exon

AWJ20_2369
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2369
codon start: 1
product: hypothetical protein
translation: MRDLTRDIVRGLTVLEMETVNLTNTCLNHASIEDKSITYADTVFPTFTFLSGMSYTPWRRSACLVGLGLAYNSISVIYRGNSFQPRFLGVLQRTGLSSLLFNAGVSPNSDIRYFGYPVVATGLWTIVSTLLADDSSHPFADPSTSAQTKIDTFVFSSHSLYKKEYDPEGLLGCVMTSVTMWLGSWYISSKLSPIESLLTGGSLASLGILLSKAFPQYVPISKPYWSPTFTLVAGGYSIVKYSLIELAIPYLPDFISYGLECLGRRSIEVYFSSAILHSILHKFGVDSFVKSKLAKYIGERGSDLAYVSLSNAFMILAAVQFVEHGIRLRF
SIO_010081: AWJ20_2369
subclass of: SO_0000673
so part of: AWJ20_2369
location: 1134055..1135047
location: region:1134055-1135047:1
so has part: feature:1134055-1135047:1:exon

XP_018737239.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1134055-1135047:1:exon

AWJ20_2370
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2370
so part of: sequence
location: <1136646..>1138725
location: region:1136646-1138725:1
so has part: feature:1136646-1138725:1:exon
subclass of: SO_0000010

30034274
type: Gene
SIO_000068: ncbigene

position:1136646:1
position: 1136646
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1138725:1
position: 1138725
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1136646-1138725:1:exon

AWJ20_2370
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2370
product: hypothetical protein
transcript id: XM_018879311.1
SIO_010081: AWJ20_2370
subclass of: SO_0000673
so part of: AWJ20_2370
location: join(<1136646..1137050,1137109..>1138725)
location: region:1136646-1138725:1
so has part: feature:1136646-1137050:1:exon
so has part: feature:1137109-1138725:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1136646-1137050:1:exon

position:1137050:1
position: 1137050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1137109-1138725:1:exon

position:1137109:1
position: 1137109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

AWJ20_2370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2370
codon start: 1
product: hypothetical protein
translation: MKLSTSALLASSIVSANGASLSLLNDLLDIVPILSPGPSSTSTDPNQYVNLFLGADGGGHVFPGPTLPFGMVKMGIDVINSAAGDAYSGYAPDGQVDGISMMHESGTGGAPEYGVVAQLPLTGNVNLAIDNSQPRPDNASIGYYQIFLQNGVEVEFAPTAHAGIYHYTFPADQAANVVVNITHHLRAPSRPYWTQYFTGGNVAVSSDLSQYTGESTFKGGWGEQGDWSIYFCGQFDTPAKSVSSFVGQASSSSLTASSSSQDQAAGVIFTFPDGATDVNSRVGISFLSTDQACANLAAEINHYDVQTTTSQALDAWQSEVFDKVTADTSNSTIATMLYSSLYATHLLPSNRTGENPLWTSSEPYYDDWFTIWDIFRCLTPLYNIMNPDHASGMVRGLIDTYKNNGYMPDARSANQNGRTQGGSNADIVLADAYIKNIGQGEINWNDGYSAMVKDAEVQPPNNNDPFAPDSSTKEGRGALPDWLKYGYITRNYTRSVTRTMEYAMDDFGLSVVAQGLGKTADYQKYLNRSANWRNIWNPEASAKGYSYKGFIQPRNSDGTFNNTNYDPMSCGGCYWGDDEYEGKPVEYGFAVPHDIATLVEYAGGDQTFIKRLDDMFGVYGGAVLGDIGNEPSFLTPFLYNFVNAQYKTVETTRYLINNHFNSGNSGLPGNSDA
SIO_010081: AWJ20_2370
subclass of: SO_0000673
so part of: AWJ20_2370
location: join(1136646..1137050,1137109..1138725)
location: region:1136646-1138725:1
so has part: feature:1136646-1137050:1:exon
so has part: feature:1137109-1138725:1:exon

XP_018737240.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1136646-1137050:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1137109-1138725:1:exon

AWJ20_2371
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_2371
so part of: sequence
location: <1138783..>1139100
location: region:1138783-1139100:1
so has part: feature:1138783-1139100:1:exon
subclass of: SO_0000010

30034275
type: Gene
SIO_000068: ncbigene

position:1138783:1
position: 1138783
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1139100:1
position: 1139100
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1138783-1139100:1:exon

AWJ20_2371
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_2371
product: hypothetical protein
transcript id: XM_018879312.1
SIO_010081: AWJ20_2371
subclass of: SO_0000673
so part of: AWJ20_2371
location: <1138783..>1139100
location: region:1138783-1139100:1
so has part: feature:1138783-1139100:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1138783-1139100:1:exon

AWJ20_2371
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_2371
codon start: 1
product: hypothetical protein
translation: MQAWLFWNLIGLYPITGTTTYLISAPFLSNFSLKLANGNTVTITAQNLAEDSYYVQGITLNGRPHNENWISHDDLFVNGGSLNFQLGTEPKNWDVGSVPPSPGHI
SIO_010081: AWJ20_2371
subclass of: SO_0000673
so part of: AWJ20_2371
location: 1138783..1139100
location: region:1138783-1139100:1
so has part: feature:1138783-1139100:1:exon

XP_018737241.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1138783-1139100:1:exon

AWJ20_2372
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PHO2
locus tag: AWJ20_2372
so part of: sequence
location: <1141365..>1143068
location: region:1141365-1143068:1
so has part: feature:1141365-1143068:1:exon
subclass of: SO_0000010

30034276
type: Gene
SIO_000068: ncbigene

position:1141365:1
position: 1141365
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1143068:1
position: 1143068
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1141365-1143068:1:exon

AWJ20_2372
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PHO2
locus tag: AWJ20_2372
product: Pho2p
transcript id: XM_018879313.1
SIO_010081: AWJ20_2372
subclass of: SO_0000673
so part of: AWJ20_2372
location: <1141365..>1143068
location: region:1141365-1143068:1
so has part: feature:1141365-1143068:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1141365-1143068:1:exon

AWJ20_2372
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PHO2
locus tag: AWJ20_2372
inference: similar to AA sequence:KEGG_Orthology:K02646
note: Homeobox transcription factor; regulatory targets include genes involved in phosphate metabolism; binds cooperatively with Pho4p to the PHO5 promoter; phosphorylation of Pho2p facilitates interaction with Pho4p; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 1493793]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 2664469]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IDA,IMP] [PMID 3303332]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IDA,IGI,IMP] [PMID 7902583]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IDA,IGI,IMP] [PMID 9566882]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IMP] [PMID 2196175]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IGI,IMP] [PMID 3303332]; GO_process: GO:0043388 - positive regulation of DNA binding [Evidence IMP] [PMID 7902583]; GO_process: GO…
codon start: 1
product: Pho2p
translation: MSESALVSPSTHSMSSSSGTNTRTRKSTLTQQQKNKKRQRATPAQLVYLKKEFEINNTPNAKTREEIGKKIDMTERSVQIWFQNKRAKQKLFSRKHNISGLGNISPLGPNMVGNRYFSPSSNSSLDNSSYSSPGLGGMAHPKMFVMPYDGMRSFARSASSLEHRQALRGYGNLASLIVFSCRSLTIGSWRRVASPNATNGLTPDDLTVLYSPSESTFTYLMFDGTTRFRMEFPAKSVEKITLSVDENNSMAGVVTLCLNNRPSFSVKTPKSPDRWLVCGDFSVAEQASRCTIHKLVGPYNQLHGQVCQLYSFQPSKVSAGLLTPPQTATSTSSERELEAVSQRSRLVDNLWLNAPERSQTRSTPAVFTCSNNVAVHDVCDSILAFGDSVSENDLTSPAPGGSELADEIKDDIHDALFSEPEVSQISWNTIFGDEESQFAPADDLFEVKIGDNNAAHIDTLFSTQSSLGMISPDSDGAGKMAEVISGQVHNEQTVEPAVITSPTSTAVNGDTVGTNAPIMSSSMNGSGSTDFDDQLLLGAGNNYTLDATSSVIGLNDDFQLSYVVNFL
SIO_010081: AWJ20_2372
subclass of: SO_0000673
so part of: AWJ20_2372
location: 1141365..1143068
location: region:1141365-1143068:1
so has part: feature:1141365-1143068:1:exon

XP_018737242.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1141365-1143068:1:exon

AWJ20_2373
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PTM1
locus tag: AWJ20_2373
so part of: sequence
location: <1143784..>1145673
location: region:1143784-1145673:1
so has part: feature:1143784-1145673:1:exon
subclass of: SO_0000010

30034277
type: Gene
SIO_000068: ncbigene

position:1143784:1
position: 1143784
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1145673:1
position: 1145673
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1143784-1145673:1:exon

AWJ20_2373
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PTM1
locus tag: AWJ20_2373
product: Ptm1p
transcript id: XM_018879314.1
SIO_010081: AWJ20_2373
subclass of: SO_0000673
so part of: AWJ20_2373
location: <1143784..>1145673
location: region:1143784-1145673:1
so has part: feature:1143784-1145673:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1143784-1145673:1:exon

AWJ20_2373
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PTM1
locus tag: AWJ20_2373
note: hypothetical protein; copurifies with late Golgi vesicles containing the v-SNARE Tlg2p; PTM1 has a paralog, YHL017W, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0031901 - early endosome membrane [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]
codon start: 1
product: Ptm1p
translation: MFYRSYSRGQVNVVWLIVLISTVFGSVWADEVKVDNNKDNRQICSGIYSKQDWSGPHDSYIDAAFTSPSDNENDWIAVVIFEYRNVDMLGVSVSGDRNKKYVCDEGAIASGLCKSEQLGTFLIDENLGDGNHTSDLSGEQNIPALFATISTQRVDAKNPKAIHYPIKKSGYYCVTTFPSNPDLKYTGAVVYQNAFGYLAAGQIPKLPFFGGAALAYLVVFALWMFSYIQHRSDILPVQNYITAICGFLVIEMIIIWGYYDLVNSKGTSGGTVAYLVFLSILDALRNAYTFFLLLIVCLGYGVVKPSLGSVMWKCQALGVAHFVFAVIYTVSSYLLPTEAVDNPLVLLVILPLTLTMTVFYVWILSSLTGTIKYLESHKQHVKANMYKNLWRILLGSIIVIFAFFFINSLILAGESTLDFITKHWESRWFILDGWLNVVYFVNFCLVAFIWRPTANNRRFAMSSQLAQNEEEAQEFEIGSLRESIDDEEQQRTRDVSPREGGTTIRDFAPPSDNQPDDDRPAAAKYFDRSSSTIKKDTLAANDGETMFDVGGDDDEDDDAAATAATLNSGAGVVGSSSASTTNHDRKFDDDYDQWNDDDEDLHGDLLSDDEDEDDDDDDEQRALTSNKNK
SIO_010081: AWJ20_2373
subclass of: SO_0000673
so part of: AWJ20_2373
location: 1143784..1145673
location: region:1143784-1145673:1
so has part: feature:1143784-1145673:1:exon