Sugiyamaella lignohabitans strain CBS 10342 chromosome D, complete sequence.
type: Entry
definition: Sugiyamaella lignohabitans strain CBS 10342 chromosome D, complete sequence.
sequence version: NC_031673.1
sequence date: 2016-10-25
sequence: sequence
division: CON
label: NC_031673.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA342695
dblink: SAMN04417247
keyword: RefSeq
source: Sugiyamaella lignohabitans
organism: Sugiyamaella lignohabitans
taxonomy: Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Trichomonascaceae; Sugiyamaella.
reference: 1
reference: 2
reference: 3
comment: PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CP014502.\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000340
sequence length: 2277569
topology: linear
so has quality: SO_0000987
location: 1..2277569
location: region:1-2277569:1
RO_0002162: 796027

NC_031673
type: RefSeq
SIO_000068: refseq

PRJNA342695
type: BioProject
SIO_000068: bioproject

SAMN04417247
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence and transcriptome regulation of the pentose utilising yeast Sugiyamaella lignohabitans
author: Bellasio, M.
author: Peymann, A.
author: Valli, M.
author: Sipitzky, M.
author: Graf, A.
author: Sauer, M.
author: Marx, H.
author: Mattanovich, D.
journal: Unpublished

2
title: Direct Submission
journal: Submitted (25-OCT-2016) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Peymann, A.
author: Graf, A.
journal: Submitted (18-FEB-2016) Department of Biotechnology, University of Natural Resources and Life Sciences, Muthgasse 18, Vienna, Vienna 1190, Austria

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2277569:1
position: 2277569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-2277569:1:source
so part of: sequence
organism: Sugiyamaella lignohabitans
mol type: genomic DNA
strain: CBS 10342
chromosome: D

796027
type: Taxonomy
SIO_000068: taxonomy

AWJ20_4604
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4604
so part of: sequence
location: <2427..>2521
location: region:2427-2521:1
so has part: feature:2427-2521:1:exon
subclass of: SO_0000663

30036755
type: Gene
SIO_000068: ncbigene

position:2427:1
position: 2427
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:2521:1
position: 2521
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2427-2521:1:exon

AWJ20_4604
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_4604
product: tRNA-Lys
SIO_010081: AWJ20_4604
subclass of: SO_0000673
so part of: AWJ20_4604
location: <2427..>2521
location: region:2427-2521:1
so has part: feature:2427-2521:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2427-2521:1:exon

AWJ20_4605
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4605
so part of: sequence
location: complement(<9063..>9809)
location: region:9063-9809:-1
so has part: feature:9063-9809:-1:exon
subclass of: SO_0000010

30036756
type: Gene
SIO_000068: ncbigene

position:9063:-1
position: 9063
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:9809:-1
position: 9809
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9063-9809:-1:exon

AWJ20_4605
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4605
product: hypothetical protein
transcript id: XM_018881687.1
SIO_010081: AWJ20_4605
subclass of: SO_0000673
so part of: AWJ20_4605
location: complement(<9063..>9809)
location: region:9063-9809:-1
so has part: feature:9063-9809:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9063-9809:-1:exon

AWJ20_4605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4605
codon start: 1
product: hypothetical protein
translation: MSFYQAKAILDRFGLSHGDTKNVKSKDQASDASKEQKGKKRHPQKQSGQSQPENQEDSYQGQEDSVPGVTANKFERTAQPGLEAQGQRLPSTFIPTRPPYTPYEPKWYDRILDLLVGEDEQSPNSRYALICQNCRMHNGLCQFGEKPQFVVYYCPHCGMQNGEEEHPEDDPKESKEAGRQNVKADEGRSEQESTKKVDAEIDIKNGYREYREGNGSEDEANYPNEPVNIKRKTSQKSVRQRKSRSQKE
SIO_010081: AWJ20_4605
subclass of: SO_0000673
so part of: AWJ20_4605
location: complement(9063..9809)
location: region:9063-9809:-1
so has part: feature:9063-9809:-1:exon

XP_018736140.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9063-9809:-1:exon

AWJ20_4606
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: POL92
locus tag: AWJ20_4606
so part of: sequence
location: complement(<10902..>14051)
location: region:10902-14051:-1
so has part: feature:10902-14051:-1:exon
subclass of: SO_0000010

30036757
type: Gene
SIO_000068: ncbigene

position:10902:-1
position: 10902
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:14051:-1
position: 14051
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10902-14051:-1:exon

AWJ20_4606
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: POL92
locus tag: AWJ20_4606
product: polyprotein of L1-like non-LTR retrotransposon Zorro 3
transcript id: XM_018881688.1
SIO_010081: AWJ20_4606
subclass of: SO_0000673
so part of: AWJ20_4606
location: complement(<10902..>14051)
location: region:10902-14051:-1
so has part: feature:10902-14051:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10902-14051:-1:exon

AWJ20_4606
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: POL92
locus tag: AWJ20_4606
note: allele of CaO19.8194
codon start: 1
product: polyprotein of L1-like non-LTR retrotransposon Zorro 3
translation: MSELDIILVQEPGLNKGGTVIQHSSWVAVHSGEGKQRTNAITYISAKLRGRLPVIMDRGLTNENMVSITLGNLTITNIYNRQSEELHPLKQWCHRVEGDDSGNLRVIAGDFNLHHPLWQTNALASRDSKMWVDWASDHDLMLASRADEATHMAGNTIDLVFTDSRINTTMRESLDVGSDHFMLKWNLHTELVQAELVCTPTQGFNYKKADWEVFAEEVNRLSKQMDVPSSLTTSKTTENCLKSADKFAERIVAILQEALKISTPKLNITFRSKRWWTPELKQLKLRVQRLRRRAKRYPTEAHIKERQEANARYKRELMIAKAKNWNGFLSQVTTQNVWLALKLVKPTENQVSLLPALRIDDDKHTQTYGEQISELFNSLFPSVPPSTKGVKPVEASANWPKLRKKEVQSALQDQASYKAPGPDGVKTKAIKEAWKQKSFRKLVKGLFSYCLRVGYHPKIFRKGLTVVLPKPKRDPTLARSYRPITLLSTLGKVLEKIFQRRLTALTATCIPRQQFGGRHGFSAVDALTKLSEDIQYNLSRSKVTSILAIDIKGAFDNVHRDSLLSTMEQMNLPVPVQNWVYHFMCGRRTSLMVDGKVTRERKINTGIPQGSPISPLLFLIYSSPLYSIVQENGGKVIGFVDDITIYVTGKSRDENTKRLSNILQKCHEWATSAHTAIDYGEKLGFMHVDNQRTSKKRQLRLVLPSGERRQASPTLKLLGVTLDSQWKFSKHVDAIAIKGKMVLGIIRRLGGITWGVTGASMRNLYQGCVRPILEYASPVWYPKITKQEREQLQRIQNTGLRAILGGYHQTPIDCLHRDTDIMPLEQRYDTLQDNYIVRLHRNVDPENPVNAESTWWRKHMEHNELVQRLYEVLPKEEIFQDRIRRRKPPWKKEDMECESKAWKVKSELKKKIYQRHHTIWETQYRTSAKGEFYRSYTLPRLYNADHKNPLRYFLNECSKNELSKLVQLRTAKGAFGMFFKRFKINNRPHQCECGEEEDVKHLLCECPVTENHRQILRDASATLDLKVLLDSKKGLKAVLAFLAKAPQLL
SIO_010081: AWJ20_4606
subclass of: SO_0000673
so part of: AWJ20_4606
location: complement(10902..14051)
location: region:10902-14051:-1
so has part: feature:10902-14051:-1:exon

XP_018736141.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10902-14051:-1:exon

AWJ20_4607
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4607
so part of: sequence
location: <16060..>16131
location: region:16060-16131:1
so has part: feature:16060-16131:1:exon
subclass of: SO_0000663

30036758
type: Gene
SIO_000068: ncbigene

position:16060:1
position: 16060
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:16131:1
position: 16131
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16060-16131:1:exon

AWJ20_4607
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_4607
product: tRNA-Gln
SIO_010081: AWJ20_4607
subclass of: SO_0000673
so part of: AWJ20_4607
location: <16060..>16131
location: region:16060-16131:1
so has part: feature:16060-16131:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16060-16131:1:exon

AWJ20_4608
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: STR2
locus tag: AWJ20_4608
so part of: sequence
location: <16659..>18428
location: region:16659-18428:1
so has part: feature:16659-18428:1:exon
subclass of: SO_0000010

30036759
type: Gene
SIO_000068: ncbigene

position:16659:1
position: 16659
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:18428:1
position: 18428
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16659-18428:1:exon

AWJ20_4608
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: STR2
locus tag: AWJ20_4608
product: Str2p
transcript id: XM_018881689.1
SIO_010081: AWJ20_4608
subclass of: SO_0000673
so part of: AWJ20_4608
location: <16659..>18428
location: region:16659-18428:1
so has part: feature:16659-18428:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16659-18428:1:exon

AWJ20_4608
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: STR2
locus tag: AWJ20_4608
inference: similar to AA sequence:KEGG_Orthology:K01739
note: Cystathionine gamma-synthase, converts cysteine into cystathionine; STR2 has a paralog, YML082W, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0003962 - cystathionine gamma-synthase activity [Evidence IEA]; GO_function: GO:0003962 - cystathionine gamma-synthase activity [Evidence IMP] [PMID 10821189]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0006790 - sulfur compound metabolic process [Evidence IMP] [PMID 10821189]; GO_process: GO:0019346 - transsulfuration [Evidence IMP] [PMID 10821189]
codon start: 1
product: Str2p
translation: MPSIDSPPTAVGCPIPSNTPHAVSVTLPSWAANVAYEEGENWVASKMSSGYPRFFVHHRIQALSDEIESSYGREGEKSLIFPSYATACRCRDFIKRYSTLQPCPVRIVQLSTPKPSEGQDDGSSIQAHIAVVFFPQSEYSVARKYWQHTGEGVSSRLGEYFLEHWGDNNPHNGGGNGANTSSGKGSYKDFHRRSSQSPVLEGLSENSNSNADSNKEQSTFVEERFGRNLDLSFAPAAKLALRRRIAGKITESGTSASRHGNFEELSEDDVYLYATGMTSIYSAHRAVLEALGDGKKKSVCFGFPYTDTLKILEKWGPGVHFYGNGEQPDLAALEKLLEDGEQIVALFCEFPSNPLLKSPDLVNIRRLADKYNFAVVVDETVGNFVNIHVLPYSDIVVSSLTKVFSGESNVMGGSLVLNPRGKHFKALKDTLGRQYEDNFWAEDAIYLERNSRDFAKRNEKININTEAVTELLRQSPIIKDLFYPKYVSTKEYYDTCRVDGGGYGGLFSIVFHNPQHAKNFFDRMVMAKGPSLGTNFTLSCPYTIIAHYLELDFVEKFGVDRHLVRISVGLEETEELLERFRKGLEACVE
SIO_010081: AWJ20_4608
subclass of: SO_0000673
so part of: AWJ20_4608
location: 16659..18428
location: region:16659-18428:1
so has part: feature:16659-18428:1:exon

XP_018736142.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16659-18428:1:exon

AWJ20_4609
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4609
so part of: sequence
location: complement(<20297..>20980)
location: region:20297-20980:-1
so has part: feature:20297-20980:-1:exon
subclass of: SO_0000010

30036760
type: Gene
SIO_000068: ncbigene

position:20297:-1
position: 20297
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:20980:-1
position: 20980
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20297-20980:-1:exon

AWJ20_4609
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4609
product: hypothetical protein
transcript id: XM_018881690.1
SIO_010081: AWJ20_4609
subclass of: SO_0000673
so part of: AWJ20_4609
location: complement(<20297..>20980)
location: region:20297-20980:-1
so has part: feature:20297-20980:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:20297-20980:-1:exon

AWJ20_4609
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4609
codon start: 1
product: hypothetical protein
translation: MPEEFVPAWKKLGLKVKQTDPLAVGIVGTEQNENVKRKRKEPKQETDANAEKGPKKPPKRVKLPKNERPPPPEADQLAYLRQYHEDKENWKFSKQKQNWILKNLYTIEESYAEALDSYVDGLVGGARDRVVEEARKVISEWNEFMTKEDEEEKEKEESTSKEVAEKEEKIEESNAESSKSETSENSKPKSKTQEPPQPVAPSESKAIKARHFLELLVGEKPKLEFID
SIO_010081: AWJ20_4609
subclass of: SO_0000673
so part of: AWJ20_4609
location: complement(20297..20980)
location: region:20297-20980:-1
so has part: feature:20297-20980:-1:exon

XP_018736143.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20297-20980:-1:exon

AWJ20_4610
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: DAL2
locus tag: AWJ20_4610
so part of: sequence
location: <22086..>23129
location: region:22086-23129:1
so has part: feature:22086-23129:1:exon
subclass of: SO_0000010

30036762
type: Gene
SIO_000068: ncbigene

position:22086:1
position: 22086
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:23129:1
position: 23129
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22086-23129:1:exon

AWJ20_4610
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: DAL2
locus tag: AWJ20_4610
product: allantoicase
transcript id: XM_018881692.1
SIO_010081: AWJ20_4610
subclass of: SO_0000673
so part of: AWJ20_4610
location: <22086..>23129
location: region:22086-23129:1
so has part: feature:22086-23129:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:22086-23129:1:exon

AWJ20_4610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: DAL2
locus tag: AWJ20_4610
inference: similar to AA sequence:KEGG_Orthology:K01477
note: Allantoicase; converts allantoate to urea and ureidoglycolate in the second step of allantoin degradation; expression sensitive to nitrogen catabolite repression and induced by allophanate, an intermediate in allantoin degradation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004037 - allantoicase activity [Evidence IEA,IEA]; GO_function: GO:0004037 - allantoicase activity [Evidence ISS] [PMID 1916277]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0000256 - allantoin catabolic process [Evidence IEA,IEA]; GO_process: GO:0000256 - allantoin catabolic process [Evidence IMP] [PMID 1916277]; GO_process: GO:0006144 - purine nucleobase metabolic process [Evidence IEA]
codon start: 1
product: allantoicase
translation: MSVSQVSLEEFEKRTAAYVNVINTHLETEIIAFSDEFFAEATNLITSTPPVREAGRYTEKGAWYDGWETRRHNTEEADWVIIKVGVNSARIAAVEVDTAFFNGNHAPAISVEGVYLEGKVNQSSFDTVQWQPIISHVECGPSQRHFFARDDGLTKQSFNYLRLRMYPDGGIARFRAYGSPVPVFPDDKSVVLDLASISNGGSAVAWSDKRFSGPDNLLLPGRGHDMSDGWETARSRTKGHVDWAIIKLGAPARISKVVVDTAYFLGNFPAAVKVEAINLDPSSEISATDSAWKDIVGETPAGPGKEHEFSLANGLATITKDELFTHVKLVMIPDGGVKRLRIFGTRV
SIO_010081: AWJ20_4610
subclass of: SO_0000673
so part of: AWJ20_4610
location: 22086..23129
location: region:22086-23129:1
so has part: feature:22086-23129:1:exon

XP_018736144.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22086-23129:1:exon

AWJ20_4611
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MNS1
locus tag: AWJ20_4611
so part of: sequence
location: complement(<25250..>27241)
location: region:25250-27241:-1
so has part: feature:25250-27241:-1:exon
subclass of: SO_0000010

30036763
type: Gene
SIO_000068: ncbigene

position:25250:-1
position: 25250
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:27241:-1
position: 27241
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25250-27241:-1:exon

AWJ20_4611
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MNS1
locus tag: AWJ20_4611
product: mannosyl-oligosaccharide 1,2-alpha-mannosidase
transcript id: XM_018881693.1
SIO_010081: AWJ20_4611
subclass of: SO_0000673
so part of: AWJ20_4611
location: complement(<25250..>27241)
location: region:25250-27241:-1
so has part: feature:25250-27241:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:25250-27241:-1:exon

AWJ20_4611
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MNS1
locus tag: AWJ20_4611
inference: similar to AA sequence:KEGG_Orthology:K01230
note: Alpha-1,2-mannosidase; involved in ER-associated protein degradation (ERAD); catalyzes the removal of one mannose residue from a glycosylated protein, converting the modification from Man9GlcNAc to Man8GlcNAc; catalyzes the last step in glycoprotein maturation in the ER and is critical for ER protein degradation; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 8864657]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004571 - mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [Evidence IEA,IEA]; GO_function: GO:0004571 - mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [Evidence IDA] [PMID 12090241]; GO_function: GO:0004571 - mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [Evidence IMP] [PMID 1714453]; GO_function: GO:0004571 - mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [Evidence IMP] [PMID 8439291]; GO_function: GO:0004571 - mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [Evidence IDA] [PMID 8910350]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 8905927]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0035977 - protein deglycosylation involved in glycoprotein catabolic process [Evidence IMP] [PMID 9732283]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]
codon start: 1
product: mannosyl-oligosaccharide 1,2-alpha-mannosidase
translation: MTSSSSEDENIFEDCEKTEPGLASTSSSASPNITSAMWRPNTERRPLPMYKDKPEKTTRRESPSVRKIRKTVGFIVFFTGILYLVYNIGKATAPLPGRGRTYKDILSWGSKPKEPETWPEKQQAVKNAFIDSWNGYKKYAWGKDVYRPVSKTGVNMGPKPLGWIIVDSLDTLHIMGLKDQLKEARTWVHKDLDYNMDYEVNTFETTIRMLGGMLSAHYLTKDDMYLDKAADLGNRLLGAFDSISGIPYSSVNLHSSKGKKSHTDLGAASTAEAATLQLEFKYLAKLTGESLYWEKVEKILSIMDANKVRSGLVPIYIQPDTGQFSSRVIRLGSRGDSYYEYLIKQYLQTNEEEPIYKEMYDESVQGIKDHLIKQSTPNKLTFIGELNTGVGGKLSTKMDHLVCFAGGMLAIGATNGLPLDDARRKGFWSTVREADIQLAMELTHTCYEMYSQTQTGLAPEIVYFNTDKDSTSDFTIKRNDGHNLQRPETVESLFILWRLTKNPIYREWGWNIFKSFEHWTKLQGDAGYASINDVRNTPPAFRNNMESFWLSETLKYLYLLFDDSDELLPLTDVVFNTEAHPFPKFSMDPLFKTGWSRSKKATAPTPGNAAADEPLQKPIDQTDKKPKPISKDDRKEASNAEARAEDIPVRQVGAADTAPSISE
SIO_010081: AWJ20_4611
subclass of: SO_0000673
so part of: AWJ20_4611
location: complement(25250..27241)
location: region:25250-27241:-1
so has part: feature:25250-27241:-1:exon

XP_018736145.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25250-27241:-1:exon

AWJ20_4612
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4612
so part of: sequence
location: complement(<28542..>29183)
location: region:28542-29183:-1
so has part: feature:28542-29183:-1:exon
subclass of: SO_0000010

30036764
type: Gene
SIO_000068: ncbigene

position:28542:-1
position: 28542
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:29183:-1
position: 29183
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28542-29183:-1:exon

AWJ20_4612
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4612
product: peptidase family M20 protein
transcript id: XM_018881694.1
SIO_010081: AWJ20_4612
subclass of: SO_0000673
so part of: AWJ20_4612
location: complement(<28542..>29183)
location: region:28542-29183:-1
so has part: feature:28542-29183:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:28542-29183:-1:exon

AWJ20_4612
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4612
inference: similar to AA sequence:KEGG_Orthology:K01438
codon start: 1
product: peptidase family M20 protein
translation: MMFNSITYAVALASVFSNVVAEKQSTFSASTLKVNQELLDLHRDLIQLKSVSGYEIDAAVYLQNYLESNNFTVELETVYGDSNRKNVYAYYGKERNTKALLTSHIDTVPPYFNYSVVDNRIYGRGSVDAKSCVSSQIVALSQLFKDGEVEEGDVALLFVVDEEVQGRGMVYASDNLGVDSWEHVIFGEPTENRLGVGHKGMASAQLKAHGKAA
SIO_010081: AWJ20_4612
subclass of: SO_0000673
so part of: AWJ20_4612
location: complement(28542..29183)
location: region:28542-29183:-1
so has part: feature:28542-29183:-1:exon

XP_018736146.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28542-29183:-1:exon

AWJ20_4613
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4613
so part of: sequence
location: <30080..>30913
location: region:30080-30913:1
so has part: feature:30080-30913:1:exon
subclass of: SO_0000010

30036765
type: Gene
SIO_000068: ncbigene

position:30080:1
position: 30080
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:30913:1
position: 30913
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30080-30913:1:exon

AWJ20_4613
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4613
product: hypothetical protein
transcript id: XM_018881695.1
SIO_010081: AWJ20_4613
subclass of: SO_0000673
so part of: AWJ20_4613
location: <30080..>30913
location: region:30080-30913:1
so has part: feature:30080-30913:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:30080-30913:1:exon

AWJ20_4613
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4613
codon start: 1
product: hypothetical protein
translation: MPLELSAIDVLVTDWDETVTSEDTMAVLSQAAYDHKTNFHPPWEYFGDMYYKDYEKYACNYNERRGSLQEEAEFLSGLKQVELESVTRVENSGLFKDVPESMVRSQASKVKIRQGWWDVLSLATKNKVPIVILSVNWSDVLIEEVLSLHGFDTTNSSIRIYANKIQVDDETGLATGKLGGHPILGSAGIRTAQDKLDILKKIRSQKLSGKATESIAYFGDSSTDTLALLEADLGVVIHKNSLASRLEGLGVAILRKEHDKTDNNQVYYLCEWSDLLT
SIO_010081: AWJ20_4613
subclass of: SO_0000673
so part of: AWJ20_4613
location: 30080..30913
location: region:30080-30913:1
so has part: feature:30080-30913:1:exon

XP_018736147.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30080-30913:1:exon

AWJ20_4614
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: POL4
locus tag: AWJ20_4614
so part of: sequence
location: <32007..>33749
location: region:32007-33749:1
so has part: feature:32007-33749:1:exon
subclass of: SO_0000010

30036766
type: Gene
SIO_000068: ncbigene

position:32007:1
position: 32007
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:33749:1
position: 33749
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32007-33749:1:exon

AWJ20_4614
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: POL4
locus tag: AWJ20_4614
product: Pol4p
transcript id: XM_018881696.1
SIO_010081: AWJ20_4614
subclass of: SO_0000673
so part of: AWJ20_4614
location: <32007..>33749
location: region:32007-33749:1
so has part: feature:32007-33749:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:32007-33749:1:exon

AWJ20_4614
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: POL4
locus tag: AWJ20_4614
inference: similar to AA sequence:KEGG_Orthology:K10981
note: DNA polymerase IV; undergoes pair-wise interactions with Dnl4p-Lif1p and Rad27p to mediate repair of DNA double-strand breaks by non-homologous end joining (NHEJ); homologous to mammalian DNA polymerase beta; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence TAS] [PMID 9745046]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence TAS] [PMID 9745046]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IEA,IEA,IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006302 - double-strand break repair [Evidence IDA] [PMID 12235149]; GO_process: GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IDA,IMP] [PMID 10438542]; GO_process: GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IDA] [PMID 15342630]
codon start: 1
product: Pol4p
translation: MVPSRPSSKLYQIKSKKYDEYGARVTSSFDKSVSHVLIDPEWDGSRTLKYLHISAGDIRPEIDKGTIHFVRDSWPSACIENKQLIPESPDYTVQLYSPAPSPETTPEPEVSQKLVQTVISPEKPPKLKKRDISTSSNTSLSPEPDTPKQTAIDDLNPVEASGANTSIENKAEKKAQDGSGNDELDSVIQEAELQEHAARFLSDDEIEHALQTQRKKYSAPYSRPKRTSDGRVLKGNWDTFLCMKAGEDNIAKPDGPNALVINILSLMLHHYEAEGDQWRTLAYRKAIATLKKQTVPVRTAAQAVKLPGIGSRLADKIEEINKTGDLKRLKYTQGEGKFEVLELLKRIYGVGNKTANKWYSEGIRTLDDVRERKDLTANQQTSLDHYEDFAERIPRDNVTKHFERVRDAVHEIDPEIEATAMGSYRRLQPDCGDIDIILTKRNASRHDLTVTLAKLLDVLFEQGFAKYTFGGIEANSMRWLGASAHPDDGNKWRRMDILLVPWEERGAAFIYYTGNDIFNRSMRLLAQKKGYRLNEKGLFLAPHDRKSAGAVGPLVCGEDEEKIFETLGVPNRPPHKRIIG
SIO_010081: AWJ20_4614
subclass of: SO_0000673
so part of: AWJ20_4614
location: 32007..33749
location: region:32007-33749:1
so has part: feature:32007-33749:1:exon

XP_018736148.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32007-33749:1:exon

AWJ20_4615
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SCS2
locus tag: AWJ20_4615
so part of: sequence
location: <37366..>38799
location: region:37366-38799:1
so has part: feature:37366-38799:1:exon
subclass of: SO_0000010

30036767
type: Gene
SIO_000068: ncbigene

position:37366:1
position: 37366
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:38799:1
position: 38799
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37366-38799:1:exon

AWJ20_4615
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SCS2
locus tag: AWJ20_4615
product: phosphatidylinositol-binding protein SCS2
transcript id: XM_018881697.1
SIO_010081: AWJ20_4615
subclass of: SO_0000673
so part of: AWJ20_4615
location: join(<37366..37399,37772..>38799)
location: region:37366-38799:1
so has part: feature:37366-37399:1:exon
so has part: feature:37772-38799:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:37366-37399:1:exon

position:37399:1
position: 37399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:37772-38799:1:exon

position:37772:1
position: 37772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

AWJ20_4615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SCS2
locus tag: AWJ20_4615
codon start: 1
product: phosphatidylinositol-binding protein SCS2
translation: MDISPEVLVFHAPFSEQATKPLVLKNTSDRKLAYKIKTTAPKLYCVRPNASVIEAGQTIEVSIIRQAKDQPKPTEKSKDKFLVLTAPVSDEILENSDISKLWATLEETSKDTIVNKKIKVNYEFGTDSTGSSGSHHGETGAATSGSVGSGSLSSAATGTSESGDSSRSSGLPVNSHASALAAATSQSEGAGNTSIIDPSQYGTPLRGGHSDNAGAGSVLGGGSSGDGAGSSPVNATAAGIVAAAAGGAATGSSLSNGSSGESTLKSRNIPSSADTDRASQRAQEQISSQSKELKAAAAANSSSSTSGSANEPGFKSSQPGSSTAVRQQPSSGVPLHLVLALALVAFFIGWKLF
SIO_010081: AWJ20_4615
subclass of: SO_0000673
so part of: AWJ20_4615
location: join(37366..37399,37772..38799)
location: region:37366-38799:1
so has part: feature:37366-37399:1:exon
so has part: feature:37772-38799:1:exon

XP_018736149.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:37366-37399:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:37772-38799:1:exon

AWJ20_4616
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MAP2
locus tag: AWJ20_4616
so part of: sequence
location: complement(<39107..>40453)
location: region:39107-40453:-1
so has part: feature:39107-40453:-1:exon
subclass of: SO_0000010

30036768
type: Gene
SIO_000068: ncbigene

position:39107:-1
position: 39107
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:40453:-1
position: 40453
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39107-40453:-1:exon

AWJ20_4616
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MAP2
locus tag: AWJ20_4616
product: Map2p
transcript id: XM_018881698.1
SIO_010081: AWJ20_4616
subclass of: SO_0000673
so part of: AWJ20_4616
location: complement(<39107..>40453)
location: region:39107-40453:-1
so has part: feature:39107-40453:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:39107-40453:-1:exon

AWJ20_4616
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MAP2
locus tag: AWJ20_4616
inference: similar to AA sequence:KEGG_Orthology:K01265
note: Methionine aminopeptidase; catalyzes the cotranslational removal of N-terminal methionine from nascent polypeptides; function is partially redundant with that of Map1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0070006 - metalloaminopeptidase activity [Evidence IEA]; GO_function: GO:0070006 - metalloaminopeptidase activity [Evidence IGI,ISA] [PMID 8618900]; GO_function: GO:0008235 - metalloexopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0070084 - protein initiator methionine removal [Evidence IEA]; GO_process: GO:0035551 - protein initiator methionine removal involved in protein maturation [Evidence IMP] [PMID 11811952]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]
codon start: 1
product: Map2p
translation: MGSTEIANGSEKLADKVEDLKIEESTKNVPKSEQAGDEDDDDEGDDEVAAEGGEEGAAKKKKKKKKNNKKKKKTAGGSGAVPTSQTEPPTVGLSNLFKDNVYPEGEIVEYKDDNHYRTTSEEKRYLERASFDAFNDLRKAAEAHRQVRQYAQKTIKPGMTMIEIADLIENATRALTEGNGDSKKAGPGFPTGLSLNHVAAHYTPNKGDTTVLKYEDVMKVDIGVHVNGRILDSAFTLTFDDKYDNLLAAVRDATNTGVREAGIDVRLGDIGAAIQEVMESYEVELDGKTFQVKPIRNLNGHNINPFEIHGGKSVPIVKSHDQTKMEEGETFAIETFGSTGKGYVHDEGEVSHYAKRTNIGHVPLRLNSAKNLLAVIDKHFGTLPFCRRYLDHAGEEKYLLALNNLVKSGIVQDYPPLVDIPGSYTAQYEHTILLRPTVKEVVSRGDDY
SIO_010081: AWJ20_4616
subclass of: SO_0000673
so part of: AWJ20_4616
location: complement(39107..40453)
location: region:39107-40453:-1
so has part: feature:39107-40453:-1:exon

XP_018736150.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:39107-40453:-1:exon

AWJ20_4617
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MAL31
locus tag: AWJ20_4617
so part of: sequence
location: complement(<41803..>43146)
location: region:41803-43146:-1
so has part: feature:41803-43146:-1:exon
subclass of: SO_0000010

30036769
type: Gene
SIO_000068: ncbigene

position:41803:-1
position: 41803
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:43146:-1
position: 43146
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41803-43146:-1:exon

AWJ20_4617
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MAL31
locus tag: AWJ20_4617
product: Mal31p
transcript id: XM_018881699.1
SIO_010081: AWJ20_4617
subclass of: SO_0000673
so part of: AWJ20_4617
location: complement(<41803..>43146)
location: region:41803-43146:-1
so has part: feature:41803-43146:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:41803-43146:-1:exon

AWJ20_4617
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MAL31
locus tag: AWJ20_4617
note: Maltose permease; high-affinity maltose transporter (alpha-glucoside transporter); encoded in the MAL3 complex locus; member of the 12 transmembrane domain superfamily of sugar transporters; functional in genomic reference strain S288C; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0005352 - alpha-glucoside:proton symporter activity [Evidence ISS] [PMID 18179544]; GO_function: GO:0022891 - substrate-specific transmembrane transporter activity [Evidence IEA]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0000017 - alpha-glucoside transport [Evidence ISS] [PMID 18179544]; GO_process: GO:0008643 - carbohydrate transport [Evidence IEA]; GO_process: GO:0000023 - maltose metabolic process [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]
codon start: 1
product: Mal31p
translation: MSPDTEKTHHVVDEQDVGSISSIKAVNVILENTKELLEEERQLGVIDAMKQYPKAMFWSVFFSVAVIMTGYDAQLVTSFYAMPSFIAKYGQYYNGNKEISAAWQSGLGMGNPIGQLLGSLVVAWPSEKWGRKRVLIVCNLLIAALIFMQFFANNIQVLCVGEILAGLLWGCFVVIAPSYASEVSPLALRGILTAFINMAFVIGQFVAQGVAAGLESRTDKWAYKAPFAIQWIWCLILFVGLPFAPESPWYLVRKGRRDEAKKALQRLAWDKAGDGVSLEKTLNVIEQTDLLERELHTSSTYMDCFKGSNLRRTEICCMVYLIQVICGNPLMGYCNYFFIQAGLDNQKAFYMGVGTTAIGFVGTALTWVVLSYAGRRTIFNYGLSVMTLLLFIIAILDCAPSYSSNLGFSWAQASLLDVWTFLYQLTVGPLTFVIIGEISSTKLVSIL
SIO_010081: AWJ20_4617
subclass of: SO_0000673
so part of: AWJ20_4617
location: complement(41803..43146)
location: region:41803-43146:-1
so has part: feature:41803-43146:-1:exon

XP_018736151.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:41803-43146:-1:exon

AWJ20_4618
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: DES1
locus tag: AWJ20_4618
so part of: sequence
location: <44455..>45597
location: region:44455-45597:1
so has part: feature:44455-45597:1:exon
subclass of: SO_0000010

30036770
type: Gene
SIO_000068: ncbigene

position:44455:1
position: 44455
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:45597:1
position: 45597
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44455-45597:1:exon

AWJ20_4618
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: DES1
locus tag: AWJ20_4618
product: sphingolipid delta-4 desaturase
transcript id: XM_018881700.1
SIO_010081: AWJ20_4618
subclass of: SO_0000673
so part of: AWJ20_4618
location: <44455..>45597
location: region:44455-45597:1
so has part: feature:44455-45597:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:44455-45597:1:exon

AWJ20_4618
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: DES1
locus tag: AWJ20_4618
inference: similar to AA sequence:KEGG_Orthology:K04712
codon start: 1
product: sphingolipid delta-4 desaturase
translation: MTMSEVKVQASGTAGHSSDGGLSNKSRVKETSEDVENIKIRRENEFLFTYQEEPHRSRRMEIIKAHPEVTKLVGHEPLTKWIVVGVVALQFSTAWFMRGASFSSWYFWAAAYFIGATCNSNIFLAIHELSHNLAFKKPLHNKLFAIFANIPIGIPYSAGFGPYHQLHHKHMGEPDYDTDLPTSLEAMFLSSVAGKAFFATFQLLFYAIRPMCVIKVNMTWVHYLNIAVQLAVDALFIKLVCHDSSGSLDLMPFYYLLLSAFLAGSLHPIAGHFIAEHYVLDAPKEYDLKKTALPETYSYYGWLNVFVYNAGYHNEHHDFPYIPWSRIKTLHTIASEFYDPLPSYTSWIYVIYRFVFDENVSLWCRVKRSNIKANKGDDQP
SIO_010081: AWJ20_4618
subclass of: SO_0000673
so part of: AWJ20_4618
location: 44455..45597
location: region:44455-45597:1
so has part: feature:44455-45597:1:exon

XP_018736152.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:44455-45597:1:exon

AWJ20_4619
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4619
so part of: sequence
location: <48199..>49290
location: region:48199-49290:1
so has part: feature:48199-49290:1:exon
subclass of: SO_0000010

30036771
type: Gene
SIO_000068: ncbigene

position:48199:1
position: 48199
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:49290:1
position: 49290
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:48199-49290:1:exon

AWJ20_4619
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4619
product: cyclin Pch1
transcript id: XM_018881701.1
SIO_010081: AWJ20_4619
subclass of: SO_0000673
so part of: AWJ20_4619
location: <48199..>49290
location: region:48199-49290:1
so has part: feature:48199-49290:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:48199-49290:1:exon

AWJ20_4619
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4619
codon start: 1
product: cyclin Pch1
translation: MSSSISSDSNATTGSPVSSNGSSTTLVNDSSSANTTSNSTHDTKDVDALDSSKKPERTTKERVDSGKPNHKPETLVPGQNVWIFSMAQVAKSPSAKDGIPTKHEFIQRAKGVNFIIVTGTQLRLPPMTIYAAALFLHRFYLRHSLKKFHIYEVGAACLFLATKVEESNRRLKDVAIACTRVASKDMNKVVDEQSKDYWKWRDTIIYNEELALEALCFDLTLKSPYEICTELMIKHEMELVEPVRKAGQHFIHDSCKTVLGLIYSAEVIAAAAFYWAVRSTGTKIDLKPKNGEENKLLGVKKQHVYDAVNMMADFYSTLQETVLSSERKNKYTRMTPSNKRKASDSSSSTSKKNKPDEAQTVPV
SIO_010081: AWJ20_4619
subclass of: SO_0000673
so part of: AWJ20_4619
location: 48199..49290
location: region:48199-49290:1
so has part: feature:48199-49290:1:exon

XP_018736153.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:48199-49290:1:exon

AWJ20_4620
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RAD9
locus tag: AWJ20_4620
so part of: sequence
location: <50474..>53815
location: region:50474-53815:1
so has part: feature:50474-53815:1:exon
subclass of: SO_0000010

30036773
type: Gene
SIO_000068: ncbigene

position:50474:1
position: 50474
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:53815:1
position: 53815
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50474-53815:1:exon

AWJ20_4620
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RAD9
locus tag: AWJ20_4620
product: chromatin-binding protein RAD9
transcript id: XM_018881703.1
SIO_010081: AWJ20_4620
subclass of: SO_0000673
so part of: AWJ20_4620
location: <50474..>53815
location: region:50474-53815:1
so has part: feature:50474-53815:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:50474-53815:1:exon

AWJ20_4620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RAD9
locus tag: AWJ20_4620
inference: similar to AA sequence:KEGG_Orthology:K06661
codon start: 1
product: chromatin-binding protein RAD9
translation: MSISGGSWFTDDLEIERDHDDKTQPVGGRGDIDQQTQIVNNQIPNVLLGPFPSFGIGETKPRDSDSTHSNLSNSSKSSARTQKDEPIDLPSGETDVVSDPDPVAVQPGPESNVTQKLSSMGPSSDEPVGSPSPIALKEGIDGVSRYRRYSGPVSPIRGEAANAIARFNSSPGGFESDHEETMNDRDIGGNFVATGLGASQATQLIDTANYESSPLFKGHKSSQGVVLNFEELASSPLKVRNASVTSTQNDVNVVNNGVGNGIGNFGAIGEGSKQSNASSAEDDSIHIHTAFFAAEDSQLQKRRKAINKLKNQEDTAIQIDDEDVVHLNIDKAKSTRDSQDKPGTVKADKPDILSLDVDPSPSHISDSIQGSQGASSATQIITGVKYSQITRNTATANSQFQETQRVRLPNAIPNALLISRDQWMSTVDDSDNNDSQERGFTHPASLNTQGSGRNSQPVITQVLGTPRQEMRDREREKSFKAASSSSKEEDIDMEEAITSDHEEKNVDKEDEEEEKGPEEIITSSPEKYDDETPVRRGRGRSKRKIEVETPVVSRFKKPRTGNAELQPMLGEMHTDIQGGVSASNDRMAQNDSTPDGDNEAEWESEQQKDTDVQSDAVYTNESDQIVTSKRTYAKHIVPSPTTGSTEKSVENVVWGVWGTKTWYAVKLVDTTANGLFEQGGANTGTLSVRFGNGDVTDLTTDKIRRFDIQVGDKVKLDNDRRPNFEVVELLQRPPVDGSVDETVVTTTTSPDGAWVGYEGVCFVKVQHTKTNKQTTVPIRLLYMSGTQISSYLSRRQLHKNAFQDGSNTLAASLRQQSKALERLTLTNNTSQSSNQFNQFTAIDSGGAKTQPTDHGVAQRGILSDCVFTISAIDNTKELEALTKTIIRNGGVVLNGGLQELFSVDYSTLEIKYNHTRNNFTFGGVLAKFAVRTPKYLEGLALGWPCLSFKFIIDSIAEGEMIQDWEPYLLSAGVSSALDQAYCSYNVRHFHQNWLEGATLADQFINRRLILGRNSILADRIYLHNPDSKDTAILFLLVAMAPQDKLELVNSRAEVPSGSVLIDMGRKPSTTSQASTSRPQLTQLRSGTSTTNHPKTIIYNREWIIQCLINQRIV
SIO_010081: AWJ20_4620
subclass of: SO_0000673
so part of: AWJ20_4620
location: 50474..53815
location: region:50474-53815:1
so has part: feature:50474-53815:1:exon

XP_018736154.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:50474-53815:1:exon

AWJ20_4621
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TDA9
locus tag: AWJ20_4621
so part of: sequence
location: <58577..>62152
location: region:58577-62152:1
so has part: feature:58577-62152:1:exon
subclass of: SO_0000010

30036774
type: Gene
SIO_000068: ncbigene

position:58577:1
position: 58577
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:62152:1
position: 62152
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:58577-62152:1:exon

AWJ20_4621
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TDA9
locus tag: AWJ20_4621
product: Tda9p
transcript id: XM_018881704.1
SIO_010081: AWJ20_4621
subclass of: SO_0000673
so part of: AWJ20_4621
location: <58577..>62152
location: region:58577-62152:1
so has part: feature:58577-62152:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:58577-62152:1:exon

AWJ20_4621
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TDA9
locus tag: AWJ20_4621
note: Transcription factor that regulates acetate production; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; null mutant is sensitive to expression of the top1-T722A allele; not an essential gene; TDA9 has a paralog, RSF2, that arose from the whole genome duplication; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 16785442]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA,IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_process: GO:0019413 - acetate biosynthetic process [Evidence IMP] [PMID 23240040]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]
codon start: 1
product: Tda9p
translation: MDMSVDVGVGRSDPATAAAAAASVSATAASTAGASSGSRRPTEPIPAKSAQVKTDKPRPHVCATCTRSFARLEHLKRHERSHTKEKPFQCPVCERCFARRDLLLRHKQKLHASFEPGRSNSTGGTSTVGGGIGVGGPRGGTKRKSSSVSSASAAAAAVSAATARGLGGINSMVVNSSPSSAPRSASLGFDANSNGHVSTAPYSNLLKSQLGGINGGRPHDTSASGNGTSTNSSSSGSGSAVSSTSPFSAFNGRPRPASFSAASASSYSKYKDIEVLNSQMYPSAPPEVGFSTPQLLPASLGNLDIPLEDLFDSDPLFINPQLLGQEDKNDGGSGQPGQSGQAHGQTTGQSSGQQSGQYDPQQQQQQQQHQQQQQQQQQHTPSMGPLDSATGAMSQTPQQQQQQQGQMQLSTPTQSHGQDAGSNHQPQQGQGQIHNFLQQHAANQAFNESLYTADTRSSISSNYKLEEDLSPNSVLAMEHDDFSWMPPSSDNYGRPTPQSILNSSSFSPPPNSSNNNYHLSGMNVANSESPLSLVGGNGQVNLSPNEGSGHMNSDFDHHMSPGIHEDMRDHKAFSLHIDGMDFWNNNNGINNSQSSFDENTLNLNGGNITGMGMRVNRGQVITPQLRLHILATLSTPTPFSSSQSPQLPSTLELQRYINSYTENFGKHMPFLHHSLEFTPDNVPLALGMAAIGALYTFEHASSSNIFEISRSCIHVYLESRREKRGSGDSDGFNSNKSTPIWLVQALVLGIIYGLFSGEPLANEIAVAQANAVISLAKSAGLHLPPSKYIQQPSPDLENAHIEEKWRYFIAAQERIRTMHVVHMISCLLATSYNVVSSLKNEDMKCGSPCDESLWTSTSSSEWWETISKKGLEDINPQQYFEGPNFNDYLQQLLQKNTLVGKIPQFTLLSLLYAVHYEIYQRRHTHDSYILNNRVTPSQHEITWLESQKLNIESILRAWETTWSLSPLASLSPSSQYGPLMSDAIPLSSLAHVRVYVNLSKVKEAFWKRDFNAMNHELDNLAVPTYYESVTNGSPSSPHKFDGLLEAASYAADAISLWEKHSIKWTLETTASQTFIHTLVSLFDCGLAVSEFIHRLEIKPQHEWSEDETMLVNRIGKIFYRVLDVVGHDSLDPNDTWARPLNEDGTLTRPGKLSVLTLLIVAKMLCKAYIWPFALVMGDALQFRSRHLSAFA
SIO_010081: AWJ20_4621
subclass of: SO_0000673
so part of: AWJ20_4621
location: 58577..62152
location: region:58577-62152:1
so has part: feature:58577-62152:1:exon

XP_018736155.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:58577-62152:1:exon

AWJ20_4622
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4622
so part of: sequence
location: complement(<62322..>66023)
location: region:62322-66023:-1
so has part: feature:62322-66023:-1:exon
subclass of: SO_0000010

30036775
type: Gene
SIO_000068: ncbigene

position:62322:-1
position: 62322
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:66023:-1
position: 66023
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:62322-66023:-1:exon

AWJ20_4622
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4622
product: hypothetical protein
transcript id: XM_018881705.1
SIO_010081: AWJ20_4622
subclass of: SO_0000673
so part of: AWJ20_4622
location: complement(<62322..>66023)
location: region:62322-66023:-1
so has part: feature:62322-66023:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:62322-66023:-1:exon

AWJ20_4622
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4622
inference: similar to AA sequence:KEGG_Orthology:K17263
codon start: 1
product: hypothetical protein
translation: MAAGSTEVSSGTISILPMAIRSVILNVTATPSVAHILAESILPGLYTGSNSGLLLNNNSEHSLDSMDILIDLIKRFGSSISAAEIVKTENVLLQIISGEQGIIKKRAVTAMGLLARYLTDKNWEKLTAYLIDGLTESSDLSQLRILIQLAGILARSEPTRFKNDLRPVIDLIIRKGLDVNDEGITGGRNVHRDEDFDDEEEEDNADDDEEANNPELLDLREASLASLEIIVGLGYQAVETQLNDILAISAYYIKYNPNIIDDEDDQDEDIDDEDEDIDDNDDDVEMEGHDGGEDSEFEVSDDEDAFSDDDDQSWKLRRYAAKLAAAVAIYIPTQLPRIYSQLLPPLVSMYASEKESTVKTEVISCLSEFFKAASDKGLYYSSKLSSNIATRRSSDISMATDMDPKLFLERHYLRKLVRVSLSELHSSTNTVILQSILTGILGNLVSVLHTRPSIQTSKIIRSLISLSKTQPGLMIDMLQLVSGIIRAQTTQELTDSLPQLLEIIVLGIYDKYYKVCGAALDVVLDLVAIHSDQSIKVDISVLLPALIEKAKSTSLDLDTRSKAVKALGQFIAKNDLSGSNIDTGCKLILDLLNNEGLRLTSVESISEIASGATVRQVSSKWIISSLEGLGNFLNQSSRTLRIGSLNAILSVTNRQPSSDQATVQALANIGQIILNHGKSILTSSPDAVALDLVSKILTNLVPFISVSEASEFTIQTINQTSSQTAVQISDSILGLLAAVVQHSTDAAALNAVYEELCRPRHVASASAGSSIGTNQNVELAAKALAVVITEGQMVDKIPSFETVVAQNGEDLKWSLLVLGYVGKLLPYTTSLEVLYDELNNNARDEITKTVIANSLGLIISNNVNNYLPDLLNRLKAAGSNTIHLHLLIIREIVSGAKTADVEAYSDDIWNSLFTSLDAVSSSGIGKVALAASTAAAGIVPNAEASVVSGGDLILAECLGRLSILNPRVFLPQLQVQLASEKPSVRVTVLSAVKFTFGQSHDTYDDLLRPIIADFLALVDDDDTGIRQVALSALVSAIHNKSHLLLPHLARLLPLLYRETRINTSLIHTVQMGPFKHKVDNGLELRKTAYETIYTLVSTLNAERLQSVGMIDELLDQVVLGSGLSDEHDIKVLSCVIIGRLASTCLSKVIAAGRLHQITTRYTTLLGVVVKENAIKQEFEKHNEIVRNIERSSTQINDAISQAISKGDASNLPSDLELGEWESFYRTKVLKKSV
SIO_010081: AWJ20_4622
subclass of: SO_0000673
so part of: AWJ20_4622
location: complement(62322..66023)
location: region:62322-66023:-1
so has part: feature:62322-66023:-1:exon

XP_018736156.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:62322-66023:-1:exon

AWJ20_4623
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4623
so part of: sequence
location: complement(<66204..>66434)
location: region:66204-66434:-1
so has part: feature:66204-66434:-1:exon
subclass of: SO_0000010

30036776
type: Gene
SIO_000068: ncbigene

position:66204:-1
position: 66204
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:66434:-1
position: 66434
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:66204-66434:-1:exon

AWJ20_4623
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4623
product: hypothetical protein
transcript id: XM_018881706.1
SIO_010081: AWJ20_4623
subclass of: SO_0000673
so part of: AWJ20_4623
location: complement(<66204..>66434)
location: region:66204-66434:-1
so has part: feature:66204-66434:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:66204-66434:-1:exon

AWJ20_4623
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4623
codon start: 1
product: hypothetical protein
translation: MQASRSYVIQASLDKLQDIDPDLRFMGFSDLNNEITNPDNAGLFSADVQLTRNVINAILSKLEDPITEVQNQAMKW
SIO_010081: AWJ20_4623
subclass of: SO_0000673
so part of: AWJ20_4623
location: complement(66204..66434)
location: region:66204-66434:-1
so has part: feature:66204-66434:-1:exon

XP_018736157.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:66204-66434:-1:exon

AWJ20_4624
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4624
so part of: sequence
location: <69670..>71322
location: region:69670-71322:1
so has part: feature:69670-71322:1:exon
subclass of: SO_0000010

30036777
type: Gene
SIO_000068: ncbigene

position:69670:1
position: 69670
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:71322:1
position: 71322
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:69670-71322:1:exon

AWJ20_4624
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4624
product: hypothetical protein
transcript id: XM_018881707.1
SIO_010081: AWJ20_4624
subclass of: SO_0000673
so part of: AWJ20_4624
location: <69670..>71322
location: region:69670-71322:1
so has part: feature:69670-71322:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:69670-71322:1:exon

AWJ20_4624
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4624
codon start: 1
product: hypothetical protein
translation: MTVASDVYNLSETYAEEPRPAKCIVIGAGVSGICFTYKAKQIMENFDFVIYEKNPEVGGTWYESRYPGCSCDIPSHSYTYSWTANPNWSRLYVGSEEIFDYFQGLAEKYGVYEKTKFETMVIGAKWLSDRDQWEVEVKDLKTGTVTKDYAEFLMNCGGLLNNWKWPDIPGFHDFKGTKLHSAKWDKSVDVTNKRVAVIGSGSSAIQIVPSIQPSVSHLVSFNRSPNWVTEEFSSELAFNGRETTYDEETRKKWAENREEFLKWRRRVEDTVNRGAELSLKGSELNEEVTSKARELMEKRLDYDPVLCKALIPEFPVGCKRITPGYLYLESLVEKNVEVVSVGIKHVTENGIVDNNGKLHELDIIVAATGFDTTFTPRFPIIGLDGIDLRDKWTKGPAAAYMSVAVPQLPNYFMTAGPNSPISNGSLIGTFETQIGYAMKLMQKVQKQGIRYMVPKEDATREFNYHKDVAMQRYTYSSNCTSWYKSSKPGAPISGPWPGSSIHFRQIMQTPRYEDYDYAYQTDNRFQYLGIGRSRREYEGKDLGWYVAFDE
SIO_010081: AWJ20_4624
subclass of: SO_0000673
so part of: AWJ20_4624
location: 69670..71322
location: region:69670-71322:1
so has part: feature:69670-71322:1:exon

XP_018736158.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:69670-71322:1:exon

AWJ20_4625
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PGK1
locus tag: AWJ20_4625
so part of: sequence
location: <73083..>74557
location: region:73083-74557:1
so has part: feature:73083-74557:1:exon
subclass of: SO_0000010

30036778
type: Gene
SIO_000068: ncbigene

position:73083:1
position: 73083
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:74557:1
position: 74557
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:73083-74557:1:exon

AWJ20_4625
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PGK1
locus tag: AWJ20_4625
product: phosphoglycerate kinase
transcript id: XM_018881708.1
SIO_010081: AWJ20_4625
subclass of: SO_0000673
so part of: AWJ20_4625
location: join(<73083..73152,73371..>74557)
location: region:73083-74557:1
so has part: feature:73083-73152:1:exon
so has part: feature:73371-74557:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:73083-73152:1:exon

position:73152:1
position: 73152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:73371-74557:1:exon

position:73371:1
position: 73371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

AWJ20_4625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PGK1
locus tag: AWJ20_4625
inference: similar to AA sequence:KEGG_Orthology:K00927
note: 3-phosphoglycerate kinase; catalyzes transfer of high-energy phosphoryl groups from the acyl phosphate of 1,3-bisphosphoglycerate to ADP to produce ATP; key enzyme in glycolysis and gluconeogenesis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16962558]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004618 - phosphoglycerate kinase activity [Evidence IEA,IEA]; GO_function: GO:0004618 - phosphoglycerate kinase activity [Evidence IDA] [PMID 6254992]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006094 - gluconeogenesis [Evidence IMP] [PMID 400791]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IMP] [PMID 400791]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]
codon start: 1
product: phosphoglycerate kinase
translation: MSLSNKLTIKDLDLKGKRVFIRVDVDFNVPLDGKTITNNQRIVAALPSIKYAKEQGAKAIILASHLGRPNGEVNEKYSLKPVADELSKLLDTKVAFLHDSVGPEVEAYVNKADNGEIILLENVRFHIEEEGSAKKDGQKIKADPAKVKEFREQLTKLADVYVNDAFGTSHRAHSSVVGLEVPQRAAGFLVSKELSFFAKALENPERPFLAILGGAKISDKIQLIDNLITKVNSLIIGGGMAFTFKKTLDNVEIGESLFDEAGSKVVASLVEKAKANNVELVFPVDYVTADKFDKDANVGSATDKSGIPSGWQGLDCGPESIKLYEAAISKAKTILWNGPPGVFEFEKFANGSKQTLNAVVKAAQNGSTVIIGGGDTATVAKKFGAEDKVSHVSTGGGASLELLEGKVLPGVAALSDKE
SIO_010081: AWJ20_4625
subclass of: SO_0000673
so part of: AWJ20_4625
location: join(73083..73152,73371..74557)
location: region:73083-74557:1
so has part: feature:73083-73152:1:exon
so has part: feature:73371-74557:1:exon

XP_018736159.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:73083-73152:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:73371-74557:1:exon

AWJ20_4626
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: GYP5
locus tag: AWJ20_4626
so part of: sequence
location: <76568..>79138
location: region:76568-79138:1
so has part: feature:76568-79138:1:exon
subclass of: SO_0000010

30036779
type: Gene
SIO_000068: ncbigene

position:76568:1
position: 76568
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:79138:1
position: 79138
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:76568-79138:1:exon

AWJ20_4626
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: GYP5
locus tag: AWJ20_4626
product: Gyp5p
transcript id: XM_018881709.1
SIO_010081: AWJ20_4626
subclass of: SO_0000673
so part of: AWJ20_4626
location: <76568..>79138
location: region:76568-79138:1
so has part: feature:76568-79138:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:76568-79138:1:exon

AWJ20_4626
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: GYP5
locus tag: AWJ20_4626
note: GTPase-activating protein (GAP) for yeast Rab family members; involved in ER to Golgi trafficking; exhibits GAP activity toward Ypt1p that is stimulated by Gyl1p, also acts on Sec4p; interacts with Gyl1p, Rvs161p and Rvs167p; involved in recruiting Rvs167p to the bud tip during polarized growth; relocalizes from bud neck to cytoplasm upon DNA replication stress; GYP5 has a paralog, GYL1, that arose from the whole genome duplication; GO_component: GO:0005798 - Golgi-associated vesicle [Evidence IDA] [PMID 15331637]; GO_component: GO:0005933 - cellular bud [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 15331637]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 15331637]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12189143]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 15331637]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15331637]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IGI,IPI,ISS] [PMID 12189143]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IGI,IPI] [PMID 15802519]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI,IPI] [PMID 15802519]; GO_process: GO:0006887 - exocytosis [Evidence IEA]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0032851 - positive regulation of Rab GTPase activity [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]…
codon start: 1
product: Gyp5p
translation: MQHQNLESVSITDSSVDFAKSVIVTKTKEISSVEDDVCSIVDDASSESTRFDVCSENEKALASETPAVVQFKTQAETESEAEAEAEADSRSDSEFTLNSPSISVDLYQSEANDEANDDACDKGMKADGSAAVSAVSSARSRSGTMSEVASIASDTRSVAASFAPSVASASPGAIDWESLTDIEMRMVTESDSLKLIFARRDFLLVQEAEYMSDNEGDESTETMARPDISCEEVREILLQAHSVIDSSSLVPGSQASATSLYPWKDIPMLKIADPSFYDTNELALWSAIISDYRKTSVKVPKYTSMMVYSGIPPALRGRVWKAMANAYSPTLLSLYDSLAAESTHFAKIIARDLNRTFPEISLFREKSGNGQAMLGRVMRAYSAYDIQVGYCQGLTFLVGPLLLHMNDRDAFCVMVRLMEDYDLRSMFTADMAGVPLRMYQFEYLLADILPELYEHFQKLGISTIYVSQWFLSMFAVTCPLSMLVRIFDLIFCEGAIPTLMRTSLAIMKRNQAQLLEFDDEEPILELLLGKSLWEVYNLDADLLCSDITSIDAAQVLHGLEVAERGYLSMGKLERARSRKNRGKIFGRGLNLTPKSPNKTPSSASASAQSSPSKLDKKPSRFFKWTSAATETPVINYPVDEEDTTMITATNKRGHKTLSTASTIKRTLSQGSLSSGSTMSSNLDDVFDSSNDDDSDDIDAQSAVVSTLDIKQPKSLSVSHSNPTLTRSPSELQLSQSLEIERKERQVDKDIFQSLLAQIPSEVIQSNPQLMSLSNELCQRLQISNDALNNTTPNTSCSSCDRLLLDLATARTNEALARQELDLLQDEMAHLKCEYPSVPVPKPQPTIHKSPSKWNLW
SIO_010081: AWJ20_4626
subclass of: SO_0000673
so part of: AWJ20_4626
location: 76568..79138
location: region:76568-79138:1
so has part: feature:76568-79138:1:exon

XP_018736160.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:76568-79138:1:exon

AWJ20_4627
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: VPS29
locus tag: AWJ20_4627
so part of: sequence
location: <80554..>81120
location: region:80554-81120:1
so has part: feature:80554-81120:1:exon
subclass of: SO_0000010

30036780
type: Gene
SIO_000068: ncbigene

position:80554:1
position: 80554
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:81120:1
position: 81120
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:80554-81120:1:exon

AWJ20_4627
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: VPS29
locus tag: AWJ20_4627
product: Vps29p
transcript id: XM_018881710.1
SIO_010081: AWJ20_4627
subclass of: SO_0000673
so part of: AWJ20_4627
location: <80554..>81120
location: region:80554-81120:1
so has part: feature:80554-81120:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:80554-81120:1:exon

AWJ20_4627
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: VPS29
locus tag: AWJ20_4627
inference: similar to AA sequence:KEGG_Orthology:K18467
note: Subunit of the membrane-associated retromer complex; endosomal protein; essential for endosome-to-Golgi retrograde transport; forms a subcomplex with Vps35p and Vps26p that selects cargo proteins for endosome-to-Golgi retrieval; GO_component: GO:0005768 - endosome [Evidence IPI] [PMID 9700157]; GO_component: GO:0030904 - retromer complex [Evidence IMP,IPI] [PMID 9700157]; GO_component: GO:0030906 - retromer complex, inner shell [Evidence IPI] [PMID 9700157]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP,IPI] [PMID 9700157]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IPI] [PMID 9700157]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Vps29p
translation: MSPSLPLNKVVTHGQLRIGFVAGHSVIPNSDPDALLITARQLDVDMLIWGGSHRVEAYQLEGKFFISPGSATGAFTTGWPEEDVDDETDAANGADVDNTDDHTTESNGTNSTKPPTSTDNDGQTTTTIDSDNKTGDNDDDADDDEHLDSTTPSFCLLDIQGSVCVLYIYSLIDGEVKVDKVSYRKDSP
SIO_010081: AWJ20_4627
subclass of: SO_0000673
so part of: AWJ20_4627
location: 80554..81120
location: region:80554-81120:1
so has part: feature:80554-81120:1:exon

XP_018736161.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:80554-81120:1:exon

AWJ20_4628
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SHM2
locus tag: AWJ20_4628
so part of: sequence
location: complement(<82014..>83429)
location: region:82014-83429:-1
so has part: feature:82014-83429:-1:exon
subclass of: SO_0000010

30036781
type: Gene
SIO_000068: ncbigene

position:82014:-1
position: 82014
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:83429:-1
position: 83429
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:82014-83429:-1:exon

AWJ20_4628
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SHM2
locus tag: AWJ20_4628
product: glycine hydroxymethyltransferase SHM2
transcript id: XM_018881711.1
SIO_010081: AWJ20_4628
subclass of: SO_0000673
so part of: AWJ20_4628
location: complement(<82014..>83429)
location: region:82014-83429:-1
so has part: feature:82014-83429:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:82014-83429:-1:exon

AWJ20_4628
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SHM2
locus tag: AWJ20_4628
inference: similar to AA sequence:KEGG_Orthology:K00600
note: Cytosolic serine hydroxymethyltransferase; converts serine to glycine plus 5,10 methylenetetrahydrofolate; major isoform involved in generating precursors for purine, pyrimidine, amino acid, and lipid biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12700234]; GO_component: GO:0005737 - cytoplasm [Evidence IMP] [PMID 8132653]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004372 - glycine hydroxymethyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004372 - glycine hydroxymethyltransferase activity [Evidence IMP] [PMID 8132653]; GO_function: GO:0004372 - glycine hydroxymethyltransferase activity [Evidence IMP] [PMID 9398220]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006563 - L-serine metabolic process [Evidence IEA]; GO_process: GO:0006544 - glycine metabolic process [Evidence IEA]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IEA]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IMP] [PMID 8132653]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IGI,IMP] [PMID 9398220]; GO_process: GO:0035999 - tetrahydrofolate interconversion [Evidence IEA]
codon start: 1
product: glycine hydroxymethyltransferase SHM2
translation: MSSYALSESHRHLLEEHVAEFDPEVAGIMKDEIARQRESIVLIASENFTSRAVFDALGSPMCNKYSEGYPGARYYGGNQHIDRIETLCQNRALEAFHVTADKWGVNVQTLSGSPANLQVYQAIMKPHERLMGLDLPHGGHLSHGYQTDARKISAVSTYFETMPYRVDLETGLIDYDMLEKTAVLFRPKVLVAGTSAYCRLIDYKRMREIADKVGAYLVVDMAHISGLIAAQVIPSPFEYADIVTTTTHKSLRGPRGAMIFFRRGVRSVNAKTGKEVLYDLEGPINFSVFPGHQGGPHNHTITALAVALKQANTPEFVAYQKQVLKNAKALEEAFKALNYTLVSNGTDSHMVLVSLRDKGIDGARIETVCELINIALNKNSIPGDKSALVPGGVRIGAPAMSTRGLGEEDFKRIVSYIDAAVKYSIDVQSNLPKEANKLKDFKATVAKDEDGRLAKLKAEITAWAQEFPLPV
SIO_010081: AWJ20_4628
subclass of: SO_0000673
so part of: AWJ20_4628
location: complement(82014..83429)
location: region:82014-83429:-1
so has part: feature:82014-83429:-1:exon

XP_018736162.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:82014-83429:-1:exon

AWJ20_4629
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4629
so part of: sequence
location: complement(<84309..>85184)
location: region:84309-85184:-1
so has part: feature:84309-85184:-1:exon
subclass of: SO_0000010

30036782
type: Gene
SIO_000068: ncbigene

position:84309:-1
position: 84309
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:85184:-1
position: 85184
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:84309-85184:-1:exon

AWJ20_4629
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4629
product: hypothetical protein
transcript id: XM_018881712.1
SIO_010081: AWJ20_4629
subclass of: SO_0000673
so part of: AWJ20_4629
location: complement(<84309..>85184)
location: region:84309-85184:-1
so has part: feature:84309-85184:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:84309-85184:-1:exon

AWJ20_4629
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4629
codon start: 1
product: hypothetical protein
translation: MGFSPNRIEAALKNAASDSLEDCIQWLEENEAKFEASEKFHQQLNADTSTAASGDHSGEPAESSADGAAASETEPPKPLTEEEKAAKLELLRQKAAIRKAEQAKKDLEEQKKNEVIRRKHDQESIRVKEELKKKEAMQAAARRRQEAKEDALAKKRIKDLIEADKRERLEKKQQLSSNPPPSLSSSSSSPSNAPTSSSTTSQPKPKPVYTESKLRFRIQGIASAQPNLMKTFPIDATLGSVAETLATELAIPANSIVLTTTFPTRTLTSADFSLTLKQADLVNASVILKQA
SIO_010081: AWJ20_4629
subclass of: SO_0000673
so part of: AWJ20_4629
location: complement(84309..85184)
location: region:84309-85184:-1
so has part: feature:84309-85184:-1:exon

XP_018736163.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:84309-85184:-1:exon

AWJ20_4630
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4630
so part of: sequence
location: <88864..>91776
location: region:88864-91776:1
so has part: feature:88864-91776:1:exon
subclass of: SO_0000010

30036784
type: Gene
SIO_000068: ncbigene

position:88864:1
position: 88864
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:91776:1
position: 91776
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:88864-91776:1:exon

AWJ20_4630
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4630
product: hypothetical protein
transcript id: XM_018881714.1
SIO_010081: AWJ20_4630
subclass of: SO_0000673
so part of: AWJ20_4630
location: <88864..>91776
location: region:88864-91776:1
so has part: feature:88864-91776:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:88864-91776:1:exon

AWJ20_4630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4630
codon start: 1
product: hypothetical protein
translation: MVLQNGAANGGVQGAAKVKLEQGPESTRPPVSGVSGRTPVVGGGAVTTINSRHAGSVPGSGSVQSSGGDGGAGVIRSREISGSAAGSGPSSSGPGSGGLRTRGRGGTTVSILNVDPETDGVAPQSFTVVSSLLQETYWGQNKSDEPDIGGPLGNSSGSAGSNGSAGNGTSNGTDSGSAGNGVTIGDVNGNGSANGSASASTHGTGASNSISGSPVVTAIGASTGGSTTHGVLSSNSTPGVSSAMDVDGATNGGGASKAVGGASIGILPDYNFQEYLSYEPTDPPDEHTADTLINSFLAGSQGRFPYIDRNVLQQTHKSRFDPPPNMDCPRYRFASFTLYTAYAISSVSYTPPPGEHPEYEPFRYYATALHHAKLCKSDNIMWKITALLMCAMFQMRTDKDKGCHYDMVRRAMKICVEVGLHKEVGLENMSKREQEMCRRLFWSVYSMERLFAISTGRPFVMDEKEINIPFPCDMDDIDLLDEAKIIEHEKYRDSGEVRPKTSMTFIIYIWTLRRLESDLVQAIYRVDRSIEERFSHVDFYLNKLKQWKESNRVTTPKEQNITNTAYSRDIRLLLQPFLGRLSPDSDLFQMCVRETGHICQIFRDFYRKKESGFTTMAMHTNFVAGLTLVYCLWLAKDSSILPILENVRSCTAALYVLTERSRLCMNYRDTFENLVSTTMKHIIEHRRQKRQRREMEELEHQRRLEQQELEKQQEIERLHKEEEEHRKMRERIEQERIEMVRQRMRQQQQQQQQQQQQQQQQQQQLQLVKQEPDDLAKSITTSPTPLDDNKHPPLTRITSALSTGSISSTSSTFPVIDRSPYLPSNNCATGIGGSVNGLPTTTPMPAPIQIAGPAIPDTAASFAQLQTQGAPPPAITPLPGTLAFNGPSGMELQKDWIEAYGYDDTLYNMIQDISSWTKQVGDATSQAAAVSGAAIVANGTVAATSAETGGWFNDNSTDNAWMNISDFGYS
SIO_010081: AWJ20_4630
subclass of: SO_0000673
so part of: AWJ20_4630
location: 88864..91776
location: region:88864-91776:1
so has part: feature:88864-91776:1:exon

XP_018736164.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:88864-91776:1:exon

AWJ20_4631
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: STI1
locus tag: AWJ20_4631
so part of: sequence
location: <92091..>93134
location: region:92091-93134:1
so has part: feature:92091-93134:1:exon
subclass of: SO_0000010

30036785
type: Gene
SIO_000068: ncbigene

position:92091:1
position: 92091
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:93134:1
position: 93134
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:92091-93134:1:exon

AWJ20_4631
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: STI1
locus tag: AWJ20_4631
product: Hsp90 cochaperone STI1
transcript id: XM_018881715.1
SIO_010081: AWJ20_4631
subclass of: SO_0000673
so part of: AWJ20_4631
location: <92091..>93134
location: region:92091-93134:1
so has part: feature:92091-93134:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:92091-93134:1:exon

AWJ20_4631
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: STI1
locus tag: AWJ20_4631
note: Hsp90 cochaperone; interacts with the Ssa group of the cytosolic Hsp70 chaperones and activates Ssa1p ATPase activity; interacts with Hsp90 chaperones and inhibits their ATPase activity; homolog of mammalian Hop; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 12525481]; GO_function: GO:0042030 - ATPase inhibitor activity [Evidence IDA] [PMID 21170051]; GO_function: GO:0030544 - Hsp70 protein binding [Evidence IDA] [PMID 12716905]; GO_function: GO:0051879 - Hsp90 protein binding [Evidence IDA] [PMID 12525481]; GO_function: GO:0051879 - Hsp90 protein binding [Evidence IDA] [PMID 9927435]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 21124907]; GO_process: GO:0006457 - protein folding [Evidence IGI,IMP] [PMID 8972212]; GO_process: GO:0006950 - response to stress [Evidence IEA]
codon start: 1
product: Hsp90 cochaperone STI1
translation: MAADAESFKAEGNSYYSQGLNQEAVDSYTKAIGISNSNPVYYSNRAAAYMKLGRWQAALDDCNKGLSFSHDVKLGSKLYWRQGICHRELGSLSLAEESFNEGLRRDPSNSVLREELARLQDILSSAPVAQTDSGLSEIKNNDSTASPINASESETTIPIQVVDTLPDIFSEPSAKVISHDDSNKTSHLHPLESIPTATDEKRNVQDIASPSASTSAQPALPLQIPSPLTFYNLMQLMRTPKSQLPQVYDHIFFNVPPSRYAEIHQTGGIDYEVIEFVLDSIAFVATNAQDKNWASRAVDILEGLAHCNRFSMSKMFVSTKRVQEVQRLLAESKLDASTLSRINDLYT
SIO_010081: AWJ20_4631
subclass of: SO_0000673
so part of: AWJ20_4631
location: 92091..93134
location: region:92091-93134:1
so has part: feature:92091-93134:1:exon

XP_018736165.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:92091-93134:1:exon

AWJ20_4632
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: YIH1
locus tag: AWJ20_4632
so part of: sequence
location: <93618..>94421
location: region:93618-94421:1
so has part: feature:93618-94421:1:exon
subclass of: SO_0000010

30036786
type: Gene
SIO_000068: ncbigene

position:93618:1
position: 93618
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:94421:1
position: 94421
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:93618-94421:1:exon

AWJ20_4632
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: YIH1
locus tag: AWJ20_4632
product: Yih1p
transcript id: XM_018881716.1
SIO_010081: AWJ20_4632
subclass of: SO_0000673
so part of: AWJ20_4632
location: <93618..>94421
location: region:93618-94421:1
so has part: feature:93618-94421:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:93618-94421:1:exon

AWJ20_4632
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: YIH1
locus tag: AWJ20_4632
note: Negative regulator of eIF2 kinase Gcn2p; competes with Gcn2p for binding to Gcn1p; may contribute to regulation of translation in response to starvation via regulation of Gcn2p; binds to monomeric actin and to ribosomes and polyribosomes; ortholog of mammalian IMPACT; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 22404850]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 22404850]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0003785 - actin monomer binding [Evidence IDA] [PMID 15126500]; GO_function: GO:0004860 - protein kinase inhibitor activity [Evidence IMP] [PMID 15126500]; GO_function: GO:0043022 - ribosome binding [Evidence IDA] [PMID 22404850]; GO_process: GO:0001933 - negative regulation of protein phosphorylation [Evidence IMP] [PMID 15126500]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]
codon start: 1
product: Yih1p
translation: MSNRSMSEIENEVEAINSIYEGCMSEWAPSIYDVHIPDSSVVVRLSFPSVYPEKAPAVMAVVKGRQELSPQLESLISSLFVVGEVIVFDFIESCREFLEQEGEGPDGADSGSYIDSPEASDVANGRDTGVDPTSSWIASEPVTDRKSLFIARVCRVESAQEAYDNIALLKTDKKISKATHNITAYRIKRSDGVSVQDCDDDGEDAAGGRLMHLLTLTDSWNVVVCVSRWYGGIKLGPDRFKHINSTARDALVKGGFISISKNSSKKH
SIO_010081: AWJ20_4632
subclass of: SO_0000673
so part of: AWJ20_4632
location: 93618..94421
location: region:93618-94421:1
so has part: feature:93618-94421:1:exon

XP_018736166.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:93618-94421:1:exon

AWJ20_4633
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PWP2
locus tag: AWJ20_4633
so part of: sequence
location: <95708..>98530
location: region:95708-98530:1
so has part: feature:95708-98530:1:exon
subclass of: SO_0000010

30036787
type: Gene
SIO_000068: ncbigene

position:95708:1
position: 95708
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:98530:1
position: 98530
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:95708-98530:1:exon

AWJ20_4633
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PWP2
locus tag: AWJ20_4633
product: Pwp2p
transcript id: XM_018881717.1
SIO_010081: AWJ20_4633
subclass of: SO_0000673
so part of: AWJ20_4633
location: <95708..>98530
location: region:95708-98530:1
so has part: feature:95708-98530:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:95708-98530:1:exon

AWJ20_4633
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PWP2
locus tag: AWJ20_4633
inference: similar to AA sequence:KEGG_Orthology:K14558
note: Conserved 90S pre-ribosomal component; essential for proper endonucleolytic cleavage of the 35 S rRNA precursor at A0, A1, and A2 sites; contains eight WD-repeats; PWP2 deletion leads to defects in cell cycle and bud morphogenesis; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 15231838]; GO_component: GO:0034388 - Pwp2p-containing subcomplex of 90S preribosome [Evidence IDA] [PMID 15231838]; GO_component: GO:0034388 - Pwp2p-containing subcomplex of 90S preribosome [Evidence IDA] [PMID 17515605]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8804409]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12150911]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0030515 - snoRNA binding [Evidence IPI] [PMID 12068309]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IMP] [PMID 8804409]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15231838]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15231838]; GO_process: GO:0000447 - endonuc…
codon start: 1
product: Pwp2p
translation: MSLDFKLSNLLGTVYRQGNLLFTPDGTSILSPVGNRVSCFDLVNSSSFTFTYEHRKNISRIALNPQATLMLTVDEDGRGILVNFVRRTTIHHFNFKERVSDIQFSPDGRHFAVAAGRHIQVWKTPNRNDDRQFAPFVRHRIYTGHYADVTSITWSNDSRFFLTCSKDLTARVYSLIATDSSAATILAGHKDSVISAFFSQDQETIYTVSKDGALFEWKYISKPKRLGGSTQSKEEAEDEEQDEETDLDANGNPIEYKFRWRIVNKHFFMQDNAKVRCAAFHAPTNLLVVGFSTGIFGLYELPEFTNLQILNISQNDIDFVTINKTGEWLAFGASKLGQLLVWEWQSESYIIKQQGHYDAMNSLVYSPDGSKIVTASDDGKIKVWDAISGFAIVTFTEHTSAVTSLQFSKKGSVLFSASLDGSIRAWDLIRYRNFRTFTSPHRIQFTSLAIDPSGEVVCAGSLDDFDIHLWSVQTSQLLDRLSGHQGPVSSLCFGNEGGLLVSGSWDKTVRIWSIFGRTSNVEPLQLQSEVMSVAMRPDSKRVAVATTDGQLSFWDPELGKQVGNIDGREDIAGGRHLTDRFSAANSQRSKHFTTLCYSADGSSILAGGNSKYIALYDVANEVLLTRFTISRNMAIDGTVDQLNSKNMTESGPLGLIDTSGEASDLEDRIDNTLPGATRGDASVRKVRPAIRTTSIQFSPTGRSFAAASTEGLLLYSVDELLIFDPFDLDIDVTVDTTLEKLAEKDYLIALVMAFRLGERSIIHQVYESIPFQDIELISRDLPQVYLERLLRFISSISEESPHIEFNLLWIQHLITYHGRFMVQRRHEFASAMRGLQKFVSRIGKDIIKLSRTNIYLIRYLTGGVATIDSSLLEGMDVDSDEQENREVVPTNSMGVEHEEDEDEDEEDGWFGPESRTEGINGKSATSGSDDEGVSEAEEDE
SIO_010081: AWJ20_4633
subclass of: SO_0000673
so part of: AWJ20_4633
location: 95708..98530
location: region:95708-98530:1
so has part: feature:95708-98530:1:exon

XP_018736167.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:95708-98530:1:exon

AWJ20_4634
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CTR86
locus tag: AWJ20_4634
so part of: sequence
location: <99978..>101096
location: region:99978-101096:1
so has part: feature:99978-101096:1:exon
subclass of: SO_0000010

30036788
type: Gene
SIO_000068: ncbigene

position:99978:1
position: 99978
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:101096:1
position: 101096
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:99978-101096:1:exon

AWJ20_4634
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CTR86
locus tag: AWJ20_4634
product: Ctr86p
transcript id: XM_018881718.1
SIO_010081: AWJ20_4634
subclass of: SO_0000673
so part of: AWJ20_4634
location: <99978..>101096
location: region:99978-101096:1
so has part: feature:99978-101096:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:99978-101096:1:exon

AWJ20_4634
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CTR86
locus tag: AWJ20_4634
inference: similar to AA sequence:KEGG_Orthology:K19323
note: Essential hypothetical protein; with orthologs in Ashbya gossypii and Candida albicans; similar to human ATXN10, mutations in which cause spinocerebellar ataxia type 10; codon usage corresponds to that observed for yeast genes expressed at low levels; relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009088 - threonine biosynthetic process [Evidence IEA]
codon start: 1
product: Ctr86p
translation: MCNEMTTSLKTEVLESPLEIVLKGSNTKFITAFKELLLHPVYSRPTLQFIESSVKLAPNRARVLAESEHGRLIFIQLLKQTESWYSGEDNFYLHLLNSIISQLLSADLGNLFLSTFSEPIVNEDERLSLLKIVDAAIDSLLERKSTTLDCQPLLEILFRDFTTASAQAIPFIRSADTSPEYSDSLLSQLTNIWNRLIVLLDIYQTILDNQPSLKPEILKDNIIEELVSLLGEAQKSLPRRSKLADLEKSASKSSSGNVSDHDDLDPKDFPLIKGKIIYLLGTLVQENKQVQDLVRQLQGLELVLTNCIIDLNNPFIRERSILCLRYLLANNPENQDFVAKMEAKETVSEDALHEAGYETELVNGKLALKKRT
SIO_010081: AWJ20_4634
subclass of: SO_0000673
so part of: AWJ20_4634
location: 99978..101096
location: region:99978-101096:1
so has part: feature:99978-101096:1:exon

XP_018736168.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:99978-101096:1:exon

AWJ20_4635
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4635
so part of: sequence
location: complement(<101252..>103252)
location: region:101252-103252:-1
so has part: feature:101252-103252:-1:exon
subclass of: SO_0000010

30036789
type: Gene
SIO_000068: ncbigene

position:101252:-1
position: 101252
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:103252:-1
position: 103252
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:101252-103252:-1:exon

AWJ20_4635
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4635
product: hypothetical protein
transcript id: XM_018881719.1
SIO_010081: AWJ20_4635
subclass of: SO_0000673
so part of: AWJ20_4635
location: complement(<101252..>103252)
location: region:101252-103252:-1
so has part: feature:101252-103252:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:101252-103252:-1:exon

AWJ20_4635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4635
codon start: 1
product: hypothetical protein
translation: MSSSRTSRARHGRKRRLGNSQPSAGLRFTRISCAVIWCLLAGAPIFGFSAFKQVLVANGVYREFCTPQEVEWWSEKGSHGPLLCTEQDYRLNSMFAYALAISGLLVLPVSAILDVYGPRVCGILASILLTFASLSLRAGTSITVGPYLDGYILGYILLGCASPPLFMSSLQLSTSFPKYGGSILVLLTAAMDGSSAVFLAFKLADRNGYIGSISQFFTWYLFVPAFVFISQFVIMPSRGFKTVAELQRIIEVSSPFTLAGKSRGDEENNADDDGYSYKWYRQQNNGHNGSRGDSTGAGNSYSFPEIASSQNEDSTPGEIDFTGAYRDNIDGNRATSGINVSSTVPRSESLSPNTSTINDGDDAEGENSPLLQHGDSSETFDDNDEYNNILADEEEAVANLNLVKDVTEVSGVWGALHNARVSQQLTSMWFILIILFSAVTTLHINYFIASIWKSYNYRLDGDTTSGSREVKLILDYFDFALPIGSILSVPFIGFILDNMSTLRAFTIIYVLAISIGFLQLVSGSVVAGCLGITLFVPYRSLLFTAIPDYTVNIFGFHTFGLVYGLILAVSGLANLLILQFNSGPLKMHHRLADPNSTNELLLGLTALVGLVLIMYIWLQGKKIRRKQLEDEAESAPIQQMPEARITTNHDCRSGTCDDCVCEANVN
SIO_010081: AWJ20_4635
subclass of: SO_0000673
so part of: AWJ20_4635
location: complement(101252..103252)
location: region:101252-103252:-1
so has part: feature:101252-103252:-1:exon

XP_018736169.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:101252-103252:-1:exon

AWJ20_4636
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4636
so part of: sequence
location: complement(<104652..>106517)
location: region:104652-106517:-1
so has part: feature:104652-106517:-1:exon
subclass of: SO_0000010

30036790
type: Gene
SIO_000068: ncbigene

position:104652:-1
position: 104652
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:106517:-1
position: 106517
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:104652-106517:-1:exon

AWJ20_4636
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4636
product: hypothetical protein
transcript id: XM_018881720.1
SIO_010081: AWJ20_4636
subclass of: SO_0000673
so part of: AWJ20_4636
location: complement(<104652..>106517)
location: region:104652-106517:-1
so has part: feature:104652-106517:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:104652-106517:-1:exon

AWJ20_4636
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4636
codon start: 1
product: hypothetical protein
translation: MTGDSSSDVLDVVNQLRAKENDLTFVASTVVPVFMSSRQRFEKLQPEIIEAIVNTPVSTYTVPWIFALWAVLENESLSWRFVQLFRQFMTSFRADHARLAGFALAELLERIDSTGSSEYISPPYAIGIATGLRRGVGKLNHEVRGESDQRPLELSRLHSSLAYWSVISKRYIFAKDMLAPTNRYVRPAKDYPISQIDVLFFHYYSSIVLIAEKRYFQAAQYLTVVLNVPTVDERISSDLNRIQCDLRIASYAKWVCISLLHSGHVPSLSNLISDELVQSIRKHCEEYDTLSTLLRGNFHDKNMATSLEAIQEYINTQSDKFANDDNLDLVQLCFEKYKRDYVRTLQTKVSSSMSIDYLDSRMGPLNPSQKQQHKGKLTLNTRTDSNCDHSNESHDNDNSDTGANNVSNSINESVYDYVNNLILSGQTDGEYKLLDAADKPPHLISTEPTSKALSHMNQHMLQMIDSIINTAQDLDATMYDLVASGKFRSLLSKLSSKRPHLASVYAEFNEESLGDGYGGLPSQFGLAARGSGQINIPGLEAAMFGRRRPDSMNQIQISSGTGRRRGPGTIKSSARRRQAAPRMRQGSNHRSRHESTGSASSSEDAYDPMERDSENDDSTES
SIO_010081: AWJ20_4636
subclass of: SO_0000673
so part of: AWJ20_4636
location: complement(104652..106517)
location: region:104652-106517:-1
so has part: feature:104652-106517:-1:exon

XP_018736170.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:104652-106517:-1:exon

AWJ20_4637
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PRO2
locus tag: AWJ20_4637
so part of: sequence
location: <108419..>109786
location: region:108419-109786:1
so has part: feature:108419-109786:1:exon
subclass of: SO_0000010

30036791
type: Gene
SIO_000068: ncbigene

position:108419:1
position: 108419
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:109786:1
position: 109786
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:108419-109786:1:exon

AWJ20_4637
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PRO2
locus tag: AWJ20_4637
product: glutamate-5-semialdehyde dehydrogenase
transcript id: XM_018881721.1
SIO_010081: AWJ20_4637
subclass of: SO_0000673
so part of: AWJ20_4637
location: <108419..>109786
location: region:108419-109786:1
so has part: feature:108419-109786:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:108419-109786:1:exon

AWJ20_4637
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PRO2
locus tag: AWJ20_4637
inference: similar to AA sequence:KEGG_Orthology:K00147
note: Gamma-glutamyl phosphate reductase; catalyzes the second step in proline biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0004350 - glutamate-5-semialdehyde dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0004350 - glutamate-5-semialdehyde dehydrogenase activity [Evidence IDA] [PMID 12513997]; GO_function: GO:0004350 - glutamate-5-semialdehyde dehydrogenase activity [Evidence IGI] [PMID 2824433]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0055129 - L-proline biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006561 - proline biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006561 - proline biosynthetic process [Evidence TAS] [PMID 11084050]; GO_process: GO:0006561 - proline biosynthetic process [Evidence IDA] [PMID 12513997]
codon start: 1
product: glutamate-5-semialdehyde dehydrogenase
translation: MAENLAKSARKASNILKTLSNDKRTSALKVIHDSLRDSKDEIIEANKLDLKLAEEADLPDSLIRRLDLAKGDKYDSMLQGILDVAALEDPVGRISLSRHLDDGLDLYRVSCPVGVLLVIFEARPEVIANITALAIKSGNAAILKGGKESLHTFSAMATAVKKALAKTSIPPDAIHLVSTREQVGELLHQDKYIDLVIPRGSNELVRQIKASTRIAVLGHADGICSIYVHDDADGEMAGKIIVDSKVNYPAGCNAVETVLINKNLLSTSNPAGQAKVTSIIEQLVDAKVKVKIAPEIEAFLTSGDNSSPSTIAIPCPQIEPATEADFDREFLSLTIAIKSITDIDEAIAHINEHGSHHTDAIITASKDKAEKFLKGVDSAGVFWNASTRFADGFRFGFGTEVGVSTNKLHARGPVGLEGLMSYQYQIKGSGQIVGDYAGSGGSKRYLHQDFTVDNN
SIO_010081: AWJ20_4637
subclass of: SO_0000673
so part of: AWJ20_4637
location: 108419..109786
location: region:108419-109786:1
so has part: feature:108419-109786:1:exon

XP_018736171.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:108419-109786:1:exon

AWJ20_4638
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: DRS2
locus tag: AWJ20_4638
so part of: sequence
location: complement(<109973..>112303)
location: region:109973-112303:-1
so has part: feature:109973-112303:-1:exon
subclass of: SO_0000010

30036792
type: Gene
SIO_000068: ncbigene

position:109973:-1
position: 109973
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:112303:-1
position: 112303
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:109973-112303:-1:exon

AWJ20_4638
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: DRS2
locus tag: AWJ20_4638
product: aminophospholipid-translocating P4-type ATPase DRS2
transcript id: XM_018881722.1
SIO_010081: AWJ20_4638
subclass of: SO_0000673
so part of: AWJ20_4638
location: complement(<109973..>112303)
location: region:109973-112303:-1
so has part: feature:109973-112303:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:109973-112303:-1:exon

AWJ20_4638
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: DRS2
locus tag: AWJ20_4638
inference: similar to AA sequence:KEGG_Orthology:K14802
note: Trans-golgi network aminophospholipid translocase (flippase); maintains membrane lipid asymmetry in post-Golgi secretory vesicles; contributes to clathrin-coated vesicle formation and endocytosis; subject to auto-inhibition by its C-terminal tail; mutations in human homolog ATP8B1 result in liver disease; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 10601336]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 12221123]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 15090616]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IGI] [PMID 15090616]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IMP] [PMID 15249668]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IGI,IMP] [PMID 16452632]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IMP] [PMID 8633245]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0032456 - endocytic recycling [Evidence IMP] [PMID 24272750]; GO_process: GO:0006897 - endocytosis [Evidence IGI] [PMID 12631737]; GO_process: GO:0006897 - endocytosis [Evidence IGI] [PMID 16195350]; GO_process: GO:000…
codon start: 1
product: aminophospholipid-translocating P4-type ATPase DRS2
translation: MYYKDTDTPAVCRTSSLVEELGQIEYIFSDKTGTLTRNIMEFKSCSIAGRSYASEIPEDRKLTVVDGVEVGFRSFDAMIEDMDEPELGQVVQEFFTLLASCHTVIPELKDNGKIKYQAASPDEGALVEGAASVGFKFTIRRPKFITVDIRGQDYEYELLNICEFNSTRKRMSTIFRCPDGKIRLYCKGADTVILERLAPENPFVTDTMAHLEEFAGEGLRTLCLAMRVVPDDEYQEWARIFDEAATSMDNRAQKLDDAAELIERDLFLLGATAIEDKLQEGVPETIHTLQDAGIKIWVLTGDRQETAINIGMSCKLLSEDMNLLIINEENYEAVRDNIAKKVAAIRGNQVSSAEYDTLALVIDGKSLGFALEPSLEKDFLDLAVICKAVICCRVSPLQKALVVKLVKRHMKSLLLAIGDGANDVSMIQAAHVGVGISGMEGMQAARSADVSIGQFKYLRKLLLVHGSWSYHRLSRAILYSFYKNIALYMTQFWYVFANGFSGQSIYESWTITFYNVLCTVLPPFILGIFDQFISARLLDRYPQLYQLGQRSAFLNVRHFWEWVLNGFYHSIILYIGSVYAYRYGQVLSNGLIADHWTWGTALFTACVLTTLAKAALVTNMWNKYTVIAIPGSFFIWLGFFPAYATIAPLVNVSDEYRGVLPHLYPTLVFWATILILPCLCLIRDFAWKYYKRMYKPESYHHVQEIQKYNIADYRPRMEQFQKAIRKVRQVQRMRKQRGFAFSQADEGAGQATRVVRAYDTTQSRGQYGEMKPARQQ
SIO_010081: AWJ20_4638
subclass of: SO_0000673
so part of: AWJ20_4638
location: complement(109973..112303)
location: region:109973-112303:-1
so has part: feature:109973-112303:-1:exon

XP_018736172.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:109973-112303:-1:exon

AWJ20_4639
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: DRS2
locus tag: AWJ20_4639
so part of: sequence
location: complement(<112477..>114270)
location: region:112477-114270:-1
so has part: feature:112477-114270:-1:exon
subclass of: SO_0000010

30036793
type: Gene
SIO_000068: ncbigene

position:112477:-1
position: 112477
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:114270:-1
position: 114270
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:112477-114270:-1:exon

AWJ20_4639
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: DRS2
locus tag: AWJ20_4639
product: aminophospholipid-translocating P4-type ATPase DRS2
transcript id: XM_018881723.1
SIO_010081: AWJ20_4639
subclass of: SO_0000673
so part of: AWJ20_4639
location: complement(<112477..>114270)
location: region:112477-114270:-1
so has part: feature:112477-114270:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:112477-114270:-1:exon

AWJ20_4639
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: DRS2
locus tag: AWJ20_4639
inference: similar to AA sequence:KEGG_Orthology:K14802
note: Trans-golgi network aminophospholipid translocase (flippase); maintains membrane lipid asymmetry in post-Golgi secretory vesicles; contributes to clathrin-coated vesicle formation and endocytosis; subject to auto-inhibition by its C-terminal tail; mutations in human homolog ATP8B1 result in liver disease; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 10601336]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 12221123]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 15090616]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IGI] [PMID 15090616]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IMP] [PMID 15249668]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IGI,IMP] [PMID 16452632]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IMP] [PMID 8633245]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0032456 - endocytic recycling [Evidence IMP] [PMID 24272750]; GO_process: GO:0006897 - endocytosis [Evidence IGI] [PMID 12631737]; GO_process: GO:0006897 - endocytosis [Evidence IGI] [PMID 16195350]; GO_process: GO:000…
codon start: 1
product: aminophospholipid-translocating P4-type ATPase DRS2
translation: MANYHGRGQAGNIPDEFSLIDHPSVPDPEPENPFDSRNASTTQIGHTSTSAPLAGHDEDLDLFNGDSYHTNTTGNGGTRNGISASNGGIQQTSSNPGDWDYLTPVDSSPYYDSPYNNASNPYLDGTGIVSGHDQDDFIMDSGSGIGSGSGRHDTIGLTHQATGKHYGAKGGISGFYSNVRSKLGLNPAYTEMDLPLTEHATAGGAGRGGSGAATGIGSGSRVGFSGGAGGSGSGGRGANEDRTETANDYDIRKFYYKLLGKKMPDASSLGPRIVTLNDPAANQLGYKGNHISTTKYNAFTFIPKFLFEQFSKYANLFFLCTALIQQVPNVTPTNRYTTIGTLAVVLLVSAFKELVEDVKRSNADKELNNSKVEVLNTNGEFETRRWVKLSVGDIVRIKSEEPFPADILLLASSEPEGLCYIETANLDGETNLKIKQSRVETSTLVSTQDLSRLRGRILSEQPNSSLYTYEATLELTGQDKMALAPDQLLLRGATLRNTPWIHGVVVFTGHETKLMRNATAAPIKRTAVEHMINLQIIFLFSILLILAIVSSMGNVIKIKVTASTMWYLQLEGTSLVKQFFQDLLTYWVLFSNLVPIR
SIO_010081: AWJ20_4639
subclass of: SO_0000673
so part of: AWJ20_4639
location: complement(112477..114270)
location: region:112477-114270:-1
so has part: feature:112477-114270:-1:exon

XP_018736173.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:112477-114270:-1:exon

AWJ20_4640
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MNN10
locus tag: AWJ20_4640
so part of: sequence
location: <121028..>122083
location: region:121028-122083:1
so has part: feature:121028-122083:1:exon
subclass of: SO_0000010

30036795
type: Gene
SIO_000068: ncbigene

position:121028:1
position: 121028
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:122083:1
position: 122083
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:121028-122083:1:exon

AWJ20_4640
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MNN10
locus tag: AWJ20_4640
product: Mnn10p
transcript id: XM_018881725.1
SIO_010081: AWJ20_4640
subclass of: SO_0000673
so part of: AWJ20_4640
location: <121028..>122083
location: region:121028-122083:1
so has part: feature:121028-122083:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:121028-122083:1:exon

AWJ20_4640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MNN10
locus tag: AWJ20_4640
inference: similar to AA sequence:KEGG_Orthology:K05531
note: Subunit of a Golgi mannosyltransferase complex; complex mediates elongation of the polysaccharide mannan backbone; membrane protein of the mannosyltransferase family; other members of the complex are Anp1p, Mnn9p, Mnn11p, and Hoc1p; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0000136 - alpha-1,6-mannosyltransferase complex [Evidence IDA] [PMID 10037752]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000009 - alpha-1,6-mannosyltransferase activity [Evidence IDA] [PMID 10037752]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0000917 - barrier septum assembly [Evidence IMP] [PMID 16034811]; GO_process: GO:0000032 - cell wall mannoprotein biosynthetic process [Evidence IMP] [PMID 10037752]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 23210626]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 8991513]
codon start: 1
product: Mnn10p
translation: MFKSEKGWKSRRPSSTSFWNFSGSSPMSPASSHNRVAAPAYRPLLNFLLRRKILIVIFIFILLLSLFTAVPFLPHFSFGSANYVIILAANEGGGVMQWKGAREWSVERSSIANKKQYAERHGYNLAIKDVSAKKRYAHEWRESWEKVDIIKETMRQFPNAEWFWWLDLHTYIMEPQISLDSHIFRNLYNETYRDASYFNPLSIPIEIPYVDYNQPIDLVISQDCGGFNLGSFFIRRSEWTEKLLDIWWDPVFYEQKHMDWEHKEQDALETLYRNQAWIRGRVGFIPLRKMNSFPPGACSDMADDSRLFYNEKERDFVVNMAGCEWGRDCWGEMEHYKALSKKLHQKKFWFF
SIO_010081: AWJ20_4640
subclass of: SO_0000673
so part of: AWJ20_4640
location: 121028..122083
location: region:121028-122083:1
so has part: feature:121028-122083:1:exon

XP_018736174.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:121028-122083:1:exon

AWJ20_4641
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ENV9
locus tag: AWJ20_4641
so part of: sequence
location: complement(<123523..>124443)
location: region:123523-124443:-1
so has part: feature:123523-124443:-1:exon
subclass of: SO_0000010

30036796
type: Gene
SIO_000068: ncbigene

position:123523:-1
position: 123523
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:124443:-1
position: 124443
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:123523-124443:-1:exon

AWJ20_4641
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ENV9
locus tag: AWJ20_4641
product: Env9p
transcript id: XM_018881726.1
SIO_010081: AWJ20_4641
subclass of: SO_0000673
so part of: AWJ20_4641
location: complement(<123523..>124443)
location: region:123523-124443:-1
so has part: feature:123523-124443:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:123523-124443:-1:exon

AWJ20_4641
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ENV9
locus tag: AWJ20_4641
note: Protein proposed to be involved in vacuolar functions; mutant shows defect in CPY processing and defects in vacuolar morphology; has similarity to oxidoreductases, found in lipid particles; required for replication of Brome mosaic virus in S. cerevisiae, a model system for studying replication of positive-strand RNA viruses in their natural hosts; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence ISS] [PMID 8972580]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006624 - vacuolar protein processing [Evidence IMP] [PMID 21912603]; GO_process: GO:0007033 - vacuole organization [Evidence IMP] [PMID 21912603]
codon start: 1
product: Env9p
translation: MVFFGPCWSVDSLPDFSGKSVFITGGNTGIGKHTVTELARKNMGKIYLAGRNPTRCEAAIAEIKKEVPNANIEYVKLDVSKLDDVKQVAEKFVNEHTSLNYLVNNAGIMATPYELNNDGYEMQFATNYMGHALLTRIMLPLLEKTAKDGDEVKIINVSSFAHNFAPRVGINFEDVNLTKGSVWDRYGQSKLANILLNNELTKRYPQIKSYSLHPGFVRTDLYDGMNSTYGILGRIANAVTKPFYITPYNGAITTLYCFSVEANDKAGEYLVPYGKVGSLTRNAKNQELSSKLWDWTTNELTNKHYI
SIO_010081: AWJ20_4641
subclass of: SO_0000673
so part of: AWJ20_4641
location: complement(123523..124443)
location: region:123523-124443:-1
so has part: feature:123523-124443:-1:exon

XP_018736175.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:123523-124443:-1:exon

AWJ20_4642
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SWI1
locus tag: AWJ20_4642
so part of: sequence
location: <126168..>130211
location: region:126168-130211:1
so has part: feature:126168-130211:1:exon
subclass of: SO_0000010

30036797
type: Gene
SIO_000068: ncbigene

position:126168:1
position: 126168
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:130211:1
position: 130211
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:126168-130211:1:exon

AWJ20_4642
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SWI1
locus tag: AWJ20_4642
product: Swi1p
transcript id: XM_018881727.1
SIO_010081: AWJ20_4642
subclass of: SO_0000673
so part of: AWJ20_4642
location: <126168..>130211
location: region:126168-130211:1
so has part: feature:126168-130211:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:126168-130211:1:exon

AWJ20_4642
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SWI1
locus tag: AWJ20_4642
inference: similar to AA sequence:KEGG_Orthology:K11771
note: Subunit of the SWI/SNF chromatin remodeling complex; regulates transcription by remodeling chromatin; required for transcription of many genes, including ADH1, ADH2, GAL1, HO, INO1 and SUC2; can form the prion [SWI+]; human homolog ARID1A is a candidate tumor suppressor gene in breast cancer; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 18644858]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 8016655]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 8127913]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA,IMP] [PMID 8159677]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 3143101]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IPI] [PMID 11865042]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IMP,IPI] [PMID 14580348]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IDA] [PMID 8016655]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IMP] [PMID 10198436]; GO_process: GO:0000436 - carbon catabolite activation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 14580348]; GO_process: GO:0044109 - cellular alcohol catabolic process [Evidence IMP] [PMID 1339306]; GO_process: GO:0031496 - positive regulation of mating type switching [Evidence IMP] [PMID 6436497]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 1339306]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 3542227]; GO_process: GO:0045944 - positive r…
codon start: 1
product: Swi1p
translation: MDPSSPATDVLQSQQGTIQPSALYSPSLFSNMSPQMENASPALSNSGANSGGNPTNANNSNISMNSPFMGGISQGRSHSDAASVSPHQRPTPLPAQLLQEVHSGSNSPMIGQQQGFQGQSQQQQQQANQMQNAGGRLSTGTQPDNGLGSDISQQFNGGNDLGLMYQQQMLGQQQQQTNQNQNQNRMFPNQNQASNQNQNQGLNQNQNSNQNLPLNFNPNQGQNQNQHGPGSGPNQMPGQVPGQIPPGQVPGQGGLGNQGFLSTLTPAQLQPIRNQLRLLSPQNQEEFIRRLGMLPPQNLIQAIQQLASQQQKMAAAQNSRNQAQARNQMNQRQPNQQLNQLNNQQNQPNVPPGQQNQFQFVMQQNRQKSPQVNVNQPSQIPPNQKYPAGGPSGPMGPNNSGTSGPGGLNMSSAAASTMSKADQFVKSLFEFMQRRGTPINSFPTVGESRVHPFALYATVMKFGGSAKVTRAQQWPNVTQALGYMPSMSEEVSRIYNNILRPFEEFLLTSQLRNKGLKANLPGQAGQVPMGQVPSPSPAQGPIKGPGMVPGQVAGPGSNQDSNQGPNVPQTPFGQQAQPSPQVPQSQMPMSMIPMQMGQTPQTQIQQQQPPSGLRQSATPQPQTKARQTSQSRGKQTASPIPVHMPGPMQSPAVGGSPEVQAKLTPRRTPSSRKSSTASSPALVPVPALPAASPTPIIKPKHFVPHENRKYAPKKRLVEKHGGYDIRVLAGIGREIENIRSDFPFTHELGTFDVHAITMAVNSTIAGEVRQALDKLMVITADPRCYFSLVESPGLLTGLAECGLVITKGLASSKPDGKALATTKHYDVNDSLFGEGVKSNIDAVFESYKSKLGKEDVDLVIDVDTLTGVEVGRVEDDKPTEKIQEDDISVHKKAEGQESKDTINEKASEQDGLKPFGFTNYLTLLKKTSSENEELEFDYKTPEIDQFWVTASVDRLLSITTILRNLSFVDQNRSILINEPTSREFLFGLLYSLAENANLLPNSKQTLDLMKDLVTIFSNLAPVLILDSAKDALVLLLFILAFTPTPIPLTTSKDGIVFGRYTPVVHRYLPYAVDILAKVLPRDPPNRDLFESIFLGTCTNFEYLQLLQRYFNGRPADPYELMTCAFGLVISTVPHDDLSVIPRGLELARPLLHQSLLVAEMLAEMIKFEKPTRSNTNGTVDADEDNDIEMSESDKSFGKEKEQNNLSDFLKEFKEKKANYNLAYEWLSASDGFGHALLRAACALGAVVGNGRARDEERNPFARITQRSITVLRILGKKAMEYDSQDGALTGSEKAIVQLPSGVLPTIEALLGAMLASEMDKYVVGQICRFCDEGNEHLIKASSSLERP
SIO_010081: AWJ20_4642
subclass of: SO_0000673
so part of: AWJ20_4642
location: 126168..130211
location: region:126168-130211:1
so has part: feature:126168-130211:1:exon

XP_018736176.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:126168-130211:1:exon

AWJ20_4643
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RAD1
locus tag: AWJ20_4643
so part of: sequence
location: complement(<130280..>133468)
location: region:130280-133468:-1
so has part: feature:130280-133468:-1:exon
subclass of: SO_0000010

30036798
type: Gene
SIO_000068: ncbigene

position:130280:-1
position: 130280
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:133468:-1
position: 133468
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:130280-133468:-1:exon

AWJ20_4643
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RAD1
locus tag: AWJ20_4643
product: ssDNA endodeoxyribonuclease RAD1
transcript id: XM_018881728.1
SIO_010081: AWJ20_4643
subclass of: SO_0000673
so part of: AWJ20_4643
location: complement(<130280..>133468)
location: region:130280-133468:-1
so has part: feature:130280-133468:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:130280-133468:-1:exon

AWJ20_4643
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RAD1
locus tag: AWJ20_4643
inference: similar to AA sequence:KEGG_Orthology:K10848
codon start: 1
product: ssDNA endodeoxyribonuclease RAD1
translation: MSEFEEDDENDLFVRQENDFYQSQSLIEAVENERNGTTVEGYTYDGTNLSQAETPSHESKGPTNGLKTTTTTSGNHIITLHETEHESATLRDDIYNSEELFKSVVLSTPLSFQKTIIRDMLADDALLVLGRGLGLHLIAANILHALDVAGTTTAKSIADESTIENGTRQSRSSLVLLIGTNDIENSRISQELWQLSQLADPLTSCHRGLTIVSNETTTLNQREKLYKRGGIFSVRYQALVVDMLSGAIDCSKVTGIVAFDSDRRVDKHYLEWVIRLYRSKNTRGFIKALTENPEGFGTSGTLQPLAAKLKNLSIKRVLLWPRYHIEVTDSLLQTGRGRKRNEIIEIQVEKSEAVRRIQTAIMDSIESCISRIKRTTASIKVISTEEWNLDNALSMKLSRQVRFELRPYWHLLSYDARHAVGDLAVLEQLLDDVLSLDSVAFLQRLIEISKSATKSTRDVSQWLLEDAGSMLFQLAKERVYGKKSKDSTRPAIIEELPKWYHLMNILEEISAEKSNSNPDETGGPVLIMCKEKRTVTQLKAYIDTVGKAKNEPQNDNESIPPGQIYMKERLQFYIDLNKMLLQKRRSCAPRGENLTGVASTGESATNTGNDSTSSNRAPFSRNKRRRVRGGSVVASAAGRSVSPSLSLPEFEETIAEDTPIDADGLDDDIMRLISQDHVEEDKDILHISEVFSRLQVMDSGQLVVIQQYDRFNDDSMLAELRPSYIIMYEPDTSFFRRIEVTRASNPDRQIKAYFMFHKESVEEQRFLSEIRREKDAFTRLIREKANMAIHLETEKDTAARLTNNSTLLRNFSTRIAGGGQLGFNTNKPRVVVDVRELKAPLPAVLDFNNVEVVPMTLTVGDYILSPEICVERKSITDFIQSMKSGRLHEQCTAMCRYYEFPAVLIEFDDLDSFSFNSVGNSGPQPRSMGTADIDRFLSENDSLRTQISLLILQHPKLSLLWSPSPNDSAEIFARLKNERDEPDPALCARIGVSGGGNSIDYNIAAIDTLLAMPGITTNNYALITRKVPNIRTLCSMSEEDISAIIGKEAAAKLYRFFNETVQ
SIO_010081: AWJ20_4643
subclass of: SO_0000673
so part of: AWJ20_4643
location: complement(130280..133468)
location: region:130280-133468:-1
so has part: feature:130280-133468:-1:exon

XP_018736177.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:130280-133468:-1:exon

AWJ20_4644
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PEX29
locus tag: AWJ20_4644
so part of: sequence
location: <134318..>136012
location: region:134318-136012:1
so has part: feature:134318-136012:1:exon
subclass of: SO_0000010

30036799
type: Gene
SIO_000068: ncbigene

position:134318:1
position: 134318
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:136012:1
position: 136012
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:134318-136012:1:exon

AWJ20_4644
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PEX29
locus tag: AWJ20_4644
product: Pex29p
transcript id: XM_018881729.1
SIO_010081: AWJ20_4644
subclass of: SO_0000673
so part of: AWJ20_4644
location: <134318..>136012
location: region:134318-136012:1
so has part: feature:134318-136012:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:134318-136012:1:exon

AWJ20_4644
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PEX29
locus tag: AWJ20_4644
note: Peroxisomal integral membrane peroxin; involved in the regulation of peroxisomal size, number and distribution; genetic interactions suggest that Pex28p and Pex29p act at steps upstream of those mediated by Pex30p, Pex31p, and Pex32p; forms ER foci upon DNA replication stress; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 12707309]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007031 - peroxisome organization [Evidence IEA]; GO_process: GO:0007031 - peroxisome organization [Evidence IDA,IGI,IMP] [PMID 12707309]
codon start: 1
product: Pex29p
translation: MVSNSQDEKPLSDTLSSLWNNFINTSPNSSQSARDDESLFKSDSDTQANAENTDIGIDMVKPEVQDDGSIGIVPATRNLGTASAVVSPVIAKTGSTEGTLLTRKGDPIESLRSLPITNNEKSNSSERPRSSLLSMASASTSNWLNPIKPEKVLEMLFESWAGSATQDLTTNRGRYQANLAPLSLPITFRNYNDFQSRCGIVYEMRYDIQAILEWKNPSGTLSYLIVYSFACLHPRLFILCPFVYLLLGIMAPAYIAVHPGPRSGSLADMHSMPFSGPPLHDPVIPKPVSQFSPEFLANVLDTQYAIGDAVKLFDKTVDWLSTFAYFTNEEWSSVIYVAILFSTAIIYFSSPFLFTYIQWRYIFLSGGWVAMGTSYLKNVGIHRNMELFLAEFKKSAMEKLPDSTDLSRYFEIKIPRLDVPRNFRFKEESELISKEVQIFEIQKFDVVESCWQQSVFWGSPYAHMKEPCESLPDGQLPNKIESVLPPMDWNFETDAWERDYDPQEWVDNHYLLQSRIFIDHDEKWVYDAEDGQKTNTYRRRRWSRVVTRTSDITPKPSTSLSKTE
SIO_010081: AWJ20_4644
subclass of: SO_0000673
so part of: AWJ20_4644
location: 134318..136012
location: region:134318-136012:1
so has part: feature:134318-136012:1:exon

XP_018736178.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:134318-136012:1:exon

AWJ20_4645
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ADE6
locus tag: AWJ20_4645
so part of: sequence
location: complement(<136122..>140093)
location: region:136122-140093:-1
so has part: feature:136122-140093:-1:exon
subclass of: SO_0000010

30036800
type: Gene
SIO_000068: ncbigene

position:136122:-1
position: 136122
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:140093:-1
position: 140093
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:136122-140093:-1:exon

AWJ20_4645
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ADE6
locus tag: AWJ20_4645
product: phosphoribosylformylglycinamidine synthase
transcript id: XM_018881730.1
SIO_010081: AWJ20_4645
subclass of: SO_0000673
so part of: AWJ20_4645
location: complement(<136122..>140093)
location: region:136122-140093:-1
so has part: feature:136122-140093:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:136122-140093:-1:exon

AWJ20_4645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ADE6
locus tag: AWJ20_4645
inference: similar to AA sequence:KEGG_Orthology:K01952
note: Formylglycinamidine-ribonucleotide (FGAM)-synthetase; catalyzes a step in the 'de novo' purine nucleotide biosynthetic pathway; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004642 - phosphoribosylformylglycinamidine synthase activity [Evidence IEA,IEA]; GO_function: GO:0004642 - phosphoribosylformylglycinamidine synthase activity [Evidence IMP] [PMID 9331966]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IC] [PMID 9331966]; GO_process: GO:0006541 - glutamine metabolic process [Evidence IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IMP] [PMID 1743513]
codon start: 1
product: phosphoribosylformylglycinamidine synthase
translation: MMLTLPGPVAYSPFRVSGLINNINTAVNSSAVIGLRTVYVHYVSVKDGSDLAKNNEKLTVLNSLLEYDSKPDVNEPLTKVLVDAITSENQQIPDNAYLLRVVPRKGTISPWSSKATNILHNCGLVDDVERVERGLALIIQVRKGFPLDEHLKSGVFLDFIYDRMTQSILERIPEKADFFATHEPKPLVSVPRNGIAAANKSLGLALDQPEIDYLTSSFPNRDPTDVELFMFAQVNSEHCRHKIFNADWKIDGEAKPYSLFKMIRNTHEKNPKYTISAYSDNASVLEGHEATYYAPDPKTKEYQQIKETVHFLTKVETHNHPTAVSPFPGAATGSGGEIRDEGAVGRGSKSKAGLSGYSVSDLLIPDFKQPWELDVGKPAHISSPLDIMLEAPIGSAAFNNEFGRPAIGGYFRTLTTSVTNAAGKQEIRGFHKPIMLAGGMGSIRPQFALKNRKITPGAALIVLGGPSMLIGLGGGAASSVSSGEGSVDLDFASVQRGNPEMQRRAQMVIDACVALDGANPIQSIHDVGAGGLSNALTELVHDNDLGARFELRDVPNVEPGMSPMEIWCCEAQERYVLGVSPSDLDTFKAICERERAIYAVVGYATSEQRLVLHDRLLDCTPIDMEMSVLFGKPPKLSRVATTRQLKLEHFETSSISIKDAADRVLKLPAVGSKSFLITIGDRSVTGLIAREQMVGPWQVPVADVAVTITSHGAGIHTGEAFGIGERPTVALINAGASAKLSVAESLLNIFASDTTLERIRLSANWMAAPAHEGEGAALYEAVQAIGLDLCPELGIAIPVGKDSMSMKMKWDKKEVTSPMSVVITAFGPVNDVRRTWTPQLERIEGSKLVLVDLGAGKNRLGGSAVAQVYGQIGNEAPDVDAKLLKSFLHALETLHKKDDLVLAYHDRSDGGLLVTALEMAFAGRVGLHLDVEDPSSDLVASLFNEELGAVFQVVDVEGFKAVLLEAGVPESVISVVGTVKSAKDQAISLRFNGQPAWEESRAALQQTWSLTSYKMQRLRDNPKAADQEFSNIADNSDPGLSFKLTFENTPIPANLLTHKPKVAILREQGVNGHVEMAYAMQQAGFTPIDVHMSDLMSKQVSLNEFVGFAACGGFSYGDVLGAGAGWAKSVLFHDNLKKEFSHFFNDRKDTFAIGVCNGCQFLSRIKSLLPGADNWPSFERNLSEQYEARTVVVEIVDDSAPGTEPSIFLNSMRGSRFPVAVAHGEGYASFDSEDHLKKFSHDNLAVVRYVDNYGKVTEKYPFNPNGSPEGITGIRTPNGRVLAMMPHPERVVIKEANSWYPKDLDFEDGPWLRLFRNARQWVN
SIO_010081: AWJ20_4645
subclass of: SO_0000673
so part of: AWJ20_4645
location: complement(136122..140093)
location: region:136122-140093:-1
so has part: feature:136122-140093:-1:exon

XP_018736179.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:136122-140093:-1:exon

AWJ20_4646
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4646
so part of: sequence
location: <140749..>141036
location: region:140749-141036:1
so has part: feature:140749-141036:1:exon
subclass of: SO_0000010

30036801
type: Gene
SIO_000068: ncbigene

position:140749:1
position: 140749
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:141036:1
position: 141036
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:140749-141036:1:exon

AWJ20_4646
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4646
product: hypothetical protein
transcript id: XM_018881731.1
SIO_010081: AWJ20_4646
subclass of: SO_0000673
so part of: AWJ20_4646
location: <140749..>141036
location: region:140749-141036:1
so has part: feature:140749-141036:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:140749-141036:1:exon

AWJ20_4646
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4646
codon start: 1
product: hypothetical protein
translation: MVQTALKKSSSLGPTKSGKVSKHSKNPKKAAPKQIAPKKRGAVEDKKIAKKHSAALTSATEKLLASRVGHLELLKGTRRELEKKEKEKKKKEAKK
SIO_010081: AWJ20_4646
subclass of: SO_0000673
so part of: AWJ20_4646
location: 140749..141036
location: region:140749-141036:1
so has part: feature:140749-141036:1:exon

XP_018736180.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:140749-141036:1:exon

AWJ20_4647
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TWF1
locus tag: AWJ20_4647
so part of: sequence
location: <142946..>143905
location: region:142946-143905:1
so has part: feature:142946-143905:1:exon
subclass of: SO_0000010

30036802
type: Gene
SIO_000068: ncbigene

position:142946:1
position: 142946
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:143905:1
position: 143905
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:142946-143905:1:exon

AWJ20_4647
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TWF1
locus tag: AWJ20_4647
product: Twf1p
transcript id: XM_018881732.1
SIO_010081: AWJ20_4647
subclass of: SO_0000673
so part of: AWJ20_4647
location: <142946..>143905
location: region:142946-143905:1
so has part: feature:142946-143905:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:142946-143905:1:exon

AWJ20_4647
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TWF1
locus tag: AWJ20_4647
inference: similar to AA sequence:KEGG_Orthology:K08870
note: Twinfilin; highly conserved actin monomer-sequestering protein involved in regulation of the cortical actin cytoskeleton; coordinates actin filament severing and monomer sequestering at sites of rapid actin turnover; composed of two cofilin-like regions, localizes actin monomers to sites of rapid filament assembly; GO_component: GO:0030479 - actin cortical patch [Evidence TAS] [PMID 10652251]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_function: GO:0003779 - actin binding [Evidence IEA,IEA]; GO_function: GO:0051015 - actin filament binding [Evidence IDA] [PMID 16569665]; GO_function: GO:0003785 - actin monomer binding [Evidence IDA] [PMID 9700161]; GO_process: GO:0044396 - actin cortical patch organization [Evidence IMP] [PMID 16569665]; GO_process: GO:0030042 - actin filament depolymerization [Evidence IDA] [PMID 16569665]; GO_process: GO:0007015 - actin filament organization [Evidence IDA,IMP] [PMID 16569665]; GO_process: GO:0051014 - actin filament severing [Evidence IDA,IMP] [PMID 16569665]; GO_process: GO:0030837 - negative regulation of actin filament polymerization [Evidence IEA]; GO_process: GO:0042989 - sequestering of actin monomers [Evidence IDA] [PMID 9700161]
codon start: 1
product: Twf1p
translation: MANLAESCEPGKVIPKQSDRFEDDFDGIQRQLNAKEANYVAVKQNGPDAKFVFISFVPDAAPVRSKMLYASSSNTIYRELGGTQRFATSLFWTDLSEVSSSGWNAHVKHEQATAPMTEEERSLQEVLHREVDQMIGTGERKNEIHRIQLSGSSRSGTGLSLAVDDAVHEAFKQLHSAEPGSALGLHVDMDRESVIVGKPLSAVHADKLGDQFIDGSKPQYTIYKHASPTGETDKIVFIYTCPSGSKIKERMVYASNRESVVSFARTHVDVIKVVEATDGSDISHTQLNDELYPESSETSSTSSTPRSGGFARPKRPGRR
SIO_010081: AWJ20_4647
subclass of: SO_0000673
so part of: AWJ20_4647
location: 142946..143905
location: region:142946-143905:1
so has part: feature:142946-143905:1:exon

XP_018736181.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:142946-143905:1:exon

AWJ20_4648
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SFC1
locus tag: AWJ20_4648
so part of: sequence
location: complement(<144144..>144980)
location: region:144144-144980:-1
so has part: feature:144144-144980:-1:exon
subclass of: SO_0000010

30036803
type: Gene
SIO_000068: ncbigene

position:144144:-1
position: 144144
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:144980:-1
position: 144980
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:144144-144980:-1:exon

AWJ20_4648
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SFC1
locus tag: AWJ20_4648
product: Sfc1p
transcript id: XM_018881733.1
SIO_010081: AWJ20_4648
subclass of: SO_0000673
so part of: AWJ20_4648
location: complement(<144144..>144980)
location: region:144144-144980:-1
so has part: feature:144144-144980:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:144144-144980:-1:exon

AWJ20_4648
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SFC1
locus tag: AWJ20_4648
inference: similar to AA sequence:KEGG_Orthology:K15100
note: Mitochondrial succinate-fumarate transporter; transports succinate into and fumarate out of the mitochondrion; required for ethanol and acetate utilization; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence ISS] [PMID 7908717]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005469 - succinate:fumarate antiporter activity [Evidence IDA] [PMID 9395087]; GO_process: GO:0015741 - fumarate transport [Evidence IDA] [PMID 9395087]; GO_process: GO:0015744 - succinate transport [Evidence IDA] [PMID 9395087]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Sfc1p
translation: MQLKRREVGPDGKKVKPVGFIRTGIRIVQKETPLGLYKGLGAVIAGITPKMAIRFSTYEYLKEKLTPVDKPISTLNTFVAGVGAGLTEAVLIVNPTEVVKIRLQAQAHSLVDPVTGPKYRNAAHCVYTVIREEGIGAMYRGVVLTAARQASNQGVNFTVYSGLKAKLQELQPEYQMLPSWQTSIIGLISGALGPLSNAPLDTIKTRMQREGGHSTESGLARFTRIAKQLIQQEGTAALYRGITPRIMRVAPGQAVTFTIYEMARGQLNKIPIFNQTPA
SIO_010081: AWJ20_4648
subclass of: SO_0000673
so part of: AWJ20_4648
location: complement(144144..144980)
location: region:144144-144980:-1
so has part: feature:144144-144980:-1:exon

XP_018736182.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:144144-144980:-1:exon

AWJ20_4649
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RSC9
locus tag: AWJ20_4649
so part of: sequence
location: <150734..>152857
location: region:150734-152857:1
so has part: feature:150734-152857:1:exon
subclass of: SO_0000010

30036804
type: Gene
SIO_000068: ncbigene

position:150734:1
position: 150734
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:152857:1
position: 152857
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:150734-152857:1:exon

AWJ20_4649
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RSC9
locus tag: AWJ20_4649
product: Rsc9p
transcript id: XM_018881734.1
SIO_010081: AWJ20_4649
subclass of: SO_0000673
so part of: AWJ20_4649
location: <150734..>152857
location: region:150734-152857:1
so has part: feature:150734-152857:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:150734-152857:1:exon

AWJ20_4649
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RSC9
locus tag: AWJ20_4649
inference: similar to AA sequence:KEGG_Orthology:K11763
note: Component of the RSC chromatin remodeling complex; DNA-binding protein involved in the synthesis of rRNA and in transcriptional repression and activation of genes regulated by the Target of Rapamycin (TOR) pathway; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 10619019]; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 11931764]; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 12183366]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 12183366]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 16455496]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17918861]; GO_function: GO:0003682 - chromatin binding [Evidence IPI] [PMID 11931764]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IDA,IDA] [PMID 12183366]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IMP] [PMID 17542652]; GO_process: GO:0070301 - cellular response to hydrogen peroxide [Evidence IDA] [PMID 11931764]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IPI] [PMID 11931764]; GO_process: GO:0006337 - nucleosome disassembly [Evidence IDA] [PMID 16492771]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0009303 - rRNA transcription [Evidence IMP] [PMID 11931764]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11931764]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 17081996]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0061587 -…
codon start: 1
product: Rsc9p
translation: MSSPGGRVLRHHQTRPNYGSSSTPNTRISGISGPSKTPGGISTPGTNNIPVHVRGGTVMSGLTVSNGLTPSTPGTPGTPSPSTPGLLGSAHSVTPQPTGDVPAHMIPPASMAVYTPQNAPHLYQSTVYQRINPSQQPYIGMGMRGVDFIVRISMSLQCGIEDEVSWALKALLELSVRQPGLIQFKNNTSIPLLLFDKIARSSIFAAPVSSTILNDSTSAPGPGLDSEVDSFTPSNTADDLQVGISSDIGGNTTVTTGNGPESSTDSAPITVPDLNSPFYGSADSDFFQLHKTIEALLILRNASLDPENAHFLANSPFCNEIVLRGLQFMIAGNDPKRPNSTTSSNPAVAEISSYCIDIAESISFHMTPDSPSNPLFATICKIISASTDRSTLIPTIRCLSRLMIRDDKNIVGSVPLPIVSSILRYLLVTDDEELMSASLDFLYQYTARRENVSRLINISDVENGVNNKDAHLNLEIVTTHLSRLLTYKIEPQPVADYIRLPRKTKEPVPTEPPKLPAWILKELYAMEEPDRATHWIRTCYIDDEDGEVTQISLWKAYEAQFETFARESGRRLLPAVDFIKNVTSAFRTSSAMVVQLPGGQKKFIIKGIRPREYPIAPSVLNAPKQPDPKPTDQANSIVREPSAVCVTSALVLQNIARSPAGRTLLRPRVEEFIGSYTVNLALGSYIDGLLDIVSRSGEHDLDDEDHK
SIO_010081: AWJ20_4649
subclass of: SO_0000673
so part of: AWJ20_4649
location: 150734..152857
location: region:150734-152857:1
so has part: feature:150734-152857:1:exon

XP_018736183.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:150734-152857:1:exon

AWJ20_4650
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4650
so part of: sequence
location: <155378..>155926
location: region:155378-155926:1
so has part: feature:155378-155926:1:exon
subclass of: SO_0000010

30036806
type: Gene
SIO_000068: ncbigene

position:155378:1
position: 155378
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:155926:1
position: 155926
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:155378-155926:1:exon

AWJ20_4650
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4650
product: hypothetical protein
transcript id: XM_018881736.1
SIO_010081: AWJ20_4650
subclass of: SO_0000673
so part of: AWJ20_4650
location: <155378..>155926
location: region:155378-155926:1
so has part: feature:155378-155926:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:155378-155926:1:exon

AWJ20_4650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4650
codon start: 1
product: hypothetical protein
translation: MKFSTIAIATVSAATVVNASYSYSPQVNDFLNKIDIAKAQVYDQAGSLRDDLIDSWSDSQLKEWLDAHSLYDVHTSATKDVKGYAASLKEQVLAHKDVLVEDIKSYQAAAAANAQPYIGKSKEFVADTGAKAGEVGAQAQVHAQTLLGHVQQHLYTQYENVKSYAWDLYKRATAYSKSKVDL
SIO_010081: AWJ20_4650
subclass of: SO_0000673
so part of: AWJ20_4650
location: 155378..155926
location: region:155378-155926:1
so has part: feature:155378-155926:1:exon

XP_018736184.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:155378-155926:1:exon

AWJ20_4651
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4651
so part of: sequence
location: complement(<158555..>159265)
location: region:158555-159265:-1
so has part: feature:158555-159265:-1:exon
subclass of: SO_0000010

30036807
type: Gene
SIO_000068: ncbigene

position:158555:-1
position: 158555
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:159265:-1
position: 159265
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:158555-159265:-1:exon

AWJ20_4651
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4651
product: hypothetical protein
transcript id: XM_018881737.1
SIO_010081: AWJ20_4651
subclass of: SO_0000673
so part of: AWJ20_4651
location: complement(<158555..>159265)
location: region:158555-159265:-1
so has part: feature:158555-159265:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:158555-159265:-1:exon

AWJ20_4651
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4651
codon start: 1
product: hypothetical protein
translation: MFESKQLNSRDLWTACALSGKLLRDPIVSDYKGRLYNKESILEYLLTPEKFGASQRAKVTYITGIKDIVELKITRESKSQTWICPLTEKDIVKESASQRFVYIAECGHLMTEKAIRQMTMVDNAKDHGNGTANGSSAESSLNHGDRDNKKEYCPVCDTEYIPVNLVTVNPSIPELVKKNEDRMKLLAELGLTHSLKPKKKKEKEKKKQKSSTEKKRKSLTTSDDVPAKKTKVPVDT
SIO_010081: AWJ20_4651
subclass of: SO_0000673
so part of: AWJ20_4651
location: complement(158555..159265)
location: region:158555-159265:-1
so has part: feature:158555-159265:-1:exon

XP_018736185.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:158555-159265:-1:exon

AWJ20_4652
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4652
so part of: sequence
location: <160555..>162177
location: region:160555-162177:1
so has part: feature:160555-162177:1:exon
subclass of: SO_0000010

30036808
type: Gene
SIO_000068: ncbigene

position:160555:1
position: 160555
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:162177:1
position: 162177
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:160555-162177:1:exon

AWJ20_4652
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4652
product: hypothetical protein
transcript id: XM_018881738.1
SIO_010081: AWJ20_4652
subclass of: SO_0000673
so part of: AWJ20_4652
location: <160555..>162177
location: region:160555-162177:1
so has part: feature:160555-162177:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:160555-162177:1:exon

AWJ20_4652
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4652
codon start: 1
product: hypothetical protein
translation: MILCQFPRLMALLLPLLALIYGETNTCPAQTCLVSSSGGKFNGICQASFSEFLGIPYAQPPTGNLRFANAVQYTPNSSPRNAKTLPPYCPQTSTTVTSTHEDCLYLNVYTPSTKASNEVLFWIHGGSFIQGGSADPVFNGSQLAQAENIVVVTVNYRLGALGFYDSPETGTNFGLTDVVMALKWVNENIASYGGKPDSVTIAGESSGATVVRTLLMTPSAKGLFSRAIIQSDPQAYSANNSTVSQDGIAPIIDQSLGCSTNSGEDLITCLRNASVSDILSAQMNVYSELTNIPGVNSVYPFGPNVNSENLPMDLTPALTSQSPIVNPVEVMIGVVKDEGLAAVSQVFGSAGMTPDIYQYALAAQLGPVGAGKILSSSLFSTDINSSTYPQGINYELQLSSIATEYEFSCPSQMTAQLYQTSSHKYTYFYQFVEGIQYPDNSGFALCSNGAVCHEDDLYLVFGTYPNPTSLSSSQTSLVKEVQTRWGSFVKNGNPNCNGYSNWTPSSGQNLNVQLLGGQGSISSIDQAQCQFLDTQLGYYW
SIO_010081: AWJ20_4652
subclass of: SO_0000673
so part of: AWJ20_4652
location: 160555..162177
location: region:160555-162177:1
so has part: feature:160555-162177:1:exon

XP_018736186.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:160555-162177:1:exon

AWJ20_4653
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RCF1
locus tag: AWJ20_4653
so part of: sequence
location: complement(<162426..>162887)
location: region:162426-162887:-1
so has part: feature:162426-162887:-1:exon
subclass of: SO_0000010

30036809
type: Gene
SIO_000068: ncbigene

position:162426:-1
position: 162426
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:162887:-1
position: 162887
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:162426-162887:-1:exon

AWJ20_4653
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RCF1
locus tag: AWJ20_4653
product: Rcf1p
transcript id: XM_018881739.1
SIO_010081: AWJ20_4653
subclass of: SO_0000673
so part of: AWJ20_4653
location: complement(<162426..>162887)
location: region:162426-162887:-1
so has part: feature:162426-162887:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:162426-162887:-1:exon

AWJ20_4653
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RCF1
locus tag: AWJ20_4653
note: Cytochrome c oxidase subunit; required for assembly of the Complex III-Complex IV supercomplex, and for assembly of Cox13p and Rcf2p into cytochrome c oxidase; similar to Rcf2p, and either Rcf1p or Rcf2p is required for late-stage assembly of the Cox12p and Cox13p subunits and for cytochrome c oxidase activity; required for growth under hypoxic conditions; member of the hypoxia induced gene family; C. elegans and human orthologs are functional in yeast; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031305 - integral component of mitochondrial inner membrane [Evidence IDA] [PMID 22310663]; GO_component: GO:0031305 - integral component of mitochondrial inner membrane [Evidence IDA] [PMID 22342701]; GO_component: GO:0031305 - integral component of mitochondrial inner membrane [Evidence IDA] [PMID 22405070]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0097249 - mitochondrial respiratory chain supercomplex [Evidence IDA] [PMID 22310663]; GO_component: GO:0097249 - mitochondrial respiratory chain supercomplex [Evidence IDA] [PMID 22342701]; GO_component: GO:0097249 - mitochondrial respiratory chain supercomplex [Evidence IDA] [PMID 22405070]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0033617 - mitochondrial respiratory chain complex IV assembly [Evidence IGI] [PMID 22310663]; GO_process: GO:0097250 - mitochondrial respiratory chain supercomplex assembly [Evidence IMP] [PMID 22342701]; GO_process: GO:0097250 - mitochondrial respiratory chain supercomplex assembly [Evidence IMP] [PMID 22405070]
codon start: 1
product: Rcf1p
translation: MSSVPPNSDYTSLTGEEDILDKLARKAKEQPVVPIGMLLTCGALYMSARALRGGNSKLANRMFYWRVGLQGFTVAALVIGGYYYGKPNRPTDRDSILRRTAKEREDIWIKELERVDEMDKERKARADAVALDKKERLRRQFEEARAASGKKDE
SIO_010081: AWJ20_4653
subclass of: SO_0000673
so part of: AWJ20_4653
location: complement(162426..162887)
location: region:162426-162887:-1
so has part: feature:162426-162887:-1:exon

XP_018736187.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:162426-162887:-1:exon

AWJ20_4654
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: GUK1
locus tag: AWJ20_4654
so part of: sequence
location: complement(<163421..>163678)
location: region:163421-163678:-1
so has part: feature:163421-163678:-1:exon
subclass of: SO_0000010

30036810
type: Gene
SIO_000068: ncbigene

position:163421:-1
position: 163421
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:163678:-1
position: 163678
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:163421-163678:-1:exon

AWJ20_4654
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: GUK1
locus tag: AWJ20_4654
product: guanylate kinase
transcript id: XM_018881740.1
SIO_010081: AWJ20_4654
subclass of: SO_0000673
so part of: AWJ20_4654
location: complement(<163421..>163678)
location: region:163421-163678:-1
so has part: feature:163421-163678:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:163421-163678:-1:exon

AWJ20_4654
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: GUK1
locus tag: AWJ20_4654
inference: similar to AA sequence:KEGG_Orthology:K00942
note: Guanylate kinase; converts GMP to GDP; required for growth and mannose outer chain elongation of cell wall N-linked glycoproteins; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004385 - guanylate kinase activity [Evidence IEA,IEA]; GO_function: GO:0004385 - guanylate kinase activity [Evidence IDA] [PMID 1334480]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0046037 - GMP metabolic process [Evidence TAS] [PMID 11035032]; GO_process: GO:0046939 - nucleotide phosphorylation [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006163 - purine nucleotide metabolic process [Evidence IEA]
codon start: 1
product: guanylate kinase
translation: MQGVKSVKKTDLNARFLFIAPPSVETLKSRLEGRGTETQESLNNRLNQALAELEYSKEPGAHDKIIVNDDLEKAYAELKAFVTSE
SIO_010081: AWJ20_4654
subclass of: SO_0000673
so part of: AWJ20_4654
location: complement(163421..163678)
location: region:163421-163678:-1
so has part: feature:163421-163678:-1:exon

XP_018736188.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:163421-163678:-1:exon

AWJ20_4655
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4655
so part of: sequence
location: <164583..>165614
location: region:164583-165614:1
so has part: feature:164583-165614:1:exon
subclass of: SO_0000010

30036811
type: Gene
SIO_000068: ncbigene

position:164583:1
position: 164583
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:165614:1
position: 165614
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:164583-165614:1:exon

AWJ20_4655
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4655
product: hypothetical protein
transcript id: XM_018881741.1
SIO_010081: AWJ20_4655
subclass of: SO_0000673
so part of: AWJ20_4655
location: <164583..>165614
location: region:164583-165614:1
so has part: feature:164583-165614:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:164583-165614:1:exon

AWJ20_4655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4655
inference: similar to AA sequence:KEGG_Orthology:K08502
codon start: 1
product: hypothetical protein
translation: MNISIPGYSETSPTYFNIQISFDRTTYHVKRRYSEFVKFVEAIEEEMGEQAPVDLPGKKWIGTKNREFLDDRRRALELFLRALAKKDEWRESLAFMDFLEVSKHAKSESSVAAKARGDWLKMESEASSLIQKALKSKQLMASGIGGPTEAAEHRRLVVLSRSKIKHLESVLSSDNSLGDGEYRRRRDIVQNLKLALRNGENTSSSPFGSNMSSGAGNGISSAFNQTSSLSGASGTGVSSPLSSRSPSRTSTPTRILGAPAPETGRTRQLNNSGLLALQKSDMEEQDRTVESLRQTIEQQKRLGLAINEELTFQNQLLDELDDETHRVNSRLNQAKRRTGNLAN
SIO_010081: AWJ20_4655
subclass of: SO_0000673
so part of: AWJ20_4655
location: 164583..165614
location: region:164583-165614:1
so has part: feature:164583-165614:1:exon

XP_018736189.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:164583-165614:1:exon

AWJ20_4656
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CSR1
locus tag: AWJ20_4656
so part of: sequence
location: <168708..>170060
location: region:168708-170060:1
so has part: feature:168708-170060:1:exon
subclass of: SO_0000010

30036812
type: Gene
SIO_000068: ncbigene

position:168708:1
position: 168708
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:170060:1
position: 170060
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:168708-170060:1:exon

AWJ20_4656
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CSR1
locus tag: AWJ20_4656
product: Csr1p
transcript id: XM_018881742.1
SIO_010081: AWJ20_4656
subclass of: SO_0000673
so part of: AWJ20_4656
location: <168708..>170060
location: region:168708-170060:1
so has part: feature:168708-170060:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:168708-170060:1:exon

AWJ20_4656
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CSR1
locus tag: AWJ20_4656
note: Phosphatidylinositol transfer protein; has a potential role in regulating lipid and fatty acid metabolism under heme-depleted conditions; interacts specifically with thioredoxin peroxidase; may have a role in oxidative stress resistance; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12869188]; GO_component: GO:0005768 - endosome [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 10848624]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 12869188]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 17803462]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0008525 - phosphatidylcholine transporter activity [Evidence IDA] [PMID 10848624]; GO_function: GO:0008526 - phosphatidylinositol transporter activity [Evidence IDA] [PMID 10848624]; GO_process: GO:0043001 - Golgi to plasma membrane protein transport [Evidence IGI] [PMID 10848624]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IGI] [PMID 16126894]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0045717 - negative regulation of fatty acid biosynthetic process [Evidence IDA,IGI,IMP] [PMID 17803462]; GO_process: GO:1901352 - negative regulation of phosphatidylglycerol biosynthetic process [Evidence IGI] [PMID 12869188]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IGI] [PMID 16262726]; GO_process: GO:0009395 - phospholipid catabolic process [Evidence IEA]; GO_process: GO:0015914 - phospholipid transport [Evidence IDA] [PMID 10848624]; GO_process: GO…
codon start: 1
product: Csr1p
translation: MSTAAKGTLPGRAGNLTTEQEHKLKEFWAQVLIYTGSAPESLATQLTSYSVTSGAAAKKKGGFFSKKDKHVDDIATQSELFRAALPKLTPETFIKAVRFMSRGDNVDDLFLRFLRARKWDVAKALEMFATTISWRVEFGVDELLRTGEEQCVKDKEDGVILQFKTGKAILRGKDKTGRPIVDVHVKLHDPKAQSERDIEKFTIFLIEASRLCLNDPNDTAAVIFDLTDFAISNMDYAAVKFIITCFERHYPECLGFLFIHNAPWVFQGIWNVIKGWIDPVVASKISFTRNHNDLVKLIDDKEIPKSMGGSRPWDFEYLPPVPGENQKLEDHETRDKILAERVNLFKELEQVTVQWISATGEQSNALEAKRSQIIAEVRKNYFLLDPYVRARSAYDRDGTLAEFKQQLHQPELEAAAQAAKTGKAPSLADEKNDQTRVKTAPAAAPAAVTA
SIO_010081: AWJ20_4656
subclass of: SO_0000673
so part of: AWJ20_4656
location: 168708..170060
location: region:168708-170060:1
so has part: feature:168708-170060:1:exon

XP_018736190.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:168708-170060:1:exon

AWJ20_4657
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4657
so part of: sequence
location: <172055..>172846
location: region:172055-172846:1
so has part: feature:172055-172846:1:exon
subclass of: SO_0000010

30036813
type: Gene
SIO_000068: ncbigene

position:172055:1
position: 172055
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:172846:1
position: 172846
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:172055-172846:1:exon

AWJ20_4657
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4657
product: hypothetical protein
transcript id: XM_018881743.1
SIO_010081: AWJ20_4657
subclass of: SO_0000673
so part of: AWJ20_4657
location: <172055..>172846
location: region:172055-172846:1
so has part: feature:172055-172846:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:172055-172846:1:exon

AWJ20_4657
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4657
codon start: 1
product: hypothetical protein
translation: MNWNIEYKPLVEQDARVFGGLDRDMVQQTLQMVVSFVDNFGLSLLELTNDDCVVQDSILSFYENLPKVCLVRITPKIVIIGYEMAARLVFSQSPFATSRVCGVIASYREICTNSKNRDDPAVSTFNSLVMDTCNILWRDNAFSESVNSDQFGLTKEFIEALDKQCQEKSLSFKALYSITNSPLFIWVSMLYLRLKEHENFAATEVYTGQITRERFQEMSKAGNWLDIEYDDFRVGLLSKLEDAGYEGINVLLYTSLKQLMDRR
SIO_010081: AWJ20_4657
subclass of: SO_0000673
so part of: AWJ20_4657
location: 172055..172846
location: region:172055-172846:1
so has part: feature:172055-172846:1:exon

XP_018736191.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:172055-172846:1:exon

AWJ20_4658
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MCH5
locus tag: AWJ20_4658
so part of: sequence
location: <174040..>174744
location: region:174040-174744:1
so has part: feature:174040-174744:1:exon
subclass of: SO_0000010

30036814
type: Gene
SIO_000068: ncbigene

position:174040:1
position: 174040
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:174744:1
position: 174744
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:174040-174744:1:exon

AWJ20_4658
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MCH5
locus tag: AWJ20_4658
product: Mch5p
transcript id: XM_018881744.1
SIO_010081: AWJ20_4658
subclass of: SO_0000673
so part of: AWJ20_4658
location: <174040..>174744
location: region:174040-174744:1
so has part: feature:174040-174744:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:174040-174744:1:exon

AWJ20_4658
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MCH5
locus tag: AWJ20_4658
note: Plasma membrane riboflavin transporter; facilitates the uptake of vitamin B2; required for FAD-dependent processes; sequence similarity to mammalian monocarboxylate permeases, however mutants are not deficient in monocarboxylate transport; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16204239]; GO_function: GO:0008028 - monocarboxylic acid transmembrane transporter activity [Evidence IGI,IMP] [PMID 11536335]; GO_function: GO:0032217 - riboflavin transporter activity [Evidence IGI] [PMID 16204239]; GO_process: GO:0032218 - riboflavin transport [Evidence IGI] [PMID 16204239]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Mch5p
translation: MSEKKNAESVMKPQCDENYADGGVGVGAQFDIDSQSVRSSGINVEVINNSGDEEKTVGDKPIPEAVPVVGPPPNGGLQAYLAVLGGFFALFNSWGLINTFGAFETYYQEDLLSHEDPSTIAWIGSIQGYFVVAAAIVFGRMVDAGYIQSLLYVGTFLLTFGMMMTSISSEFYQIFLAQGVVVGIGCCCMFVVSVSVVASYFSTRRAFFVGIVASGVSLMVVNDGVREIITRLAG
SIO_010081: AWJ20_4658
subclass of: SO_0000673
so part of: AWJ20_4658
location: 174040..174744
location: region:174040-174744:1
so has part: feature:174040-174744:1:exon

XP_018736192.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:174040-174744:1:exon

AWJ20_4659
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MCH5
locus tag: AWJ20_4659
so part of: sequence
location: <174814..>175548
location: region:174814-175548:1
so has part: feature:174814-175548:1:exon
subclass of: SO_0000010

30036815
type: Gene
SIO_000068: ncbigene

position:174814:1
position: 174814
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:175548:1
position: 175548
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:174814-175548:1:exon

AWJ20_4659
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MCH5
locus tag: AWJ20_4659
product: Mch5p
transcript id: XM_018881745.1
SIO_010081: AWJ20_4659
subclass of: SO_0000673
so part of: AWJ20_4659
location: <174814..>175548
location: region:174814-175548:1
so has part: feature:174814-175548:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:174814-175548:1:exon

AWJ20_4659
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MCH5
locus tag: AWJ20_4659
note: Plasma membrane riboflavin transporter; facilitates the uptake of vitamin B2; required for FAD-dependent processes; sequence similarity to mammalian monocarboxylate permeases, however mutants are not deficient in monocarboxylate transport; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16204239]; GO_function: GO:0008028 - monocarboxylic acid transmembrane transporter activity [Evidence IGI,IMP] [PMID 11536335]; GO_function: GO:0032217 - riboflavin transporter activity [Evidence IGI] [PMID 16204239]; GO_process: GO:0032218 - riboflavin transport [Evidence IGI] [PMID 16204239]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Mch5p
translation: MVRELITRIGFGWATRVVAFTIFGLSILPCLFLKGRLPPRKSGPLIDYASFKDIPFILYCIACFFGFMGQYIPIFFIQSYCLEIGIDSNLAFYMTSILNAGSVLGRILPNFIADKTGPLNMLLPCTVACAILAYCWDFISVKGGVIAFSVLFGFFSGTFVSLPPACIASMTAEMNMLGTRMGMAFFLCGFGILIGSPIGGALVTRDDGAFLYAAMFCAACMTLSSVFMFMTRVALSGPKVMVKC
SIO_010081: AWJ20_4659
subclass of: SO_0000673
so part of: AWJ20_4659
location: 174814..175548
location: region:174814-175548:1
so has part: feature:174814-175548:1:exon

XP_018736193.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:174814-175548:1:exon

AWJ20_4660
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PMU1
locus tag: AWJ20_4660
so part of: sequence
location: complement(<177061..>177663)
location: region:177061-177663:-1
so has part: feature:177061-177663:-1:exon
subclass of: SO_0000010

30036817
type: Gene
SIO_000068: ncbigene

position:177061:-1
position: 177061
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:177663:-1
position: 177663
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:177061-177663:-1:exon

AWJ20_4660
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PMU1
locus tag: AWJ20_4660
product: Pmu1p
transcript id: XM_018881747.1
SIO_010081: AWJ20_4660
subclass of: SO_0000673
so part of: AWJ20_4660
location: complement(<177061..>177663)
location: region:177061-177663:-1
so has part: feature:177061-177663:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:177061-177663:-1:exon

AWJ20_4660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PMU1
locus tag: AWJ20_4660
note: Putative phosphomutase; contains a region homologous to the active site of phosphomutases; overexpression suppresses the histidine auxotrophy of an ade3 ade16 ade17 triple mutant and the temperature sensitivity of a tps2 mutant; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]
codon start: 1
product: Pmu1p
translation: MAQDYWSLLNGDGKIVWGPDAELTPLGIQQAKDNHTAWKEQISKKIRLPQAYYSSPFTRSLDTMLYTWKGISLDFDNALRPLVMEDLREDIGVHTCDKRRTRSFIEGRFGSIVDIEPQLTEEDELWSTQHRETHSEHDARSRDFLNYVFDLDWKSETPVDYVSVTSHSGTTNSLLSVIGHRRFQLGTGGMIPVIVRAQKL
SIO_010081: AWJ20_4660
subclass of: SO_0000673
so part of: AWJ20_4660
location: complement(177061..177663)
location: region:177061-177663:-1
so has part: feature:177061-177663:-1:exon

XP_018736194.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:177061-177663:-1:exon

AWJ20_4662
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: HSP30
locus tag: AWJ20_4662
so part of: sequence
location: <181907..>182890
location: region:181907-182890:1
so has part: feature:181907-182890:1:exon
subclass of: SO_0000010

30036818
type: Gene
SIO_000068: ncbigene

position:181907:1
position: 181907
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:182890:1
position: 182890
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:181907-182890:1:exon

AWJ20_4662
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: HSP30
locus tag: AWJ20_4662
product: Hsp30p
transcript id: XM_018881748.1
SIO_010081: AWJ20_4662
subclass of: SO_0000673
so part of: AWJ20_4662
location: <181907..>182890
location: region:181907-182890:1
so has part: feature:181907-182890:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:181907-182890:1:exon

AWJ20_4662
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: HSP30
locus tag: AWJ20_4662
note: Negative regulator of the H(+)-ATPase Pma1p; stress-responsive protein; hydrophobic plasma membrane localized; induced by heat shock, ethanol treatment, weak organic acid, glucose limitation, and entry into stationary phase; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 1535043]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 8319300]; GO_function: GO:0005216 - ion channel activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEP] [PMID 10206703]; GO_process: GO:0071361 - cellular response to ethanol [Evidence IEP] [PMID 10206703]; GO_process: GO:0034605 - cellular response to heat [Evidence IEP] [PMID 10206703]; GO_process: GO:0070301 - cellular response to hydrogen peroxide [Evidence IEP] [PMID 10206703]; GO_process: GO:0071470 - cellular response to osmotic stress [Evidence IEP] [PMID 10206703]; GO_process: GO:0034220 - ion transmembrane transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0032780 - negative regulation of ATPase activity [Evidence IMP] [PMID 9250391]; GO_process: GO:0006950 - response to stress [Evidence IEA]
codon start: 1
product: Hsp30p
translation: MSILVPRGNEALKLNPPFGLDIHITTHGSDWYWTVFSLFALASLGGLVFSRIGPQTGSKFFYYNYMFSTFVLSIAYYTMASDLGWTGIQAEFNHATVDDGGLVPGIRQIFYTRYVGWFLAFPPLVANFAVLSALPISTSFFTVLTVEVFVVSLLIGSLIHSTYKWGYFVFAVVSILLTAYNLFFSFRRAATSNVSHITGAVKTVTFGVSAVAGLMFLYPLSWGLSEGGNVIQPDSEAVFYGVIDICMFIAVPTFFIFTTSTIEAESLGLRNFNTPLFHSDNLAAEKEARYSGDTAVSNFAPTQPAAGTEPVSVPEPVATNPAAANAV
SIO_010081: AWJ20_4662
subclass of: SO_0000673
so part of: AWJ20_4662
location: 181907..182890
location: region:181907-182890:1
so has part: feature:181907-182890:1:exon

XP_018736195.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:181907-182890:1:exon

AWJ20_4663
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: NTG2
locus tag: AWJ20_4663
so part of: sequence
location: complement(<183038..>184132)
location: region:183038-184132:-1
so has part: feature:183038-184132:-1:exon
subclass of: SO_0000010

30036819
type: Gene
SIO_000068: ncbigene

position:183038:-1
position: 183038
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:184132:-1
position: 184132
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:183038-184132:-1:exon

AWJ20_4663
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: NTG2
locus tag: AWJ20_4663
product: bifunctional N-glycosylase/AP lyase NTG2
transcript id: XM_018881749.1
SIO_010081: AWJ20_4663
subclass of: SO_0000673
so part of: AWJ20_4663
location: complement(<183038..>184132)
location: region:183038-184132:-1
so has part: feature:183038-184132:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:183038-184132:-1:exon

AWJ20_4663
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: NTG2
locus tag: AWJ20_4663
inference: similar to AA sequence:KEGG_Orthology:K10773
note: DNA N-glycosylase and apurinic/apyrimidinic (AP) lyase; involved in base excision repair, localizes to the nucleus; sumoylated; NTG2 has a paralog, NTG1, that arose from the whole genome duplication; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10471279]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19029246]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic site) lyase activity [Evidence IEA]; GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic site) lyase activity [Evidence IDA] [PMID 14500818]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000703 - oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity [Evidence IDA,ISS] [PMID 9020769]; GO_process: GO:0000737 - DNA catabolic process, endonucleolytic [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006284 - base-excision repair [Evidence IEA]; GO_process: GO:0006284 - base-excision repair [Evidence IDA] [PMID 14500818]; GO_process: GO:0006285 - base-excision repair, AP site formation [Evidence IDA] [PMID 9826748]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]
codon start: 1
product: bifunctional N-glycosylase/AP lyase NTG2
translation: MPPRLRSRGLPASTVERASKRVKKEVAVKKETELTDGQLIKSENDGSTEVSTKSTVVVKTASEIEDGTLVTSVKSESSEILDKKSFVPPTLNYDPFKIIDISKIKSVSDKEPKNWRDIYSHVQKMRANTMAPVDTMGCERLPEAISSTITPAVHRYQLLIALMLSAQTKDEVNAQAMATLRRELSPVGGLTIDGILATQESEIDRMIFKVGFHSRKAKYIKLSTQILRDQYDNDIPKTIEDMVSLPGVGPKMAHLLMHRAWGVAEGIGVDVHVHRLANMWGWTGKNSKLLPTPERTREALESWLPKELWVDINPLLVGFGQTICIPRGRKCDLCTLAPTGLCKNVDRSKFKKVKRPIPDIEDLI
SIO_010081: AWJ20_4663
subclass of: SO_0000673
so part of: AWJ20_4663
location: complement(183038..184132)
location: region:183038-184132:-1
so has part: feature:183038-184132:-1:exon

XP_018736196.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:183038-184132:-1:exon

AWJ20_4664
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CCR4
locus tag: AWJ20_4664
so part of: sequence
location: complement(<184427..>186664)
location: region:184427-186664:-1
so has part: feature:184427-186664:-1:exon
subclass of: SO_0000010

30036820
type: Gene
SIO_000068: ncbigene

position:184427:-1
position: 184427
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:186664:-1
position: 186664
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:184427-186664:-1:exon

AWJ20_4664
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CCR4
locus tag: AWJ20_4664
product: CCR4-NOT core exoribonuclease subunit CCR4
transcript id: XM_018881750.1
SIO_010081: AWJ20_4664
subclass of: SO_0000673
so part of: AWJ20_4664
location: complement(<184427..>186664)
location: region:184427-186664:-1
so has part: feature:184427-186664:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:184427-186664:-1:exon

AWJ20_4664
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CCR4
locus tag: AWJ20_4664
inference: similar to AA sequence:KEGG_Orthology:K12603
codon start: 1
product: CCR4-NOT core exoribonuclease subunit CCR4
translation: MQQYQMTGGKDGGGGAGAGAGAVNGGAIGGAIGSALGLGNPSNSGSANNGSAAASEWMSSTHWQQQMQMAQLSRQTANSPHSYARSAAVASRTASGQNPIPLTVTELAVQLVQQNQNQTQAAKNAAAGGNAVVGRPAGGMLNPHQRKEQLEEERQRRINEDINKQFWTAIDLSGQGLTNMTPKLFNYNFLQKLYLNHNKLTSLPASVTKLGQLKVLDLSDNLLTDLPAEIGLMYTLRYLFLFDNKLQELPYALGTLFQLEVLGLDGNPLSDHTREIMAKEGTRGVIIDLRERAPVTIESPPREWLLFEEDKNNSKPRKDERTPQQLQQSRDNKDKSNSKDDKKDGSSSANESDSSSVAGTSASSVTTTTNTSANSAVSNGPPSQSDFSIMSYNTLCDRMATPQLYAYTPSWALGWNYRKERLLEEIVSIGTDIICLQEVDKISYDDLWVPKLSKLGYTALHWPKGRARTMPESEAKKVDGCAMFYKHEKIKLIERHNIDYNLLALRKDDFKKTADIYNRVMNKDNIAMINVFEQVQTGRLMIVANTHLHWDPAFKDVKLVQVALLLEELEKVVDKYTSNSTPEGAKYPKLTDGKNIPLVVCGDYNSTTDSAVYQLFAQGKIEGTHEDLEGRVYGKITDEGTTHKLGLKSAYSEIGELPFTNYTPNFVEVIDYIWYSTNSLSVGGLLGQIDPEYTKHFVAFPNPHHPSDHIPLAAQFNFKKVKDAPPKHTSTPNFGNTSYGSSRKT
SIO_010081: AWJ20_4664
subclass of: SO_0000673
so part of: AWJ20_4664
location: complement(184427..186664)
location: region:184427-186664:-1
so has part: feature:184427-186664:-1:exon

XP_018736197.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:184427-186664:-1:exon

AWJ20_4665
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TSA1
locus tag: AWJ20_4665
so part of: sequence
location: <189102..>189683
location: region:189102-189683:1
so has part: feature:189102-189683:1:exon
subclass of: SO_0000010

30036821
type: Gene
SIO_000068: ncbigene

position:189102:1
position: 189102
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:189683:1
position: 189683
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189102-189683:1:exon

AWJ20_4665
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TSA1
locus tag: AWJ20_4665
product: thioredoxin peroxidase TSA1
transcript id: XM_018881751.1
SIO_010081: AWJ20_4665
subclass of: SO_0000673
so part of: AWJ20_4665
location: <189102..>189683
location: region:189102-189683:1
so has part: feature:189102-189683:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:189102-189683:1:exon

AWJ20_4665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TSA1
locus tag: AWJ20_4665
inference: similar to AA sequence:KEGG_Orthology:K03386
note: Thioredoxin peroxidase; acts as both a ribosome-associated and free cytoplasmic antioxidant; self-associates to form high-molecular weight chaperone complex under oxidative stress; deletion causes mutator phenotype; protein abundance increases and forms cytoplasmic foci during DNA replication stress; chaperone activity is essential for growth under zinc deficiency; required for telomere length maintenance; TSA1 has a paralog, TSA2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10681558]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8344960]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 18271751]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 18271751]; GO_function: GO:0016209 - antioxidant activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0004601 - peroxidase activity [Evidence IEA]; GO_function: GO:0051920 - peroxiredoxin activity [Evidence IEA,IEA]; GO_function: GO:0051920 - peroxiredoxin activity [Evidence IDA] [PMID 17210445]; GO_function: GO:0043022 - ribosome binding [Evidence IDA] [PMID 18271751]; GO_function: GO:0008379 - thioredoxin peroxidase activity [Evidence IDA,IMP] [PMID 7961686]; GO_function: GO:0008379 - thioredoxin peroxidase activity [Evidence IDA,IMP] [PMID 9799566]; GO_function: GO:0051082 - unfolded protein binding [Evidence IMP] [PMID 16251355]; GO_process: GO:0000077 - DNA damage checkpoint [Evidence IGI] [PMID 19851444]; GO_process: GO:0042262 - DNA protection [Evidence IMP] [PMID 19543365]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IDA,IMP] [PMID 8344960]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IMP] [PMID 9799566]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 15051715]; GO_process: GO:0034…
codon start: 1
product: thioredoxin peroxidase TSA1
translation: MVATVRHPAPAFTKKAVVNGVFEDVSLEQYKGKWVILAFIPLAFTFVCPTEIIAYSDAVKEFADRDAVVLFASTDSEFSLLAWDNVSKKDGGLGNVKIPLVADTNHSLSRDYGVLVEEEGIALRGIFLIDPNQVVRQITINDTPVGRSVPETLRLLDAFQFTEKHGEVCPANWQKGDATIDTSKASEYFQKQA
SIO_010081: AWJ20_4665
subclass of: SO_0000673
so part of: AWJ20_4665
location: 189102..189683
location: region:189102-189683:1
so has part: feature:189102-189683:1:exon

XP_018736198.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:189102-189683:1:exon

AWJ20_4666
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: VAC7
locus tag: AWJ20_4666
so part of: sequence
location: complement(<189995..>193624)
location: region:189995-193624:-1
so has part: feature:189995-193624:-1:exon
subclass of: SO_0000010

30036822
type: Gene
SIO_000068: ncbigene

position:189995:-1
position: 189995
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:193624:-1
position: 193624
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189995-193624:-1:exon

AWJ20_4666
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: VAC7
locus tag: AWJ20_4666
product: Vac7p
transcript id: XM_018881752.1
SIO_010081: AWJ20_4666
subclass of: SO_0000673
so part of: AWJ20_4666
location: complement(<189995..>193624)
location: region:189995-193624:-1
so has part: feature:189995-193624:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:189995-193624:-1:exon

AWJ20_4666
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: VAC7
locus tag: AWJ20_4666
note: Integral vacuolar membrane protein; involved in vacuole inheritance and morphology; activates Fab1p kinase activity under basal conditions and also after hyperosmotic shock; GO_component: GO:0070772 - PAS complex [Evidence IDA,IPI] [PMID 19037259]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 9372916]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 9372916]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IDA] [PMID 19037259]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0033674 - positive regulation of kinase activity [Evidence IGI] [PMID 11950935]; GO_process: GO:0010513 - positive regulation of phosphatidylinositol biosynthetic process [Evidence IGI] [PMID 11950935]
codon start: 1
product: Vac7p
translation: MSSSRQPPARAAGKGGTPSGTRPVAPSPRRVSITSSEDLSYSTSEELDESDDYFSYQKGKSIASGGAGAAGGSAGSGISSRASTASYSGVNPSGRSPYQFPPPSKQLLRQNHRPNYGSNYGSGYGSGYGYSYHNDREGEGDGENEDYDDGDVEEYDDEDDRAGHGTIKANMLPSHSIGADTSSSSDNNSSSARFKGKIKHSSSNSSSTIKRDKSSNTLKSGSSSQSSPSKRYSRSSRHKKQLSNGTIRASDSGTQQDAKNDDNDTTADDNDGDTTISNLRISKDKQKNVDDKDGETTVHDKNTTGTAASSGTGASGKTKGGSANPSVNTSSLTSGTTNTASAASTAPSTASTATTTTTTDSSILASSGDLPSSKSGKEQTGSASTENNSAVASRTGDNKIGSGPATATILPSSTSAPNIPVAMAMSGASVTAPPTSTITGAGSGLGINSGITPSSVNLPAKASGSAASIKKPNTMTVEAETVEAVPTIAVAPTIAGSGSLKVKKSTDNVMKPINRTKKKKSSRLGQGSKAEIFAAKIASAVDEVHSSDSDETFVYESNPPDRSDSQRQHHQPLSSSQQSAVPSRPRFQSRNPSTSSLPFTGSQQQLQLQQLQQQIQAQQQQIHQNYREQTQHQLLQQQYQEQQQQQQHSQTLQQQLPQQTQQSQQQTQPTQQTQQLTGQTQPGTSQPTTTGAPSLQQTALGLAISSVPGSSSTQGSSVEPSGNVAQMNRWVVSKHKRTSGDTPMSSSSSITNVPVLESNSGGATGTTGGSTSGGTTAGGSGSVGAGTFLIARDRDTRSNGSSKRSRGAGGSSRAESPRPEDFESPKFYTHSGPSHSPLPRKLTANRHYDSTASYKAKDATLRRWRGGGSYMAEEDDDYDDQPEQDDMDDDIEYLNVSETTPLRSSGHSIRRSRKAGSLVAYSPHNYQHGKSWSQFYYFRIMFWAAVFGVCVLATGFILGFLLATSKPLQETRVSQIFDVLVSDEVLAFEVVIEAYNPGYLGIEVQNVNLDLFAKSKHVTDLQRETTTSTKPDDDESHTMLLGNVQKFDVPLIFEGGIFSKRLQKAVGDVKLVNPGRNTTGDDLVKESLAVLPPSPSMWQLLQQALKEQNGELDEGQKKWSRVNVHSFDLILRGSLKYKLLFGRERSVSIAKVSPPPSVPPAAGAPPQTPLLLSLRSSRHVHGPCLLRSRSNQGLGRSPSRRRQSPSRQN
SIO_010081: AWJ20_4666
subclass of: SO_0000673
so part of: AWJ20_4666
location: complement(189995..193624)
location: region:189995-193624:-1
so has part: feature:189995-193624:-1:exon

XP_018736199.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:189995-193624:-1:exon

AWJ20_4667
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SWE1
locus tag: AWJ20_4667
so part of: sequence
location: <195708..>198686
location: region:195708-198686:1
so has part: feature:195708-198686:1:exon
subclass of: SO_0000010

30036823
type: Gene
SIO_000068: ncbigene

position:195708:1
position: 195708
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:198686:1
position: 198686
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:195708-198686:1:exon

AWJ20_4667
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SWE1
locus tag: AWJ20_4667
product: tyrosine protein kinase SWE1
transcript id: XM_018881753.1
SIO_010081: AWJ20_4667
subclass of: SO_0000673
so part of: AWJ20_4667
location: <195708..>198686
location: region:195708-198686:1
so has part: feature:195708-198686:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:195708-198686:1:exon

AWJ20_4667
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SWE1
locus tag: AWJ20_4667
inference: similar to AA sequence:KEGG_Orthology:K03114
codon start: 1
product: tyrosine protein kinase SWE1
translation: MNSNSVTPAPNMSPLRHHHGHGHSHGHSTSNSSQNQSHSMASNHDLAAPVPFRKTLRRSTRLLNLEQAAGRRDSDGDMIDVDDDVSIDIGGLSGLGLSGLANDGDSDMNTTNANDNSGSNGQLGINGLDIGSSGHHSMVSGRTVGPASSSSDSGSLVASSSSFSLKRPHPSSSDMRSPSSSFPKPRFLSRNAFDSESNHSHGHKSIGPTISGSASTPTPSSSNGGSSNSSQFLPSLWSSSLKRRDSFDQLFAPSSPFAINGQSTPSHSNSHSGNSTTTTSNNINPGNNANTSFNFQTNNPYTTSPSPSPIPASKSHHIHIQHQASASSTASQHHNPLEPTTHHSPHSPHSPHHSPHHSPHRSPHHLPLPRPPLPRHAPPQMHRPKPKFNPSVTAEFSDYHTHTPENYRSVKPLQTAFMSTGLLSKRNRMNNSNSQADGLRMPPDTPCKRPSNMSLPLINHHNTSMFGSAPTAYSPHVSNIGGGFGTTSSGRRRSNLGLHDSLLRFSVDFGNTSTQVAEADSPMHDHDDMIDHQPPETPTKETSGHDMSSFLSSHLAKYSGDTSVSSTVSTSLTAGDTSGTIETANTTVDLSGSHPNLTFSAYSLADRGNHGNSFSSYPTPLPMNIPNRAQSQAGSTGSELGSGGASSGSDKVISTTPQSRNSRWTDGSSSEDTLSSPRTPDVIMHSDPSTIIGGSTNNSTSTVTTTSGHTSIPMIRRTTSTTSLIQEPPRTPAKTPKTPIDPLMNSSNFISLRKSSVDVDDPVLNERFDRVSLIGRGEFSIVYSLSIRGDDSPTDPTSPAIPHTLAHDNRYAVKRTRFPFMGPKARSRRLEEVEILRALTAPSRHSHPDDEHDPADDGRDYVLMLLDAWEANGYLYIMTEFCENGSLDTFLSERGNISRLDEWRVWKILLEIALVSSLSTHTCLRRLGLRPRPWLLLSLRSSRCVDGPGLLRSRSSQGLGRSPSRRRQTTGKSSNSVGIALYPRSWVFAFGY
SIO_010081: AWJ20_4667
subclass of: SO_0000673
so part of: AWJ20_4667
location: 195708..198686
location: region:195708-198686:1
so has part: feature:195708-198686:1:exon

XP_018736200.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:195708-198686:1:exon

AWJ20_4668
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SWE1
locus tag: AWJ20_4668
so part of: sequence
location: <198718..>199479
location: region:198718-199479:1
so has part: feature:198718-199479:1:exon
subclass of: SO_0000010

30036824
type: Gene
SIO_000068: ncbigene

position:198718:1
position: 198718
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:199479:1
position: 199479
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:198718-199479:1:exon

AWJ20_4668
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SWE1
locus tag: AWJ20_4668
product: tyrosine protein kinase SWE1
transcript id: XM_018881754.1
SIO_010081: AWJ20_4668
subclass of: SO_0000673
so part of: AWJ20_4668
location: <198718..>199479
location: region:198718-199479:1
so has part: feature:198718-199479:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:198718-199479:1:exon

AWJ20_4668
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SWE1
locus tag: AWJ20_4668
inference: similar to AA sequence:KEGG_Orthology:K03114
codon start: 1
product: tyrosine protein kinase SWE1
translation: MLKIGDFGMATAYPAVKGIEREGDREYIAPEVLSSQQYDKPADVFSLGIMMLEIAANIVLPDNGIHWQKLRSGDLTDAGRLSSGDLRRANEYGDDEDDECDDDNCDDDSEHVRLSLDNDSRTSLEDETTSPRMPPSQFSDIHMSSHNSGASNRKVPRRLSAIPPWAPKFMVDKSGALDVMVKWLLNPDPHSRPTTHEILISEECQWVEAHRRAGAVIYEGDYGPEPDPVGSAEDHARQMLRPDHTQDNWRRGV
SIO_010081: AWJ20_4668
subclass of: SO_0000673
so part of: AWJ20_4668
location: 198718..199479
location: region:198718-199479:1
so has part: feature:198718-199479:1:exon

XP_018736201.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:198718-199479:1:exon

AWJ20_4669
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SYP1
locus tag: AWJ20_4669
so part of: sequence
location: <202093..>205500
location: region:202093-205500:1
so has part: feature:202093-205500:1:exon
subclass of: SO_0000010

30036825
type: Gene
SIO_000068: ncbigene

position:202093:1
position: 202093
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:205500:1
position: 205500
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:202093-205500:1:exon

AWJ20_4669
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SYP1
locus tag: AWJ20_4669
product: Syp1p
transcript id: XM_018881755.1
SIO_010081: AWJ20_4669
subclass of: SO_0000673
so part of: AWJ20_4669
location: <202093..>205500
location: region:202093-205500:1
so has part: feature:202093-205500:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:202093-205500:1:exon

AWJ20_4669
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SYP1
locus tag: AWJ20_4669
note: Negative regulator of WASP-Arp23 complex; involved in endocytic site formation; directly inhibits Las17p stimulation of Arp23 complex-mediated actin assembly in vitro; may regulate assembly and disassembly of the septin ring; colocalizes and interacts with septin subunits; potential role in actin cytoskeletal organization; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11014808]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 11014808]; GO_component: GO:0001400 - mating projection base [Evidence IDA] [PMID 11014808]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0004857 - enzyme inhibitor activity [Evidence IDA] [PMID 19962315]; GO_process: GO:0000147 - actin cortical patch assembly [Evidence IMP] [PMID 19776351]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:0043086 - negative regulation of catalytic activity [Evidence IDA] [PMID 19962315]; GO_process: GO:0032185 - septin cytoskeleton organization [Evidence IGI,IMP,IPI] [PMID 18791237]
codon start: 1
product: Syp1p
translation: MATGRSEYSNAILPNLAPDRAVDVVRDRLNNAKLLNDEIADWLKERARIEESYASELDKLSRRGPLAHEQALGTFTSVWNELTRSARETSKASADYAKKTRTDIEAPIRSFSQKSPQWSDVRDLHDGLSGVAKNLVDGEDNLTKLRTKKSSSSKIEAAQHAVNESRNQWENQGPYVLGQFEIADEARFALLRDSLTRLETLEADKGQAIIKGSEKVLNSILSFDPIEEVRSFAAQIVAGNIGSVSSSGTAGVGGGSSGGSGLARHSQSRDSGDVDSQHFNRGGLVGNIHRPSRNTLDDSSSINSGNTPLGGSGGASKLRSKVGSIFRGGRKKKGEKEAAEIGAGLAAGAGAAAVAGRSNLGAGSRSASTASARAPGRRGTDSSDLYTPVDPSVAAARQQQQQQQQQQQQQQQQQQQQQQQQPQAQQQSSLQQPLQPQQAQDHLSGSKPQPPPSRKVNGQAQREFREEDEYEDEENQPLQNLVSGQQQPFRVNIRSDVITEEQEDANTALSNVASTLRSKPTISGRGSRGRRDIQSRLFTEIEASDLESSNAAAQDQSGPSYVGQQFFNQLQSFPGQGQGSTQVPSESQNGFSAPQHAISGTTAAGAAIGAAVGSLPVLNEVEPAIKREFEPQTQQGDSFNFNQPQPQQPQQQYQQSFADTQLQQGQQFNGHQFPDTQLQQGQQGEQYNGQQFPQEYNQQQPQYNQQQQISTSQAQIQQPVYSEQTAGSFGQQTAPQLPPINTDSSFHGDIGGDRSLGSATEPIVSPSGSAIADQRAPAGNVFAPVPTSVGQSTSLSSPGAGASPAGDLQPPMSAFRANRTNSDVQSLRSLQSSTTGGANIAALKHPDLPTGPGLVASIVEVITVDMKDGVPTKTAVGGEVSVAYNETDDAATPGTIYVKVKTKQTKLDRLVANNQIVVASSEPDTFKLDLSSPATASSLLGVRQGAKALMYTLSGDQHGYNPLVFTPIWRIEETQSSLMLNYELADTFHGSELEIHDLVISVPIEGGHAHSAQNKPVASFNKDRQRITWRFPEPVVLKKGQKEKLLCRFATDGYAHEASSGLEVRFRLTDSASSQLSQLGLEYTTKTEEDPFSDEATNTSAVSLSSHLNWVPVSVSRSLVTGKYSVHSELNVSKR
SIO_010081: AWJ20_4669
subclass of: SO_0000673
so part of: AWJ20_4669
location: 202093..205500
location: region:202093-205500:1
so has part: feature:202093-205500:1:exon

XP_018736202.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:202093-205500:1:exon

AWJ20_4670
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MAK16
locus tag: AWJ20_4670
so part of: sequence
location: complement(<205760..>206533)
location: region:205760-206533:-1
so has part: feature:205760-206533:-1:exon
subclass of: SO_0000010

30036827
type: Gene
SIO_000068: ncbigene

position:205760:-1
position: 205760
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:206533:-1
position: 206533
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:205760-206533:-1:exon

AWJ20_4670
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MAK16
locus tag: AWJ20_4670
product: ribosome biosynthesis protein MAK16
transcript id: XM_018881757.1
SIO_010081: AWJ20_4670
subclass of: SO_0000673
so part of: AWJ20_4670
location: complement(<205760..>206533)
location: region:205760-206533:-1
so has part: feature:205760-206533:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:205760-206533:-1:exon

AWJ20_4670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MAK16
locus tag: AWJ20_4670
inference: similar to AA sequence:KEGG_Orthology:K14831
codon start: 1
product: ribosome biosynthesis protein MAK16
translation: MKTAERAHTPAKLWERVKLSKQYSKALEQIDQQLIYWPNFLIHKCKQRLTRLTQVAITERRLALKENERQYVGKAPKVKRREQTRERKALVAAKLEKAIEKELLDRLKTGAYGENPLNVDEKIWKKVLNGVEKEEGVEQEEEFDEDEELEDESDVGEVEFVEGDDDEDDIVELEDLEKWLGGSDDDGEQRFDSSEDESSSDEESEDDEDEQETKTRKRKPTPAKKPKSDKKKPRRGPRVEIEYEQERESNLQTNVNW
SIO_010081: AWJ20_4670
subclass of: SO_0000673
so part of: AWJ20_4670
location: complement(205760..206533)
location: region:205760-206533:-1
so has part: feature:205760-206533:-1:exon

XP_018736203.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:205760-206533:-1:exon

AWJ20_4671
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4671
so part of: sequence
location: <208769..>211453
location: region:208769-211453:1
so has part: feature:208769-211453:1:exon
subclass of: SO_0000010

30036828
type: Gene
SIO_000068: ncbigene

position:208769:1
position: 208769
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:211453:1
position: 211453
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:208769-211453:1:exon

AWJ20_4671
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4671
product: hypothetical protein
transcript id: XM_018881758.1
SIO_010081: AWJ20_4671
subclass of: SO_0000673
so part of: AWJ20_4671
location: <208769..>211453
location: region:208769-211453:1
so has part: feature:208769-211453:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:208769-211453:1:exon

AWJ20_4671
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4671
codon start: 1
product: hypothetical protein
translation: MFAPRIFEESDQSISVADRSMFESRNADDMTNNNASPASGLRRSHTVSGSPSRTTYGSRWGDNSRKKVVAGTRYFSGDKSVELNAQSSAKRSGISGGANNETIEATRREILQSLERSPLKLYPDQHTDSQFPTEETRSLSKNRKLATSENKENGGQFVVPAAAAPAEDDDLTNFSKYDIRNISYQSVSRASPKRPQDSNKSIGNIGLRSRSKQPLPTDDSQRHHFADNEDRREPGELFERRTFSEEHHNAEDEREYARSQQSVREADNILESTDRRQVRNRSREEVGDPTPEIASYRDHEPVHSNFLREEVLQQENDFSRKPTREPIRQTIREPIHEPIREPVREQLHDFGRELTREPIRDPIREQENASGRELTREPVHKPVREPVRESIRESVPESVRDLTRNRRFEVDGEVSYRVDTQVRSDSQARGYRQELLHESAGTSVREHTEESSEREQLTREPVRNLGQDQQRENPRMYEQDAPPRQQTRNDYQSGTSYRARDRRQSMYTDRANQTVNHDSTYHARSAQTGLSPNATGTSRKEPNMGNMTISGIPSPKKIKQPVLARSKSQSRIRGPPSPTKGPYDPETNPPALKKRSVSDDRKKRQSIAILPPERERERELDRDRERERANRRQSVVPRMVGTTTTAGSTTNYHPTTATTTATSGTTTNRQMAFGRTPGRLLAPKSTAELRANINAGINNNAGGSGTKTASGVSGTTNNHNSTQAQTKTNSTSQTQQKNKDEISILEVDSTKPSEQSSQQLRIEMERKLAQHRTEIVSLKARLSGKDSEIKSLKASVEQSELTIESEARQREEMVARVAKELHVQYNKKHEAKLAQFKQSVKIKEETLTSEIHMLRAEVENLKTRIAVERDEKAELVNAFEAYQVELERMGIRLG
SIO_010081: AWJ20_4671
subclass of: SO_0000673
so part of: AWJ20_4671
location: 208769..211453
location: region:208769-211453:1
so has part: feature:208769-211453:1:exon

XP_018736204.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:208769-211453:1:exon

AWJ20_4672
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: BEM3
locus tag: AWJ20_4672
so part of: sequence
location: <212643..>217349
location: region:212643-217349:1
so has part: feature:212643-217349:1:exon
subclass of: SO_0000010

30036829
type: Gene
SIO_000068: ncbigene

position:212643:1
position: 212643
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:217349:1
position: 217349
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:212643-217349:1:exon

AWJ20_4672
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: BEM3
locus tag: AWJ20_4672
product: Bem3p
transcript id: XM_018881759.1
SIO_010081: AWJ20_4672
subclass of: SO_0000673
so part of: AWJ20_4672
location: <212643..>217349
location: region:212643-217349:1
so has part: feature:212643-217349:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:212643-217349:1:exon

AWJ20_4672
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: BEM3
locus tag: AWJ20_4672
note: Rho GTPase activating protein (RhoGAP); involved in control of the cytoskeleton organization; targets the essential Rho-GTPase Cdc42p, which controls establishment and maintenance of cell polarity, including bud-site assembly; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 17914457]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 17914457]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17914457]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 17914457]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 17914457]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IDA] [PMID 12455995]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IGI,IPI] [PMID 7498791]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IDA] [PMID 8227021]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IDA] [PMID 8300560]; GO_function: GO:0035091 - phosphatidylinositol binding [Evidence IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 11557775]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IMP] [PMID 8013906]; GO_process: GO:0035024 - negative regulation of Rho protein signal transduction [Evidence IGI,IMP,IPI] [PMID 17914457]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0031106 - septin ring organization [Evidence IGI] [PMID 14517318]; GO_process: GO:0007165 - signal transduction [Evidence IEA]
codon start: 1
product: Bem3p
translation: MASRISSHLPSNPLGEPYNSPSSISVADSASGDGHSEITHGSNGLGAGAAGGPYGGSSGPVASSVTTDAASGADVSIVPGESIEGRGLTMSRSSSNYSLNGRDDFNGDDDEDDDYENQQRNQNEHQLKNQNQTEIHNQNESQRENESQGYNNYNNENDDPSTRIHRGRSDVKSEHGPESAPGYLPPNEPTTNTHEPLDPKIPSPPAHASEAGTTGSGATPQPPEADPPSTKPQSKPRSESRSSRSRSRPTKGVSSDASWVKESGSGEAKDASKSVHEPHSQAVINQLVREKLELDLLVNEKVLQLSELQLQNSKLWKLVKRQHLTILDLQKDLDEAVDQNERLRSQTQSPVKNRSTAASASTSTIHSEEGSEDSSAGVGARSSNNDIDSVGSNSKAIINNMKTLRASLLPAESSSVIKTVAEPTTTVVGTNATPRTSVDSTSQSRARTETESTATPRTSAREAASSVDVSSPTVSESASNSSVSLNLDSTASVIYSPMQKAHKVSVERTRGRDNERALDGALSPFNDISTPRDYHLQQPLSQTQSDHQHHHQHHHQQQQQQQHQQLQRELFGSPTREEHQQQPNHLHVPALGTPLRDTLGTPLRDRLTSPSRNATYEPLLNSGINLPQVLQPGPPLESLGPPLFQSTTSTSSASETFAPSVSITDDVSGRASALGLGASSGNVSDEPADNPANDSTSTSDREYLVLPARSKSRPPIGERLARANTPPVAGDSLSVETTNHHLAEPTTPTPASSSGTSGSANSSAKRRPPPLLFNNNDKYGLNDTTAVRALSPEAPLTSQLPRSAPATSNSTSSTAGAYSSTAPSTTPGTASSTSSASSAGKSPFGALDISLITIEVKNTLFGKPESKNASKDDPVAILNCIDRETGAVLFKIVKDYTQLSNLDQSLRKFSSQYSIPPLPERNLFLSQAPIKVDLRRNQLNSYFGAIMSVPELPQEAVILLIKFLTQNVLPKTAIASANPYGSLTAGKCGFLTKRGRLTSWKSRWFVLNGSSLDYYERPESDAPIGTISVYKAKIGRPRKDADESDEGENEYRHAFLLMEWKKNGYVRHVFCAETDEDRDLWINALLELVEVVPGTSTSNNNNNSNGSAGESLASSVSTSTLGTAVNAASNPNAYKPMSPRSVKSDEGDYSNMSSVTVLSPPPSSSIGMNYDGHHGSNSSVSSNGGTTNTAAGGSFPKTPISGPLSFQKILDPGSWNSPNRNNNNNSDINHGHYVGGSGAGSGSHHVSHGSHGSNNVHSFGSESDETKRKERKKYLSIFKKGGHSPMSSNTSAHSVNAAFPNGFPSMNSINQLQSPPPPPPPPPPPPPPPLNLSGTRSPGSATFGDDNYYNDSIDTSMDHHGAHRQYRGTVFATPLPQAIAISSKNVNGCIVPSILYRCIELLERKGAIYEEGLFRLSGSDSAIRGLKERFNSEYDVDLIAAGADIHAVSGLLKRYLREISEPVIPPLTELQFRTEMESDDAYVRSTAAKNLVSVLPRENYDLLCVLYSFLRKIVDNMNLNKMNLNNLSIVFSPTLHITTNVFSTLFENYSAIFKGFQSDITDPAANVL
SIO_010081: AWJ20_4672
subclass of: SO_0000673
so part of: AWJ20_4672
location: 212643..217349
location: region:212643-217349:1
so has part: feature:212643-217349:1:exon

XP_018736205.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:212643-217349:1:exon

AWJ20_4673
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: LIP5
locus tag: AWJ20_4673
so part of: sequence
location: complement(<217620..>218831)
location: region:217620-218831:-1
so has part: feature:217620-218831:-1:exon
subclass of: SO_0000010

30036830
type: Gene
SIO_000068: ncbigene

position:217620:-1
position: 217620
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:218831:-1
position: 218831
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:217620-218831:-1:exon

AWJ20_4673
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: LIP5
locus tag: AWJ20_4673
product: putative lipoate synthase
transcript id: XM_018881760.1
SIO_010081: AWJ20_4673
subclass of: SO_0000673
so part of: AWJ20_4673
location: complement(<217620..>218831)
location: region:217620-218831:-1
so has part: feature:217620-218831:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:217620-218831:-1:exon

AWJ20_4673
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: LIP5
locus tag: AWJ20_4673
inference: similar to AA sequence:KEGG_Orthology:K03644
note: Protein involved in biosynthesis of the coenzyme lipoic acid; has similarity to E. coli lipoic acid synthase; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA,IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0016992 - lipoate synthase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0016992 - lipoate synthase activity [Evidence ISA] [PMID 8349643]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016783 - sulfurtransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009107 - lipoate biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009249 - protein lipoylation [Evidence IEA]; GO_process: GO:0009249 - protein lipoylation [Evidence IMP] [PMID 19570983]
codon start: 1
product: putative lipoate synthase
translation: MLKVTASRGSICGPLRAISSFHTSAYALLESTDSVKSGATSTAPTRSSRSTRFTDKLNKGPSFEDFLSKKAASDPTLLDPVVAARKSEDARLPKWLKTEIPKGKNFHKLKDDLRGLKLHTVCEEARCPNIGECWGGSDKSKATATIMLMGDTCTRGCRFCSVKTNRNPSPLDPNEPENTAEAIAKWGLGYVVLTTVDRDDLIDGGAYHFADTVKRIKKKASHILVECLTGDFRGDLNMVKIMATSGLDVFAHNVETVEDLTPYVRDRRATFQQSLAVLAHAKQSNPDVLTKTSVMLGFGETDAQVEDTLQQLRKADVDVVTFGQYMRPTKRHMKVAEYVTPEKFQHWHDRAMELGFKYCASGPLVRSSYKAGEAFIENMLKNKQKLAASASATTSASSATATA
SIO_010081: AWJ20_4673
subclass of: SO_0000673
so part of: AWJ20_4673
location: complement(217620..218831)
location: region:217620-218831:-1
so has part: feature:217620-218831:-1:exon

XP_018736206.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:217620-218831:-1:exon

AWJ20_4674
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4674
so part of: sequence
location: <218227..>218514
location: region:218227-218514:1
so has part: feature:218227-218514:1:exon
subclass of: SO_0000010

30036831
type: Gene
SIO_000068: ncbigene

position:218227:1
position: 218227
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:218514:1
position: 218514
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:218227-218514:1:exon

AWJ20_4674
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4674
product: hypothetical protein
transcript id: XM_018881761.1
SIO_010081: AWJ20_4674
subclass of: SO_0000673
so part of: AWJ20_4674
location: <218227..>218514
location: region:218227-218514:1
so has part: feature:218227-218514:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:218227-218514:1:exon

AWJ20_4674
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4674
codon start: 1
product: hypothetical protein
translation: MRSSLSTVVNTTYPRPHLAIASAVFSGSLGSNGEGLRLVLTEQNLHPLVQVSPINMIVAVALDLSEPPQHSPIFGHLASSQTVCSFNPRRSSFNL
SIO_010081: AWJ20_4674
subclass of: SO_0000673
so part of: AWJ20_4674
location: 218227..218514
location: region:218227-218514:1
so has part: feature:218227-218514:1:exon

XP_018736207.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:218227-218514:1:exon

AWJ20_4675
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CAR1
locus tag: AWJ20_4675
so part of: sequence
location: <222116..>223063
location: region:222116-223063:1
so has part: feature:222116-223063:1:exon
subclass of: SO_0000010

30036832
type: Gene
SIO_000068: ncbigene

position:222116:1
position: 222116
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:223063:1
position: 223063
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:222116-223063:1:exon

AWJ20_4675
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CAR1
locus tag: AWJ20_4675
product: arginase
transcript id: XM_018881762.1
SIO_010081: AWJ20_4675
subclass of: SO_0000673
so part of: AWJ20_4675
location: <222116..>223063
location: region:222116-223063:1
so has part: feature:222116-223063:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:222116-223063:1:exon

AWJ20_4675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CAR1
locus tag: AWJ20_4675
inference: similar to AA sequence:KEGG_Orthology:K01476
note: Arginase, catabolizes arginine to ornithine and urea; expression responds to both induction by arginine and nitrogen catabolite repression; disruption decreases production of carcinogen ethyl carbamate during wine fermentation and also enhances freeze tolerance; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 205532]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004053 - arginase activity [Evidence IEA,IEA]; GO_function: GO:0004053 - arginase activity [Evidence IMP] [PMID 14582193]; GO_function: GO:0004053 - arginase activity [Evidence IDA] [PMID 2404017]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016813 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines [Evidence IEA]; GO_function: GO:0030145 - manganese ion binding [Evidence IDA] [PMID 1939179]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0090369 - ornithine carbamoyltransferase inhibitor activity [Evidence IDA,IMP] [PMID 12679340]; GO_function: GO:0008270 - zinc ion binding [Evidence IDA] [PMID 1939179]; GO_process: GO:0019547 - arginine catabolic process to ornithine [Evidence IMP] [PMID 14582193]; GO_process: GO:0019547 - arginine catabolic process to ornithine [Evidence IDA] [PMID 2404017]; GO_process: GO:0006525 - arginine metabolic process [Evidence IEA,IEA]; GO_process: GO:0090368 - regulation of ornithine metabolic process [Evidence IDA,IMP] [PMID 12679340]; GO_process: GO:0000050 - urea cycle [Evidence IEA]
codon start: 1
product: arginase
translation: MTISQKSRSLTVISAPFSGGQGKPGVDDGPQHLLDMGLVEQIGRLDWTPKFAGHLQFPAVKNDTNIGHVKNPRYVSQSTKNIYEAVKKASTSSDFTLTIGGDHSIAIGTVAGVQAAHPDAIVLWIDAHADLNTPAASSSGNLHGCPVAFLLGADEPLANAASKEEADLFGWVPHCLDDSQLGYIGLRDVDAFEKQYIREHKIAAFSMHHVDKYGIASVVEQAINKLDPEHKRPIHLSFDVDAIDPVYAPSTGTPVRGGLTWREACYLCEAVAETGRLVAMDLVECNPHLEDAKAARETIAMGLSLVRCALGETLL
SIO_010081: AWJ20_4675
subclass of: SO_0000673
so part of: AWJ20_4675
location: 222116..223063
location: region:222116-223063:1
so has part: feature:222116-223063:1:exon

XP_018736208.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:222116-223063:1:exon

AWJ20_4676
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: HOS3
locus tag: AWJ20_4676
so part of: sequence
location: complement(<225880..>228504)
location: region:225880-228504:-1
so has part: feature:225880-228504:-1:exon
subclass of: SO_0000010

30036833
type: Gene
SIO_000068: ncbigene

position:225880:-1
position: 225880
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:228504:-1
position: 228504
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:225880-228504:-1:exon

AWJ20_4676
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: HOS3
locus tag: AWJ20_4676
product: Hos3p
transcript id: XM_018881763.1
SIO_010081: AWJ20_4676
subclass of: SO_0000673
so part of: AWJ20_4676
location: complement(<225880..>228504)
location: region:225880-228504:-1
so has part: feature:225880-228504:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:225880-228504:-1:exon

AWJ20_4676
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: HOS3
locus tag: AWJ20_4676
inference: similar to AA sequence:KEGG_Orthology:K11484
note: Trichostatin A-insensitive homodimeric histone deacetylase (HDAC); specificity in vitro for histones H3, H4, H2A, and H2B; similar to Hda1p, Rpd3p, Hos1p, and Hos2p; deletion results in increased histone acetylation at rDNA repeats; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0032041 - NAD-dependent histone deacetylase activity (H3-K14 specific) [Evidence IEA]; GO_function: GO:0097372 - NAD-dependent histone deacetylase activity (H3-K18 specific) [Evidence IEA]; GO_function: GO:0046969 - NAD-dependent histone deacetylase activity (H3-K9 specific) [Evidence IEA]; GO_function: GO:0046970 - NAD-dependent histone deacetylase activity (H4-K16 specific) [Evidence IEA]; GO_function: GO:0004407 - histone deacetylase activity [Evidence IDA] [PMID 10535926]; GO_function: GO:0031078 - histone deacetylase activity (H3-K14 specific) [Evidence IEA]; GO_function: GO:0032129 - histone deacetylase activity (H3-K9 specific) [Evidence IEA]; GO_function: GO:0034739 - histone deacetylase activity (H4-K16 specific) [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0070932 - histone H3 deacetylation [Evidence IEA]; GO_process: GO:0070933 - histone H4 deacetylation [Evidence IEA]; GO_process: GO:0016575 - histone deacetylation [Evidence IDA] [PMID 10535926]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 17706600]; GO_process: GO:0000083 - regulation of transcription involved in G1/S transition of mitotic cell cycle [Evidence IGI,IPI] [PMID 19823668]; GO_process: GO:0006355 - regulation of transcription, DNA…
codon start: 1
product: Hos3p
translation: MAENTGSQSGHGYDPNGGWDVNSGDNSKPRPSFSEYLNFDDDGDTTEEDMELFSDKYVGRLGNGDLGDDELNAALEAMNLDGSEHGLHTHQNQFARPGAGVYGSQEGSLENSLVLEQSSGNEVNMPVMGSFQPRQEQDTLGSFNDNFGDSQDRERVNLRPVILPPPSSELYNVRDPFSRDAFTPEAASRESTFETSVDSTVDSTLETSVDTSVADVKSDPLPSTKLAESTVRETINTEPQIERRTEEKLKDPGAETGESGSGELPTTPKNKLIDAPIALPDDTDLSEFNSAFAQLKIGQDAISSSTEKKTLILLSPLSYKHVFSRNWVKKSYLDSIVERPERLMAASLGIGTAIAKSPTKYTVQVSDRRSDLRQASHVSIVHGSKWAKRLYQLCNDSVEKLKNGDVEVPGDWHEGDIYLTGETIDALEGVVAVSETAVDKIYAEGESKVFVSIRPPGHHSHPCVPSGFCLINNVHIAIQYARAKYGITHAVILDFDLHHGDGSQDICWKLSGLDDDEEENEEADSENEQHQENQSNSNEHSEPTVKTEQTPSSTTPAESLQTSTPTSSSQDNESPSKSPRKKGKKTSHPPPPPPPPPLSIGYFSLHDINSFPTEFGYATAENIKNASVCVMAHGMCIWNVHLEPYRDEAHFNEIYSNQYSALFEKARQFLQTGKTTSAHNKQPFKPLIVLSAGFDSSEYELLSMQRHQVSVPTSFFNRFTNDSVKLANEFTDGKIISMLEGGYSDAALSTGIFSHLTGLAEEQWDSNWCNPTVAKTLAKGSKLKWKRPATTSTSSTNSHHTTSPTASEPHWLNPGIELGRSLWPSQIKAQVLAATKPSASTTGRRNRKWDDDSTTSVLATPLRVLRDKTRKSVH
SIO_010081: AWJ20_4676
subclass of: SO_0000673
so part of: AWJ20_4676
location: complement(225880..228504)
location: region:225880-228504:-1
so has part: feature:225880-228504:-1:exon

XP_018736209.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:225880-228504:-1:exon

AWJ20_4677
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4677
so part of: sequence
location: <229381..>230076
location: region:229381-230076:1
so has part: feature:229381-230076:1:exon
subclass of: SO_0000010

30036834
type: Gene
SIO_000068: ncbigene

position:229381:1
position: 229381
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:230076:1
position: 230076
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:229381-230076:1:exon

AWJ20_4677
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4677
product: hypothetical protein
transcript id: XM_018881764.1
SIO_010081: AWJ20_4677
subclass of: SO_0000673
so part of: AWJ20_4677
location: <229381..>230076
location: region:229381-230076:1
so has part: feature:229381-230076:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:229381-230076:1:exon

AWJ20_4677
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4677
inference: similar to AA sequence:KEGG_Orthology:K18159
codon start: 1
product: hypothetical protein
translation: MRTGLVASPVPTELGLVNFREPALGLANLLVRCDKDLGGFSTADLSVVESDSTSNHAFGRFKGDLSLDLPADRPDIIRLGYAMFRTKDIEPKLFGLASSEYWNWEPYNQMVLRVRGDRRKYFINVQAESAYPTDLYQHRLFLKTPGQWEEVTVPLGNFILTNGGIIQQQQAMELSQVKSVGIGLIDRQYGPYQLDIDWIKVVTGDGPLKPAKPTKPSSADLTPGKRLSIDD
SIO_010081: AWJ20_4677
subclass of: SO_0000673
so part of: AWJ20_4677
location: 229381..230076
location: region:229381-230076:1
so has part: feature:229381-230076:1:exon

XP_018736210.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:229381-230076:1:exon

AWJ20_4678
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MNL1
locus tag: AWJ20_4678
so part of: sequence
location: complement(<230292..>232610)
location: region:230292-232610:-1
so has part: feature:230292-232610:-1:exon
subclass of: SO_0000010

30036835
type: Gene
SIO_000068: ncbigene

position:230292:-1
position: 230292
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:232610:-1
position: 232610
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:230292-232610:-1:exon

AWJ20_4678
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MNL1
locus tag: AWJ20_4678
product: alpha-1,2-mannosidase MNL1
transcript id: XM_018881765.1
SIO_010081: AWJ20_4678
subclass of: SO_0000673
so part of: AWJ20_4678
location: complement(<230292..>232610)
location: region:230292-232610:-1
so has part: feature:230292-232610:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:230292-232610:-1:exon

AWJ20_4678
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MNL1
locus tag: AWJ20_4678
inference: similar to AA sequence:KEGG_Orthology:K10084
note: Alpha-1,2-specific exomannosidase of the endoplasmic reticulum; in complex with Pdi1p, generates a Man7GlcNac2 oligosaccharide signal on glycoproteins destined for ubiquitin-proteasome degradation; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IEA]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IDA] [PMID 19279007]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0004559 - alpha-mannosidase activity [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0030246 - carbohydrate binding [Evidence IMP,ISS] [PMID 11375935]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004571 - mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [Evidence IEA]; GO_function: GO:0004571 - mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [Evidence IMP] [PMID 19124653]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11254655]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11375935]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006986 - response to unfolded protein [Evidence IEA]
codon start: 1
product: alpha-1,2-mannosidase MNL1
translation: MRTGLFGLRSSAVVAAVSVVGGIGALGGVEAGEARAVNPSFSNEFSRESLDSLKSEVRDLFYHGWTNYMDIAFPEDELMPLSCSGQSADLDDPMNMGLNDVLGGYSVTLVDSLDMFAIMGDDDLFVQYVADVEKYVSFNVSSTVQVFETTIRGMGGLLSAHLYATIPRLGHRINESEYNGHLLGLAYDLGERLLPAFDTVSGIPHPRVHLQEGVVPLPGQSKLITETCTSGAGSMLLEFSLLSRLTGDPRFEKAARRAFFQLWARRASTNLVGITIDAVSGNWQSVITGVGAGVDSFYEYALKYYVLFGDKSFFEVFETAYEALKKYSFDGWMFHNVNFSTGIYITSWIDALGAFFPGLQVLAGDLTSAIKNHLVYYKLWNTYGGIPERWSTGIHDAIDSVVLEWYPLRPEFIESNYYLYQATKDPFYLQVGASTLRDLQRINKVACGVAGTQDVRTGELSDRMESFFLSETVKYLYVLFDEENILNKEFSNYVYSTEAHPLWYDESVLEYSSVERFPELASKIADNLEVLEIPRYELDLFTTHDESYNDDEDCSIRPSVMFQRIRDIWQNRKREQLASYKIRPVKPEPQCTVWDTTNSGPFLQSSIASWNGFYTLDNFYDYTKPDWITTNHPDRPDAIELVPEFHTNFVDSQSTCRAAVSSQVEILFAVPSGEASKTPYSVGYNHGHPSLKGQHLVVALDLYGKRVRLERKENFVGPNSTFVITAVDDIDVKDVLLVHNLDLSGNDARLIQMVNNTVLFQGFRIENILIDF
SIO_010081: AWJ20_4678
subclass of: SO_0000673
so part of: AWJ20_4678
location: complement(230292..232610)
location: region:230292-232610:-1
so has part: feature:230292-232610:-1:exon

XP_018736211.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:230292-232610:-1:exon

AWJ20_4679
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RPS4A
locus tag: AWJ20_4679
so part of: sequence
location: <235127..>235852
location: region:235127-235852:1
so has part: feature:235127-235852:1:exon
subclass of: SO_0000010

30036836
type: Gene
SIO_000068: ncbigene

position:235127:1
position: 235127
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:235852:1
position: 235852
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235127-235852:1:exon

AWJ20_4679
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RPS4A
locus tag: AWJ20_4679
product: ribosomal 40S subunit protein S4A
transcript id: XM_018881766.1
SIO_010081: AWJ20_4679
subclass of: SO_0000673
so part of: AWJ20_4679
location: <235127..>235852
location: region:235127-235852:1
so has part: feature:235127-235852:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:235127-235852:1:exon

AWJ20_4679
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RPS4A
locus tag: AWJ20_4679
inference: similar to AA sequence:KEGG_Orthology:K02987
note: Protein component of the small (40S) ribosomal subunit; mutation affects 20S pre-rRNA processing; homologous to mammalian ribosomal protein S4, no bacterial homolog; RPS4A has a paralog, RPS4B, that arose from the whole genome duplication; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 6814480]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 6814480]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 6814480]; GO_process: GO:0006412 - translation [Evidence IEA]
codon start: 1
product: ribosomal 40S subunit protein S4A
translation: MLDKLSGTYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVKAILMQRLVKVDGKVRTDHTFPSGFMDVISLEKTGEHFRLVYDVKGRFAIHRITDEEAQYKLGKVKRVQLGKKGIPYLVTHDGRTIRYPDPEIKVNDTVKIDLTTGKISSFVKFENGNVVMITGGRNLGRVGVITHRERHEGGFDLVHIKDSLDNSFVTRLSNVFVIGEGNKPLISLPKGKGIKLSIAEERDRRRAQA
SIO_010081: AWJ20_4679
subclass of: SO_0000673
so part of: AWJ20_4679
location: 235127..235852
location: region:235127-235852:1
so has part: feature:235127-235852:1:exon

XP_018736212.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:235127-235852:1:exon

AWJ20_4680
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4680
so part of: sequence
location: complement(<236320..>238320)
location: region:236320-238320:-1
so has part: feature:236320-238320:-1:exon
subclass of: SO_0000010

30036838
type: Gene
SIO_000068: ncbigene

position:236320:-1
position: 236320
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:238320:-1
position: 238320
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:236320-238320:-1:exon

AWJ20_4680
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4680
product: hypothetical protein
transcript id: XM_018881768.1
SIO_010081: AWJ20_4680
subclass of: SO_0000673
so part of: AWJ20_4680
location: complement(<236320..>238320)
location: region:236320-238320:-1
so has part: feature:236320-238320:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:236320-238320:-1:exon

AWJ20_4680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4680
codon start: 1
product: hypothetical protein
translation: MKVRFRCSGGWSAWGRLGLGFVVGFGLLGGSLAGGVKGDGTTESEEGIRPLSWGHVNFVHTTDTHGWLPGHLSEPDFSANWGDYISFLQHMRELADEKGVDLIVVDTGDRHDGNGLSDATYPDGEISQQIFRKADIDIVAIGNHELYKSEVTSQEYHTMRPYYGEKYISSNIDVLDETGTGEWLPMGQRYRLFQTKNQNLTVLALGFLFNFKGNDYNSRVNKVQDVIKEDWFQEVIRTPNLDLVVLTGHAPVRYFDEFDAVVKEIRSVWPKMPIQALGGHTHIRDYRIYDDYAVGLESGRFLETIGFASVNLSSEANVQQTVHSSQLDKTNKQNEQESSESGFGSGFEDSVSSGPTFTRRYIDFNVRSLSTHAEKSLNEFYTAEGNATTQSIIQFREQLNLTDIICCVPQTYYTTRAKYPGPDSLFTLLEEEVLPLLSGVVEPSRDDHPRFILLNTGALRFDLFRGPFTVDTGYIVAPFRNEWIYIPSMPIKIARQILPLLNQEGSILSTNEHATDFEELDFTELGPPEQRGRGSRNNLSSSQHRHNYDEQLVFSSEQQQQQHRQKLTDGYVTHDDLGSDGDDTPHNPWPFYDIPNVIQASDNIDRTTTHVDLIFYDFMKPFIVHALKTLRQDQYANNIVYYGGNSVISLLPEFLLGLETGTSCIV
SIO_010081: AWJ20_4680
subclass of: SO_0000673
so part of: AWJ20_4680
location: complement(236320..238320)
location: region:236320-238320:-1
so has part: feature:236320-238320:-1:exon

XP_018736213.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:236320-238320:-1:exon

AWJ20_4681
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MGM101
locus tag: AWJ20_4681
so part of: sequence
location: <240136..>241248
location: region:240136-241248:1
so has part: feature:240136-241248:1:exon
subclass of: SO_0000010

30036839
type: Gene
SIO_000068: ncbigene

position:240136:1
position: 240136
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:241248:1
position: 241248
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:240136-241248:1:exon

AWJ20_4681
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MGM101
locus tag: AWJ20_4681
product: Mgm101p
transcript id: XM_018881769.1
SIO_010081: AWJ20_4681
subclass of: SO_0000673
so part of: AWJ20_4681
location: <240136..>241248
location: region:240136-241248:1
so has part: feature:240136-241248:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:240136-241248:1:exon

AWJ20_4681
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MGM101
locus tag: AWJ20_4681
note: Protein with a role in mitochondrial DNA recombinational repair; also involved in interstrand cross-link repair; binds to and catalyzes the annealing of single-stranded mtDNA; oligomerizes to form rings and filaments; related to Rad52-type recombination proteins, with limited overall similarity but sharing conserved functionally important residues; component of the mitochondrial nucleoid, required for the repair of oxidative mtDNA damage; GO_component: GO:0000262 - mitochondrial chromosome [Evidence IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IEA,IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 10209025]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 10869431]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA,IMP] [PMID 22948312]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 10209025]; GO_process: GO:0000733 - DNA strand renaturation [Evidence IDA] [PMID 22027892]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0036297 - interstrand cross-link repair [Evidence IGI] [PMID 22912599]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IEA]; GO_process: GO:0000725 - recombinational repair [Evidence IMP] [PMID 22027892]
codon start: 1
product: Mgm101p
translation: MISRFRGGSATTGFVRGLKTATSYKSSVAVASRPVKSPAATRAMAPAATVRSGSGYSSARKSPAAGSGSSSSARYATAATSRSTRTATSRTKTAAAAPAATSAPAIDPAIFEGSSVGPSSGTIHSSKKSSSATPAEPLASNTIDSSGSASSAPPTFASSPTSTTSSAANSAATRNSSPHIDLAATNSWTEFDDSPVDEGVENGENWTRSFRGLGSEPFASHVTDTLLAELKPEEIEITPDGLLFLPEIRYRRVLNRAFGPGGWGLAPRSKTLVTAKSVSREYALICHGRLVAIARGEQDYFDPNGITTAMEGCKSNAMMRCCKDLGIASELWDPFFIRDFKTKYCEQKYFEKKRRMVWKRKDREWEYPYK
SIO_010081: AWJ20_4681
subclass of: SO_0000673
so part of: AWJ20_4681
location: 240136..241248
location: region:240136-241248:1
so has part: feature:240136-241248:1:exon

XP_018736214.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:240136-241248:1:exon

AWJ20_4682
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4682
so part of: sequence
location: <241986..>243131
location: region:241986-243131:1
so has part: feature:241986-243131:1:exon
subclass of: SO_0000010

30036840
type: Gene
SIO_000068: ncbigene

position:241986:1
position: 241986
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:243131:1
position: 243131
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:241986-243131:1:exon

AWJ20_4682
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4682
product: hypothetical protein
transcript id: XM_018881770.1
SIO_010081: AWJ20_4682
subclass of: SO_0000673
so part of: AWJ20_4682
location: <241986..>243131
location: region:241986-243131:1
so has part: feature:241986-243131:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:241986-243131:1:exon

AWJ20_4682
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4682
codon start: 1
product: hypothetical protein
translation: MVSISEQMARPPAPAAQSTAQAGPAVRQNTFGQGPGPQFRFSQGVWAHEGSSTSGKKNRPPRAQQSSSGSGTGKGGSTKVKVDSLADIEAALKELEMGSTNHEVCGCMATRHPLLEIAPNCLNCGRIICTKEGLGPCCFCGSPLISNEELLEINRVLQLEKEQLTAGMSKKALRQAGIDPGKALSDMGLKPNKNEKSLEDAQRRLNTLLEFQESSAQRTKIIDQVSDFETPFQGVNKWASPIEQAQQLKRQQHQLRKMHEQQLQRSGRGKKVISIDLKGNKVYMTESAEPLESEGEEDELSEGVSTEAQTNSTSDKDKKKPLNSWNPNSYGKSFIKPVYRPVAGSGKRQPNSILKKIGIDEITGSHSRLNAEDDETRVLEM
SIO_010081: AWJ20_4682
subclass of: SO_0000673
so part of: AWJ20_4682
location: 241986..243131
location: region:241986-243131:1
so has part: feature:241986-243131:1:exon

XP_018736215.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:241986-243131:1:exon

AWJ20_4683
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4683
so part of: sequence
location: <244559..>244903
location: region:244559-244903:1
so has part: feature:244559-244903:1:exon
subclass of: SO_0000010

30036841
type: Gene
SIO_000068: ncbigene

position:244559:1
position: 244559
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:244903:1
position: 244903
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:244559-244903:1:exon

AWJ20_4683
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4683
product: hypothetical protein
transcript id: XM_018881771.1
SIO_010081: AWJ20_4683
subclass of: SO_0000673
so part of: AWJ20_4683
location: <244559..>244903
location: region:244559-244903:1
so has part: feature:244559-244903:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:244559-244903:1:exon

AWJ20_4683
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4683
codon start: 1
product: hypothetical protein
translation: MSGTSMASPAVAGTIAMFMGMGDTVEAAMEKVTALATVDAIDRRSTLVKPRSPNLIAYNGLDLGIRKEYVDDDSANGSDDDTESLLNENLSTTEKIYSSLRNLNGRSPANTTDI
SIO_010081: AWJ20_4683
subclass of: SO_0000673
so part of: AWJ20_4683
location: 244559..244903
location: region:244559-244903:1
so has part: feature:244559-244903:1:exon

XP_018736216.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:244559-244903:1:exon

AWJ20_4684
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RCF2
locus tag: AWJ20_4684
so part of: sequence
location: <247121..>247855
location: region:247121-247855:1
so has part: feature:247121-247855:1:exon
subclass of: SO_0000010

30036842
type: Gene
SIO_000068: ncbigene

position:247121:1
position: 247121
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:247855:1
position: 247855
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:247121-247855:1:exon

AWJ20_4684
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RCF2
locus tag: AWJ20_4684
product: Rcf2p
transcript id: XM_018881772.1
SIO_010081: AWJ20_4684
subclass of: SO_0000673
so part of: AWJ20_4684
location: <247121..>247855
location: region:247121-247855:1
so has part: feature:247121-247855:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:247121-247855:1:exon

AWJ20_4684
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RCF2
locus tag: AWJ20_4684
note: Cytochrome c oxidase subunit; has a role in assembly of respiratory supercomplexes; similar to Rcf1p, and either Rcf1p or Rcf2p is required for late-stage assembly of the Cox12p and Cox13p subunits and for cytochrome c oxidase activity; associates with the cytochrome c oxidase - cytochrome bc1 supercomplex; null mutant accumulates reactive oxygen species; member of the conserved hypoxia induced gene family; C. elegans homolog is functional in yeast; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031305 - integral component of mitochondrial inner membrane [Evidence IDA] [PMID 22342701]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0097249 - mitochondrial respiratory chain supercomplex [Evidence IDA] [PMID 22310663]; GO_component: GO:0097249 - mitochondrial respiratory chain supercomplex [Evidence IDA] [PMID 22342701]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0033617 - mitochondrial respiratory chain complex IV assembly [Evidence IGI] [PMID 22310663]
codon start: 1
product: Rcf2p
translation: MKFPSKEELNEYTHTIAVGAIKGAVIGTGVSALGYLYAKRRAPVFFTYGAFPRTFLLIAPPIMIGVTTMEFASREFERERYGYVDAASASPDMLIPKINGSNIDPKLAAKVGANGTDGAAAEPNAVLQYAAENKYKIIMGAWAASLAGSYWAVSKDKYLTKSQRIVQARMYAQGLTVALLLVSVMLSVSNGKEKDNSRETGEADLREGKQTWEEIVEQETARETAAHLPLHLSDRKNNGNHHHD
SIO_010081: AWJ20_4684
subclass of: SO_0000673
so part of: AWJ20_4684
location: 247121..247855
location: region:247121-247855:1
so has part: feature:247121-247855:1:exon

XP_018736217.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:247121-247855:1:exon

AWJ20_4685
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TUF1
locus tag: AWJ20_4685
so part of: sequence
location: complement(<248524..>249822)
location: region:248524-249822:-1
so has part: feature:248524-249822:-1:exon
subclass of: SO_0000010

30036843
type: Gene
SIO_000068: ncbigene

position:248524:-1
position: 248524
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:249822:-1
position: 249822
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:248524-249822:-1:exon

AWJ20_4685
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TUF1
locus tag: AWJ20_4685
product: translation elongation factor Tu
transcript id: XM_018881773.1
SIO_010081: AWJ20_4685
subclass of: SO_0000673
so part of: AWJ20_4685
location: complement(<248524..>249822)
location: region:248524-249822:-1
so has part: feature:248524-249822:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:248524-249822:-1:exon

AWJ20_4685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TUF1
locus tag: AWJ20_4685
inference: similar to AA sequence:KEGG_Orthology:K02358
note: Mitochondrial translation elongation factor Tu; comprises both GTPase and guanine nucleotide exchange factor activities, while these activities are found in separate proteins in S. pombe and humans; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence ISS] [PMID 6353412]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IGI] [PMID 15695360]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 3301847]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003746 - translation elongation factor activity [Evidence IEA,IEA]; GO_function: GO:0003746 - translation elongation factor activity [Evidence IGI] [PMID 15695360]; GO_function: GO:0003746 - translation elongation factor activity [Evidence IDA] [PMID 3301847]; GO_function: GO:0003746 - translation elongation factor activity [Evidence ISS] [PMID 6353412]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0032543 - mitochondrial translation [Evidence IGI] [PMID 15695360]; GO_process: GO:0032543 - mitochondrial translation [Evidence IGI] [PMID 16777356]; GO_process: GO:0070125 - mitochondrial translational elongation [Evidence ISA] [PMID 3905388]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006414 - translational elongation [Evidence IEA,IEA,IEA]
codon start: 1
product: translation elongation factor Tu
translation: MFGNLRLPGAIALRTVFSTASKSVVPRAAINSRWASTFQRTKPHLNIGTIGHVDHGKTTLTAAITKVLASKGGANFLDYASIDKAPEERARGITITSAHVEYETDNRHYAHVDCPGHADYIKNMISGAARMDGAIIVVAASDGQMPQTREHLLLARQVGIQHVVVFVNKVDTIDDPEMLELVEMEMRELLTTYGFDGDNTPVVMGSALCALEDKRPEIGVQKIEELLDRIDEYIPTPSRDLDNAFLMPLESVFSIPGRGTVVTGRVERGVLSKGEEVEIVGHHKEAITTVVTGIEMFKKELDKAQAGDNAGLLLRGVKREDLKRGMVIAKVGTVKAHTKFLSSIYVLTKEEGGRHSPFGVNYRPQMFVSSADVTVTLTFPEGIEHDHQVFPGDNTEMIGELVHPTPIEVGQRFNIREGGRTVGTGLVTRIIE
SIO_010081: AWJ20_4685
subclass of: SO_0000673
so part of: AWJ20_4685
location: complement(248524..249822)
location: region:248524-249822:-1
so has part: feature:248524-249822:-1:exon

XP_018736218.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:248524-249822:-1:exon

AWJ20_4686
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PRC1
locus tag: AWJ20_4686
so part of: sequence
location: <256171..>257940
location: region:256171-257940:1
so has part: feature:256171-257940:1:exon
subclass of: SO_0000010

30036844
type: Gene
SIO_000068: ncbigene

position:256171:1
position: 256171
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:257940:1
position: 257940
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:256171-257940:1:exon

AWJ20_4686
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PRC1
locus tag: AWJ20_4686
product: carboxypeptidase C PRC1
transcript id: XM_018881774.1
SIO_010081: AWJ20_4686
subclass of: SO_0000673
so part of: AWJ20_4686
location: <256171..>257940
location: region:256171-257940:1
so has part: feature:256171-257940:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:256171-257940:1:exon

AWJ20_4686
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PRC1
locus tag: AWJ20_4686
inference: similar to AA sequence:KEGG_Orthology:K13289
note: Vacuolar carboxypeptidase Y (proteinase C, CPY); broad-specificity C-terminal exopeptidase involved in non-specific protein degradation in the vacuole; member of the serine carboxypeptidase family; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 23708375]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA,IEA]; GO_function: GO:0004180 - carboxypeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004185 - serine-type carboxypeptidase activity [Evidence IEA]; GO_function: GO:0004185 - serine-type carboxypeptidase activity [Evidence IDA,IMP] [PMID 8679540]; GO_process: GO:0046938 - phytochelatin biosynthetic process [Evidence IDA,IMP] [PMID 17408619]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence TAS] [PMID 8789256]
codon start: 1
product: carboxypeptidase C PRC1
translation: MKLNSGLTALAVLSSASALLVPPFTEKKEDSSSPSTQQFKFQIPSELGSIDGLSSYLHIDRAQVASIMQTLAHELGQSWHDIPSLAIDSWYEVLKHSPQSFPELRENLVRQLELSRELNLPVSQVMDWGLKQSSSAHGGKAGVASSSSSSSNVKVDWEHVVESDNFPAHSLNVKSPGSLGIDKVKQYSGYLNDNENDKHYFYWFFESRNDPKNDPVILWLNGGPGCSSLTGLLFENGPASISPELKPVHNPYSWNNNASVIFLDQPVNTGFSYSDSSTVSDTVTAGKDVYVFLSLFFQQFPEYNNLPFHIAGESYAGHYIPVFASEILSHDDRNFNLSSVLIGNGLTDPLRQYDFYEPMACGKGGEPSVLSQEECDGMINSQPRCDNLINACYNSQSAWTCVPATVYCNNAMMGPYQRTGKNVYDIRANCEGGSLCYTALDDIDKYLNKPEVKAALGAEVDEYASCNFDTNRNFVFAGDWMKPYQTSVTDLLEKDIPVLIYAGDKDFICNWLGNENWSKELEWSGGDKFKAAPLEPWKLADKEVGQVRNAGSHFTFLRIYGAGHMAPYDQPEASLEMVNRWISGDFAFN
SIO_010081: AWJ20_4686
subclass of: SO_0000673
so part of: AWJ20_4686
location: 256171..257940
location: region:256171-257940:1
so has part: feature:256171-257940:1:exon

XP_018736219.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:256171-257940:1:exon

AWJ20_4687
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4687
so part of: sequence
location: complement(<258967..>259344)
location: region:258967-259344:-1
so has part: feature:258967-259344:-1:exon
subclass of: SO_0000010

30036845
type: Gene
SIO_000068: ncbigene

position:258967:-1
position: 258967
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:259344:-1
position: 259344
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:258967-259344:-1:exon

AWJ20_4687
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4687
product: hypothetical protein
transcript id: XM_018881775.1
SIO_010081: AWJ20_4687
subclass of: SO_0000673
so part of: AWJ20_4687
location: complement(<258967..>259344)
location: region:258967-259344:-1
so has part: feature:258967-259344:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:258967-259344:-1:exon

AWJ20_4687
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4687
codon start: 1
product: hypothetical protein
translation: MDSSRLHNILDNIYIPKGPQESSNSIPNHHPTLIMQDYQTDTTHHLKCGCCAGACIEENAWWNKKSSTTTPASKTTSTTTKKQAGQAAPRPSVMSTVSSSSIASASSNFSAYDSYSESSASDYEN
SIO_010081: AWJ20_4687
subclass of: SO_0000673
so part of: AWJ20_4687
location: complement(258967..259344)
location: region:258967-259344:-1
so has part: feature:258967-259344:-1:exon

XP_018736220.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:258967-259344:-1:exon

AWJ20_4688
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TPD3
locus tag: AWJ20_4688
so part of: sequence
location: complement(<262449..>264314)
location: region:262449-264314:-1
so has part: feature:262449-264314:-1:exon
subclass of: SO_0000010

30036846
type: Gene
SIO_000068: ncbigene

position:262449:-1
position: 262449
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:264314:-1
position: 264314
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:262449-264314:-1:exon

AWJ20_4688
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TPD3
locus tag: AWJ20_4688
product: protein phosphatase 2A structural subunit TPD3
transcript id: XM_018881776.1
SIO_010081: AWJ20_4688
subclass of: SO_0000673
so part of: AWJ20_4688
location: complement(<262449..>264314)
location: region:262449-264314:-1
so has part: feature:262449-264314:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:262449-264314:-1:exon

AWJ20_4688
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TPD3
locus tag: AWJ20_4688
inference: similar to AA sequence:KEGG_Orthology:K03456
note: Regulatory subunit A of the heterotrimeric PP2A complex; the heterotrimeric protein phosphatase 2A (PP2A) complex also contains regulatory subunit Cdc55p and either catalytic subunit Pph21p or Pph22p; required for cell morphogenesis and transcription by RNA polymerase III; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 12388751]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 12388751]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12388751]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 12388751]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12388751]; GO_component: GO:0000159 - protein phosphatase type 2A complex [Evidence IDA] [PMID 17550305]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 12388751]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA,IMP] [PMID 17550305]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence IMP] [PMID 9001215]; GO_process: GO:0006417 - regulation of translation [Evidence IMP] [PMID 10329624]
codon start: 1
product: protein phosphatase 2A structural subunit TPD3
translation: MRRLSTISLALGKERTRTELVPFLEEVTQEDEDEVLTVLAEELGGFIPYVGGPDNAHVLIPALEALSGAEEPVVRDKAVESLNLICQAFSTSQVKEYFLPLITRLSSTDWFTSRVSATGLYAAAISKLEGTERNDLLVLYKDLTQDEAPMVRRAAATSLPKIIGELPELDFDENSTLHTMFISQITDDQDSVRLLSVDVLIAIAESLKKQSITKYNSELIGLTLDLFNDKSWRVRYMAADRYERLARSLDGSELREKFIPSFVKLMKDSEAEVRTAISKQIPGFCSLIPLAAIISEIIPNVELLAEDSSQHVRAALASEISRLAPLLEKEKTTQYLLPTFLQMLKDEFPDVRLNIISKLKIVNDVIGIELLSKSLLPAISELAKDKQWRVRLAIIEYIPLLAEQLGVSFFDKELGPLCMTWLWDSVFSIREAATLNLRKLTEVFGVDWAKDEIIQNVIAVAENSNYLYRLTALFAITTLIPVMDQAAITDSILPFIINLTDDAIPNIRFNIAKSFKVLAETCLTWTDGGDEQDSATTTGPASPAAAKTDSASSTTEPSTGTSESTAATANKPVSPLAKQIITETIIPRLEKLTGDSDVDVRYFANKSLEEIDVLAKPLLEK
SIO_010081: AWJ20_4688
subclass of: SO_0000673
so part of: AWJ20_4688
location: complement(262449..264314)
location: region:262449-264314:-1
so has part: feature:262449-264314:-1:exon

XP_018736221.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:262449-264314:-1:exon

AWJ20_4689
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: NUO1
locus tag: AWJ20_4689
so part of: sequence
location: <267515..>268207
location: region:267515-268207:1
so has part: feature:267515-268207:1:exon
subclass of: SO_0000010

30036847
type: Gene
SIO_000068: ncbigene

position:267515:1
position: 267515
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:268207:1
position: 268207
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:267515-268207:1:exon

AWJ20_4689
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: NUO1
locus tag: AWJ20_4689
product: NADH dehydrogenase (ubiquinone) Fe-S protein 8
transcript id: XM_018881777.1
SIO_010081: AWJ20_4689
subclass of: SO_0000673
so part of: AWJ20_4689
location: <267515..>268207
location: region:267515-268207:1
so has part: feature:267515-268207:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:267515-268207:1:exon

AWJ20_4689
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: NUO1
locus tag: AWJ20_4689
inference: similar to AA sequence:KEGG_Orthology:K03941
codon start: 1
product: NADH dehydrogenase (ubiquinone) Fe-S protein 8
translation: MLSRSLRTNMGVSSPLRSVLMRQNGAGASASKMAVLRSCFHNVAGGTEQGVPPVGFRVHRPPTWDESHESALDKATKFFLLSEMFRGMWVVLEQYFRAPYTIYYPFEKGPVSPRFRGEHALRRYPSGEERCIACKLCEAICPALAITIEAEERVDGSRRTTRYDIDMTKCIYCGYCQESCPVDAIVETPNVEYSTETREELLYNKEKLLANGDKWEQEIQYGLDADAPYR
SIO_010081: AWJ20_4689
subclass of: SO_0000673
so part of: AWJ20_4689
location: 267515..268207
location: region:267515-268207:1
so has part: feature:267515-268207:1:exon

XP_018736222.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:267515-268207:1:exon

AWJ20_4690
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4690
so part of: sequence
location: complement(<275781..>276900)
location: region:275781-276900:-1
so has part: feature:275781-276900:-1:exon
subclass of: SO_0000010

30036849
type: Gene
SIO_000068: ncbigene

position:275781:-1
position: 275781
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:276900:-1
position: 276900
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:275781-276900:-1:exon

AWJ20_4690
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4690
product: hypothetical protein
transcript id: XM_018881778.1
SIO_010081: AWJ20_4690
subclass of: SO_0000673
so part of: AWJ20_4690
location: complement(join(<275781..276779,276898..>276900))
location: region:275781-276900:-1
so has part: feature:276898-276900:-1:exon
so has part: feature:275781-276779:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:276898-276900:-1:exon

position:276898:-1
position: 276898
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:275781-276779:-1:exon

position:276779:-1
position: 276779
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

AWJ20_4690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4690
inference: similar to AA sequence:KEGG_Orthology:K09142
codon start: 1
product: hypothetical protein
translation: MIARAAVLYGASEIVIFDVANVSGSDAVDQDGDTVVSDSVVEKPKKVVFDEAGESSESKKDAKKESEGPSPECIRLASLLQYYITPSYLRNLLFTDLKPLQYAKKLPKIPGLPFLSHSSSQFLEGLTVAGKLPRSATGGVKKKKGSRKSKKQLQLEASTEYVQIGEQNVLKLDNQRVPLGTRVTVDTKSKKVVSPKDAYTSSSGVLFTNKDSFGYTVRIAKTFGKIFSESIYPGGYTYTAYVPSEEFVASSATAYEPIRPIVDKKGTIFDGAKSSSHILLVYGRWADVNKAVQNDKEELNELDDATGIFDGRFAIRASGRTEDAILISLAQLE
SIO_010081: AWJ20_4690
subclass of: SO_0000673
so part of: AWJ20_4690
location: complement(join(275781..276779,276898..276900))
location: region:275781-276900:-1
so has part: feature:276898-276900:-1:exon
so has part: feature:275781-276779:-1:exon

XP_018736223.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:276898-276900:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:275781-276779:-1:exon

AWJ20_4691
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4691
so part of: sequence
location: complement(<278236..>279282)
location: region:278236-279282:-1
so has part: feature:278236-279282:-1:exon
subclass of: SO_0000010

30036850
type: Gene
SIO_000068: ncbigene

position:278236:-1
position: 278236
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:279282:-1
position: 279282
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:278236-279282:-1:exon

AWJ20_4691
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4691
product: hypothetical protein
transcript id: XM_018881779.1
SIO_010081: AWJ20_4691
subclass of: SO_0000673
so part of: AWJ20_4691
location: complement(<278236..>279282)
location: region:278236-279282:-1
so has part: feature:278236-279282:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:278236-279282:-1:exon

AWJ20_4691
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4691
codon start: 1
product: hypothetical protein
translation: MGPLQRARVYDWSKEFLIVLSIMGYVVLHFLGLRVNQGKVSSWIKAHLDVLQTQFYQVGPKPNITSTKSIDYIVTDGATAYNTYATGRVNVSHVLAKFRLLGRQNFITLSMEYFTSIFLQGFNPRDQIDVVITPSDPAAIDPFVFAVVNKENMSRSRDQNYFLSITRTVDSDKLPPSFTFMTESAEVTDTVVELAKEFFQALETPGVEKVLEYFAITDQQPTAPLSLKDLEPKTKLYLSLKFPSNKEQSELSARILNSAINLVDILVAKKTWRPEVAKKIKATRDAEIKKVQKALDLIKAEELAQKKTEALREKKAALAKLSPEEQKKLDQKSKEKEQRKLRSKQIRR
SIO_010081: AWJ20_4691
subclass of: SO_0000673
so part of: AWJ20_4691
location: complement(278236..279282)
location: region:278236-279282:-1
so has part: feature:278236-279282:-1:exon

XP_018736224.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:278236-279282:-1:exon

AWJ20_4692
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4692
so part of: sequence
location: complement(<280105..>280569)
location: region:280105-280569:-1
so has part: feature:280105-280569:-1:exon
subclass of: SO_0000010

30036851
type: Gene
SIO_000068: ncbigene

position:280105:-1
position: 280105
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:280569:-1
position: 280569
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:280105-280569:-1:exon

AWJ20_4692
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4692
product: hypothetical protein
transcript id: XM_018881780.1
SIO_010081: AWJ20_4692
subclass of: SO_0000673
so part of: AWJ20_4692
location: complement(<280105..>280569)
location: region:280105-280569:-1
so has part: feature:280105-280569:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:280105-280569:-1:exon

AWJ20_4692
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4692
codon start: 1
product: hypothetical protein
translation: MKVAPGALVCRWFALDGYCDTGDKCDKRHVFECPDFEATGQCHRKKCPLKHILRAKEEGKFETHDVTNTTEDSSLPIDLDAVIDMINAEDESPDDDSDNDESENDDDGSNDDESGSDDDDSADDVSSDDSDVMQWDFTHNNHLPDDDNEDFISI
SIO_010081: AWJ20_4692
subclass of: SO_0000673
so part of: AWJ20_4692
location: complement(280105..280569)
location: region:280105-280569:-1
so has part: feature:280105-280569:-1:exon

XP_018736225.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:280105-280569:-1:exon

AWJ20_4693
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4693
so part of: sequence
location: complement(<281151..>281639)
location: region:281151-281639:-1
so has part: feature:281151-281639:-1:exon
subclass of: SO_0000010

30036852
type: Gene
SIO_000068: ncbigene

position:281151:-1
position: 281151
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:281639:-1
position: 281639
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:281151-281639:-1:exon

AWJ20_4693
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4693
product: hypothetical protein
transcript id: XM_018881781.1
SIO_010081: AWJ20_4693
subclass of: SO_0000673
so part of: AWJ20_4693
location: complement(<281151..>281639)
location: region:281151-281639:-1
so has part: feature:281151-281639:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:281151-281639:-1:exon

AWJ20_4693
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4693
codon start: 1
product: hypothetical protein
translation: MTRPYHSNSYRGRGSGYRGGYRGAHRGGYHHHQSTGPTHQWKRVEESSSQTTSSTTTSGGTGISTGSNTTSATSSTPIKAPKPVANSDGTVDIGGVKYRTAKNGSKLIRVDPSEQPKESTPRKTTIQGVSYVRTKSGNLLRKNPLSNDRCVDHSLTYYLACF
SIO_010081: AWJ20_4693
subclass of: SO_0000673
so part of: AWJ20_4693
location: complement(281151..281639)
location: region:281151-281639:-1
so has part: feature:281151-281639:-1:exon

XP_018736226.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:281151-281639:-1:exon

AWJ20_4694
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MTM1
locus tag: AWJ20_4694
so part of: sequence
location: complement(<284118..>285305)
location: region:284118-285305:-1
so has part: feature:284118-285305:-1:exon
subclass of: SO_0000010

30036853
type: Gene
SIO_000068: ncbigene

position:284118:-1
position: 284118
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:285305:-1
position: 285305
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:284118-285305:-1:exon

AWJ20_4694
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MTM1
locus tag: AWJ20_4694
product: Mtm1p
transcript id: XM_018881782.1
SIO_010081: AWJ20_4694
subclass of: SO_0000673
so part of: AWJ20_4694
location: complement(<284118..>285305)
location: region:284118-285305:-1
so has part: feature:284118-285305:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:284118-285305:-1:exon

AWJ20_4694
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MTM1
locus tag: AWJ20_4694
inference: similar to AA sequence:KEGG_Orthology:K15119
note: Mitochondrial protein of the mitochondrial carrier family; high affinity pyridoxal 5'-phosphate transporter; involved in mitochondrial iron homeostasis and in activating mitochondrial Sod2p by facilitating insertion of an essential manganese cofactor; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 12890866]; GO_function: GO:0016530 - metallochaperone activity [Evidence IMP] [PMID 12890866]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IDA] [PMID 24184947]; GO_process: GO:0006828 - manganese ion transport [Evidence IMP] [PMID 12890866]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Mtm1p
translation: MVAACSGSLLTSVVVTPFDVVRVRMQQQSAFPMVDFIDLAKNKVANASNKGVEISYKAAAGQVRNNLSKVAVSSLESLRLSSSTGVAAAEMAVKSFPITQIPSGVGVTTCCKDVFWFPSTIDYCVASQLEISTSCAVDETKMNRLNGTWDGFRKIVAGEGLPALWRGLSLTLLMSVPSNVVYFIAYEYMRDNSPLSESTILNPLICGGLARSLSATVVSPIELVKTRLQSAKGPDAVQVVTKGVREMVATQGFSSLWRGLVLTLWRDVPFSSIYWACVEFIRAELAQTHYFRDQKSDSSTFSQAFIAGSVGGSIAAILTTPFDVGKTRRQIGHHASSSSSMGMLPFMMKILKTEGVGALYVGAIPRILKVSPACAIMISSYEMGKKFFARDNNAL
SIO_010081: AWJ20_4694
subclass of: SO_0000673
so part of: AWJ20_4694
location: complement(284118..285305)
location: region:284118-285305:-1
so has part: feature:284118-285305:-1:exon

XP_018736227.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:284118-285305:-1:exon

AWJ20_4695
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: KOG1
locus tag: AWJ20_4695
so part of: sequence
location: <287332..>291078
location: region:287332-291078:1
so has part: feature:287332-291078:1:exon
subclass of: SO_0000010

30036854
type: Gene
SIO_000068: ncbigene

position:287332:1
position: 287332
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:291078:1
position: 291078
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:287332-291078:1:exon

AWJ20_4695
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: KOG1
locus tag: AWJ20_4695
product: Kog1p
transcript id: XM_018881783.1
SIO_010081: AWJ20_4695
subclass of: SO_0000673
so part of: AWJ20_4695
location: <287332..>291078
location: region:287332-291078:1
so has part: feature:287332-291078:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:287332-291078:1:exon

AWJ20_4695
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: KOG1
locus tag: AWJ20_4695
inference: similar to AA sequence:KEGG_Orthology:K07204
note: Subunit of TORC1; TORC1 is a rapamycin-sensitive complex involved in growth control that contains Tor1p or Tor2p, Lst8p and Tco89p; contains four HEAT repeats and seven WD-40 repeats; may act as a scaffold protein to couple TOR and its effectors; GO_component: GO:0031931 - TORC1 complex [Evidence IEA]; GO_component: GO:0031931 - TORC1 complex [Evidence IPI] [PMID 12408816]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14562095]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 16394584]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 17560372]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16394584]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 21070969]; GO_process: GO:0031929 - TOR signaling [Evidence IEA]; GO_process: GO:0031929 - TOR signaling [Evidence IC] [PMID 12408816]; GO_process: GO:0009267 - cellular response to starvation [Evidence IMP] [PMID 12408816]; GO_process: GO:0001558 - regulation of cell growth [Evidence IPI] [PMID 12408816]
codon start: 1
product: Kog1p
translation: MNDPKKSLEMIGKALQSQYEALSTRTKYKQSLDPNVEDAKRFCMSLRRSARDERILFHYNGHGVPRPTPSGEIWVFNRGYTQYIPVSVYDLQTWLGAPCIYAYDCHAAGHIVNNFNAFVEKRKENEKKNGPDPNGPPAEAYENCIQLAACRADEVLPMHPELPADLFTCCITSPIDIAVRWFVMQSPLLRGQFDNLSIPGKITDRRTPLGELNWIFTAITDTIAWSTLEGPLFKRLFRQDLVVAAMFRNFLLAVRIMRVHNCHPVSSPELPDTHNHPMWDAWDLAVDHCLVQLPMLQAASEPGGVPYTYKHSDFFEQQLTAFEVWLKYKSSDLDKPPEQLPVLLQVLLSQIHRLRALVLLSKYLDLGPKAVHLALSIGIFPYVLKLLQSPAPELKPVLVFIWARIMAVDHKAIKQELVKENGYAYFINILIPQDGPVVNAINVPEHLAMCAFVTALFCEGYKQGQRLCMGPDLFQACLTHTEELESPLLRQWATLCISQLWDGYPEAKWQALVKDKTALDRLSRLLNDPVPEVRTACIVALTTFLGDGETVNPNSPNINATAVTSGLTHGDIRQKELSFAISVLALTNDASSIVRREVVVFYSKFVKQYRSRFLVAAYSSLEEDVAILRSQTNIDDIRANSPAHGSIYTVVWRALLVLTEDPFPEVADYAQDVVDYVFQLLRKTPLSAEVEKLEQYLVQYSMSSLSVNLPELQNNSPNKATRVSSMGPSAVAGSGVGHGSHNGPTSESKFSQTLLKRSVSFANTLKQYAWGSGEEEQLQSQNQHPQHGRAGNGSASGSNTLWGGFGGSFVNSTGAGAGNLGNTRSAFPTVTTVAYGVGRRPRPVRYQTKDYTKKIVLPLASGFFEWSCEYFQEPQMCNTESDEPGSERYLERVWRKSRNEHIIAETQVQKEMAVYGGWSTHVGLLNNLTQPTKLEFAQFEPHLVGVDDRDGVTVWDWTESTKLNRFCNSNPVGTRITEAKFLNEDDVPLLLTGSSEGVVRIYRHYESVKNIELACSWRVLTDLLPAHRNSGLIAEWQQSRGALLVGGDVRVIRVWDAPRELCTSDIPARSGSPVTALTSDQVAGNIVVAGFGDGGIRVYDRRLGPRESLVKTWKRHKSWVVNVRMQRGGARELVSGSTDGQVYLWDIRLDEPVLSFQAHSNGMRAIDVHEHAPVIATGSQTVGIWSTNGNRVATVRPPSSGYSLGSKASQVSALSFHPHRMIMAVNNVQDAHIGVFNCTDDPSRKYGR
SIO_010081: AWJ20_4695
subclass of: SO_0000673
so part of: AWJ20_4695
location: 287332..291078
location: region:287332-291078:1
so has part: feature:287332-291078:1:exon

XP_018736228.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:287332-291078:1:exon

AWJ20_4696
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: LTV1
locus tag: AWJ20_4696
so part of: sequence
location: complement(<291263..>292501)
location: region:291263-292501:-1
so has part: feature:291263-292501:-1:exon
subclass of: SO_0000010

30036855
type: Gene
SIO_000068: ncbigene

position:291263:-1
position: 291263
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:292501:-1
position: 292501
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:291263-292501:-1:exon

AWJ20_4696
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: LTV1
locus tag: AWJ20_4696
product: Ltv1p
transcript id: XM_018881784.1
SIO_010081: AWJ20_4696
subclass of: SO_0000673
so part of: AWJ20_4696
location: complement(<291263..>292501)
location: region:291263-292501:-1
so has part: feature:291263-292501:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:291263-292501:-1:exon

AWJ20_4696
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: LTV1
locus tag: AWJ20_4696
inference: similar to AA sequence:KEGG_Orthology:K14798
note: Component of the GSE complex; GSE is required for proper sorting of amino acid permease Gap1p; required for ribosomal small subunit export from nucleus; required for growth at low temperature; GO_component: GO:0034448 - EGO complex [Evidence IDA] [PMID 16732272]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 16888326]; GO_component: GO:0031902 - late endosome membrane [Evidence IDA] [PMID 16732272]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16888326]; GO_component: GO:0030688 - preribosome, small subunit precursor [Evidence IDA] [PMID 16738661]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 15611164]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006970 - response to osmotic stress [Evidence IMP] [PMID 15611164]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 15611164]; GO_process: GO:0000056 - ribosomal small subunit export from nucleus [Evidence IGI,IMP] [PMID 16888326]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Ltv1p
translation: MGPKRWIDKKKADTYSLVYRSQEDPLINDPDASQRVLVKLDNLNDAKQKQERRERWAPTPSYSSTGGASKVLTADVLAQDEETFRKEGRRDNEGEAALYGIEYDDSKYDYMQHLKPIGEDPSAVYISKKPTKEKQSFGKDGNLLLKSDYAAANKVNLPSDVLPSKDTLKRTYQDQQNIPDEIAGLQPDMDPRLREVLEALEDEEYVDDDEDVFGQLISSGQKEEIEEDEDEWADYDPDQDFSGQDYSDDEAYDSDNGREMPAKPAKYMVTAKEGEEDWETAFRQFKLDQSRSKAPIDGVSDDEFDEDRDEVGSLSQVPSGRRITKSGRKQKIGAKTDLTGFSMSSSALFRNDGLTLLDNRFDKIEEEYNNDDDEEEEANEPFDMSKERDDLEAIMDDFLDNYVVEGKKMYKK
SIO_010081: AWJ20_4696
subclass of: SO_0000673
so part of: AWJ20_4696
location: complement(291263..292501)
location: region:291263-292501:-1
so has part: feature:291263-292501:-1:exon

XP_018736229.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:291263-292501:-1:exon

AWJ20_4697
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: AVT3
locus tag: AWJ20_4697
so part of: sequence
location: complement(<292889..>295288)
location: region:292889-295288:-1
so has part: feature:292889-295288:-1:exon
subclass of: SO_0000010

30036856
type: Gene
SIO_000068: ncbigene

position:292889:-1
position: 292889
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:295288:-1
position: 295288
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:292889-295288:-1:exon

AWJ20_4697
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: AVT3
locus tag: AWJ20_4697
product: Avt3p
transcript id: XM_018881785.1
SIO_010081: AWJ20_4697
subclass of: SO_0000673
so part of: AWJ20_4697
location: complement(<292889..>295288)
location: region:292889-295288:-1
so has part: feature:292889-295288:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:292889-295288:-1:exon

AWJ20_4697
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: AVT3
locus tag: AWJ20_4697
inference: similar to AA sequence:KEGG_Orthology:K14209
note: Vacuolar transporter; exports large neutral amino acids from the vacuole; member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IMP] [PMID 11274162]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015186 - L-glutamine transmembrane transporter activity [Evidence IGI,IMP] [PMID 11274162]; GO_function: GO:0015188 - L-isoleucine transmembrane transporter activity [Evidence IGI,IMP] [PMID 11274162]; GO_function: GO:0005302 - L-tyrosine transmembrane transporter activity [Evidence IGI,IMP] [PMID 11274162]; GO_function: GO:0005215 - transporter activity [Evidence ISS] [PMID 11274162]; GO_process: GO:0032974 - amino acid transmembrane export from vacuole [Evidence IGI,IMP] [PMID 11274162]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Avt3p
translation: MSSPKPISSSPKSANDSTNSRRGSMAGSPFRQASLRLGSPVTVGSFSQRSLGPGTGASPAAVSDFDDNVFSTDRRSFSLQRKSFGNAINGGVSSGLATSLSTSNAIGNSNGNGTGNGSGNGTLSRAMSSSSASPSNLLGSNIPGSSAVSISDQGSSIIDIDNPDPEIVKVVGRHLVREARGSDFGSDYDGSVGLGSNDGLTAGTSNGAGGNGTAGIGNRATDVVDDDDKFMSLRLQGGDITRQLYNWQREHEEGDAATKRGRSRSFDLPRPAIVGPDGHPIDTKNIKAPGGFRRNFISHNHQTRNRHDPESQNTRRPAFLTRNFIEFLSIYGHFAGEELEDDEDEDDEEDGAGSPFGYGGIGGASVGGSGGAGSGGNGNGDEEQDQDETSALISRPRLSRKKSAHHGPGNATQTKAVMLLLKSFVGTGVLFLPKAYSNGGLLFCSVLLVFVSLISYWCFLLLIESKNRVGGGSFGDIGGVLYGPRMRQLILFSIVISQIGFAAAYIVFVSENLQAFVMAVTNNQTFIRVEVFIFLQLIVFLPLSMIRDIAKLSGTALVADFFILLGLVYLYYYGAHTIAEQGVADVVMFNSESWTLFIGTAIFTYEGIGLIIPIQESMKHPQKFTPVLAGVMVGITLVFVSMGALQYAAYGTKVKTVIILNLPQDSHFVNGVQFLYSAAILLSTPLQLFPAIRIMENWLFVRSGKYNTKIKWQKNVFRFFLTFLTALVAWGGADDLDKFVALIGSFACIPLVYIYPPLLHLKAVKQSWYMVLADVVLAVAGLGAMIYTTAGTVSSWIKS
SIO_010081: AWJ20_4697
subclass of: SO_0000673
so part of: AWJ20_4697
location: complement(292889..295288)
location: region:292889-295288:-1
so has part: feature:292889-295288:-1:exon

XP_018736230.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:292889-295288:-1:exon

AWJ20_4698
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RPC25
locus tag: AWJ20_4698
so part of: sequence
location: complement(<296807..>297172)
location: region:296807-297172:-1
so has part: feature:296807-297172:-1:exon
subclass of: SO_0000010

30036857
type: Gene
SIO_000068: ncbigene

position:296807:-1
position: 296807
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:297172:-1
position: 297172
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:296807-297172:-1:exon

AWJ20_4698
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RPC25
locus tag: AWJ20_4698
product: DNA-directed RNA polymerase III subunit RPC25
transcript id: XM_018881786.1
SIO_010081: AWJ20_4698
subclass of: SO_0000673
so part of: AWJ20_4698
location: complement(<296807..>297172)
location: region:296807-297172:-1
so has part: feature:296807-297172:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:296807-297172:-1:exon

AWJ20_4698
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RPC25
locus tag: AWJ20_4698
inference: similar to AA sequence:KEGG_Orthology:K03022
note: RNA polymerase III subunit C25; required for transcription initiation; forms a heterodimer with Rpc17p; paralog of Rpb7p; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 10611227]; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 3905793]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0001056 - RNA polymerase III activity [Evidence IDA] [PMID 3905793]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IMP] [PMID 15612920]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IDA] [PMID 3905793]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IMP] [PMID 8065349]; GO_process: GO:0006384 - transcription initiation from RNA polymerase III promoter [Evidence IMP] [PMID 15612920]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]
codon start: 1
product: DNA-directed RNA polymerase III subunit RPC25
translation: MIVFRPFVGEILVGWVSSCTEEGINVKMEFFDDIHIPKSLLFEECSFVPREQAWLWKTEESELYIDTNEKIRFRVEQEIFSNQPPKRPGVEEEEQVHNQVPPYSIIGSCQTDGMGLVSWWE
SIO_010081: AWJ20_4698
subclass of: SO_0000673
so part of: AWJ20_4698
location: complement(296807..297172)
location: region:296807-297172:-1
so has part: feature:296807-297172:-1:exon

XP_018736231.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:296807-297172:-1:exon

AWJ20_4699
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SDH1
locus tag: AWJ20_4699
so part of: sequence
location: <299330..>301162
location: region:299330-301162:1
so has part: feature:299330-301162:1:exon
subclass of: SO_0000010

30036858
type: Gene
SIO_000068: ncbigene

position:299330:1
position: 299330
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:301162:1
position: 301162
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:299330-301162:1:exon

AWJ20_4699
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SDH1
locus tag: AWJ20_4699
product: succinate dehydrogenase flavoprotein subunit SDH1
transcript id: XM_018881787.1
SIO_010081: AWJ20_4699
subclass of: SO_0000673
so part of: AWJ20_4699
location: <299330..>301162
location: region:299330-301162:1
so has part: feature:299330-301162:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:299330-301162:1:exon

AWJ20_4699
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SDH1
locus tag: AWJ20_4699
inference: similar to AA sequence:KEGG_Orthology:K00234
note: Flavoprotein subunit of succinate dehydrogenase; couples the oxidation of succinate to the transfer of electrons to ubiquinone as part of the TCA cycle and the mitochondrial respiratory chain; FAD binding to Sdh1p is required for the assembly of the succinate dehydrogenase subunits; SDH1 has a paralog, YJL045W, that arose from the whole genome duplication; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IDA] [PMID 1939170]; GO_component: GO:0005749 - mitochondrial respiratory chain complex II [Evidence IDA] [PMID 9822678]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 2826438]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IDA] [PMID 18279395]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IMP] [PMID 1939170]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]; GO_function: GO:0008177 - succinate dehydrogenase (ubiquinone) activity [Evidence IEA]; GO_function: GO:0008177 - succinate dehydrogenase (ubiquinone) activity [Evidence IDA] [PMID 13445213]; GO_function: GO:0008177 - succinate dehydrogenase (ubiquinone) activity [Evidence IGI,IMP] [PMID 16232921]; GO_function: GO:0008177 - succinate dehydrogenase (ubiquinone) activity [Evidence IMP] [PMID 197391]; GO_function: GO:0008177 - succinate dehydrogenase (ubiquinone) activity [Evidence IMP] [PMID 9730279]; GO_process: GO:0045333 - cellular respiration [Evidence IGI,IMP] [PMID 16232921]; GO_process: GO:0045333 - cellular respiration [Evidence IGI,IMP] [PMID 9730279]; GO_process: GO:0022900 …
codon start: 1
product: succinate dehydrogenase flavoprotein subunit SDH1
translation: MKPIRAQEASKHVSSKYPVIDHEYDAIVVGAGGAGLRAAFGLAEAGFNTACISKLFPTRSHTVAAQGGINAALGNMHPDNWKWHMYDTVKGSDWLGDQDAIHYMTKEAPQSIIELEHYGVPFSRNDEGRIYQRAFGGQSKEFGKGGQAYRTCAVADRTGHALLHSLYGQSLRHNTNFFIEFFAMDLLMQDGECVGVMAYNQEDGTLHRFRAHKTVLATGGYGRAYFSCTSAHTCTGDGLAMVTRAGLPLQDLEFVQFHPTGIYGSGCLITEGSRGEGGYLLNKNGERFMERYAPTAKDLASRDVVSRSMTLEIREGRGVGPENDHIYLQLSHLPAEVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTKWTGEALTVDENGNDKVVPGLYACGEAACVSVHGANRLGANSLLDLVVFGRAVAHTIRDQLTPGTPLKPVSADIGHESIANLDKVRTATGSKSTAEIRLNMQKVMQTDVSVFRTQESLEDGVRRITEVDKSIVDLGTTDRSMIWNSDLVESLELQNLLTCAMQTAYSAVARKESRGAHAREDYPERDDVNWMKHTLSWQDKPGDPVKLGYRNVISTTLDEAECPSVPPAKRVY
SIO_010081: AWJ20_4699
subclass of: SO_0000673
so part of: AWJ20_4699
location: 299330..301162
location: region:299330-301162:1
so has part: feature:299330-301162:1:exon

XP_018736232.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:299330-301162:1:exon

AWJ20_4700
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PSF1
locus tag: AWJ20_4700
so part of: sequence
location: <301515..>302012
location: region:301515-302012:1
so has part: feature:301515-302012:1:exon
subclass of: SO_0000010

30036861
type: Gene
SIO_000068: ncbigene

position:301515:1
position: 301515
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:302012:1
position: 302012
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:301515-302012:1:exon

AWJ20_4700
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PSF1
locus tag: AWJ20_4700
product: Psf1p
transcript id: XM_018881790.1
SIO_010081: AWJ20_4700
subclass of: SO_0000673
so part of: AWJ20_4700
location: <301515..>302012
location: region:301515-302012:1
so has part: feature:301515-302012:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:301515-302012:1:exon

AWJ20_4700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PSF1
locus tag: AWJ20_4700
inference: similar to AA sequence:KEGG_Orthology:K10732
note: Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p); complex is localized to DNA replication origins and implicated in assembly of the DNA replication machinery; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IGI,IMP] [PMID 12730134]; GO_component: GO:0000811 - GINS complex [Evidence IPI] [PMID 12730134]; GO_component: GO:0000811 - GINS complex [Evidence IPI] [PMID 12768207]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IMP] [PMID 12730134]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IMP] [PMID 12768207]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000727 - double-strand break repair via break-induced replication [Evidence IMP] [PMID 20516198]
codon start: 1
product: Psf1p
translation: MYGDIANKLIQDAKLTQMLETLPLYQEELVRSIVREVRDLHRDTEAVLARYGGELPTQDRKVACWIFVQHLCMRRNKRCLLAYQRLRSTRLDAMAWNDVDTMDQEVLNNLNPNEQDYLRDYSELLVDYKGEWVDVDLTGSLEPPRDLFIDVRVLKDAGEIQTEYG
SIO_010081: AWJ20_4700
subclass of: SO_0000673
so part of: AWJ20_4700
location: 301515..302012
location: region:301515-302012:1
so has part: feature:301515-302012:1:exon

XP_018736233.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:301515-302012:1:exon

AWJ20_4701
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RPT1
locus tag: AWJ20_4701
so part of: sequence
location: <303013..>304329
location: region:303013-304329:1
so has part: feature:303013-304329:1:exon
subclass of: SO_0000010

30036862
type: Gene
SIO_000068: ncbigene

position:303013:1
position: 303013
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:304329:1
position: 304329
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:303013-304329:1:exon

AWJ20_4701
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RPT1
locus tag: AWJ20_4701
product: proteasome regulatory particle base subunit RPT1
transcript id: XM_018881791.1
SIO_010081: AWJ20_4701
subclass of: SO_0000673
so part of: AWJ20_4701
location: <303013..>304329
location: region:303013-304329:1
so has part: feature:303013-304329:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:303013-304329:1:exon

AWJ20_4701
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RPT1
locus tag: AWJ20_4701
inference: similar to AA sequence:KEGG_Orthology:K03061
note: ATPase of the 19S regulatory particle of the 26S proteasome; one of six ATPases of the regulatory particle; involved in the degradation of ubiquitinated substrates; required for optimal CDC20 transcription; interacts with Rpn12p and Ubr1p; mutant has aneuploidy tolerance; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IDA] [PMID 9741626]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 7754704]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 19843524]; GO_process: GO:0045732 - positive regulation of protein catabolic process [Evidence IDA] [PMID 15135049]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IMP] [PMID 19412160]; GO_process: GO:0030163 - protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IPI] [PMID 15135049]
codon start: 1
product: proteasome regulatory particle base subunit RPT1
translation: MPPKADWEKYKAPIDGDDEKPEENIVPLSEGDIQVLKTYGAAPYGSALKVIEKDIKDIQGRINEKVGVKESDTGLAAPHLWDIMADKQTISQEQPLQVARCTKIIQSPEDPEKAKYVINVKQIAKFVVSLGDQVSPTDIEEGMRVGVERNKYQIMLPLPPRIDPSVTMMTVEEKPDVTYGDIGGSKEQIEKLREVVELPLLSPERFANLGIDPPKGILLYGPPGTGKTLCARAAANRTDATFIRVIGSELVQKYVGEGARMIRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDIEGRANIFRIHSKSMSVDRDIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLAAVDKVIKGNLKFSSTSQYMQYN
SIO_010081: AWJ20_4701
subclass of: SO_0000673
so part of: AWJ20_4701
location: 303013..304329
location: region:303013-304329:1
so has part: feature:303013-304329:1:exon

XP_018736234.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:303013-304329:1:exon

AWJ20_4702
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4702
so part of: sequence
location: <304726..>304797
location: region:304726-304797:1
so has part: feature:304726-304797:1:exon
subclass of: SO_0000663

30036863
type: Gene
SIO_000068: ncbigene

position:304726:1
position: 304726
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:304797:1
position: 304797
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:304726-304797:1:exon

AWJ20_4702
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_4702
product: tRNA-Gln
SIO_010081: AWJ20_4702
subclass of: SO_0000673
so part of: AWJ20_4702
location: <304726..>304797
location: region:304726-304797:1
so has part: feature:304726-304797:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:304726-304797:1:exon

AWJ20_4703
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: DBR1
locus tag: AWJ20_4703
so part of: sequence
location: complement(<304987..>306528)
location: region:304987-306528:-1
so has part: feature:304987-306528:-1:exon
subclass of: SO_0000010

30036864
type: Gene
SIO_000068: ncbigene

position:304987:-1
position: 304987
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:306528:-1
position: 306528
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:304987-306528:-1:exon

AWJ20_4703
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: DBR1
locus tag: AWJ20_4703
product: Dbr1p
transcript id: XM_018881792.1
SIO_010081: AWJ20_4703
subclass of: SO_0000673
so part of: AWJ20_4703
location: complement(<304987..>306528)
location: region:304987-306528:-1
so has part: feature:304987-306528:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:304987-306528:-1:exon

AWJ20_4703
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: DBR1
locus tag: AWJ20_4703
inference: similar to AA sequence:KEGG_Orthology:K18328
note: RNA lariat debranching enzyme; catalyzes debranching of lariat introns formed during pre-mRNA splicing; required for efficient Ty1 transposition; knockdown of human homolog Dbr1 rescues toxicity of RNA-binding proteins TDP-43 and FUS which are implicated in amyotrophic lateral sclerosis (ALS), suggests potential therapeutic target for ALS and related TDP-43 proteinopathies; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 1850323]; GO_function: GO:0008419 - RNA lariat debranching enzyme activity [Evidence IDA,IMP] [PMID 1850323]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]; GO_process: GO:0006401 - RNA catabolic process [Evidence IDA,IMP] [PMID 1850323]; GO_process: GO:0006397 - mRNA processing [Evidence IEA,IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 24919400]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 9055077]; GO_process: GO:0016074 - snoRNA metabolic process [Evidence IMP] [PMID 9740128]; GO_process: GO:0032197 - transposition, RNA-mediated [Evidence IMP] [PMID 10652222]
codon start: 1
product: Dbr1p
translation: MMRKKSFNIVVEGCCHGELDSIYEAIGKLNKPVDLVLICGDFQALRNEQDMNCIAMPPKYRKLGDFHKYYTGEKKAPYLTLFIGGNHESSNYLWELFYGGWAAPNIYYMGAASVVNFNGLKIGGLSGIYNHQHFHWHHLEKLPYNGSSERSVYHVRKFDTMKLLMLRQGLNVMMSHDWPARIEHFGDLKKLLRFKKHLARDVDTGRLGSPAAGSILQNVRPDYWFSAHLHVRYEALVKHEPHEEIVNETKNATKLIEEESKNEDEIDLEELLDETDNDKKNEDEIELEGLLDETANDNEANKSNVLHAKEETFQKEALNSDEIDLSSELSLEPSTDQPVKSEAPNNVNKVGAPETHFLALDKCLPGRRFIEHITIEVETRPEKRKRRPSTLDDGDSAQVTEEETGLSYDPEWLAITRAFHKYFKTSSNQTVDELPHVNDIDSLNEHISTELQWVNENIVDKDLLTIPNNFKVQTETPAAPTSSWKNQQPPEIRNNQTEDFCRLLELDNRIYHL
SIO_010081: AWJ20_4703
subclass of: SO_0000673
so part of: AWJ20_4703
location: complement(304987..306528)
location: region:304987-306528:-1
so has part: feature:304987-306528:-1:exon

XP_018736235.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:304987-306528:-1:exon

AWJ20_4704
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: BFR2
locus tag: AWJ20_4704
so part of: sequence
location: <307101..>308591
location: region:307101-308591:1
so has part: feature:307101-308591:1:exon
subclass of: SO_0000010

30036865
type: Gene
SIO_000068: ncbigene

position:307101:1
position: 307101
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:308591:1
position: 308591
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:307101-308591:1:exon

AWJ20_4704
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: BFR2
locus tag: AWJ20_4704
product: Bfr2p
transcript id: XM_018881793.1
SIO_010081: AWJ20_4704
subclass of: SO_0000673
so part of: AWJ20_4704
location: <307101..>308591
location: region:307101-308591:1
so has part: feature:307101-308591:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:307101-308591:1:exon

AWJ20_4704
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: BFR2
locus tag: AWJ20_4704
inference: similar to AA sequence:KEGG_Orthology:K14782
note: Essential protein that is a component of 90S preribosomes; may be involved in rRNA processing; multicopy suppressor of sensitivity to Brefeldin A; expression is induced during lag phase and also by cold shock; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15590835]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 15590835]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]
codon start: 1
product: Bfr2p
translation: MPSLADQLAKLANPEPVDFDPEDFENRNPDDDSGNELEVNKAATEHYLEVSKSSLRNDELNVDGVKYVGKRVKRDALFEQNGGHSEESDDDDEEEVEGEDDSEEEEEEEEDSEENDVVNGNESEEEDEMQSDDDISEKKEQRKLNGSASDGVPEDEVAKRAQLQELIDAERKNLAGRLSNTAKADAEKGSAVQHQLNIYESIIDCRIKLQKSIQAVNELPISRSSAEKFTTEATPELISKNKESVFDLLNKVSQLRLRLLQKDGLTDLPKKLSKKRSLTTAFENAQSLDKPLYGYRESVLTKWSQKVQSSTGSMALQSSKFKSLNQTAAIQVSTVLADMERLVKRTKLNRSNVKALGLETVAEDQEKQAKTVDIQEEDHIFDDTDFYRQILKELVDRRMADSGNTAGLKWTVTKAKVKKNIDTKASKGRKLRYTVQEKVQGFDVPRHTTTWTDEQIDDLFASLLGQKIKIDENDNSDAEEDKPEEEPENDGLQIFG
SIO_010081: AWJ20_4704
subclass of: SO_0000673
so part of: AWJ20_4704
location: 307101..308591
location: region:307101-308591:1
so has part: feature:307101-308591:1:exon

XP_018736236.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:307101-308591:1:exon

AWJ20_4705
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MCR1
locus tag: AWJ20_4705
so part of: sequence
location: complement(<311296..>311814)
location: region:311296-311814:-1
so has part: feature:311296-311814:-1:exon
subclass of: SO_0000010

30036866
type: Gene
SIO_000068: ncbigene

position:311296:-1
position: 311296
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:311814:-1
position: 311814
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:311296-311814:-1:exon

AWJ20_4705
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MCR1
locus tag: AWJ20_4705
product: Mcr1p
transcript id: XM_018881794.1
SIO_010081: AWJ20_4705
subclass of: SO_0000673
so part of: AWJ20_4705
location: complement(<311296..>311814)
location: region:311296-311814:-1
so has part: feature:311296-311814:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:311296-311814:-1:exon

AWJ20_4705
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MCR1
locus tag: AWJ20_4705
inference: similar to AA sequence:KEGG_Orthology:K00326
note: Mitochondrial NADH-cytochrome b5 reductase; involved in ergosterol biosynthesis; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031307 - integral component of mitochondrial outer membrane [Evidence IDA] [PMID 16689936]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 8001120]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 8001120]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004128 - cytochrome-b5 reductase activity, acting on NAD(P)H [Evidence IEA]; GO_function: GO:0004128 - cytochrome-b5 reductase activity, acting on NAD(P)H [Evidence IDA] [PMID 8001120]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 11420140]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IDA] [PMID 10622712]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]
codon start: 1
product: Mcr1p
translation: MSTHIHGLKPNDVLSFKGPLPKYQWTPNAHKEIALLGGGTGITPLYQLLQAIHKDPNDKTKVNLFYANVTKEDVLIRDEIEALIKDRPDQFKVTYFLDKPPSGWTGETGYISKEFLSKNLPKPDSENIKIFVCGPPPFYNALSGPKVSPQDQGELTGALKELGYNKDQVYKF
SIO_010081: AWJ20_4705
subclass of: SO_0000673
so part of: AWJ20_4705
location: complement(311296..311814)
location: region:311296-311814:-1
so has part: feature:311296-311814:-1:exon

XP_018736237.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:311296-311814:-1:exon

AWJ20_4706
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4706
so part of: sequence
location: <314138..>314962
location: region:314138-314962:1
so has part: feature:314138-314962:1:exon
subclass of: SO_0000010

30036867
type: Gene
SIO_000068: ncbigene

position:314138:1
position: 314138
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:314962:1
position: 314962
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:314138-314962:1:exon

AWJ20_4706
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4706
product: NADHX dehydratase
transcript id: XM_018881795.1
SIO_010081: AWJ20_4706
subclass of: SO_0000673
so part of: AWJ20_4706
location: <314138..>314962
location: region:314138-314962:1
so has part: feature:314138-314962:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:314138-314962:1:exon

AWJ20_4706
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4706
inference: similar to AA sequence:KEGG_Orthology:K17757
note: NADHX dehydratase; converts (S)-NADHX to NADH in an ATP-dependent manner; homologous to Carkd in mammals, and the C-terminal domain of YjeF in E.coli; enzyme is widespread in eukaryotes, prokaryotes and archaea; YKL151C promoter contains STREs (stress response elements) and expression is induced by heat shock or methyl methanesulfonate; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0047453 - ATP-dependent NAD(P)H-hydrate dehydratase activity [Evidence IEA,IEA]; GO_function: GO:0047453 - ATP-dependent NAD(P)H-hydrate dehydratase activity [Evidence IDA] [PMID 21994945]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0046496 - nicotinamide nucleotide metabolic process [Evidence IEA]; GO_process: GO:0046496 - nicotinamide nucleotide metabolic process [Evidence IDA] [PMID 21994945]
codon start: 1
product: NADHX dehydratase
translation: MASTLVGADMSHVICEKYAGDVIKSYSPNLIVHPYLFETEHLPSGHSIQNVVEKVCSVLDRIHVVVIGPGLGRDKTMLETTAAIIQEAKKRKLPIVIDADGLYLIQNQPDLIKGYEKAILTPNVVEFQRLCKALEIDDAGGDDPASAPKVSKLATTFGGLTILEKGKLDNISNGHTTISNDISGGPKRVSGQGDTLSGSIAAFLAWQLAYEQKLWDTEPIKEAQDSRDLTLLAVFAASSITRTASALAYKNHGRALLTSDISDSVGAAFKQLFE
SIO_010081: AWJ20_4706
subclass of: SO_0000673
so part of: AWJ20_4706
location: 314138..314962
location: region:314138-314962:1
so has part: feature:314138-314962:1:exon

XP_018736238.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:314138-314962:1:exon

AWJ20_4707
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4707
so part of: sequence
location: complement(<315195..>315932)
location: region:315195-315932:-1
so has part: feature:315195-315932:-1:exon
subclass of: SO_0000010

30036868
type: Gene
SIO_000068: ncbigene

position:315195:-1
position: 315195
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:315932:-1
position: 315932
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:315195-315932:-1:exon

AWJ20_4707
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4707
product: hypothetical protein
transcript id: XM_018881796.1
SIO_010081: AWJ20_4707
subclass of: SO_0000673
so part of: AWJ20_4707
location: complement(<315195..>315932)
location: region:315195-315932:-1
so has part: feature:315195-315932:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:315195-315932:-1:exon

AWJ20_4707
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4707
codon start: 1
product: hypothetical protein
translation: MSARQLSDIEKKSPQIRSRSDELWKLFITRDFPDRPVSESHNRRAYAQYYKEKEAHLKNASSRLRESLEKIKQEKASRTITSLEVDPQSLRAAARRKASSSAPAGSRLIQKAFNSARTKGPLFSSRNTKFASMGMGSINGLPPGIPGAIRAPRSIPPPAMRNVPTPSPLSMPLNARVRPTGPVSPLKPAVATKPHPTKQTAQESAIINSPDNRKKPKIDTPPTTPTIAPATRKRPNSSIFLQRRK
SIO_010081: AWJ20_4707
subclass of: SO_0000673
so part of: AWJ20_4707
location: complement(315195..315932)
location: region:315195-315932:-1
so has part: feature:315195-315932:-1:exon

XP_018736239.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:315195-315932:-1:exon

AWJ20_4708
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CBF1
locus tag: AWJ20_4708
so part of: sequence
location: complement(<316979..>317716)
location: region:316979-317716:-1
so has part: feature:316979-317716:-1:exon
subclass of: SO_0000010

30036869
type: Gene
SIO_000068: ncbigene

position:316979:-1
position: 316979
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:317716:-1
position: 317716
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:316979-317716:-1:exon

AWJ20_4708
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CBF1
locus tag: AWJ20_4708
product: Cbf1p
transcript id: XM_018881797.1
SIO_010081: AWJ20_4708
subclass of: SO_0000673
so part of: AWJ20_4708
location: complement(<316979..>317716)
location: region:316979-317716:-1
so has part: feature:316979-317716:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:316979-317716:-1:exon

AWJ20_4708
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CBF1
locus tag: AWJ20_4708
inference: similar to AA sequence:KEGG_Orthology:K09104
note: Basic helix-loop-helix (bHLH) protein; forms homodimer to bind E-box consensus sequence CACGTG present at MET gene promoters and centromere DNA element I (CDEI); affects nucleosome positioning at this motif; associates with other transcription factors such as Met4p and Isw1p to mediate transcriptional activation or repression; associates with kinetochore proteins, required for chromosome segregation; protein abundance increases in response to DNA replication stress; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IEA,IEA]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IDA] [PMID 9407032]; GO_component: GO:0000776 - kinetochore [Evidence IPI] [PMID 11070082]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IMP] [PMID 20935143]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IPI] [PMID 8665859]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 7891681]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 9894911]; GO_function: GO:0001078 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription [Evidence IDA] [PMID 15302821]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity invo…
codon start: 1
product: Cbf1p
translation: MDKPPSKRARIEDPSSANIDDALLKNDQQTAASEAVVPTTEAQQGETHDASNELENKMATALAAVAAAASANGGEYPSVVSRQAQTSASPYDHSRPNGSASAGVDGHEPTISVGDSSFKPSAGSEEWHKIRRDNHKEVERRRREAINKGISELATIVPDCEKHKGQILQKTVDYIKKLKDNEQRNMEKLTLEKLLTEQAISELSATNKALKQELAQAWKEVEHWKQACGASTGADASKSADAGSK
SIO_010081: AWJ20_4708
subclass of: SO_0000673
so part of: AWJ20_4708
location: complement(316979..317716)
location: region:316979-317716:-1
so has part: feature:316979-317716:-1:exon

XP_018736240.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:316979-317716:-1:exon

AWJ20_4709
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4709
so part of: sequence
location: <318793..>318864
location: region:318793-318864:1
so has part: feature:318793-318864:1:exon
subclass of: SO_0000663

30036870
type: Gene
SIO_000068: ncbigene

position:318793:1
position: 318793
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:318864:1
position: 318864
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:318793-318864:1:exon

AWJ20_4709
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_4709
product: tRNA-Asp
SIO_010081: AWJ20_4709
subclass of: SO_0000673
so part of: AWJ20_4709
location: <318793..>318864
location: region:318793-318864:1
so has part: feature:318793-318864:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:318793-318864:1:exon

AWJ20_4710
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: BRN1
locus tag: AWJ20_4710
so part of: sequence
location: complement(<319055..>321037)
location: region:319055-321037:-1
so has part: feature:319055-321037:-1:exon
subclass of: SO_0000010

30036872
type: Gene
SIO_000068: ncbigene

position:319055:-1
position: 319055
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:321037:-1
position: 321037
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:319055-321037:-1:exon

AWJ20_4710
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: BRN1
locus tag: AWJ20_4710
product: Brn1p
transcript id: XM_018881799.1
SIO_010081: AWJ20_4710
subclass of: SO_0000673
so part of: AWJ20_4710
location: complement(<319055..>321037)
location: region:319055-321037:-1
so has part: feature:319055-321037:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:319055-321037:-1:exon

AWJ20_4710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: BRN1
locus tag: AWJ20_4710
inference: similar to AA sequence:KEGG_Orthology:K06676
note: Subunit of the condensin complex; required for chromosome condensation and for clustering of tRNA genes at the nucleolus; may influence multiple aspects of chromosome transmission; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0000796 - condensin complex [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000799 - nuclear condensin complex [Evidence IPI,ISS] [PMID 10749931]; GO_component: GO:0000799 - nuclear condensin complex [Evidence IDA] [PMID 10811823]; GO_component: GO:0000799 - nuclear condensin complex [Evidence IPI,ISS] [PMID 7698648]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10749931]; GO_function: GO:0003682 - chromatin binding [Evidence IGI] [PMID 11864994]; GO_process: GO:0006268 - DNA unwinding involved in DNA replication [Evidence IMP] [PMID 24062159]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0030261 - chromosome condensation [Evidence IEA]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IEA]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IGI,IMP] [PMID 10749931]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IMP] [PMID 10811823]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IMP] [PMID 7698648]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IMP] [PMID 10749931]; GO_process: GO:0070058 - tRNA gene clustering [Evidence IMP] [PMID 18708579]
codon start: 1
product: Brn1p
translation: MSLLRDGDGINFQRASYTLDGCVKIYTSRIDSVATETGKLLSGLADAKKNRGKGGDDEEVEGDDEGHEDEDGNDEESSKKRKRRPRAENTLVEEYSQLEVKKLDLELNIDPLFRKMCADFDEGGAKGLLLNSLMIDKTGRVVFDGDANDGDDDEDEEADKDEVDANTSTSSSGSSKDKTLNPHFQGDTIDMDLLRSKYFSNLDDLDELEICPSLPGIYDALNDPALLNSQLVKELQEMSIKDRADYRPFAESLDDMALGEDGYGDAPPDMDYDDMPELIANDDDEASFAVGKGSTTVIPYTGATSVNVMSGRDTDILSYFDETLKKNWAGPEHWKIQKLKDTTVAGIKTETSKEIKKPKKTKEQLVIDFLSDEGAIDESELFASGGNINLPKSQRKSKDYNLLPDDRQFSSKKLIKLFSKPKGNVISNKLFGGAITGNQTSNDSEGIQENDENFWAKQYQQPEDGKSGSDYNQNFFNDDDYDGMGIPDIGGDEDDGLPLDAGESLYRDGPTQLLAKGQRARPDYVNYAKFAKRVNVKLLKDNIWSVMKLPEPSSDETANEPKIDEVDDDDVDPSTGKPLRKPSLAPAAEFTERKFTDLAKELKQVYPAQQMSEISTSFCFICVLHLANERGLIIEDNEMHNDLTIKWDPSVPRGTAINSF
SIO_010081: AWJ20_4710
subclass of: SO_0000673
so part of: AWJ20_4710
location: complement(319055..321037)
location: region:319055-321037:-1
so has part: feature:319055-321037:-1:exon

XP_018736241.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:319055-321037:-1:exon

AWJ20_4711
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: IME4
locus tag: AWJ20_4711
so part of: sequence
location: <321891..>323192
location: region:321891-323192:1
so has part: feature:321891-323192:1:exon
subclass of: SO_0000010

30036873
type: Gene
SIO_000068: ncbigene

position:321891:1
position: 321891
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:323192:1
position: 323192
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:321891-323192:1:exon

AWJ20_4711
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: IME4
locus tag: AWJ20_4711
product: mRNA (N6-adenosine)-methyltransferase
transcript id: XM_018881800.1
SIO_010081: AWJ20_4711
subclass of: SO_0000673
so part of: AWJ20_4711
location: <321891..>323192
location: region:321891-323192:1
so has part: feature:321891-323192:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:321891-323192:1:exon

AWJ20_4711
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: IME4
locus tag: AWJ20_4711
codon start: 1
product: mRNA (N6-adenosine)-methyltransferase
translation: MSSSSSSTIFSLNQALLYSPNTTINLSSYQNSIETPSSDIGSRIASHHLRSVSVTGSLDGEMSVNDNSLEEIVVSFLINHKPKLFPALPFGINVLLRTINQVHNCHISSDAFDNACLNLAMQIPSSFVVSKMCSQNASYSSKYQLEFYDPEMLILWSSSSLSTIFTRSSASSSGSSTLDCSISVIADHDTPNRNLNENIAYADNSKLYQTMLSLITNDDSYYAQMRQTLANLLSEPTQRNILYKEQILSASSTKPYVEICPYPKRNECLLQGRLDCLRKIHFEPVITSNTDVSIGDCSYLDTCFKGKGCKYVHYRITYPDTFQRGQARQPQEAKQNQGPLFHIAERDYSKPKVGQNISEKYLVLITRQIHKCLLTGLFRLLPSGFAAISGDLTSAFSVTLVSSLPTVSAIEPQTTDLDNQFNLTDFQLLGIYI
SIO_010081: AWJ20_4711
subclass of: SO_0000673
so part of: AWJ20_4711
location: 321891..323192
location: region:321891-323192:1
so has part: feature:321891-323192:1:exon

XP_018736242.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:321891-323192:1:exon

AWJ20_4712
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CUL3
locus tag: AWJ20_4712
so part of: sequence
location: <324452..>327079
location: region:324452-327079:1
so has part: feature:324452-327079:1:exon
subclass of: SO_0000010

30036874
type: Gene
SIO_000068: ncbigene

position:324452:1
position: 324452
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:327079:1
position: 327079
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:324452-327079:1:exon

AWJ20_4712
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CUL3
locus tag: AWJ20_4712
product: cullin CUL3
transcript id: XM_018881801.1
SIO_010081: AWJ20_4712
subclass of: SO_0000673
so part of: AWJ20_4712
location: <324452..>327079
location: region:324452-327079:1
so has part: feature:324452-327079:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:324452-327079:1:exon

AWJ20_4712
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CUL3
locus tag: AWJ20_4712
inference: similar to AA sequence:KEGG_Orthology:K03869
note: Ubiquitin-protein ligase; forms a complex with Elc1p that polyubiquitylates monoubiquitylated RNA polymerase II to trigger its proteolysis; cullin family member with similarity to Cdc53p and human CUL3; GO_component: GO:0031463 - Cul3-RING ubiquitin ligase complex [Evidence IDA] [PMID 16675952]; GO_component: GO:0031463 - Cul3-RING ubiquitin ligase complex [Evidence IMP] [PMID 17296727]; GO_component: GO:0031461 - cullin-RING ubiquitin ligase complex [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0031625 - ubiquitin protein ligase binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 12676951]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 16675952]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 17296727]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IC] [PMID 12676951]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence ISS] [PMID 9531531]
codon start: 1
product: cullin CUL3
translation: MATRGGRARIRAPKKSLADEANFDVSWNEKLSPAIREIYDKNASKRSFEELYRTAYYLVLKKHGKRLYESTKQQIREHLENKVVGSLTRYIQDHGQNSGSGTSVAAGGDDNVDGTIRENGTELATTENATKTTPKGTLDLESVPVDFLKQVRRYWDDSCLCMKMTSDILMYLDRVYVQDAKVPLIYDAGLILFRDAVIFNQKLPVGSIIDNIIINEVINERNGQIIDRVAIKATVNMLESLRDSHNPLFTSPIRTAQNDGRPYDYLKNGTDGLIDLDSGFGSVYTGEFEPKFLASSEEYYSTTARNVLESTPDAHVYIQKVKFWLEEEAQRCNRYLSIHTLDKVITLIEDVLITQRISEVLELPTTGLVSWIENEQYEDLSLAYQLVGRVDKTYKCICELVKKDLLIAGREANNVAIRSSEEAKASKGRPKEKQDAANPASGAAGAGATATLNPTTIAINWVEQVIRLKDKYDKILIQCFENQQNIRIANEESFILFVNENPKVAEFLSLFIDENLKRTIKGKSDEEIEDTLEKAITLFRYIADKDLFETYYKVHLAKRLLNGKSVSDEVERNMIGKIKREVGTAFTSKLEGMFKDMRISKDINNEFKAAQSQLQQSDSGNKGLADIQVNVLTSTFWPSGIVNTQAKFVLPPVVDEAKQRFEKFYLGRHTGRVLAWNMSMGTADIKARFKKRTHEINLSTVAMVVLMLFNELPEGHYLTYEDIQNTTGIATSELTRHLQSIAVAPRTRLLRKEPMSRDVKPTDKFYFNDKFESPMARIKVLAVSAKSKAENDSERKETLDRVDQSRKYETDAAIVRIMKSRRTLEHVQLIADATRQLSSRFKPDPILIKQRIDALLEREYLERDPERRNVYNYLA
SIO_010081: AWJ20_4712
subclass of: SO_0000673
so part of: AWJ20_4712
location: 324452..327079
location: region:324452-327079:1
so has part: feature:324452-327079:1:exon

XP_018736243.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:324452-327079:1:exon

AWJ20_4713
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4713
so part of: sequence
location: complement(<327291..>328283)
location: region:327291-328283:-1
so has part: feature:327291-328283:-1:exon
subclass of: SO_0000010

30036875
type: Gene
SIO_000068: ncbigene

position:327291:-1
position: 327291
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:328283:-1
position: 328283
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:327291-328283:-1:exon

AWJ20_4713
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4713
product: hypothetical protein
transcript id: XM_018881802.1
SIO_010081: AWJ20_4713
subclass of: SO_0000673
so part of: AWJ20_4713
location: complement(<327291..>328283)
location: region:327291-328283:-1
so has part: feature:327291-328283:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:327291-328283:-1:exon

AWJ20_4713
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4713
codon start: 1
product: hypothetical protein
translation: MSSLSPIPTSAAERLIRNPHSLPRVPTALANIISQNKHSDRIKHHAEQAYFIRRAKLENQRSERILAAATTNGTSLSGSQYRDANATPSPPSSPILDAVSPTNSRPRVFTHRRNSDTVTSTSVFSPSTQPIDIRRRSSSFTGHNGSPPRSGRPSPSRASRSLSFSHVNNRRLSSIDPRESTTALFNSGVYFIPESPEEDELISLLYPLDATYHGPPVSSSSGPGSPPPNLQHNMAFSSRIFSKKPEERLKQRCYFTKRPAPSWKSRNFEPIKQGKTWVSAHPGWHRFMRNEYKVNGQEDTWREERSRFLQEFRRERQFQKQSKRRMSSHL
SIO_010081: AWJ20_4713
subclass of: SO_0000673
so part of: AWJ20_4713
location: complement(327291..328283)
location: region:327291-328283:-1
so has part: feature:327291-328283:-1:exon

XP_018736244.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:327291-328283:-1:exon

AWJ20_4714
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RPS17B
locus tag: AWJ20_4714
so part of: sequence
location: complement(<330502..>330918)
location: region:330502-330918:-1
so has part: feature:330502-330918:-1:exon
subclass of: SO_0000010

30036876
type: Gene
SIO_000068: ncbigene

position:330502:-1
position: 330502
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:330918:-1
position: 330918
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:330502-330918:-1:exon

AWJ20_4714
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RPS17B
locus tag: AWJ20_4714
product: ribosomal 40S subunit protein S17B
transcript id: XM_018881803.1
SIO_010081: AWJ20_4714
subclass of: SO_0000673
so part of: AWJ20_4714
location: complement(<330502..>330918)
location: region:330502-330918:-1
so has part: feature:330502-330918:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:330502-330918:-1:exon

AWJ20_4714
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RPS17B
locus tag: AWJ20_4714
inference: similar to AA sequence:KEGG_Orthology:K02962
note: Ribosomal protein 51 (rp51) of the small (40s) subunit; homologous to mammalian ribosomal protein S17, no bacterial homolog; RPS17B has a paralog, RPS17A, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IBA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence NAS] [PMID 9559554]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence NAS] [PMID 9559554]; GO_process: GO:0002181 - cytoplasmic translation [Evidence NAS] [PMID 9559554]; GO_process: GO:0000028 - ribosomal small subunit assembly [Evidence IMP] [PMID 3915776]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006414 - translational elongation [Evidence IBA]
codon start: 1
product: ribosomal 40S subunit protein S17B
translation: MGRVRTKTVKRAAKQIIEGYYPKLTLDFETNKRLADEIAFIPSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERRDQYVPEVSALDVSQTENGLEVDADTANLLKTLGFAKLPVSVVHVSQQAPERRFRKRN
SIO_010081: AWJ20_4714
subclass of: SO_0000673
so part of: AWJ20_4714
location: complement(330502..330918)
location: region:330502-330918:-1
so has part: feature:330502-330918:-1:exon

XP_018736245.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:330502-330918:-1:exon

AWJ20_4715
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ADA2
locus tag: AWJ20_4715
so part of: sequence
location: <332839..>334332
location: region:332839-334332:1
so has part: feature:332839-334332:1:exon
subclass of: SO_0000010

30036877
type: Gene
SIO_000068: ncbigene

position:332839:1
position: 332839
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:334332:1
position: 334332
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:332839-334332:1:exon

AWJ20_4715
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ADA2
locus tag: AWJ20_4715
product: chromatin-binding transcription regulator ADA2
transcript id: XM_018881804.1
SIO_010081: AWJ20_4715
subclass of: SO_0000673
so part of: AWJ20_4715
location: <332839..>334332
location: region:332839-334332:1
so has part: feature:332839-334332:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:332839-334332:1:exon

AWJ20_4715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ADA2
locus tag: AWJ20_4715
inference: similar to AA sequence:KEGG_Orthology:K11314
codon start: 1
product: chromatin-binding transcription regulator ADA2
translation: MIVEQHAYPIFDDDWGADEELLLLEGAELQGLGNWQDISDHIGGRSREEVDEHYNKVYLQSATYPLPEMNKKFNISPAEFAEKKRQRLEDRRKNAPALPIPKQKPTASVPACHEVQGYMPGRLEFEQETENEAEMSVKDMVFDPEEPSQEVNFKLTILDIYNSRLTTRAERKRSILAHGLLDYRKNAGIEKKRTKEERDLVNKLKPFARMMTRKDYEMLTDSMLTELRCRRRIAELQEYRRNGIRTLEAAAKYERDKVTRINALNRAGIILGGGMTPSSNSTILNNSNIINGTSLTRNSLGSKPGTPGPLNSTSSIDSTSTVNDSTSSTNGSSNVNNTAVSVMSPLGYKFSPSVFTNISESERSSPFGSLSLPGTSSSTALNGGSGSGLGSTGGSVTPTATTNGTTLKIRKSISMTTPPLDISQAADVELLSPQEQLLCSQLRILPKPYLAIKETLFRELVRTGGILKRKTARELIKIDAAKTGRIYEFFQSQNWLS
SIO_010081: AWJ20_4715
subclass of: SO_0000673
so part of: AWJ20_4715
location: 332839..334332
location: region:332839-334332:1
so has part: feature:332839-334332:1:exon

XP_018736246.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:332839-334332:1:exon

AWJ20_4716
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4716
so part of: sequence
location: complement(<334548..>335276)
location: region:334548-335276:-1
so has part: feature:334548-335276:-1:exon
subclass of: SO_0000010

30036878
type: Gene
SIO_000068: ncbigene

position:334548:-1
position: 334548
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:335276:-1
position: 335276
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:334548-335276:-1:exon

AWJ20_4716
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4716
product: hypothetical protein
transcript id: XM_018881805.1
SIO_010081: AWJ20_4716
subclass of: SO_0000673
so part of: AWJ20_4716
location: complement(<334548..>335276)
location: region:334548-335276:-1
so has part: feature:334548-335276:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:334548-335276:-1:exon

AWJ20_4716
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4716
inference: similar to AA sequence:KEGG_Orthology:K14397
codon start: 1
product: hypothetical protein
translation: MTTVTETARKTTILPPLPKPFTEKQAPTIRLYPVSNYTFDVKEAQPEEDNSVTGRLQRLQEQYETSGMRRTCEGILVCHEHGHPYVLLLQIANTFFKLPGDYIQPDQDEITGFKQRLNERLAPAKDSEHASDPINSEWEIGDCITQWWRPNFETFMYPFIPPHISRPKECKKMFLIHLPKHKVLSVPQNMKLLAVPLFELYDNATRYGNQLAAIPLYLSRYNFEFVDSDDNVIATYPASNAN
SIO_010081: AWJ20_4716
subclass of: SO_0000673
so part of: AWJ20_4716
location: complement(334548..335276)
location: region:334548-335276:-1
so has part: feature:334548-335276:-1:exon

XP_018736247.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:334548-335276:-1:exon

AWJ20_4717
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: UTP6
locus tag: AWJ20_4717
so part of: sequence
location: complement(<337729..>338937)
location: region:337729-338937:-1
so has part: feature:337729-338937:-1:exon
subclass of: SO_0000010

30036879
type: Gene
SIO_000068: ncbigene

position:337729:-1
position: 337729
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:338937:-1
position: 338937
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:337729-338937:-1:exon

AWJ20_4717
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: UTP6
locus tag: AWJ20_4717
product: Utp6p
transcript id: XM_018881806.1
SIO_010081: AWJ20_4717
subclass of: SO_0000673
so part of: AWJ20_4717
location: complement(<337729..>338937)
location: region:337729-338937:-1
so has part: feature:337729-338937:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:337729-338937:-1:exon

AWJ20_4717
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: UTP6
locus tag: AWJ20_4717
inference: similar to AA sequence:KEGG_Orthology:K14557
note: Nucleolar protein; component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0034388 - Pwp2p-containing subcomplex of 90S preribosome [Evidence IDA] [PMID 15231838]; GO_component: GO:0034388 - Pwp2p-containing subcomplex of 90S preribosome [Evidence IDA] [PMID 17515605]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12150911]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0030515 - snoRNA binding [Evidence IPI] [PMID 12068309]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12068309]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]
codon start: 1
product: Utp6p
translation: MSDKVRFYLEQSVAELEDLRKKELFTKQELAVIMRKRTDHEHRISGRTVKPRDFLKYAEYEINVERLRKKRVKRLGNKDVGGKSGISDWAGPRRIMFIFDRSTKRFPGEIQLWLQYLEYAKQQKAIHVINKIFTTMLQLHPTKPKLWILAAKHESDENASMKAARYILQRSLRFNYDSELLWYEYIKLELIYVSKILARRKLLGLDLDTEEQQAQKEQDEEDEESEAHIELPDIKEQVKDDLKALPEADMSMLGNPQTNPALRGDVALAIYDASMERAKTVDAKYDFSLKIIELFDSFIDLDRAHLSKHVIDYLSHTQASPKTLFLSTTLPVRYVSHDDPTFPDMIKLMITKYNKSLSLEEKTPELKQHLREFLTSKYLEPTLEPALDQNIRLVLQSFTKKL
SIO_010081: AWJ20_4717
subclass of: SO_0000673
so part of: AWJ20_4717
location: complement(337729..338937)
location: region:337729-338937:-1
so has part: feature:337729-338937:-1:exon

XP_018736248.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:337729-338937:-1:exon

AWJ20_4718
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: AMF1
locus tag: AWJ20_4718
so part of: sequence
location: <339974..>341797
location: region:339974-341797:1
so has part: feature:339974-341797:1:exon
subclass of: SO_0000010

30036880
type: Gene
SIO_000068: ncbigene

position:339974:1
position: 339974
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:341797:1
position: 341797
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:339974-341797:1:exon

AWJ20_4718
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: AMF1
locus tag: AWJ20_4718
product: Amf1p
transcript id: XM_018881807.1
SIO_010081: AWJ20_4718
subclass of: SO_0000673
so part of: AWJ20_4718
location: <339974..>341797
location: region:339974-341797:1
so has part: feature:339974-341797:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:339974-341797:1:exon

AWJ20_4718
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: AMF1
locus tag: AWJ20_4718
note: Putative paralog of ATR1; but not required for boron tolerance; member of the DHA2 family of drug:H+ antiporters; YOR378W is not an essential gene; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Amf1p
translation: MPDNEQNQNGDSFHEDRPVVTNRPSHTSAIPTSNPPSSPPSIRHVESETNQLWSRMSIKMSVVEQQNSGLNSEIASENHVDLYHQGEAEETDLDVASRVPTNMSALSELAMKRPACFRSTFHEVVCVFILTMAPVLSSTNNGVLYIALPRIGKEFRVADGTLSWTMSASSLATGAFLLLMGQLADTIGRRRMVLFSYAFYTLMSLGAGLCKNYIGFTILRALQGIASAAGVTAAVGILGSEYLPGKRRNFALAAFSSGAPLGFVFGLLAGGISTEILNWESSLYFFAMVYFVLTIIGFFVIPKSDPRFDRRFLYESLQKIDYVGALLTISGFTLFVFALSQWSSTAHGWKTPYILVCLFLGALIIALLCVYEGYVPARPLMPMHIWIAPGFALCMATIICGWILFTGVVSYYATLYFQNIRHTSPILTTACFLPMAIGGIMVNVFAGLVLHKISGRILLIVAMASFTISALLWSFVGEHTLYWALPFPGLLLVVVGADLAYNVCNMHALSTVDKSLQSTAAGVFNTCLQLATALGLAISSSVVAAVVPDQLNATPSELLKGYRAGYWFATGVGGLGLIFSFFLKIGTQGGRTKRKTVSEKDPAPSDV
SIO_010081: AWJ20_4718
subclass of: SO_0000673
so part of: AWJ20_4718
location: 339974..341797
location: region:339974-341797:1
so has part: feature:339974-341797:1:exon

XP_018736249.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:339974-341797:1:exon

AWJ20_4719
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: YPK1
locus tag: AWJ20_4719
so part of: sequence
location: complement(<343594..>346173)
location: region:343594-346173:-1
so has part: feature:343594-346173:-1:exon
subclass of: SO_0000010

30036881
type: Gene
SIO_000068: ncbigene

position:343594:-1
position: 343594
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:346173:-1
position: 346173
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:343594-346173:-1:exon

AWJ20_4719
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: YPK1
locus tag: AWJ20_4719
product: serine/threonine protein kinase YPK1
transcript id: XM_018881808.1
SIO_010081: AWJ20_4719
subclass of: SO_0000673
so part of: AWJ20_4719
location: complement(join(<343594..345933,346144..>346173))
location: region:343594-346173:-1
so has part: feature:346144-346173:-1:exon
so has part: feature:343594-345933:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:346144-346173:-1:exon

position:346144:-1
position: 346144
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:343594-345933:-1:exon

position:345933:-1
position: 345933
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

AWJ20_4719
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: YPK1
locus tag: AWJ20_4719
inference: similar to AA sequence:KEGG_Orthology:K13303
codon start: 1
product: serine/threonine protein kinase YPK1
translation: MDQTSQESSFRSTTGSGAAPQPPEAAPEPKLTNPLELKETHLSAAFSPRSSASSSSTNGGADSSPNGKSGASSGASSTSDLAGSNNSNRTPVSFVSVTTGHHSPGRKIPNSSASSLETISGNNSSGAATSGSPSVVPALSSSVSSSVSLNANSTNSSSGQAANPAISSASSSSSAAAVASASAAAADAAIKEGDPATSTSTITPGLLSVSITKAVGLSLPPGNVWPNYILNATNSSIGAGSVSGSIAPGGTGSGIGGVGSLSNGNSISPRKQQLSSPSQLHQLQRDKQSPSNLGRRRPPPIYIVLEYDKTQVILDAMGGTVDGPIWDKVSNFDVSRIESLSIQVFAKIPVTVNTDGTSSVGAGGSVIVGGESPFTPPRQSLGDNGTAESTRGGNLNSEALRKKGYQEIFLGTCKIDANLSKTVICDGWLPLSSGTGKIQVRIEFKANKNNKHLTIEDFDLLKVVGKGSFGKVMQVRKIDTRRIYALKTIRKAHIISRSEVNHTLAERTVLAQIDNPFIVPLKFSFQSPEKLYLVLAFVNGGELFHHLQREGRFDLNRSRFYTAELLCALECLHEYNVIYRDLKPENILLDYTGHIALCDFGLCKLNMAGQEKTNTFCGTPEYLAPELLLGQGYTKVVDWWTLGVLFYEMLTGLPPFYDQDTNEMYRKILQDPLRFPDDMDREARSLLTGLLNRDPKKRLGVNGAAEIKAHPFFAQIDWKRLMNKKYAAPFKPSVESATDTSNFDQEFTSEVPTDSVVEKDFYLSESVQQQFGGWTYTNTDSKLASSGRW
SIO_010081: AWJ20_4719
subclass of: SO_0000673
so part of: AWJ20_4719
location: complement(join(343594..345933,346144..346173))
location: region:343594-346173:-1
so has part: feature:346144-346173:-1:exon
so has part: feature:343594-345933:-1:exon

XP_018736250.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:346144-346173:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:343594-345933:-1:exon

AWJ20_4720
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: HSL1
locus tag: AWJ20_4720
so part of: sequence
location: <352921..>356430
location: region:352921-356430:1
so has part: feature:352921-356430:1:exon
subclass of: SO_0000010

30036883
type: Gene
SIO_000068: ncbigene

position:352921:1
position: 352921
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:356430:1
position: 356430
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:352921-356430:1:exon

AWJ20_4720
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: HSL1
locus tag: AWJ20_4720
product: protein kinase HSL1
transcript id: XM_018881810.1
SIO_010081: AWJ20_4720
subclass of: SO_0000673
so part of: AWJ20_4720
location: <352921..>356430
location: region:352921-356430:1
so has part: feature:352921-356430:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:352921-356430:1:exon

AWJ20_4720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: HSL1
locus tag: AWJ20_4720
inference: similar to AA sequence:KEGG_Orthology:K02515
codon start: 1
product: protein kinase HSL1
translation: MTTVAVAAAQAATHTASSGPAAGSDEAVKANHRLSQTSNHSSASKRSKSHVGPWRLGRTLGRGSSGRVRLAKHSLTGQLAAVKIVPKEIVVGGGSAGNGAATSPSANGGAGPGATAVVDATQYGSDPKDQGGLPYGIEREVIIMKLIEHPNVMALYDVWENKGELYLVLEYVEGGELFDYLIKKGRLDEREAVNYFRQIIYGVDYCHKFNICHRDLKPENLLLDKNRNIKIADFGMAALETSDRMLETSCGSPHYASPEIVAGKNYHGAPSDIWSCGVILFALLTGHLPFDDDNIRKLLLKVQTGKFIMPSDISSEAQDLIWRMLRVDPIKRISMAEILRHPLLKKYPVRKNGHHNTRLHQPVDTIFANADRPVKTVSDIDPEILKNLQILWHGASKKAVIEKLLAPGPNSEKTFYCLLMKYRHDHRQDEEYSNNKNNSVSRDNESSSHHHASRHNHTHTHHQSHHRKRSSQVSITLKKTAVRNAAGAAGPHSRNHSRSNSVASVITASSSHRRNVAFVRKRASSSHMRHQSGNTTPQKTTPPSSIIARNATTTTTTSTANPTSAGATTTSTEIETATTAVTAKPQVESLPIPRTYINQTPTPHLTPEEDFNFISKRASVELASMCEQAFFSTDLPSRTSDRAVSDPLSSIKAPKMATTEKRVFSLGEHEVNSVEPGSRPYSAYSTVSEASTTSTATPYFLPMIFEEDRFADAIEEEVDLKIYKRPNRAHDKRDTITQDYDYDYDYFKQESVLAQPKKRELVPPSAHTAVTKESSRLQISGLVKTDSFKARSHTGFAAYRTPSAPVPKPNPVVTTEPVLLISPSPPPSPIEATNSITTATGKDSSDNTTKPSQSDRRPNTANNNTKSSAKSTNRPATTTKQAPVVSTSTITTTNASKPISNPYKNSQVSQVQRTKTDPLKNHDQQPVSKPVRKPLAVKSNNIMITSNDVTDMSDLKSKEAAATAKPNAATSLFRRLTLNPRRPPPPPPPATAVSTTQPQAVRPAPPPPPAPTVATRTSSGKSNEVKQNWFMKMLNPNPQYTTRPTPSTAKKSQYATKTLFSTSSVTTMRHIIVEVLEDWQKYGISQINEDSVSSTVTAVISSRNVLSMRSAKFRINVYPMQGGTRAVFTQEKGSNTTFLRFLGELERALGEMDVLSPPRTDARTAIGLR
SIO_010081: AWJ20_4720
subclass of: SO_0000673
so part of: AWJ20_4720
location: 352921..356430
location: region:352921-356430:1
so has part: feature:352921-356430:1:exon

XP_018736251.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:352921-356430:1:exon

AWJ20_4721
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: NAM9
locus tag: AWJ20_4721
so part of: sequence
location: <356877..>358460
location: region:356877-358460:1
so has part: feature:356877-358460:1:exon
subclass of: SO_0000010

30036884
type: Gene
SIO_000068: ncbigene

position:356877:1
position: 356877
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:358460:1
position: 358460
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:356877-358460:1:exon

AWJ20_4721
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: NAM9
locus tag: AWJ20_4721
product: mitochondrial 37S ribosomal protein NAM9
transcript id: XM_018881811.1
SIO_010081: AWJ20_4721
subclass of: SO_0000673
so part of: AWJ20_4721
location: <356877..>358460
location: region:356877-358460:1
so has part: feature:356877-358460:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:356877-358460:1:exon

AWJ20_4721
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: NAM9
locus tag: AWJ20_4721
note: Mitochondrial ribosomal component of the small subunit; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]
codon start: 1
product: mitochondrial 37S ribosomal protein NAM9
translation: MTRRNKVLFSLTRKRIRPSYNKYNVFNAMTWRKNIRRGTLYQQIFSAKQESRSYHGEHLTETQFRNIFKSELNSVNPLQSTKSAGSAESKSSQDEIPWALQTYVGLERRLDTAVFRAMFASSIRQSAQFIVRGNVKVNGIKIKQPGYILRPGDVFSVEPERVLEALGRQKPTIKQSVELVNKQIKKYNKYLDKCRAKPEVMWRIRQHNRKRNKAYYTKYLEKQTARNIAWNKQVREDMSKKIDEVTPVSVLEGILRNEAYFNKHGTLPQDGGKAILAKSLSIYGLVKGVNVNLKVDSAPAVKAAATETTTENTASETASETASETATETATESTTESSAAAAAETGEVASADVSKTVSKYYSKEESGESGPANKSDVKKLVQDVVKLRQEHIRQTYSSKIRDLKNSSEEYDPTWVDRLPEKLPIVRAKDAREDINSVLPIRLPYGHGKLYGLSKPEKGYFTPWTPRQFLTPFAVLPHHIEVSFLTCHAVYLRDPVARPGHSELVSPFPLDMHERAHMYYFARRRKNI
SIO_010081: AWJ20_4721
subclass of: SO_0000673
so part of: AWJ20_4721
location: 356877..358460
location: region:356877-358460:1
so has part: feature:356877-358460:1:exon

XP_018736252.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:356877-358460:1:exon

AWJ20_4722
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SRV2
locus tag: AWJ20_4722
so part of: sequence
location: complement(<358683..>360675)
location: region:358683-360675:-1
so has part: feature:358683-360675:-1:exon
subclass of: SO_0000010

30036885
type: Gene
SIO_000068: ncbigene

position:358683:-1
position: 358683
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:360675:-1
position: 360675
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:358683-360675:-1:exon

AWJ20_4722
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SRV2
locus tag: AWJ20_4722
product: Srv2p
transcript id: XM_018881812.1
SIO_010081: AWJ20_4722
subclass of: SO_0000673
so part of: AWJ20_4722
location: complement(join(<358683..360369,360614..>360675))
location: region:358683-360675:-1
so has part: feature:360614-360675:-1:exon
so has part: feature:358683-360369:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:360614-360675:-1:exon

position:360614:-1
position: 360614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:358683-360369:-1:exon

position:360369:-1
position: 360369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

AWJ20_4722
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SRV2
locus tag: AWJ20_4722
inference: similar to AA sequence:KEGG_Orthology:K17261
note: CAP (cyclase-associated protein); N-terminus binds adenylate cyclase and facilitates activation by RAS; N-terminus forms novel hexameric star-shaped shuriken structures that directly catalyze cofilin-mediated severing of actin filaments; C-terminus, in physically and genetically separate activity, binds and recycles cofilin bound, ADP-actin monomers, facilitating regulation of actin dynamics and cell morphogenesis; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 8552082]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_function: GO:0003779 - actin binding [Evidence IEA,IEA]; GO_function: GO:0003779 - actin binding [Evidence IDA] [PMID 19201756]; GO_function: GO:0008179 - adenylate cyclase binding [Evidence IDA] [PMID 2184942]; GO_process: GO:0007265 - Ras protein signal transduction [Evidence IMP] [PMID 9774417]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IEA]; GO_process: GO:0007015 - actin filament organization [Evidence IDA,IMP] [PMID 19201756]; GO_process: GO:0051014 - actin filament severing [Evidence IDA] [PMID 23135996]; GO_process: GO:0000902 - cell morphogenesis [Evidence IEA]; GO_process: GO:0007010 - cytoskeleton organization [Evidence IEA]
codon start: 1
product: Srv2p
translation: MSVNENTPSGPGYNIVTLMKRLEAATSRLEDLTVYHSEALSRSALGTAAGVTAEKRAEAAAGSDAGSAVGEKGVGSGADSIATSPTDTSGSGGVGSTPAAKSVDSPSSSPIIEEFETIIKTGLTQLLALSKSLDPLIEEQVIPLLRAFEAERDFLIVSLKASKPDVSSKTFSELFAPIQQHAETIINIRETNRGSKFINHLATVAEGIPALGWVTVDSPVDYISDFKDSAQFYSNRILKEYKDVEKKHVDWARTFSSVIVDLQSFVRKHYPKGLQWNENGKPLDVVIKEKNEEGASTSVIATPAVTPPDSTSGAAKTGGAPPPPPPPPASLFTDDAKSGPETDSSSSSGGGMNAVFAALNQGEGITSSLKKVDKSEMTHKNPALRAGANEASKVKKSPPPPKKPASLAAGAPSAASNVQSKKKPAHKELIDTKWIVEYFENEHKIVIEGEMNQGVFIDRCSNCTIQIKGKVSAITINECSKVGVLFENLVSGVDVIKSTGFGLQVTGSMPTLTIDQSHEGQIYLSEESLNVDIYTSQTSAINIEVPRNAEEGDYSETPLPEQVVHRIGPNGQLTSTVVAIDG
SIO_010081: AWJ20_4722
subclass of: SO_0000673
so part of: AWJ20_4722
location: complement(join(358683..360369,360614..360675))
location: region:358683-360675:-1
so has part: feature:360614-360675:-1:exon
so has part: feature:358683-360369:-1:exon

XP_018736253.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:360614-360675:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:358683-360369:-1:exon

AWJ20_4723
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ARP5
locus tag: AWJ20_4723
so part of: sequence
location: <361197..>363431
location: region:361197-363431:1
so has part: feature:361197-363431:1:exon
subclass of: SO_0000010

30036886
type: Gene
SIO_000068: ncbigene

position:361197:1
position: 361197
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:363431:1
position: 363431
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:361197-363431:1:exon

AWJ20_4723
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ARP5
locus tag: AWJ20_4723
product: Arp5p
transcript id: XM_018881813.1
SIO_010081: AWJ20_4723
subclass of: SO_0000673
so part of: AWJ20_4723
location: <361197..>363431
location: region:361197-363431:1
so has part: feature:361197-363431:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:361197-363431:1:exon

AWJ20_4723
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ARP5
locus tag: AWJ20_4723
inference: similar to AA sequence:KEGG_Orthology:K11672
note: Nuclear actin-related protein involved in chromatin remodeling; component of chromatin-remodeling enzyme complexes; promotes nucleosome shifts in the 3 prime direction; GO_component: GO:0031011 - Ino80 complex [Evidence IEA]; GO_component: GO:0031011 - Ino80 complex [Evidence IDA,IMP] [PMID 12887900]; GO_component: GO:0031011 - Ino80 complex [Evidence IDA] [PMID 15525518]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 24034245]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10923024]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11011149]; GO_function: GO:0043140 - ATP-dependent 3'-5' DNA helicase activity [Evidence IDA] [PMID 10952318]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IMP] [PMID 12887900]; GO_process: GO:0006338 - chromatin remodeling [Evidence IPI] [PMID 15525518]; GO_process: GO:0042766 - nucleosome mobilization [Evidence IDA] [PMID 12887900]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]
codon start: 1
product: Arp5p
translation: MPPSIDSVKVEEPVEEFAPVLYPLRDIEKPEAVEPITGGWKEGVPIAIDFGSYQTRIGYANEESPSHEFFSQVSKFRDRRANRSYTLVGNDIYLDATARQSIKSPFDGPLISNWDATETILDYSFAKLSVGSRNGVENPIVMTEILGAPEPQRKFMNELLFEGYNVPSLTYGIDSLFSFHYNQGVNVSDSSHTGIVVSCGHEATHIIPVIKGRGILSQAKRINWGGRQASSYLQALLALKYPYFPTKVTPSQATYMIHDHCYVSSDYPQELSNYLEYSTMSTRERIIQAPFTEVVVQEKSEEELARIAEQRKESGRRLQEQAAKKRLEKLVQQEQELEYYNELKNRIASAPNKKEVKRMLDGEGIKDEAALQKTISELEKTIRRGRKQDVGDDTEEQVAPSFPLVEIPDEDLDEEQIKEKRRQRLLKASYDARMRAKEEKLLEEQRLAEEARKDDEWREADLEGWIKEKRDKLDGLLANVREKERLREELSNRKSHASQMRMKSIAVLASDSRGGNKRRRAAGAGDDDPDDTFGANDDDWAVYRRIANASDSEEEEEEKNTIKALQEQLLQHDPTFSIEDTREAQLDWRKSTIHMFLRGPHEFDPESRAQSHQLNLNVERIRVPEVLFQPSIAGVDQAGIVEVCGDILLRNKTIPYANNLFLHGGQAHFPNFEDRLFNELRAILPVNTSLSVKRASNLSFDAWRGMAQWSLTDDFRSSVVTREDYLEMGSGYIKEHGFGNALVR
SIO_010081: AWJ20_4723
subclass of: SO_0000673
so part of: AWJ20_4723
location: 361197..363431
location: region:361197-363431:1
so has part: feature:361197-363431:1:exon

XP_018736254.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:361197-363431:1:exon

AWJ20_4724
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4724
so part of: sequence
location: <363829..>363940
location: region:363829-363940:1
so has part: feature:363829-363940:1:exon
subclass of: SO_0000663

30036887
type: Gene
SIO_000068: ncbigene

position:363829:1
position: 363829
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:363940:1
position: 363940
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:363829-363940:1:exon

AWJ20_4724
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_4724
product: tRNA-Leu
SIO_010081: AWJ20_4724
subclass of: SO_0000673
so part of: AWJ20_4724
location: <363829..>363940
location: region:363829-363940:1
so has part: feature:363829-363940:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:363829-363940:1:exon

AWJ20_4725
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: NCL1
locus tag: AWJ20_4725
so part of: sequence
location: complement(<364114..>365994)
location: region:364114-365994:-1
so has part: feature:364114-365994:-1:exon
subclass of: SO_0000010

30036888
type: Gene
SIO_000068: ncbigene

position:364114:-1
position: 364114
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:365994:-1
position: 365994
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:364114-365994:-1:exon

AWJ20_4725
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: NCL1
locus tag: AWJ20_4725
product: Ncl1p
transcript id: XM_018881814.1
SIO_010081: AWJ20_4725
subclass of: SO_0000673
so part of: AWJ20_4725
location: complement(<364114..>365994)
location: region:364114-365994:-1
so has part: feature:364114-365994:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:364114-365994:-1:exon

AWJ20_4725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: NCL1
locus tag: AWJ20_4725
inference: similar to AA sequence:KEGG_Orthology:K14835
note: S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase; methylates cytosine to m5C at several positions in tRNAs and intron-containing pre-tRNAs; increases proportion of tRNALeu(CAA) with m5C at wobble position in response to hydrogen peroxide, causing selective translation of mRNA from genes enriched in TTG codon; loss of NCL1 confers hypersensitivity to oxidative stress; similar to Nop2p and human proliferation associated nucleolar protein p120; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9767141]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016428 - tRNA (cytosine-5-)-methyltransferase activity [Evidence IEA]; GO_function: GO:0016428 - tRNA (cytosine-5-)-methyltransferase activity [Evidence IDA] [PMID 10445884]; GO_function: GO:0000049 - tRNA binding [Evidence IEA]; GO_function: GO:0000049 - tRNA binding [Evidence IDA] [PMID 17567576]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0070301 - cellular response to hydrogen peroxide [Evidence IMP] [PMID 22760636]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IDA] [PMID 10445884]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0002127 - wobble base cytosine methylation [Evidence IMP] [PMID 22760636]
codon start: 1
product: Ncl1p
translation: MGRKAKNKQPAPPSLDEFHEGKKRKGHKSAGSSSSSSKKHKPNGTNGTTEHKSKRSSKSKTSAPIDKEEIEKTKKSLFENSDEEEDDDVVGSELDDDEFYDSDEDRQAKPMFSDDDEDDEILEQMNKKAAATFGLEDSEDEEDDDEDEEENDEFDVDEEDEDDDEDDEDGEDDSGKYATEEAPKAHVLPSEQEKEIETQHPTDLHALRTRILEVVKVLEDFKTLAEEGRSRSEYTDQLLDDIAAYYGYSRYLAEKLFNLFSPAEAIEFFEANEVARPVTIRTNTLKTRRRDLAQALINRGVNLQPIGKWTKVGLQVFESQVPIGATPEYLAGHYILQAASSFLPVMALDPQENERVLDMASAPGGKTTFISAMMKNTGCVFANDSNKSRTKSLIANIHRLGCSNTIVCNYDAREFPKVIGGFDRVLLDAPCSGTGVIAKDPAVKTSRTEKDFIQLPHLQKQLLLSAIDSVDASSKTGGVIVYSTCSVMVEENEAVVDYVLRKRPNVKLVETHLEIGKEGFTNFRGKKFDPSVKLTRRYYPHTYNVDGFYVAKFQKTSGSFHDNSKAGAREKERAIREDEDAEPLIHGDFAEFNDPEDSALIEQTRRRSMKKKGLNPNAHKPKPAKN
SIO_010081: AWJ20_4725
subclass of: SO_0000673
so part of: AWJ20_4725
location: complement(364114..365994)
location: region:364114-365994:-1
so has part: feature:364114-365994:-1:exon

XP_018736255.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:364114-365994:-1:exon

AWJ20_4726
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: GCD10
locus tag: AWJ20_4726
so part of: sequence
location: <366366..>367721
location: region:366366-367721:1
so has part: feature:366366-367721:1:exon
subclass of: SO_0000010

30036889
type: Gene
SIO_000068: ncbigene

position:366366:1
position: 366366
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:367721:1
position: 367721
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:366366-367721:1:exon

AWJ20_4726
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: GCD10
locus tag: AWJ20_4726
product: Gcd10p
transcript id: XM_018881815.1
SIO_010081: AWJ20_4726
subclass of: SO_0000673
so part of: AWJ20_4726
location: <366366..>367721
location: region:366366-367721:1
so has part: feature:366366-367721:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:366366-367721:1:exon

AWJ20_4726
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: GCD10
locus tag: AWJ20_4726
inference: similar to AA sequence:KEGG_Orthology:K03256
note: Subunit of tRNA (1-methyladenosine) methyltransferase with Gcd14p; required for the modification of the adenine at position 58 in tRNAs, especially tRNAi-Met; first identified as a negative regulator of GCN4 expression; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9851972]; GO_component: GO:0031515 - tRNA (m1A) methyltransferase complex [Evidence IDA,IPI] [PMID 10779558]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0016429 - tRNA (adenine-N1-)-methyltransferase activity [Evidence IDA] [PMID 10779558]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IDA] [PMID 10779558]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA]
codon start: 1
product: Gcd10p
translation: MTSTRQQKQLQSLQQQDPESIDYSHEFDQTHIKPGQYVMIRLPSENFRVLQLHPGQTVNLGKFGSFKVDDILNHPYGYTYEIGADNKLSIVNHNYELDNQDEPVSELAPHENNRELVDDSSVQGLSMAEIEELKKGGLSGKQIIEKVKTSHSSFDKKTAFSKEKYLKRKQQKFLNQFTPEPIGSAELIDIYLDKDASRIQNMSEESLALMLSLANVRPGGTYLVVDDISGLLVGAMMERMGGEGLIVVAHDNEHPNLDGLRYMNYSQGLIAKMIKTVNWLEFFEPSEIEPFEEKTTEELQQLKSNQRGQYYRRRTRYNDSVTVQNLISNSGFDGLLVATGLHLASLIPRIIPAVGGSRPIVMFSETKELLTETTLVLHKDFRVISPTILETRLRKYQTLPGRMHPHMTSRGGGGYVLWGIRVFPDENANAVGKVHRKRKATDSGTSTPAEE
SIO_010081: AWJ20_4726
subclass of: SO_0000673
so part of: AWJ20_4726
location: 366366..367721
location: region:366366-367721:1
so has part: feature:366366-367721:1:exon

XP_018736256.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:366366-367721:1:exon

AWJ20_4727
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MTQ1
locus tag: AWJ20_4727
so part of: sequence
location: complement(<367873..>368628)
location: region:367873-368628:-1
so has part: feature:367873-368628:-1:exon
subclass of: SO_0000010

30036890
type: Gene
SIO_000068: ncbigene

position:367873:-1
position: 367873
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:368628:-1
position: 368628
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:367873-368628:-1:exon

AWJ20_4727
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MTQ1
locus tag: AWJ20_4727
product: Mtq1p
transcript id: XM_018881816.1
SIO_010081: AWJ20_4727
subclass of: SO_0000673
so part of: AWJ20_4727
location: complement(<367873..>368628)
location: region:367873-368628:-1
so has part: feature:367873-368628:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:367873-368628:-1:exon

AWJ20_4727
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MTQ1
locus tag: AWJ20_4727
note: S-adenosylmethionine-dependent methyltransferase; methylates translational release factor Mrf1p; similar to E.coli PrmC; is not an essential gene; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IDA,IMP] [PMID 16321977]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0008276 - protein methyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0006479 - protein methylation [Evidence IEA]; GO_process: GO:0006451 - translational readthrough [Evidence IGI] [PMID 16321977]
codon start: 1
product: Mtq1p
translation: MRGRGVPLQYIIGSQPFGDLDIKCARGVLIPRWETEEWTLKLAQLLQYQQLIEQDQNSSRPHSQMTVVDLCTGTGCIPLSLASKLRNTVAYGVDISQKAVKLFKSNIKSVNRSRRLDKRNSKVIPAQGDISIDPYVFCEKTGITDADIVTANPPYIGRREFFSQTERSVRLYEPHQALLGGLEFYRWIYDLSVHLQAKGLVCEVGNAGQIDFMRSLGAKNGWSSSEFHDLNGHPRAVVMWKDPSWSFLEAL
SIO_010081: AWJ20_4727
subclass of: SO_0000673
so part of: AWJ20_4727
location: complement(367873..368628)
location: region:367873-368628:-1
so has part: feature:367873-368628:-1:exon

XP_018736257.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:367873-368628:-1:exon

AWJ20_4728
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4728
so part of: sequence
location: <369392..>370609
location: region:369392-370609:1
so has part: feature:369392-370609:1:exon
subclass of: SO_0000010

30036891
type: Gene
SIO_000068: ncbigene

position:369392:1
position: 369392
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:370609:1
position: 370609
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:369392-370609:1:exon

AWJ20_4728
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4728
product: putative cysteine synthase
transcript id: XM_018881817.1
SIO_010081: AWJ20_4728
subclass of: SO_0000673
so part of: AWJ20_4728
location: <369392..>370609
location: region:369392-370609:1
so has part: feature:369392-370609:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:369392-370609:1:exon

AWJ20_4728
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4728
inference: similar to AA sequence:KEGG_Orthology:K01738
note: Putative cysteine synthase; localized to the mitochondrial outer membrane; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004124 - cysteine synthase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0019344 - cysteine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006535 - cysteine biosynthetic process from serine [Evidence IEA]
codon start: 1
product: putative cysteine synthase
translation: MTHYSRSEDIVLTIYIRDPDRTMLAKRLVLSSGLLGKGSVSLAARGYATIGTAADGGPFVPPFIPLVSESGFPGAVGNTPLVRLNKLSDETGTNIYGKAEFMNPGGSVKDRAALFIIQDAEKKGLIKPGGTIVEGTAGNTGIGLAHMCRARGYKCVIYMPNTQSQGKIDHLRRLGAEVYPVPAVAFDNPDNYNHQAKRHADRLDNAVWTNQFDNVANRQAHIETTGPEIWAQTNGKLDAFTCATGTGGSLAGTTRYLKEISNGRVKAFLADPPGSVLHSYISSGGKLIERSGSSITEGIGQGRVTDNLKPDIELMDGSLTISDEKTINMVYRLLDEEGLYLGASSCLNVVAAYEVAQKLGPGSTVVTLLCDSADRYADRLFSRKWLQSKNLDVLPEHLQKYIVLE
SIO_010081: AWJ20_4728
subclass of: SO_0000673
so part of: AWJ20_4728
location: 369392..370609
location: region:369392-370609:1
so has part: feature:369392-370609:1:exon

XP_018736258.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:369392-370609:1:exon

AWJ20_4729
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PPH21
locus tag: AWJ20_4729
so part of: sequence
location: complement(<370763..>371788)
location: region:370763-371788:-1
so has part: feature:370763-371788:-1:exon
subclass of: SO_0000010

30036892
type: Gene
SIO_000068: ncbigene

position:370763:-1
position: 370763
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:371788:-1
position: 371788
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:370763-371788:-1:exon

AWJ20_4729
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PPH21
locus tag: AWJ20_4729
product: phosphoprotein phosphatase 2A catalytic subunit PPH21
transcript id: XM_018881818.1
SIO_010081: AWJ20_4729
subclass of: SO_0000673
so part of: AWJ20_4729
location: complement(<370763..>371788)
location: region:370763-371788:-1
so has part: feature:370763-371788:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:370763-371788:-1:exon

AWJ20_4729
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PPH21
locus tag: AWJ20_4729
inference: similar to AA sequence:KEGG_Orthology:K04382
note: Catalytic subunit of protein phosphatase 2A (PP2A); functionally redundant with Pph22p; methylated at C terminus; forms alternate complexes with several regulatory subunits; involved in signal transduction and regulation of mitosis; forms nuclear foci upon DNA replication stress; PPH21 has a paralog, PPH22, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0000159 - protein phosphatase type 2A complex [Evidence IDA] [PMID 17550305]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IMP] [PMID 2176150]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IGI] [PMID 12518319]; GO_process: GO:0007015 - actin filament organization [Evidence TAS] [PMID 9001215]; GO_process: GO:0007117 - budding cell bud growth [Evidence TAS] [PMID 9001215]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence IPI] [PMID 9001215]; GO_process: GO:0006470 - protein dephosphorylation [Evidence TAS] [PMID 9001215]; GO_process: GO:0006417 - regulation of translation [Evidence IPI] [PMID 10329624]
codon start: 1
product: phosphoprotein phosphatase 2A catalytic subunit PPH21
translation: MEVDQEDPLSQVKHPASTSRSGDGIPEIKPAENLHSIGIGILETWIERLLKCEILSESQVMRLCDTAREILVNESNVQPVSSPVTICGDIHGQFHDLLELFRIGGPCPDTNYLFMGDYVDRGYFSVETISLLLAYKVRYPHRITILRGNHESRQITQVYGFYDECLRKYGNTKVWTAFTDLFDYLPLTALVENRIFCLHGGLSPSIETLDQIVQLDRFQEAPHEGPVCDLLWSDPDERSAWGVSPRGAGFTFGFDISSQFNHANSLSLIARAHQLIMEGYQFTHEERVVTIFSAPNYCYRCGNQAAIMEVDENMNTTFLQFDPSPRSGQSNFSRRTPDYFL
SIO_010081: AWJ20_4729
subclass of: SO_0000673
so part of: AWJ20_4729
location: complement(370763..371788)
location: region:370763-371788:-1
so has part: feature:370763-371788:-1:exon

XP_018736259.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:370763-371788:-1:exon

AWJ20_4730
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TAF12
locus tag: AWJ20_4730
so part of: sequence
location: <374864..>376864
location: region:374864-376864:1
so has part: feature:374864-376864:1:exon
subclass of: SO_0000010

30036894
type: Gene
SIO_000068: ncbigene

position:374864:1
position: 374864
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:376864:1
position: 376864
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:374864-376864:1:exon

AWJ20_4730
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TAF12
locus tag: AWJ20_4730
product: Taf12p
transcript id: XM_018881820.1
SIO_010081: AWJ20_4730
subclass of: SO_0000673
so part of: AWJ20_4730
location: <374864..>376864
location: region:374864-376864:1
so has part: feature:374864-376864:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:374864-376864:1:exon

AWJ20_4730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TAF12
locus tag: AWJ20_4730
inference: similar to AA sequence:KEGG_Orthology:K03126
note: Subunit (61/68 kDa) of TFIID and SAGA complexes; involved in RNA polymerase II transcription initiation and in chromatin modification, similar to histone H2A; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9674426]; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IDA] [PMID 12446794]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IEA]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IDA,IPI] [PMID 12501245]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC]; GO_function: GO:0017025 - TBP-class protein binding [Evidence IDA] [PMID 10751405]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 10817999]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 12600943]; GO_function: GO:0032947 - protein complex scaffold [Evidence IMP] [PMID 9674426]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_process: GO:0006352 - DNA-templated transcription, initiation [Evidence IEA]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 12600943]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 12840001]; GO_process: GO:0016568 - chromatin modification [Evidence IDA,IMP] [PMID 9674426]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 9674426]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 10751405]; GO…
codon start: 1
product: Taf12p
translation: MNNGNNRAGASGGGGMPNIPNQSPANQAQAVRERLVNLQPQQLNALIQQYQQAMQGVIQAGPQSQEGQEHFLRAQRIKQVLQQYQGQMQAQAQQRGQRPPVANQAQTAAHAQAQAMNARAQQQAMNAAAANGAIPQNQQAMAQLQQQQLLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQAAVAAAAAANPNANHARLASQQQQQQQQQQQQQQQQQQQQQQQQQRQRQFQSMTPQQQFAYRTSQLEQFRNTQRTLQEQLDRLERALREQPNLDEEMKAKIRQQEQSLRDRKDSYKSLELQVMQQIRVAAGQQQLQQQQQQQQQQQQQQNPGAQAQVQAQQSQAQTPAAQAQFQQQQQQQAAAAAVRQSPALQNQLPQGSPIGVPISSPMNAASTPIQRPGSVASNSSAGRPISPAVGAGAGGPGTPGAPGTPSVNMARMANGLAPSTRVAMQLSANNIPGGTPPTGPSARPNPPNHLAASQAMSSPTRASVPSLPIPQNLTVKQPVPVTMKPGRPSLSGGNAIPAAALTTPALTKPPQFEVTGDRVLSKRKLSELVSSVVGDDKEAMIDGDVEELLLDLADEFVTSVTSFACRLAKHRKSDTLEVKDLQLHLERNWNIRIPGYSADEIRSVRKIAPTQSYIQKIAGVNMSRSVGGKGI
SIO_010081: AWJ20_4730
subclass of: SO_0000673
so part of: AWJ20_4730
location: 374864..376864
location: region:374864-376864:1
so has part: feature:374864-376864:1:exon

XP_018736260.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:374864-376864:1:exon

AWJ20_4731
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4731
so part of: sequence
location: complement(<377202..>377861)
location: region:377202-377861:-1
so has part: feature:377202-377861:-1:exon
subclass of: SO_0000010

30036895
type: Gene
SIO_000068: ncbigene

position:377202:-1
position: 377202
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:377861:-1
position: 377861
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:377202-377861:-1:exon

AWJ20_4731
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4731
product: hypothetical protein
transcript id: XM_018881821.1
SIO_010081: AWJ20_4731
subclass of: SO_0000673
so part of: AWJ20_4731
location: complement(<377202..>377861)
location: region:377202-377861:-1
so has part: feature:377202-377861:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:377202-377861:-1:exon

AWJ20_4731
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4731
codon start: 1
product: hypothetical protein
translation: MDLRTFKEASVRGGRASFDWENVKNDKYKTNYLGHSLMAPHQGRGGSKDPIWYSKEKDGGGGGGEQKNEGEQSELEMMKDMERKALAELLGYDPADMEKLEKKKDDRSNCEGSSHRSQRSHHHRSSDRDSSRERHRNHHSHRRRDRSNDRDSNKSTRSHEPRDRHRSRSRSRSRSRTREPSHRESRPRSRDSRKRHSHRHRDRSRERNRDQRDRSRDRR
SIO_010081: AWJ20_4731
subclass of: SO_0000673
so part of: AWJ20_4731
location: complement(377202..377861)
location: region:377202-377861:-1
so has part: feature:377202-377861:-1:exon

XP_018736261.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:377202-377861:-1:exon

AWJ20_4732
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SNF7
locus tag: AWJ20_4732
so part of: sequence
location: <379854..>380492
location: region:379854-380492:1
so has part: feature:379854-380492:1:exon
subclass of: SO_0000010

30036896
type: Gene
SIO_000068: ncbigene

position:379854:1
position: 379854
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:380492:1
position: 380492
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:379854-380492:1:exon

AWJ20_4732
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SNF7
locus tag: AWJ20_4732
product: ESCRT-III subunit protein SNF7
transcript id: XM_018881822.1
SIO_010081: AWJ20_4732
subclass of: SO_0000673
so part of: AWJ20_4732
location: <379854..>380492
location: region:379854-380492:1
so has part: feature:379854-380492:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:379854-380492:1:exon

AWJ20_4732
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SNF7
locus tag: AWJ20_4732
inference: similar to AA sequence:KEGG_Orthology:K12194
note: One of four subunits of the ESCRT-III complex; involved in the sorting of transmembrane proteins into the multivesicular body (MVB) pathway; recruited from the cytoplasm to endosomal membranes; ESCRT-III stands for endosomal sorting complex required for transport III; GO_component: GO:0000815 - ESCRT III complex [Evidence IDA] [PMID 12194857]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9606181]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 15086794]; GO_process: GO:0071454 - cellular response to anoxia [Evidence IMP] [PMID 20402793]; GO_process: GO:0070676 - intralumenal vesicle formation [Evidence IMP] [PMID 19234443]; GO_process: GO:0045324 - late endosome to vacuole transport [Evidence IMP] [PMID 9606181]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IC] [PMID 15086794]
codon start: 1
product: ESCRT-III subunit protein SNF7
translation: MWGYLFGSGAKKDQAKNSIISLREQIDTLSKREKHFQKQIEELEATARKNVTTNKAAARTALKRKKEREADLDKTQAQIDSLQQQLHAIENAKLNYETMKIMSQGAQAMKHIHGNMNIDKVDATMDDIRDQVALGEEISDAISRPLGQEVDEDDLNEELEALEQEALDAKMVNAGKAPVHNLPTQQLHEPEPAVEEDDEEEELRKLQAEMAL
SIO_010081: AWJ20_4732
subclass of: SO_0000673
so part of: AWJ20_4732
location: 379854..380492
location: region:379854-380492:1
so has part: feature:379854-380492:1:exon

XP_018736262.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:379854-380492:1:exon

AWJ20_4733
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SED5
locus tag: AWJ20_4733
so part of: sequence
location: complement(<380498..>382045)
location: region:380498-382045:-1
so has part: feature:380498-382045:-1:exon
subclass of: SO_0000010

30036897
type: Gene
SIO_000068: ncbigene

position:380498:-1
position: 380498
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:382045:-1
position: 382045
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:380498-382045:-1:exon

AWJ20_4733
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SED5
locus tag: AWJ20_4733
product: Sed5p
transcript id: XM_018881823.1
SIO_010081: AWJ20_4733
subclass of: SO_0000673
so part of: AWJ20_4733
location: complement(<380498..>382045)
location: region:380498-382045:-1
so has part: feature:380498-382045:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:380498-382045:-1:exon

AWJ20_4733
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SED5
locus tag: AWJ20_4733
inference: similar to AA sequence:KEGG_Orthology:K08490
note: cis-Golgi t-SNARE syntaxin; required for vesicular transport between the ER and the Golgi complex; binds at least 9 SNARE proteins; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0031201 - SNARE complex [Evidence IDA] [PMID 11001058]; GO_component: GO:0031201 - SNARE complex [Evidence IDA] [PMID 11959998]; GO_component: GO:0005801 - cis-Golgi network [Evidence IDA] [PMID 9725919]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 1400588]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0005484 - SNAP receptor activity [Evidence IEA]; GO_function: GO:0005484 - SNAP receptor activity [Evidence IDA] [PMID 11001058]; GO_function: GO:0005484 - SNAP receptor activity [Evidence IDA] [PMID 11959998]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 9545229]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IMP] [PMID 7596416]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006906 - vesicle fusion [Evidence IDA] [PMID 11001046]; GO_process: GO:0048280 - vesicle fusion with Golgi apparatus [Evidence IMP] [PMID 9545229]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]
codon start: 1
product: Sed5p
translation: MASAVLLPSVQDRTQEFRACVTSIAKINGTVVGRPGSSSSGQTGSYGGSGIINGPESAFGGPGASSGSGTGLENKSPKSQFALRASGIAQEISETTAMLQRLALLAKRKTLFDDRPVEIGELSFVIKQKLSKINDSIASLQAFVKTQGGGKAASAWGTNKSETQLNEHSRNVVVLLQGKLTDVTTGFTEVLETRTKNTQATRSRTEQFISSASSSVRDHTSSESPLYAAAANRRGNSSPAGSAATGGAGGDESYGENPYGRPLSSSTAQSLLPDHDKPGSGQDDFLVLPQQEQTMALLEEQQDSYLSQRSSAVEAIESTIQELGGIFSQLATMVAEQRETVQRIDANTEDIALNVSGAQRELLKYYSRISSNRWLMVKMFGIIIVSYTGATASGGWGSAPDPVAPLAALESARLLTAVTSSSSSSGSSSRRLPHSLTNSIPLTLVGPLVPPAAGAPPQTLVAPASQEFVPGPSTQRLERSERSNQGLGRSPSRRRQSVRQNYFMYSYIECSGPGG
SIO_010081: AWJ20_4733
subclass of: SO_0000673
so part of: AWJ20_4733
location: complement(380498..382045)
location: region:380498-382045:-1
so has part: feature:380498-382045:-1:exon

XP_018736263.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:380498-382045:-1:exon

AWJ20_4734
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4734
so part of: sequence
location: <383190..>384938
location: region:383190-384938:1
so has part: feature:383190-384938:1:exon
subclass of: SO_0000010

30036898
type: Gene
SIO_000068: ncbigene

position:383190:1
position: 383190
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:384938:1
position: 384938
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:383190-384938:1:exon

AWJ20_4734
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4734
product: hypothetical protein
transcript id: XM_018881824.1
SIO_010081: AWJ20_4734
subclass of: SO_0000673
so part of: AWJ20_4734
location: <383190..>384938
location: region:383190-384938:1
so has part: feature:383190-384938:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:383190-384938:1:exon

AWJ20_4734
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4734
codon start: 1
product: hypothetical protein
translation: MSQQISQSVPFRYINAIILTPIRSIVNNLNPALQRLACYGLTVYIGLYYWAPELLESVVRSTVASDLFIRILLPLGLFAAEITCPTTAGVKSLRGGVGDNPGAYSGVASGAVSSGGAGDAGGAEHDDESKSSLNSAIYREYSANDNDFTGKKDENKKGHNDEDSVHAASSVVASRGINEGKESATSVGSIDYSGRNNQTSSSWVGKTIPEVDEEESFNINERDISERDIAEMSVNTSTSGFDVPGLPNPPAASGTTSAVSEPAKDKSPDADVPSDASPAGTVGAAAAAQSNDSVHSSNTTPESQTLPVEQSISLSSSQATKFSPSSDCPNSKDQKTTDDPTSRHHPLPSLISTSLISDDTKPQSPTQPPPSPPKFIFGNNPGDFTRTNVTEDDLSIMNNLSEGIEKSIESLYKVITPVDANHNDFTVQDYNFSQTWKIGAPKKLIWRDVKFKEYSPKVLKRIRQLNHIDDLAYSSSFEHILLTKTPAGYTYYSRDKQYIIKPFTNDEFRTLRASLPLYYQHLLAHPDSSAPRYCGLYKMGNTNFVASTNTRTSPPPASTLAQDARLPPVIWAHQGLQNQAEY
SIO_010081: AWJ20_4734
subclass of: SO_0000673
so part of: AWJ20_4734
location: 383190..384938
location: region:383190-384938:1
so has part: feature:383190-384938:1:exon

XP_018736264.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:383190-384938:1:exon

AWJ20_4735
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4735
so part of: sequence
location: <386967..>387689
location: region:386967-387689:1
so has part: feature:386967-387689:1:exon
subclass of: SO_0000010

30036899
type: Gene
SIO_000068: ncbigene

position:386967:1
position: 386967
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:387689:1
position: 387689
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:386967-387689:1:exon

AWJ20_4735
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4735
product: hypothetical protein
transcript id: XM_018881825.1
SIO_010081: AWJ20_4735
subclass of: SO_0000673
so part of: AWJ20_4735
location: <386967..>387689
location: region:386967-387689:1
so has part: feature:386967-387689:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:386967-387689:1:exon

AWJ20_4735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4735
codon start: 1
product: hypothetical protein
translation: MPPAAGAPPQTLVAPASQEIFRVGTVSQRLERSERSNPGLGRSPSRRRQTPVPGESPLTRVTVNRTRAILGEIAGDGSFEAHAKGVSWPEFVDLVVELLDANVSGLYDRPEKSYIDPLTGQESSESEMTDQVKSLLRTEFAAGPPFTVQRLAELLGSPLDFYPAPFVYKYLTALKRVLSVASLSTDYPAVDLQAEIAQSKTDTSSANYGEPGVVMTEIPWVLDTGLPENTPTAAPADDPF
SIO_010081: AWJ20_4735
subclass of: SO_0000673
so part of: AWJ20_4735
location: 386967..387689
location: region:386967-387689:1
so has part: feature:386967-387689:1:exon

XP_018736265.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:386967-387689:1:exon

AWJ20_4736
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RSM24
locus tag: AWJ20_4736
so part of: sequence
location: complement(<387936..>388418)
location: region:387936-388418:-1
so has part: feature:387936-388418:-1:exon
subclass of: SO_0000010

30036900
type: Gene
SIO_000068: ncbigene

position:387936:-1
position: 387936
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:388418:-1
position: 388418
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:387936-388418:-1:exon

AWJ20_4736
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RSM24
locus tag: AWJ20_4736
product: mitochondrial 37S ribosomal protein RSM24
transcript id: XM_018881826.1
SIO_010081: AWJ20_4736
subclass of: SO_0000673
so part of: AWJ20_4736
location: complement(<387936..>388418)
location: region:387936-388418:-1
so has part: feature:387936-388418:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:387936-388418:-1:exon

AWJ20_4736
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RSM24
locus tag: AWJ20_4736
inference: similar to AA sequence:KEGG_Orthology:K17413
note: Mitochondrial ribosomal protein of the small subunit; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]
codon start: 1
product: mitochondrial 37S ribosomal protein RSM24
translation: MKLTRVELASPYRPPSDESVLTFKYNTFLGEDHPAGKKVTVQFSPSELGLTAAQKHKLCLLAGARYNSDTDVVTISSSKFPQQAQNKRFLGDILKSLLEAARDESDTFADVPLETRHMVAKRRRNKPVRPRVEFPEAWNRPQDAPKPKDDIVSVIHRLPL
SIO_010081: AWJ20_4736
subclass of: SO_0000673
so part of: AWJ20_4736
location: complement(387936..388418)
location: region:387936-388418:-1
so has part: feature:387936-388418:-1:exon

XP_018736266.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:387936-388418:-1:exon

AWJ20_4737
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RSM7
locus tag: AWJ20_4737
so part of: sequence
location: <389936..>390820
location: region:389936-390820:1
so has part: feature:389936-390820:1:exon
subclass of: SO_0000010

30036901
type: Gene
SIO_000068: ncbigene

position:389936:1
position: 389936
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:390820:1
position: 390820
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:389936-390820:1:exon

AWJ20_4737
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RSM7
locus tag: AWJ20_4737
product: mitochondrial 37S ribosomal protein RSM7
transcript id: XM_018881827.1
SIO_010081: AWJ20_4737
subclass of: SO_0000673
so part of: AWJ20_4737
location: <389936..>390820
location: region:389936-390820:1
so has part: feature:389936-390820:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:389936-390820:1:exon

AWJ20_4737
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RSM7
locus tag: AWJ20_4737
inference: similar to AA sequence:KEGG_Orthology:K02992
note: Mitochondrial ribosomal protein of the small subunit; has similarity to E. coli S7 ribosomal protein; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]; GO_process: GO:0006412 - translation [Evidence IEA]
codon start: 1
product: mitochondrial 37S ribosomal protein RSM7
translation: MSWVAKSSSVLAKSFGQRLFQSGSPSLLALRYNSTAASPKPSSASTTPSTASNQPSTAKYLVSLTEKELGEEGITRESADKEAQQWIDALNEVRNEFYAEGGFSPNKTFAPPGSTDFQFFRDVPRETPRSFELTAEQMEQYERIKEKAIPVRNDPTIEYLTKLIMRHGLKARAQKYMSQALYLVHLRTRQDPVALLKDTLEKMAPLVKLKRYTDGGARAEMIPVPLSERHRLRQSWLWLLESSRKRPSKDFSVRLSEEILSAIQGKSPGFEKRTQQHKLAIVNRSYVSLMTRKR
SIO_010081: AWJ20_4737
subclass of: SO_0000673
so part of: AWJ20_4737
location: 389936..390820
location: region:389936-390820:1
so has part: feature:389936-390820:1:exon

XP_018736267.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:389936-390820:1:exon

AWJ20_4738
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: HMO1
locus tag: AWJ20_4738
so part of: sequence
location: <393587..>394708
location: region:393587-394708:1
so has part: feature:393587-394708:1:exon
subclass of: SO_0000010

30036902
type: Gene
SIO_000068: ncbigene

position:393587:1
position: 393587
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:394708:1
position: 394708
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:393587-394708:1:exon

AWJ20_4738
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: HMO1
locus tag: AWJ20_4738
product: Hmo1p
transcript id: XM_018881828.1
SIO_010081: AWJ20_4738
subclass of: SO_0000673
so part of: AWJ20_4738
location: join(<393587..393694,393767..>394708)
location: region:393587-394708:1
so has part: feature:393587-393694:1:exon
so has part: feature:393767-394708:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:393587-393694:1:exon

position:393694:1
position: 393694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:393767-394708:1:exon

position:393767:1
position: 393767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

AWJ20_4738
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: HMO1
locus tag: AWJ20_4738
note: Chromatin associated high mobility group (HMG) family member; involved in genome maintenance; rDNA-binding component of the Pol I transcription system; associates with a 5'-3' DNA helicase and Fpr1p, a prolyl isomerase; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8969238]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 16612005]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 17646381]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12374750]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 22553361]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0008301 - DNA binding, bending [Evidence IDA] [PMID 15507436]; GO_function: GO:0008301 - DNA binding, bending [Evidence IDA] [PMID 16533046]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 15507436]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 16533046]; GO_function: GO:0000400 - four-way junction DNA binding [Evidence IDA] [PMID 15507436]; GO_function: GO:0000400 - four-way junction DNA binding [Evidence IDA] [PMID 16533046]; GO_process: GO:0060962 - regulation of ribosomal protein gene transcription from RNA polymerase II promoter [Evidence IMP] [PMID 17875934]; GO_process: GO:0060962 - regulation of ribosomal protein gene transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 18187511]; GO_process: GO:0034401 - regulation of transcription by chromatin organization [Evidence IDA] [PMID 18451108]; GO_process: GO:0006356 - regulation of transcription from RNA polymerase I promoter [Evidence IGI] [PMID 12374750]; GO_process: GO:0006356 - regulation of transc…
codon start: 1
product: Hmo1p
translation: MSVSDPLIQCYRWIARPFAEILNRILAISCEAGATRLISALFTLSKAAQEASGATIDFYNQLSGTSSGFPSSLSDLSSILASSATDLSLAHTDADFTAATAGLDVGSGSVVDPTGLSTPANDADEDAEGGKKKKAKRQRAPVDPNAPKKPVTAFFLYVAANRKHVQADLQAAKPEGEIVGNHELTAELGVRWHALSEAERASWKNQYKELMDIYNVEKQAYDSKKALTGDVNGVNGIGNLVVPGKATPVKKQANPVKKQRKDGLPGPNVVPGPGIPLGNELPGSLVHPQHHQVQHQVQHPGQHPGQHPGPLHTPGQLQSPLSGDKAKRDKKKEKKRRKPELPTDAPPTI
SIO_010081: AWJ20_4738
subclass of: SO_0000673
so part of: AWJ20_4738
location: join(393587..393694,393767..394708)
location: region:393587-394708:1
so has part: feature:393587-393694:1:exon
so has part: feature:393767-394708:1:exon

XP_018736268.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:393587-393694:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:393767-394708:1:exon

AWJ20_4739
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ARE2
locus tag: AWJ20_4739
so part of: sequence
location: <400511..>402397
location: region:400511-402397:1
so has part: feature:400511-402397:1:exon
subclass of: SO_0000010

30036903
type: Gene
SIO_000068: ncbigene

position:400511:1
position: 400511
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:402397:1
position: 402397
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:400511-402397:1:exon

AWJ20_4739
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ARE2
locus tag: AWJ20_4739
product: Are2p
transcript id: XM_018881829.1
SIO_010081: AWJ20_4739
subclass of: SO_0000673
so part of: AWJ20_4739
location: <400511..>402397
location: region:400511-402397:1
so has part: feature:400511-402397:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:400511-402397:1:exon

AWJ20_4739
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ARE2
locus tag: AWJ20_4739
inference: similar to AA sequence:KEGG_Orthology:K11155
note: Acyl-CoA:sterol acyltransferase; endoplasmic reticulum enzyme that contributes the major sterol esterification activity in the presence of oxygen; ARE2 has a paralog, ARE1, that arose from the whole genome duplication; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 10672016]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0008374 - O-acyltransferase activity [Evidence IEA]; GO_function: GO:0034736 - cholesterol O-acyltransferase activity [Evidence IEA]; GO_function: GO:0034737 - ergosterol O-acyltransferase activity [Evidence IGI,IMP] [PMID 10672016]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0008204 - ergosterol metabolic process [Evidence IGI,IMP] [PMID 10672016]
codon start: 1
product: Are2p
translation: MEQGSTSTMSSLVYLPRQKPFHRKLTPTTSPLAMSPNLHGISTGTSYGKQLGGKLADKDKLSSSHYNSNPNSSPNSNSNSYSYTDSEVLSPAQIHSQTQTQILEPPRFHTHSPHSRAHTHASGLSHKSNTGLTRKKSNSSTSGYLPHYKPIHTKSSASILSLSKHSPTSSYTGFRHLAMIVLTLGNLRLMIHDYQTYGFIMTLYRLGISQSDLNVAGLLLLSTPIHLFIALLIELGASKTVSNANHTTSEADNAHQVDSTSGITTGSRLGSKENSSVDVPTSTTKNSKASSNPTEPNKPHKKYLWKLFAALHTINATLVLIISSYTVYTSIWHPLIGTVIECHSIILCLKVSSYALTNRDLRDAYLEDAPVPELYGPSKYPHNLTIGNLVYFWWAPTLVYQPEYPRAPKVRYGFLVNRVLEMVGTIVLIWFLSGQYAVPILESSLVHFQNADLGQICETIMRLSTVSIVVWLLGFFFIFQSYLNFLAELLRFGDRDFYQDWWNAGSVGTYWRLWNKPVSNYFRRHFYAPLLKRGWTPMSSSLVVFFISAVLHELVVGIPTRNVIGVAFVCMMLQVPLIMVTAPLEKMRGPATTVGNCIFWLSFFLGQPVAVLMYYFAWNVKNGTHIKI
SIO_010081: AWJ20_4739
subclass of: SO_0000673
so part of: AWJ20_4739
location: 400511..402397
location: region:400511-402397:1
so has part: feature:400511-402397:1:exon

XP_018736269.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:400511-402397:1:exon

AWJ20_4740
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4740
so part of: sequence
location: complement(<403065..>404108)
location: region:403065-404108:-1
so has part: feature:403065-404108:-1:exon
subclass of: SO_0000010

30036905
type: Gene
SIO_000068: ncbigene

position:403065:-1
position: 403065
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:404108:-1
position: 404108
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:403065-404108:-1:exon

AWJ20_4740
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4740
product: hypothetical protein
transcript id: XM_018881831.1
SIO_010081: AWJ20_4740
subclass of: SO_0000673
so part of: AWJ20_4740
location: complement(<403065..>404108)
location: region:403065-404108:-1
so has part: feature:403065-404108:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:403065-404108:-1:exon

AWJ20_4740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4740
inference: similar to AA sequence:KEGG_Orthology:K10082
codon start: 1
product: hypothetical protein
translation: MNPVTLLVAVLSLVAGSVEARRRPQTVDVSRFPNTENPFSRTESLAHSMEKPYLDKNFQSRYYDYGGSTFIRGDKYIRLTPDLPDQRGWLMSKIPSMPDNFQIEVEFGIDGQGTSIYGDGMAIWLLNERVTQEGPVFGLRDNFKGTAIFLDTYKNNGPGKVFPYAMIMHGDGQTSYDQAHDGLANEIAGCSVRGLHNGREGNRIRITYVQGKFLSLETDYRGKHKWEKCFETNQVTINKPAFLGFSAQTGELSEYHDIYSIKVYSLDNPPASYAEVDYYLNGNKNAPIHESYSSHSSSSSSSSSSSSSGWGSFFLKTFLFILVVAGGYVGFTLYRAKQRRERDAFYL
SIO_010081: AWJ20_4740
subclass of: SO_0000673
so part of: AWJ20_4740
location: complement(403065..404108)
location: region:403065-404108:-1
so has part: feature:403065-404108:-1:exon

XP_018736270.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:403065-404108:-1:exon

AWJ20_4741
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SKN7
locus tag: AWJ20_4741
so part of: sequence
location: complement(<404681..>406552)
location: region:404681-406552:-1
so has part: feature:404681-406552:-1:exon
subclass of: SO_0000010

30036906
type: Gene
SIO_000068: ncbigene

position:404681:-1
position: 404681
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:406552:-1
position: 406552
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:404681-406552:-1:exon

AWJ20_4741
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SKN7
locus tag: AWJ20_4741
product: kinase-regulated stress-responsive transcription factor SKN7
transcript id: XM_018881832.1
SIO_010081: AWJ20_4741
subclass of: SO_0000673
so part of: AWJ20_4741
location: complement(<404681..>406552)
location: region:404681-406552:-1
so has part: feature:404681-406552:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:404681-406552:-1:exon

AWJ20_4741
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SKN7
locus tag: AWJ20_4741
inference: similar to AA sequence:KEGG_Orthology:K15859
codon start: 1
product: kinase-regulated stress-responsive transcription factor SKN7
translation: MSSGRWDSPNASGSWLDMHMSMGQPPPPGQDQDHDHTDPMDLSQGQDAGHGTSHGQPVRNISPTQQHARNIQVPIQDTHPNNMNMKSELDYTRHQVNPNTGTGPAGPNEPSRESKDFVKKLFTMLEDPTHRHIVRWSNSEDSFVVLDASEFTKEVLPRHFKHSNFASFVRQLNKYDFHKIRANVSKSSGGDNYPDNSWEFHHPDFNPKNKDQLDKIKRKVPGKKVHPAGGVGGSGNSNTPSLTDVNGHGLVSIGQEKVDSISYELENARKLNGFLAARVEQLEDDSRTMSKNLSLIHDAFLMQTSYLQRMLSLLAMNDPNGQFSELLDSLSKDGGYSGISSSVSHELQLQQQKQQHQHLQNQHLQQQQQQTQQQQPPQLTHQLPQIRVPPPQQQPQPPHQLPPQQQQQQQPSQQQQQPTQQSNMPSALPSSATSTSLSPSIPNSNRINQVGTTSESNSQFHVLLADEDDNSVLICRRMLLQYGCEVDVANDGLAAVQRAESTQYDLILMDMILPQLDGMSATELIRHSDQTTPIIAMMSTTDSDGQLDSRTVEKYRSKGVTMILPKPFSKSVLYSTLSIFLKPVSTTTHHPGQPDRLGYMAPSARLRDPTTDSLGSQTKKHRY
SIO_010081: AWJ20_4741
subclass of: SO_0000673
so part of: AWJ20_4741
location: complement(404681..406552)
location: region:404681-406552:-1
so has part: feature:404681-406552:-1:exon

XP_018736271.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:404681-406552:-1:exon

AWJ20_4742
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SCH9
locus tag: AWJ20_4742
so part of: sequence
location: complement(<412627..>414981)
location: region:412627-414981:-1
so has part: feature:412627-414981:-1:exon
subclass of: SO_0000010

30036907
type: Gene
SIO_000068: ncbigene

position:412627:-1
position: 412627
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:414981:-1
position: 414981
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:412627-414981:-1:exon

AWJ20_4742
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SCH9
locus tag: AWJ20_4742
product: serine/threonine protein kinase SCH9
transcript id: XM_018881833.1
SIO_010081: AWJ20_4742
subclass of: SO_0000673
so part of: AWJ20_4742
location: complement(<412627..>414981)
location: region:412627-414981:-1
so has part: feature:412627-414981:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:412627-414981:-1:exon

AWJ20_4742
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SCH9
locus tag: AWJ20_4742
inference: similar to AA sequence:KEGG_Orthology:K08286
codon start: 1
product: serine/threonine protein kinase SCH9
translation: MPDFAKSLFSFGGFSKSSNSSQNSSPTGSANVSPGLHPLKDKPISAVTQSNAAPTFRSSTSSAATALSLGFGRSGGSGSGGSEDQMVLSDEDNGSASGGAGGAGAANSGLATARPSTVDVGGSDSANSNAVVTILGNDTQANGLGAVTTVPEAGLSSVRPMGKLRVRIIEARGLVAQPEGSIPYVVCTYGTSEFISHGPTGTGSGGDPSVSAGAGANSTQPIGIAIPKSRQSSSLTLSKLNNGAHRGAGSNTNPMWKDEAQFDVTSNDGELEVSIYDAKNNDLFLGHARLKPDLTSRVIEKWLTLEPRIQGERVSGEVRVGIFYEKVSKRQYGPQDFEVLRLVGKGTFGQVYQVRKKDTQRIYAMKVLSKKAIVQKKEIAHTIGERNILVRTSSANSAFIVGLKMSFQTPTDLYLVTDYMSGGELFWHLQKEGRFSEQRAKFYIAELIVALEHLHDNDIVYRDLKPENILLDANGHIALCDFGLSKANLNDNGTTNTFCGTTEYLAPEVLLDDQGYTKMVDFWSLGVLVFEMCCGWSPFYAEDNQQMYKNIAFGKVRFPKDALSPDGRNFVKGLLNRNPKHRLGATDDARELRAHPFFSDINWDLLIAKKIPPPFKPQVSSETDTSNFDPEFTQASTSVLHRAFMPVSSTPLSPGIQANFQGFTYVDDSSLDENFRSRLGTSVRPKSHIQHDDDIDLYDDKDIKISESYYNESDLMARSIKRTGPLSGLGPHGSSGLKPPGHSAQGHSQGHNQGHNNDGDYDADVDIMMEDDEHDFVNGQGFEM
SIO_010081: AWJ20_4742
subclass of: SO_0000673
so part of: AWJ20_4742
location: complement(412627..414981)
location: region:412627-414981:-1
so has part: feature:412627-414981:-1:exon

XP_018736272.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:412627-414981:-1:exon

AWJ20_4743
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ALG1
locus tag: AWJ20_4743
so part of: sequence
location: complement(<417173..>418498)
location: region:417173-418498:-1
so has part: feature:417173-418498:-1:exon
subclass of: SO_0000010

30036908
type: Gene
SIO_000068: ncbigene

position:417173:-1
position: 417173
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:418498:-1
position: 418498
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:417173-418498:-1:exon

AWJ20_4743
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ALG1
locus tag: AWJ20_4743
product: chitobiosyldiphosphodolichol beta-1,4 mannosyltransferase
transcript id: XM_018881834.1
SIO_010081: AWJ20_4743
subclass of: SO_0000673
so part of: AWJ20_4743
location: complement(<417173..>418498)
location: region:417173-418498:-1
so has part: feature:417173-418498:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:417173-418498:-1:exon

AWJ20_4743
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ALG1
locus tag: AWJ20_4743
inference: similar to AA sequence:KEGG_Orthology:K03842
note: Mannosyltransferase; involved in asparagine-linked glycosylation in the endoplasmic reticulum (ER); essential for viability, mutation is functionally complemented by human ortholog; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IPI] [PMID 15044395]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 2182636]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0019187 - beta-1,4-mannosyltransferase activity [Evidence IDA] [PMID 6368538]; GO_function: GO:0004578 - chitobiosyldiphosphodolichol beta-mannosyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA,IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0097502 - mannosylation [Evidence IEA]; GO_process: GO:0006490 - oligosaccharide-lipid intermediate biosynthetic process [Evidence IMP] [PMID 7037780]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 6369318]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]
codon start: 1
product: chitobiosyldiphosphodolichol beta-1,4 mannosyltransferase
translation: MNYHALSIAKCGYEVDLCGYKESKLMDEVIENPLITVREIPVVKNAYKLPFVLFAPYKVVKQHWILYDLLKQLKRADFLLVQNPPSIPVLGMVRFFSLFMSPRTKVIIDWHNLGYSILALKFPDNPNHPFVKIYKWYENWFGYRSFVHLTVTVALGQFLRTEFAMNAKRIIPLYDRPASQFSLLSESQRKEIISKYQTTLFKDFDAKTEKILVTSTSYTPDEDLTILLEALEKYSLASNPSSQTTEEKPTSDDNKSESKKSQILTRSSASTQLPPLRVIITGKGPMFKETRAKIDALQPTLHNISIHTTWLPIEDYPKVLGAADLGISLHQSSSGWDLPMKIVDMFGCGVPVISLSFPAISELVKHSENGLIVDTSTDMAKQLAKLFTNPATLNNLKRGAVRESRIKWDTNWTEKLGPLFGVGQYREPAPGEDDSSSSDDD
SIO_010081: AWJ20_4743
subclass of: SO_0000673
so part of: AWJ20_4743
location: complement(417173..418498)
location: region:417173-418498:-1
so has part: feature:417173-418498:-1:exon

XP_018736273.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:417173-418498:-1:exon

AWJ20_4744
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4744
so part of: sequence
location: complement(<419425..>420120)
location: region:419425-420120:-1
so has part: feature:419425-420120:-1:exon
subclass of: SO_0000010

30036909
type: Gene
SIO_000068: ncbigene

position:419425:-1
position: 419425
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:420120:-1
position: 420120
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:419425-420120:-1:exon

AWJ20_4744
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4744
product: calmodulin
transcript id: XM_018881835.1
SIO_010081: AWJ20_4744
subclass of: SO_0000673
so part of: AWJ20_4744
location: complement(<419425..>420120)
location: region:419425-420120:-1
so has part: feature:419425-420120:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:419425-420120:-1:exon

AWJ20_4744
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4744
codon start: 1
product: calmodulin
translation: MWPSPLASASLIISSTSSSVKRSPIVVMTWRNSAAEINPLPSRSNTLNASRISSSESVSFIFRAIMVRNSGKSIVPSLSTSTSWIISDNSLSEGFNAKLLMTVPSSLVVILPGCVRFSRGWGVAFGGWGSAPDPGCSCFAGDGGDSGGNDSSEARGAAGSGAQPQPPEARGERTIVVLIEQRKCLFKRGDLLFGQLVSLFGLLVPVSSLITQPLSPMSRSVISPVTGLKTL
SIO_010081: AWJ20_4744
subclass of: SO_0000673
so part of: AWJ20_4744
location: complement(419425..420120)
location: region:419425-420120:-1
so has part: feature:419425-420120:-1:exon

XP_018736274.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:419425-420120:-1:exon

AWJ20_4745
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CMD1
locus tag: AWJ20_4745
so part of: sequence
location: <419597..>420163
location: region:419597-420163:1
so has part: feature:419597-420163:1:exon
subclass of: SO_0000010

30036910
type: Gene
SIO_000068: ncbigene

position:419597:1
position: 419597
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:420163:1
position: 420163
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:419597-420163:1:exon

AWJ20_4745
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CMD1
locus tag: AWJ20_4745
product: calmodulin
transcript id: XM_018881836.1
SIO_010081: AWJ20_4745
subclass of: SO_0000673
so part of: AWJ20_4745
location: <419597..>420163
location: region:419597-420163:1
so has part: feature:419597-420163:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:419597-420163:1:exon

AWJ20_4745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CMD1
locus tag: AWJ20_4745
inference: similar to AA sequence:KEGG_Orthology:K02183
note: Calmodulin; Ca++ binding protein that regulates Ca++ independent processes (mitosis, bud growth, actin organization, endocytosis, etc.) and Ca++ dependent processes (stress-activated pathways), targets include Nuf1p, Myo2p and calcineurin; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 1639847]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 1639847]; GO_component: GO:0005823 - central plaque of spindle pole body [Evidence IDA] [PMID 8601600]; GO_component: GO:0005823 - central plaque of spindle pole body [Evidence IDA] [PMID 8886974]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 1639847]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 1639847]; GO_component: GO:0005816 - spindle pole body [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IDA] [PMID 3533275]; GO_function: GO:0005509 - calcium ion binding [Evidence IDA] [PMID 8461293]; GO_function: GO:0048306 - calcium-dependent protein binding [Evidence IDA] [PMID 1321337]; GO_function: GO:0048306 - calcium-dependent protein binding [Evidence IPI] [PMID 9756868]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 10749918]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 7925277]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 8247006]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 8294515]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 9450989]; GO_process: GO:0006607 - NLS-bearing protein import into nucleus [Evidence IMP] [PMID 17878171]; GO_process: GO:0007114 - cell budding [Evidence IMP] [PMID 8310294]; GO_process: GO:0007010 - cytoskeleton organization [Evidence IMP] [PMID 8310294]; GO_process: G…
codon start: 1
product: calmodulin
translation: MVRSPRASGGWGCAPDPAAPLASLESLPPESPPSPAKQEQPGSGAEPQPPKATPHPRENLTQPGKITTKELGTVMRSLALNPSESELSDMIHEVDVDNDGTIDFPEFLTMMARKMKDTDSEEEIREAFKVFDRDGNGFISAAELRHVMTTIGERLTEEEVDEMIREADANGDGHIDYNEFVNLLQNTK
SIO_010081: AWJ20_4745
subclass of: SO_0000673
so part of: AWJ20_4745
location: 419597..420163
location: region:419597-420163:1
so has part: feature:419597-420163:1:exon

XP_018736275.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:419597-420163:1:exon

AWJ20_4746
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4746
so part of: sequence
location: <424057..>427372
location: region:424057-427372:1
so has part: feature:424057-427372:1:exon
subclass of: SO_0000010

30036911
type: Gene
SIO_000068: ncbigene

position:424057:1
position: 424057
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:427372:1
position: 427372
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:424057-427372:1:exon

AWJ20_4746
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4746
product: hypothetical protein
transcript id: XM_018881837.1
SIO_010081: AWJ20_4746
subclass of: SO_0000673
so part of: AWJ20_4746
location: join(<424057..424204,424335..>427372)
location: region:424057-427372:1
so has part: feature:424057-424204:1:exon
so has part: feature:424335-427372:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:424057-424204:1:exon

position:424204:1
position: 424204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:424335-427372:1:exon

position:424335:1
position: 424335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

AWJ20_4746
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4746
codon start: 1
product: hypothetical protein
translation: MSSSGIGSFLKESRDKLNDVSAKGKQKYDSGDWKKAPKFSLPSSRIGRQARGATRVWGGAPAAGGNLTPVVEVTNRTSEENERESIQARPLSALTDPSLFPPPPKHRGYENGAPVQPAQPVAPVQPVQAAHPGYGQQQQPQTGYAPSPAAGYGQLPPQAPAQVPGQAPGVAPGQTYQAYGQNQGQLPPQQQQQQPQVQGYNPNPAAGYGQVASPGQPGSYQQQQQLSGYGQPGQLGQPGVIPAPSPPVQQPPQQYGQPQSFQQPPQQQYGQQPAQQQYGQQPAQQQYGQQPAQQQYGQQPAQQQPAPQYGQEYGQQQPAQPYAQQYGQQAPQQIVPQAAPQPTPVEQPPNYPSQNAAPSPAPALSPAPPARPPLPDPTSFPKPPVFGNPASAAINSPNSTTRAPATPGVGAPEDAQSKPVKAPLPDPASFAPPPVFGRPGSAASSAVASPGVNRSSPSKPGAGMPPPPPPRQNLPDPTSFAPPPIYGNPASASYKAPAPQAAAATITATQQPQHQQQQQLPPPVSRQTPTPPASRVSPTPPATRATPPGSATHSTGPRQAPPKPASLKVQPTPPPKPSAFSTSGNTNTVPHPQPARTYPSQQQLPQPLQSQFQGQPQGQPPAYALTDSLNNLSVNDNQNEVQAVPSPSGDSQSSAPQPAVAFAQPGIPNFAAEIAARKTRNSVSHSSTASASPPPISPASTGASINKKAPPPPPKKKPSLSTGSSFSAASTPAPAAPGTGYAHSSVASPPVIAPKPIVPSAPARNHPHTVGVNSSHAPSLPPPINHATRPSVETIARSGSFSDSQVQPEPKEPKRFDFQLATAWFAVPMGQPLHFPPDLSGTEYTYSTSSSGSTRTLKIALRITEDLSVVRFTMTWDESDPVRTCRVTRTDSAVPRLLTGPELVYSHSQYGELVASWAESKMGQQVGNGECWTLAQQAIEQSTHGQAMTSKGLVHGMLIYGTNPAISREEIRRGDIIQFREARFEKRDPTTGRVVSQSLSGAPDHTSVVTSVDSNTIHVVHQNVSNVRRVQPGEYVLSDFVSGDIKIYRVVAKDWVEALSV
SIO_010081: AWJ20_4746
subclass of: SO_0000673
so part of: AWJ20_4746
location: join(424057..424204,424335..427372)
location: region:424057-427372:1
so has part: feature:424057-424204:1:exon
so has part: feature:424335-427372:1:exon

XP_018736276.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:424057-424204:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:424335-427372:1:exon

AWJ20_4747
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4747
so part of: sequence
location: <428316..>429392
location: region:428316-429392:1
so has part: feature:428316-429392:1:exon
subclass of: SO_0000010

30036912
type: Gene
SIO_000068: ncbigene

position:428316:1
position: 428316
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:429392:1
position: 429392
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:428316-429392:1:exon

AWJ20_4747
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4747
product: hypothetical protein
transcript id: XM_018881838.1
SIO_010081: AWJ20_4747
subclass of: SO_0000673
so part of: AWJ20_4747
location: <428316..>429392
location: region:428316-429392:1
so has part: feature:428316-429392:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:428316-429392:1:exon

AWJ20_4747
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4747
inference: similar to AA sequence:KEGG_Orthology:K07119
codon start: 1
product: hypothetical protein
translation: MSLQIKELVLENPPVTETNLVLGQETSTFKEVTSTLDPESLKTGDIVVQPLIFSNDPTQRAWIQKGLDPKRMYVPPVLKGEAMRSLGAGKVIVSKSDKYKVGDIVIGLLSWSNYSLVNELRISTKVSDPNADLPTYLSLVGASGLAAYYGLTEVGRVKPEHTVVVSAASGATGIIAVQYAKHVIGCKKVIGITGSDDKIDHVKKVGADVAVNYKDPEFKKQLSDAIGPDFADVYFDNVGGEILDFMLSKVKPFGVVIACGAIAGYNDHSKGFIRNWGQIITNRLRVEGFIVTDFKDKHAETFVKLFTALQQGKISLSDSINLVDLSSESNSLAKIPEVWGQLFSGNKVGKLLTRVSKI
SIO_010081: AWJ20_4747
subclass of: SO_0000673
so part of: AWJ20_4747
location: 428316..429392
location: region:428316-429392:1
so has part: feature:428316-429392:1:exon

XP_018736277.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:428316-429392:1:exon

AWJ20_4748
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: HRT3
locus tag: AWJ20_4748
so part of: sequence
location: complement(<429684..>431108)
location: region:429684-431108:-1
so has part: feature:429684-431108:-1:exon
subclass of: SO_0000010

30036913
type: Gene
SIO_000068: ncbigene

position:429684:-1
position: 429684
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:431108:-1
position: 431108
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:429684-431108:-1:exon

AWJ20_4748
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: HRT3
locus tag: AWJ20_4748
product: SCF ubiquitin ligase complex subunit HRT3
transcript id: XM_018881839.1
SIO_010081: AWJ20_4748
subclass of: SO_0000673
so part of: AWJ20_4748
location: complement(<429684..>431108)
location: region:429684-431108:-1
so has part: feature:429684-431108:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:429684-431108:-1:exon

AWJ20_4748
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: HRT3
locus tag: AWJ20_4748
inference: similar to AA sequence:KEGG_Orthology:K10295
note: Putative SCF-ubiquitin ligase F-box protein; based on both genetic and physical interactions and sequence similarity; identified in association with Cdc53p, Skp1p and Ubi4 in large and small-scale studies; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA] [PMID 10582239]; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA,IPI] [PMID 14747994]; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IPI] [PMID 17141224]; GO_function: GO:0030674 - protein binding, bridging [Evidence ISA] [PMID 10582239]; GO_function: GO:0030674 - protein binding, bridging [Evidence ISA] [PMID 9635407]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence ISA] [PMID 10582239]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence ISA] [PMID 9635407]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IGI,ISA] [PMID 10582239]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence ISA] [PMID 9635407]; GO_process: GO:0071406 - cellular response to methylmercury [Evidence IMP] [PMID 17141224]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]
codon start: 1
product: SCF ubiquitin ligase complex subunit HRT3
translation: MSELDRFRQAWRSEVQHRHSDGQNSTAPSATSSTATNGRTAASNNAGEAAINRDTTDDISTERALSPTRVITPDSAFRAERPEHVYYNKDLSRTDLDALEAFERAVDSEHTGKLSDAVRHYRDAFRLNERVDKLYREKYYSIKPTHKKPSTKSSGGAESSTKTSTKKSQKVLLGDGTGSVSELSKNLAELSLTAEDEELPCPILQVPVEILSEIFRYLALDDLSSFTKCTYSCKSFAHIGYTTKSIWMALCQQAYSKQHYTEDAVEELCNGNELEAVKKYWGNSFRRMYLERPRIRFDGVYISTCNYLRPGVGDTWNAPIHMVTYYRYCKFYEDGTCINLLTTSEPSDVVPVFTRNITGTAHGTGPTRPSKKQPAVIYTKEDGTVLSRPKGIMSGTWKINGLDGTVLIESEGSVERYTFYMQLQIRSSGHNRHNKLKWVKFWSINNLSDTYGEFSLRHDKAFFFLKRHPAALTT
SIO_010081: AWJ20_4748
subclass of: SO_0000673
so part of: AWJ20_4748
location: complement(429684..431108)
location: region:429684-431108:-1
so has part: feature:429684-431108:-1:exon

XP_018736278.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:429684-431108:-1:exon

AWJ20_4749
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SPA2
locus tag: AWJ20_4749
so part of: sequence
location: <434099..>436300
location: region:434099-436300:1
so has part: feature:434099-436300:1:exon
subclass of: SO_0000010

30036914
type: Gene
SIO_000068: ncbigene

position:434099:1
position: 434099
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:436300:1
position: 436300
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:434099-436300:1:exon

AWJ20_4749
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SPA2
locus tag: AWJ20_4749
product: Spa2p
transcript id: XM_018881840.1
SIO_010081: AWJ20_4749
subclass of: SO_0000673
so part of: AWJ20_4749
location: <434099..>436300
location: region:434099-436300:1
so has part: feature:434099-436300:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:434099-436300:1:exon

AWJ20_4749
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SPA2
locus tag: AWJ20_4749
note: Component of the polarisome; functions in actin cytoskeletal organization during polarized growth; acts as a scaffold for Mkk1p and Mpk1p cell wall integrity signaling components; potential Cdc28p substrate; coding sequence contains length polymorphisms in different strains; SPA2 has a paralog, SPH1, that arose from the whole genome duplication; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 23673619]; GO_component: GO:0051286 - cell tip [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 9214378]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 12361575]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 2647769]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 9214378]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 2647769]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 9214378]; GO_component: GO:0000133 - polarisome [Evidence IDA] [PMID 9632790]; GO_function: GO:0005078 - MAP-kinase scaffold activity [Evidence IDA,IMP] [PMID 12361575]; GO_process: GO:0007121 - bipolar cellular bud site selection [Evidence IMP] [PMID 8909546]; GO_process: GO:0007118 - budding cell apical bud growth [Evidence IGI,IMP] [PMID 10866679]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IMP] [PMID 8013906]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IMP] [PMID 8909546]; GO_process: GO:0036267 - invasive filamentous growth [Evidence IGI] [PMID 9443897]; GO_process: GO:0031382 - mating projection assembly [Evidence IGI] [PMID 9443897]; GO_process: GO:2000251 - positive regulation of actin cytoskeleton reorganization [Evidence IGI,IMP] [PMID 12857882]; GO_process: GO:2000251 - positive regulation of actin cytoskeleton reorganization [Evidence IMP] [PMID 19633059]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 9055077]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PM…
codon start: 1
product: Spa2p
translation: MSSVNYNQPIHSRGPSLDKYSGMTNSHSNSNLYGANGNGNPNTSPNPTDGSIHTTRSSTDDVSIDDTIASYHHTFCQFTGHYNGIWDGSRGDGNGGPSAPGSKARQKLEKLSKVHFSELSTDVYDELVRRVDPLPHETEFLAPRDNIHRKRNQARQKLAMLSPSRFNDLASDILYEIERRYPNLRANPPADRPSISDPNDPNSAKESPALGSTSQSPYLTTRRFSNASAVSNATSRYTSEDYHLRDSVMPPRNSSLNTLGISSPAATPPMPSESAFTHQHNASIVPPLQEEVSIPPSNRSAPLAQPIKSTTIIPTKSTLVEEDDDDDEEGFEDTIDADDEADESAGIANNSTFSSNGSVRNSKRLSMLTPLSDIEEEADAARLAAVAAAANGGVTGDRGVHDVAEDEITRGGSYGNEQDSAGGIEEGEESDDESVSAKLRDRDEQIQMLVAEGSRMDETINNLESRLQESETVKTTLEEENNRLHDMVGELEEQRQKAVDEKESIQKRLEALEQEVEESKAAIAAHEATINSHKETIDKLGDEKKQSEDELSRATGLLTQLREEHANDSDLQQANARHVETIAGHETTIDNLQRELDSTKETHSREIDDLKQQHESQIAELTTSHSTLKDQVDSHANEKEELTKRHQQELDELVNSHSMAIQQYKTEAEEHKANLVLLQESHSALEQEHNNIKDRHAESLSKQNEYAESSATLSNDYLLLQNKLTEHETVSSY
SIO_010081: AWJ20_4749
subclass of: SO_0000673
so part of: AWJ20_4749
location: 434099..436300
location: region:434099-436300:1
so has part: feature:434099-436300:1:exon

XP_018736279.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:434099-436300:1:exon

AWJ20_4750
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SPA2
locus tag: AWJ20_4750
so part of: sequence
location: <436538..>437770
location: region:436538-437770:1
so has part: feature:436538-437770:1:exon
subclass of: SO_0000010

30036916
type: Gene
SIO_000068: ncbigene

position:436538:1
position: 436538
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:437770:1
position: 437770
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:436538-437770:1:exon

AWJ20_4750
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SPA2
locus tag: AWJ20_4750
product: Spa2p
transcript id: XM_018881842.1
SIO_010081: AWJ20_4750
subclass of: SO_0000673
so part of: AWJ20_4750
location: <436538..>437770
location: region:436538-437770:1
so has part: feature:436538-437770:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:436538-437770:1:exon

AWJ20_4750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SPA2
locus tag: AWJ20_4750
note: Component of the polarisome; functions in actin cytoskeletal organization during polarized growth; acts as a scaffold for Mkk1p and Mpk1p cell wall integrity signaling components; potential Cdc28p substrate; coding sequence contains length polymorphisms in different strains; SPA2 has a paralog, SPH1, that arose from the whole genome duplication; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 23673619]; GO_component: GO:0051286 - cell tip [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 9214378]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 12361575]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 2647769]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 9214378]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 2647769]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 9214378]; GO_component: GO:0000133 - polarisome [Evidence IDA] [PMID 9632790]; GO_function: GO:0005078 - MAP-kinase scaffold activity [Evidence IDA,IMP] [PMID 12361575]; GO_process: GO:0007121 - bipolar cellular bud site selection [Evidence IMP] [PMID 8909546]; GO_process: GO:0007118 - budding cell apical bud growth [Evidence IGI,IMP] [PMID 10866679]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IMP] [PMID 8013906]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IMP] [PMID 8909546]; GO_process: GO:0036267 - invasive filamentous growth [Evidence IGI] [PMID 9443897]; GO_process: GO:0031382 - mating projection assembly [Evidence IGI] [PMID 9443897]; GO_process: GO:2000251 - positive regulation of actin cytoskeleton reorganization [Evidence IGI,IMP] [PMID 12857882]; GO_process: GO:2000251 - positive regulation of actin cytoskeleton reorganization [Evidence IMP] [PMID 19633059]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 9055077]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PM…
codon start: 1
product: Spa2p
translation: MRTLAENQRNLEPAEKMAEQIHALKVEVQEWKSRYSRAKGLVRNLRNSAYGGNSVFATPDVGLSNDSPYISTEGRVRDLSVTKFQVAVDEFLTKSRLGTTDLLDNLHNVVVATRHITQDLNGPDDASPVSEKIETELAQCATLVSKTANQLISTTRNHRISGGMAPISILDAVTSDLSFAVIELIKVAKVRRTNNRDNRGSASFSPKEIDVSKASRFSGNSVTSPADMHPAVTPTEDIHMERSDPRRYASTSNQFSTTNFNIEDPDNTISELQGYLEEQTATAIDSIQSLLTAIKDGSSLYVLRHNMLDIIKLVDITVVATSTSMKQTKNWLLKDKGSYILENLRDCSQRMAQLQEETKNIDGDSNPDRQVKQRLAGIAFDMAKFTKELVKTVEEVSLTSEINHIDNQLR
SIO_010081: AWJ20_4750
subclass of: SO_0000673
so part of: AWJ20_4750
location: 436538..437770
location: region:436538-437770:1
so has part: feature:436538-437770:1:exon

XP_018736280.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:436538-437770:1:exon

AWJ20_4751
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: AMD2
locus tag: AWJ20_4751
so part of: sequence
location: complement(<438011..>439675)
location: region:438011-439675:-1
so has part: feature:438011-439675:-1:exon
subclass of: SO_0000010

30036917
type: Gene
SIO_000068: ncbigene

position:438011:-1
position: 438011
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:439675:-1
position: 439675
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:438011-439675:-1:exon

AWJ20_4751
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: AMD2
locus tag: AWJ20_4751
product: Amd2p
transcript id: XM_018881843.1
SIO_010081: AWJ20_4751
subclass of: SO_0000673
so part of: AWJ20_4751
location: complement(<438011..>439675)
location: region:438011-439675:-1
so has part: feature:438011-439675:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:438011-439675:-1:exon

AWJ20_4751
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: AMD2
locus tag: AWJ20_4751
inference: similar to AA sequence:KEGG_Orthology:K01426
note: Putative amidase; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004040 - amidase activity [Evidence IEA]; GO_function: GO:0004040 - amidase activity [Evidence ISS] [PMID 2263500]; GO_function: GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA,IEA]
codon start: 1
product: Amd2p
translation: MVFSYFLHKKTVAAKQKEREDRINDLPEYKEPLTEEEKSILSQEASKVIAKVQAGEIKPISVLRAYGKRALESQPELNAITEIFIKDSEKWAEHANTKGPLAGFPITFKDTINVTGYDSCIGYSSRSFKPAVKDAPIVKLLKDAGAVPMLKTNVPFTLLSFESYNDVWGVTSNPYHKDYAPGGSTGGEAALLAYGGSRLGVGTDVAGSVRVPAHFSGIYSLKCSTGRFPKIGNTTSMAGQEGIPAVYSPMTRSLPDLGFFLKTIIDMKPWEYDYSVHPIPWRKVDLPAKLKVGVIYDDGVVTPSPACARALDLTIDALEKQGHSIVKFDAPDPLRCLRIASQLLCSDAGRIATRGQLWGENNDAGVGRMLFAQRLPRFVKKIYAWILQYIYRDPVWAYMVRDWNEKTITERWDLVAEREQYKLEFFEAWKESGIDILLTVPNATPALPHKGLYESISSCGYTFMFNLLDYSAGVLPVTRVDKEKDQLPPGFNPNKLNRIAKGAYDNYDATKMHGLPVGVQVVGQRLEEEKVIKAMEVVEDALHKSGVVYVQRNS
SIO_010081: AWJ20_4751
subclass of: SO_0000673
so part of: AWJ20_4751
location: complement(438011..439675)
location: region:438011-439675:-1
so has part: feature:438011-439675:-1:exon

XP_018736281.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:438011-439675:-1:exon

AWJ20_4752
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4752
so part of: sequence
location: complement(<442508..>442924)
location: region:442508-442924:-1
so has part: feature:442508-442924:-1:exon
subclass of: SO_0000010

30036918
type: Gene
SIO_000068: ncbigene

position:442508:-1
position: 442508
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:442924:-1
position: 442924
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:442508-442924:-1:exon

AWJ20_4752
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4752
product: gluconokinase
transcript id: XM_018881844.1
SIO_010081: AWJ20_4752
subclass of: SO_0000673
so part of: AWJ20_4752
location: complement(<442508..>442924)
location: region:442508-442924:-1
so has part: feature:442508-442924:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:442508-442924:-1:exon

AWJ20_4752
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4752
inference: similar to AA sequence:KEGG_Orthology:K00851
note: Putative gluconokinase; sequence similarity to bacterial and human gluconokinase; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; upregulated by deletion of the RNAP-II associated factor, PAF1; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0046316 - gluconokinase activity [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0046177 - D-gluconate catabolic process [Evidence IEA]; GO_process: GO:0019521 - D-gluconate metabolic process [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]
codon start: 1
product: gluconokinase
translation: MSNGIPLTDDDRWDWLADVAATSSRAAAGNESTYIAVAACSALTPKYREFLKSKVLPGTRIVIAFMWAPEEVLVARVGARKNHYMGTNMVASQAALMQVPKDEELLENGGFSIPMSTVDQDPTFIAGEVVKKVNAFLK
SIO_010081: AWJ20_4752
subclass of: SO_0000673
so part of: AWJ20_4752
location: complement(442508..442924)
location: region:442508-442924:-1
so has part: feature:442508-442924:-1:exon

XP_018736282.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:442508-442924:-1:exon

AWJ20_4753
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MRPL15
locus tag: AWJ20_4753
so part of: sequence
location: complement(<443791..>444552)
location: region:443791-444552:-1
so has part: feature:443791-444552:-1:exon
subclass of: SO_0000010

30036919
type: Gene
SIO_000068: ncbigene

position:443791:-1
position: 443791
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:444552:-1
position: 444552
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:443791-444552:-1:exon

AWJ20_4753
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MRPL15
locus tag: AWJ20_4753
product: mitochondrial 54S ribosomal protein YmL15
transcript id: XM_018881845.1
SIO_010081: AWJ20_4753
subclass of: SO_0000673
so part of: AWJ20_4753
location: complement(<443791..>444552)
location: region:443791-444552:-1
so has part: feature:443791-444552:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:443791-444552:-1:exon

AWJ20_4753
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MRPL15
locus tag: AWJ20_4753
inference: similar to AA sequence:KEGG_Orthology:K17437
note: Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004525 - ribonuclease III activity [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0090501 - RNA phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]
codon start: 1
product: mitochondrial 54S ribosomal protein YmL15
translation: MYLRQIPRSLRPFQPLGRLVVGESAGISHGQLAFKSQQTQQVRTLVYTKDGVVRARGLKKNEEEYLTVNGVTYPGNEDTLKDAKTFLGEEYSLPDPVILQTITHKSFAHGKKPYNEKLAILGKEFLRLQASHYAVSQTNDNPHAINKHNFDISPQPIEVLSSSVALHEVCKKTGIHKNIFWKKRISENTSTGQELDAKFTGEQSVFARSIHALIGAILLRHGEPKARKFISEKLLSGPYSLISVSEKVYAPRP
SIO_010081: AWJ20_4753
subclass of: SO_0000673
so part of: AWJ20_4753
location: complement(443791..444552)
location: region:443791-444552:-1
so has part: feature:443791-444552:-1:exon

XP_018736283.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:443791-444552:-1:exon

AWJ20_4754
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ROK1
locus tag: AWJ20_4754
so part of: sequence
location: <445059..>446798
location: region:445059-446798:1
so has part: feature:445059-446798:1:exon
subclass of: SO_0000010

30036920
type: Gene
SIO_000068: ncbigene

position:445059:1
position: 445059
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:446798:1
position: 446798
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:445059-446798:1:exon

AWJ20_4754
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ROK1
locus tag: AWJ20_4754
product: RNA-dependent ATPase ROK1
transcript id: XM_018881846.1
SIO_010081: AWJ20_4754
subclass of: SO_0000673
so part of: AWJ20_4754
location: <445059..>446798
location: region:445059-446798:1
so has part: feature:445059-446798:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:445059-446798:1:exon

AWJ20_4754
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ROK1
locus tag: AWJ20_4754
inference: similar to AA sequence:KEGG_Orthology:K14779
note: RNA-dependent ATPase; involved in pre-rRNA processing at sites A0, A1, and A2, and in control of cell cycle progression; contains two upstream open reading frames (uORFs) in 5' untranslated region which regulate translation; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 9154839]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA] [PMID 23153376]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 18975973]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 23153376]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9154839]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9154839]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9154839]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0048254 - snoRNA localization [Evidence IMP] [PMID 18833290]
codon start: 1
product: RNA-dependent ATPase ROK1
translation: MDIFKLLSRGATIQRNGKHQKDLELFNPNATAAKEVAAGSDSVDLKIAKEIDFFKNASKADKKAKKVSSETNNKDKKVKQSNKNVIDNRNDEDDEEDDAVSVPLSITSPEEASVQRKKFKIKTTGDDIPLPIGSFEDLTTRFQLHRHLLRNLEQQNFSSPTAIQSESIPILLHGRDLIACAPTGSGKTLAFSIPLVQSLKEHKTTGIRCLIVSPTKELATQIYNEVVKLSRGRDLNICILTKAAAAKFRNDALSRQKFDILITTPLRLVDAVKSEIIDLSHVQHLVLDEADKLFEQGFLEQTDDILAACSNPRLQKALFSATIPSGVEEMAKTIMHSPIRIIVGHKEGASHDIDQKLVYAGNEQGKLIAIRQMITGGEVVPPVIIFVQSIQRAKALFHELLYDKVNVDAIHGERTQNQRDKVIERFKQGEIWVLICTDVLSRGIDFRGVNLVINYDVPQSSQSYVHRIGRTGRAGRAGKAVTFFTKDDHDAVKNVVNVMKQSGCDVGDWMLKMKKITKNDKKQLKKKPVERTEISTVPSVIRQKRKQRRDMVEASKKRKLHSTDDGPASAEQSSDEASD
SIO_010081: AWJ20_4754
subclass of: SO_0000673
so part of: AWJ20_4754
location: 445059..446798
location: region:445059-446798:1
so has part: feature:445059-446798:1:exon

XP_018736284.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:445059-446798:1:exon

AWJ20_4755
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ATP20
locus tag: AWJ20_4755
so part of: sequence
location: complement(<447044..>447526)
location: region:447044-447526:-1
so has part: feature:447044-447526:-1:exon
subclass of: SO_0000010

30036921
type: Gene
SIO_000068: ncbigene

position:447044:-1
position: 447044
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:447526:-1
position: 447526
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:447044-447526:-1:exon

AWJ20_4755
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ATP20
locus tag: AWJ20_4755
product: F1F0 ATP synthase subunit g
transcript id: XM_018881847.1
SIO_010081: AWJ20_4755
subclass of: SO_0000673
so part of: AWJ20_4755
location: complement(<447044..>447526)
location: region:447044-447526:-1
so has part: feature:447044-447526:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:447044-447526:-1:exon

AWJ20_4755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ATP20
locus tag: AWJ20_4755
inference: similar to AA sequence:KEGG_Orthology:K02140
note: Subunit g of the mitochondrial F1F0 ATP synthase; reversibly phosphorylated on two residues; unphosphorylated form is required for dimerization of the ATP synthase complex, which in turn determines oligomerization of the complex and the shape of inner membrane cristae; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0000276 - mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO_component: GO:0000276 - mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IMP,IPI,ISS] [PMID 10336613]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO_function: GO:0015078 - hydrogen ion transmembrane transporter activity [Evidence IEA]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IDA] [PMID 20691145]; GO_function: GO:0005198 - structural molecule activity [Evidence IMP,IPI] [PMID 9857174]; GO_process: GO:0006754 - ATP biosynthetic process [Evidence IEA]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IEA]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IMP,ISS] [PMID 10336613]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IDA] [PMID 20691145]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IMP,IPI] [PMID 9857174]; GO_process: GO:0042407 - cristae formation [Evidence IMP] [PMID 19528297]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0006461 - protein complex assembly [Evidence IMP] [PMID 17761666]; GO_process: GO:0035786 - protein complex oligomerization [Evidence IMP] [PMID 16551625]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process…
codon start: 1
product: F1F0 ATP synthase subunit g
translation: MLRNQLLNNSRLIARRSVRYNSTASQASSAVSKASSAVSTITSKAAGFVNCSIYWAKVVAELGKHIYVKEGLSPPSGTQFQSVYKNLWQQILTQSKHFANSPAQLVDTVTGVSRQQVVAGGAYLVQFAGLFALGEIIGRRNVFGYPHHHVEEEAEHAAEH
SIO_010081: AWJ20_4755
subclass of: SO_0000673
so part of: AWJ20_4755
location: complement(447044..447526)
location: region:447044-447526:-1
so has part: feature:447044-447526:-1:exon

XP_018736285.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:447044-447526:-1:exon

AWJ20_4756
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4756
so part of: sequence
location: <448978..>450198
location: region:448978-450198:1
so has part: feature:448978-450198:1:exon
subclass of: SO_0000010

30036922
type: Gene
SIO_000068: ncbigene

position:448978:1
position: 448978
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:450198:1
position: 450198
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:448978-450198:1:exon

AWJ20_4756
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4756
product: hypothetical protein
transcript id: XM_018881848.1
SIO_010081: AWJ20_4756
subclass of: SO_0000673
so part of: AWJ20_4756
location: <448978..>450198
location: region:448978-450198:1
so has part: feature:448978-450198:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:448978-450198:1:exon

AWJ20_4756
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4756
codon start: 1
product: hypothetical protein
translation: MTFQVDPIKDAQYNIHPFTHVHETSDKTLDYVDLVAIDLSKYTDTPEGQESRRALAKQLHNALSTYGFFYVTGHGIEKERIDHLYSVAQSILELPDEIKYKHLAGALRSDDEDRSVSLGAERGGGFKPRQYWAMKNGVRDQIEHYNFLDLLHDKLMTEQNHPEIAKAYLEEVAEYYRLLHHTVLKKITVLCDIILEIPEGTIWEKNFKVVPEDRDASGSGFGRFMMYHGMSPEDEAKTDDTWLRGHSDSTAFTFITSQPMASLQIRDYYTGKWRYIPYLPNAFVVNIGDAMEFITGGYFKSTIHRVVKPPADQLYNRRLGLIYFSKPSAKSVIDPEAVNSPLLERLGYTKPEEWDRIEYAKWDDEKGRLFGRKDLNNTQTDEPLPVKLYGRYAERWHQASGPKVFT
SIO_010081: AWJ20_4756
subclass of: SO_0000673
so part of: AWJ20_4756
location: 448978..450198
location: region:448978-450198:1
so has part: feature:448978-450198:1:exon

XP_018736286.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:448978-450198:1:exon

AWJ20_4757
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: FMO1
locus tag: AWJ20_4757
so part of: sequence
location: <450577..>452274
location: region:450577-452274:1
so has part: feature:450577-452274:1:exon
subclass of: SO_0000010

30036923
type: Gene
SIO_000068: ncbigene

position:450577:1
position: 450577
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:452274:1
position: 452274
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:450577-452274:1:exon

AWJ20_4757
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: FMO1
locus tag: AWJ20_4757
product: Fmo1p
transcript id: XM_018881849.1
SIO_010081: AWJ20_4757
subclass of: SO_0000673
so part of: AWJ20_4757
location: <450577..>452274
location: region:450577-452274:1
so has part: feature:450577-452274:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:450577-452274:1:exon

AWJ20_4757
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: FMO1
locus tag: AWJ20_4757
note: Flavin-containing monooxygenase; localized to the cytoplasmic face of the ER membrane; catalyzes oxidation of biological thiols to maintain the ER redox buffer ratio for correct folding of disulfide-bonded proteins; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 10077572]; GO_function: GO:0004499 - N,N-dimethylaniline monooxygenase activity [Evidence IEA]; GO_function: GO:0004499 - N,N-dimethylaniline monooxygenase activity [Evidence IDA] [PMID 10600176]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0004497 - monooxygenase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006457 - protein folding [Evidence IDA] [PMID 10077572]
codon start: 1
product: Fmo1p
translation: MNVKRIAIIGAGPAGAAGLDSFLSHGFTDIRVFERRPLPGGTWVGDTELGFASNTGNTVPPIDDEVGDVPVEIPPEAASATEESPYVRKATIKARRFDEPTLYSQLETNILPELMSFKRRSMPKNLLSNSVSKYENEDVFRSYKTIQEYVGEFFTGENEKYVSYNTSVEQAEQPDGPGTKWVLTLKRQNGQNNNEEWWTEEFDGVYAASGRYNVPRVSHINGLDEVAKAVPQGVIEHTKWFRGAESYKGKKVLIVGASVSTTDIIQLVKETAQLPLYLSVRHVAPAYRAGFEQPFVDGRGSITSVSLNESGKSIDVIFEDGSTVTNIEKLVLATGYNFSYPYLEKYTQKFGGIVRNNVLHNVFLTTWWSEDPTLVLPGVFTEGINFRCMETQAMATAALWSGFPGSGFPSKEICVQWEADRRKFKTPAQWHFWFPHFDNIIEAIAKVGGGYKALCEFAGITSSDLKTFVPVYEKGIAFKCLFFTKVANEYMLKHPKTLQQYNQTVALLKTKTVEPDPTAAEADHELFKRLFVNWSGGRGEPKIPSKIQTTELSEKTPVVTEVAVK
SIO_010081: AWJ20_4757
subclass of: SO_0000673
so part of: AWJ20_4757
location: 450577..452274
location: region:450577-452274:1
so has part: feature:450577-452274:1:exon

XP_018736287.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:450577-452274:1:exon

AWJ20_4758
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: DUS1
locus tag: AWJ20_4758
so part of: sequence
location: <452728..>454086
location: region:452728-454086:1
so has part: feature:452728-454086:1:exon
subclass of: SO_0000010

30036924
type: Gene
SIO_000068: ncbigene

position:452728:1
position: 452728
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:454086:1
position: 454086
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:452728-454086:1:exon

AWJ20_4758
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: DUS1
locus tag: AWJ20_4758
product: Dus1p
transcript id: XM_018881850.1
SIO_010081: AWJ20_4758
subclass of: SO_0000673
so part of: AWJ20_4758
location: <452728..>454086
location: region:452728-454086:1
so has part: feature:452728-454086:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:452728-454086:1:exon

AWJ20_4758
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: DUS1
locus tag: AWJ20_4758
inference: similar to AA sequence:KEGG_Orthology:K05542
note: Dihydrouridine synthase; member of a widespread family of conserved proteins including Smm1p, Dus3p, and Dus4p; modifies pre-tRNA(Phe) at U17; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IEA]; GO_function: GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IDA] [PMID 12003496]; GO_function: GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IMP] [PMID 14970222]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0002943 - tRNA dihydrouridine synthesis [Evidence IEA]; GO_process: GO:0006400 - tRNA modification [Evidence IDA] [PMID 12003496]; GO_process: GO:0006400 - tRNA modification [Evidence IMP] [PMID 14970222]; GO_process: GO:0008033 - tRNA processing [Evidence IEA,IEA]
codon start: 1
product: Dus1p
translation: MTVSQAATPEPEVVTKTAAPVKTVVERPSEFTVENKLTGRDLLKSVGFPKTIVAPMVDQSELAWRLISRKYGADLCYTPMFHARLFGEDKRYREDQFGPLDGDANVDRPLIVQFCANDPEELLKAAKYVVGRCDAVDLNLGCPQGIAKKGKYGAFLMEDWDLIYRLINILHTKLEIPVTAKIRIYETKEKTLEYAKMVLSAGAQFLTVHGRTREMKGQLTGLADWSYIRYVRDNLPPDTVIFANGNVLYSEDIDRSLEATKADAVMSAESNLYNPGVFNVNKPGIDDQFPRVDKLLREYFETAKSTPGNASQTSMKSHFFKVLQSFLPKHLNIRNAIGPIRKGQYDQFEDVVKQVEEIVEGIYEKVNKGELEDKVITLPDGYKSVPYWRCQPYFRVVNGVLSNGKRKADVDPEAAQRKKEAKLEKEKAAAALASLSSDGPQPTGDEAPEPSN
SIO_010081: AWJ20_4758
subclass of: SO_0000673
so part of: AWJ20_4758
location: 452728..454086
location: region:452728-454086:1
so has part: feature:452728-454086:1:exon

XP_018736288.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:452728-454086:1:exon

AWJ20_4759
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: cwf15
locus tag: AWJ20_4759
so part of: sequence
location: complement(<455674..>456630)
location: region:455674-456630:-1
so has part: feature:455674-456630:-1:exon
subclass of: SO_0000010

30036925
type: Gene
SIO_000068: ncbigene

position:455674:-1
position: 455674
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:456630:-1
position: 456630
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:455674-456630:-1:exon

AWJ20_4759
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: cwf15
locus tag: AWJ20_4759
product: complexed with Cdc5 protein Cwf15
transcript id: XM_018881851.1
SIO_010081: AWJ20_4759
subclass of: SO_0000673
so part of: AWJ20_4759
location: complement(<455674..>456630)
location: region:455674-456630:-1
so has part: feature:455674-456630:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:455674-456630:-1:exon

AWJ20_4759
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: cwf15
locus tag: AWJ20_4759
inference: similar to AA sequence:KEGG_Orthology:K12863
codon start: 1
product: complexed with Cdc5 protein Cwf15
translation: MTTAHRPTFDPARGQKNTQISGSIVHTRMLPAHTQLKFRKRGQGGAADADAHGTDGGKRDFKRELLLAENESKQSNGKKRGLVEYDAEEEEAADVGSSRKRREISDGSVSKSVPLLKGDETSNSLHNGDEEKNNENIPEDESDSDVGDTDGYDSKARNEDEDEEYRRRILEKYKDIDADSDSDGDDDDEEKDEDDDDDEDEDDDDDDDDEEDETVMLMRELEKIKKEKALEKQRLEEIAARKAEEEREREIAYGNPLMNPATKDGKDSFAVKRSWMEDTVFKNQASSLAANQSEPKKELINDLLRSDFHKKFMDRYIK
SIO_010081: AWJ20_4759
subclass of: SO_0000673
so part of: AWJ20_4759
location: complement(455674..456630)
location: region:455674-456630:-1
so has part: feature:455674-456630:-1:exon

XP_018736289.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:455674-456630:-1:exon

AWJ20_4760
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: NBP2
locus tag: AWJ20_4760
so part of: sequence
location: <459024..>460070
location: region:459024-460070:1
so has part: feature:459024-460070:1:exon
subclass of: SO_0000010

30036927
type: Gene
SIO_000068: ncbigene

position:459024:1
position: 459024
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:460070:1
position: 460070
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:459024-460070:1:exon

AWJ20_4760
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: NBP2
locus tag: AWJ20_4760
product: Nbp2p
transcript id: XM_018881853.1
SIO_010081: AWJ20_4760
subclass of: SO_0000673
so part of: AWJ20_4760
location: <459024..>460070
location: region:459024-460070:1
so has part: feature:459024-460070:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:459024-460070:1:exon

AWJ20_4760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: NBP2
locus tag: AWJ20_4760
note: Protein involved in the HOG (high osmolarity glycerol) pathway; negatively regulates Hog1p by recruitment of phosphatase Ptc1p the Pbs2p-Hog1p complex; interacts with Bck1p and down regulates the cell wall integrity pathway; found in the nucleus and cytoplasm, contains an SH3 domain and a Ptc1p binding domain (PBM); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14573466]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006972 - hyperosmotic response [Evidence IMP,IPI] [PMID 14685261]; GO_process: GO:0000200 - inactivation of MAPK activity involved in cell wall organization or biogenesis [Evidence IMP,IPI] [PMID 22570491]; GO_process: GO:0006469 - negative regulation of protein kinase activity [Evidence IDA] [PMID 14685261]; GO_process: GO:0009408 - response to heat [Evidence IMP] [PMID 14573466]
codon start: 1
product: Nbp2p
translation: MAAKPPSPIASSAFQSGASHDISVLQDVLSGVSQPHDSKTDVVSENLDSKHQQLEHTDNDSPENNSDVAHQNVDAKGSVVYQDLEEIPNFHSALSYATVRDFAYPEFHPLHYGVPEFEQASGETDDDEDYEPTYEYNDTYDANDPHSHYYNDKSAGFEDGPPWQQDSDLNSPVIKSHEVGDRISKEYQFSVASADEIHGRAVALFDFTPENDNEAPLQEGQIVWISYRHGQGWLVAEDPETGETGLVPEEYVQLLNSISYEEDILQDSSEPAIYQSPESDSEGWVDEAEPEGDAAEPATEPVVKSASDTDYTDLKKGIKDLSLRESEEHEHNQTEPETAEVYSQVPSE
SIO_010081: AWJ20_4760
subclass of: SO_0000673
so part of: AWJ20_4760
location: 459024..460070
location: region:459024-460070:1
so has part: feature:459024-460070:1:exon

XP_018736290.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:459024-460070:1:exon

AWJ20_4761
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4761
so part of: sequence
location: complement(<460379..>461458)
location: region:460379-461458:-1
so has part: feature:460379-461458:-1:exon
subclass of: SO_0000010

30036928
type: Gene
SIO_000068: ncbigene

position:460379:-1
position: 460379
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:461458:-1
position: 461458
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:460379-461458:-1:exon

AWJ20_4761
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4761
product: hypothetical protein
transcript id: XM_018881854.1
SIO_010081: AWJ20_4761
subclass of: SO_0000673
so part of: AWJ20_4761
location: complement(<460379..>461458)
location: region:460379-461458:-1
so has part: feature:460379-461458:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:460379-461458:-1:exon

AWJ20_4761
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4761
codon start: 1
product: hypothetical protein
translation: MDTVQQARKLLESSEAAKCLELALPVLDSQSSDDVKLEALHLIGEAYLENGDPKNAFECFSKCAELDPDGSKGGMEKFLWLGQLSGGEPGLKWFEKGLHGLRNALTEVNNKAASSSKVNGDNDLQMQFQVKLLHKKINEALCGMIEVWMTDLCMEPEAESQCEKLIAEALLLDEEIPESWSMLGSIRISQQRNDDAREALERSWQLFQAVGDGSIDELPSLIRLAQNMMEMGQHQYVLDVTKRIHVMDDQVVDSFYLNGLAHNELYKEIRDGPDAESKSRIAARHIAGARDAWTLLLNLTNTGDVEVDDELVSSVQELLTTLPEVGDDDFSSSSEEEDEDMEDDDDKVDLKDLDSDEEL
SIO_010081: AWJ20_4761
subclass of: SO_0000673
so part of: AWJ20_4761
location: complement(460379..461458)
location: region:460379-461458:-1
so has part: feature:460379-461458:-1:exon

XP_018736291.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:460379-461458:-1:exon

AWJ20_4762
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RLF2
locus tag: AWJ20_4762
so part of: sequence
location: complement(<461752..>464247)
location: region:461752-464247:-1
so has part: feature:461752-464247:-1:exon
subclass of: SO_0000010

30036929
type: Gene
SIO_000068: ncbigene

position:461752:-1
position: 461752
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:464247:-1
position: 464247
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:461752-464247:-1:exon

AWJ20_4762
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RLF2
locus tag: AWJ20_4762
product: Rlf2p
transcript id: XM_018881855.1
SIO_010081: AWJ20_4762
subclass of: SO_0000673
so part of: AWJ20_4762
location: complement(<461752..>464247)
location: region:461752-464247:-1
so has part: feature:461752-464247:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:461752-464247:-1:exon

AWJ20_4762
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RLF2
locus tag: AWJ20_4762
note: Largest subunit (p90) of the Chromatin Assembly Complex (CAF-1); chromatin assembly by CAF-1 is important for multiple processes including silencing at telomeres, mating type loci, and rDNA; maintenance of kinetochore structure; deactivation of the DNA damage checkpoint after DNA repair; and chromatin dynamics during transcription; GO_component: GO:0033186 - CAF-1 complex [Evidence IDA] [PMID 9030687]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IDA] [PMID 11782447]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9030688]; GO_function: GO:0042393 - histone binding [Evidence IDA] [PMID 16503640]; GO_process: GO:0006335 - DNA replication-dependent nucleosome assembly [Evidence IDA] [PMID 9030687]; GO_process: GO:0006335 - DNA replication-dependent nucleosome assembly [Evidence IMP] [PMID 9030688]
codon start: 1
product: Rlf2p
translation: MLSLQAKTGPMSPKDTNIVSGKSIDNATPRDPVETVKTKLCKRDRDNDIGQGQENSGIPIKNSQSKNQDSSLSNIESNTHERSSKDKTVKAKESSTTSAPDTSKQSELPSQKTNPSVTQSDSPVNWTGANQNIVMMPNNVPMNVQGMTPNMVPPPNMIFTNMLASGMIPPNMIPPGMVPANMISPNAIPPTTIPLNMIPPQMIPPHMLPPNMVSPPFLPSGMIPVSTIQDGESTPSPERPNKKQKIGKTKEEREQERLDKENERLAKLEAEQQKKAEKMAEKMAEKQRREEEKEEKKRQKEEEKRLKEEEKRLKEAAKEEEKRQKEEEKRLKEAAKEEERRQKEEEKRLKEEAKEQARLKEERKQLRMDRFFKKVQKPTSAETPAGSSESKEARSFSSSIIDDSNNSSLNATKSTASESTASVESSSNGSENSTEESKADLNTSPCTFDEIFLPFHIKVDTTLCARDSWIEKRARNELPSTDIDIFLKTNKQQRGFSPDKTTVEIIQLMNTGSLTESRVMELLNKLPRRHLKFAENIRPPYVGTFSKPTPRIMVIQPWKRFIAPQDTNPETLVSTTDLIPDTTRVELGNSLLSINYDYDSDYDWVNDNEEGDEEIGEDIGEEDESESDDDDNEMAGFVEDESDTPTPSSSSDEGSPTNTNRRRIIGPLASLVAWNDGTEPHIFDHMETALLIDLKGDASIDPFKDYWASSPAEATAVGTALPSTASPTSSATATPAKLIPDHLLRDFLTKIQGSDKNQTLLVETLKIEFNSVSKSTIRDTIKACAKRVGAKENDKRWVINPPFADKYGILTAPTTNSTSTTRQASPFLAGN
SIO_010081: AWJ20_4762
subclass of: SO_0000673
so part of: AWJ20_4762
location: complement(461752..464247)
location: region:461752-464247:-1
so has part: feature:461752-464247:-1:exon

XP_018736292.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:461752-464247:-1:exon

AWJ20_4763
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: VPS70
locus tag: AWJ20_4763
so part of: sequence
location: complement(<465594..>468080)
location: region:465594-468080:-1
so has part: feature:465594-468080:-1:exon
subclass of: SO_0000010

30036930
type: Gene
SIO_000068: ncbigene

position:465594:-1
position: 465594
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:468080:-1
position: 468080
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:465594-468080:-1:exon

AWJ20_4763
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: VPS70
locus tag: AWJ20_4763
product: Vps70p
transcript id: XM_018881856.1
SIO_010081: AWJ20_4763
subclass of: SO_0000673
so part of: AWJ20_4763
location: complement(<465594..>468080)
location: region:465594-468080:-1
so has part: feature:465594-468080:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:465594-468080:-1:exon

AWJ20_4763
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: VPS70
locus tag: AWJ20_4763
inference: similar to AA sequence:KEGG_Orthology:K01301
note: hypothetical protein involved in vacuolar protein sorting; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA,IEA]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 12134085]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Vps70p
translation: MVVVRVDEESQSLIRGPNGLKVRKRRASCLRFGCYTLLGVFFLAVFNVIFLPRTSISRDWNRLHSIKVSDADVKRTLFQSVNASSIRDWSYKYTQEPHLAGTNYGLVEWTRDKFEEYGIPAEIVSYDIYLNYPRDHAVKLLNEDGSVQFSASLEEAVIEEDPTTSREDRVPTFHGYSASGNVTGQLIYVNYGTREDYDQLIAKGVDFKGKIVIARYGGIFRGLKVKFAQDLGAIGALLYSDPGDDGGITIKNGYEAYPNGPARHPSSVQRGSVQFLSLGPGDPTTPGWASKPDSKRVDPYDTIPSIPSIPISYEDALPLLKAINGKGLKGSDLGENWVGELTDEFDYSVGPSTLEVNLYNDQDYDIRPTYNVIGKIEGIISDEAIVIGNHRDAWIAGGAGDPNSGSAALIELAKAFGELKKIGWKPSRTIILGSWDGEEYGLLGSTEWGEDNAEYLQHHVIAYLNVDVAFSGSRFGASASPLLDNVLIDVTKQVPAPSGNGTLYDLWYSQNGARISSLGSGSDYTVFQDYLGIPSVDFGFGGGKGDPVYQYHSNYDSFYWMDKFGDKDFAHHSVMVKAWGLLTLTLSETELIPFKLASYAKLLDTYLEKTESQLPKEIFDDGDDEYDDDDDFDFDFSEEMSVDMAVAIANADSSALASVNPVSSTDVSDTEVDAQQIFTRPKHRKPKHPKRKLHKEARKAFEKLRKEVDKFKTRARKYDAYTERLQEEFTQDYAWFYSYKKLILLVKIKVANIKLAQIEQLFTYDKGLDNGRSWFKHVVFAPGINTGYAGALLPGLTEAIDARDPSAILKWATIIRASVTSVNALVSK
SIO_010081: AWJ20_4763
subclass of: SO_0000673
so part of: AWJ20_4763
location: complement(465594..468080)
location: region:465594-468080:-1
so has part: feature:465594-468080:-1:exon

XP_018736293.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:465594-468080:-1:exon

AWJ20_4764
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: slx4
locus tag: AWJ20_4764
so part of: sequence
location: complement(<468452..>471052)
location: region:468452-471052:-1
so has part: feature:468452-471052:-1:exon
subclass of: SO_0000010

30036931
type: Gene
SIO_000068: ncbigene

position:468452:-1
position: 468452
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:471052:-1
position: 471052
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:468452-471052:-1:exon

AWJ20_4764
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: slx4
locus tag: AWJ20_4764
product: structure-specific endonuclease subunit
transcript id: XM_018881857.1
SIO_010081: AWJ20_4764
subclass of: SO_0000673
so part of: AWJ20_4764
location: complement(<468452..>471052)
location: region:468452-471052:-1
so has part: feature:468452-471052:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:468452-471052:-1:exon

AWJ20_4764
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: slx4
locus tag: AWJ20_4764
codon start: 1
product: structure-specific endonuclease subunit
translation: MEDVVLVSSTGIDTSSPNSLSNNSPVHSRLTRTISKFAFEGSVSNITTTTTTTTKTGSFVSSAVELETLDAQHVTITTTVSKELTVNHSPQASKEKKKKRKKSATTKSSETSKKSVVKKTRKPKEKVPATLNERMVAIFEKSALITVPDEYRGNVDPSHHGIDITRNDSNGYYINNNDRSENNDNKDENKNSYYNETNDKSQQDDRMAASISSTIARHDISANNRPFNFGCDIQLNDPDYDNARLLSGKPGKVRALRRNRQNQEKQDRASGQSKRLKPSYQLEAVPKPQIPADFLVSVEEGCQNIKQLKLIFPDTPKPKRHCSSQRNNSAETISPVRNRTSFNREKRGSESLTMFDLASRIPSDILSQEMRMLDSRSEKENIFDEEVPEAGDTDSDESPEIAVSTSSKLAAVSVLTPNRSLVSGSGKSITNSRAEFDDGVQVLTKNVHPRRVLTPLLNSEVRSQSDPFVASRSGDDRTSQNAISLPRSKRQDSNTEKNSFVEIYEISDSENDYGSPLVLSQQRPTNLLCNSPIRQLSAATIITISSSPIHNETGPSKPDKLNSIDTFDEFHSSSPPRASLSISSARRLTLEPDKISDRLANSTDDSYSFNSVDEVPQSPGYADSENLLEYAPYIMTVGEPYKDIISGSPPNRCSQPISIPSSSISTFSSFGSQDDTANSNVPITDIHSEPQTTDFVDPTPLTDKTADELPPRTENVDYKSIYEAMPLDELRRTVDKYGFKPRRSRQAMIELLLSCHTDTTDIPSIAAVSQPSTSMPNSDSDMRSKLFTRISTQIRTNPLAKPWWTKMLLYEPLPLESFQRFLQQTLSIDLDLELVRSWCDHCGVCTRASDPTHSDTPSSQTSETEV
SIO_010081: AWJ20_4764
subclass of: SO_0000673
so part of: AWJ20_4764
location: complement(468452..471052)
location: region:468452-471052:-1
so has part: feature:468452-471052:-1:exon

XP_018736294.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:468452-471052:-1:exon

AWJ20_4765
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CPR1
locus tag: AWJ20_4765
so part of: sequence
location: complement(<471658..>472089)
location: region:471658-472089:-1
so has part: feature:471658-472089:-1:exon
subclass of: SO_0000010

30036932
type: Gene
SIO_000068: ncbigene

position:471658:-1
position: 471658
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:472089:-1
position: 472089
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:471658-472089:-1:exon

AWJ20_4765
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CPR1
locus tag: AWJ20_4765
product: peptidylprolyl isomerase CPR1
transcript id: XM_018881858.1
SIO_010081: AWJ20_4765
subclass of: SO_0000673
so part of: AWJ20_4765
location: complement(<471658..>472089)
location: region:471658-472089:-1
so has part: feature:471658-472089:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:471658-472089:-1:exon

AWJ20_4765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CPR1
locus tag: AWJ20_4765
inference: similar to AA sequence:KEGG_Orthology:K01802
note: Cytoplasmic peptidyl-prolyl cis-trans isomerase (cyclophilin); catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; binds the drug cyclosporin A; N-terminally propionylated in vivo; protein abundance increases in response to DNA replication stress; GO_component: GO:0034967 - Set3 complex [Evidence IDA] [PMID 11711434]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000118 - histone deacetylase complex [Evidence IPI] [PMID 15643056]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15643056]; GO_function: GO:0016018 - cyclosporin A binding [Evidence IMP] [PMID 7515500]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0042277 - peptide binding [Evidence IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IDA] [PMID 2687115]; GO_process: GO:0030437 - ascospore formation [Evidence IMP] [PMID 15643056]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IMP] [PMID 11641409]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IMP] [PMID 12242280]; GO_process: GO:0016575 - histone deacetylation [Evidence IDA] [PMID 11711434]; GO_process: GO:0045836 - positive regulation of meiosis [Evidence IGI,IMP] [PMID 15643056]; GO_process: GO:0006457 - protein folding [Evidence IEA,IEA]; GO_process: GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA,IEA,IEA]; GO_process: GO:0015031 - protein …
codon start: 1
product: peptidylprolyl isomerase CPR1
translation: MLTVAQIVPKTAKNFRELATGSEGFGYAKSGFHRVIPEFMLQGGDFTNHNGTGGKSIYGAKFADENFQAKHTRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVEGYDVVKKIETFGSSSGATRAKLVIDASGTV
SIO_010081: AWJ20_4765
subclass of: SO_0000673
so part of: AWJ20_4765
location: complement(471658..472089)
location: region:471658-472089:-1
so has part: feature:471658-472089:-1:exon

XP_018736295.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:471658-472089:-1:exon

AWJ20_4766
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ENT3
locus tag: AWJ20_4766
so part of: sequence
location: <477114..>478451
location: region:477114-478451:1
so has part: feature:477114-478451:1:exon
subclass of: SO_0000010

30036933
type: Gene
SIO_000068: ncbigene

position:477114:1
position: 477114
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:478451:1
position: 478451
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:477114-478451:1:exon

AWJ20_4766
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ENT3
locus tag: AWJ20_4766
product: Ent3p
transcript id: XM_018881859.1
SIO_010081: AWJ20_4766
subclass of: SO_0000673
so part of: AWJ20_4766
location: <477114..>478451
location: region:477114-478451:1
so has part: feature:477114-478451:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:477114-478451:1:exon

AWJ20_4766
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ENT3
locus tag: AWJ20_4766
inference: similar to AA sequence:KEGG_Orthology:K12471
note: Protein containing an N-terminal epsin-like domain; involved in clathrin recruitment and traffic between the Golgi and endosomes; associates with the clathrin adaptor Gga2p; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0030479 - actin cortical patch [Evidence TAS] [PMID 10652251]; GO_component: GO:0030125 - clathrin vesicle coat [Evidence IDA] [PMID 12483220]; GO_component: GO:0030665 - clathrin-coated vesicle membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 12967568]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0030276 - clathrin binding [Evidence IDA] [PMID 12967568]; GO_function: GO:0008289 - lipid binding [Evidence IEA]; GO_function: GO:0080025 - phosphatidylinositol-3,5-bisphosphate binding [Evidence IDA] [PMID 14630930]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 14630930]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 12483220]; GO_process: GO:0006895 - Golgi to endosome transport [Evidence IMP] [PMID 12483220]; GO_process: GO:0000147 - actin cortical patch assembly [Evidence ISS] [PMID 10449404]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IMP] [PMID 12967568]; GO_process: GO:0007015 - actin filament organization [Evidence ISS] [PMID 10449404]; GO_process: GO:0034498 - early endosome to Golgi transport [Evidence IGI] [PMID 20658963]; GO_process: GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway [Evidence IMP] [PMID 15107463]; GO_process: GO:0071985 - multivesicular body sorting pathway [Evidence IMP] [PMID 12967568]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Ent3p
translation: MPMIYKRFTDKSAEEWRQIYKALQLLEFLVKNGSERVVDYARSHSAVIDMLKHFHFIDQNGKDQGINIRNRAKELTALLNDVERIRTERKKARSNKAKYSGIGNDIEGDEDFGGFGGTGKKYGGFGSDSMEFGGGYNANKVYGDGGGFNGSNYDGPGYSRGAGAGDDDEFEEYEVGGGYNDDSSGSAGSTSGSRNKGKTAASSSSRTKTTSSSSAAAPAPVADFISFDDDVAPPAATGASSSAAAEDDDDFDDFQSATPVAGASSNTKTTGGGSSTKADLLDLFSQPSTASSFQSQPLQQQQQFSSFTSSPGLPTQLSSTPSVVSPSAFSTTSTIGSNSTGFPGFSSTPSTPSIGAGSGLGNSSTGKPAAKKANDAFGDLWSSASKTKKSSAKTEPTSLAALAHENAQKSMWGGAPASSSSPSQPQPQSQQPSSSSGQIDDLLSF
SIO_010081: AWJ20_4766
subclass of: SO_0000673
so part of: AWJ20_4766
location: 477114..478451
location: region:477114-478451:1
so has part: feature:477114-478451:1:exon

XP_018736296.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:477114-478451:1:exon

AWJ20_4767
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: GIR2
locus tag: AWJ20_4767
so part of: sequence
location: complement(<478679..>479569)
location: region:478679-479569:-1
so has part: feature:478679-479569:-1:exon
subclass of: SO_0000010

30036934
type: Gene
SIO_000068: ncbigene

position:478679:-1
position: 478679
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:479569:-1
position: 479569
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:478679-479569:-1:exon

AWJ20_4767
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: GIR2
locus tag: AWJ20_4767
product: Gir2p
transcript id: XM_018881860.1
SIO_010081: AWJ20_4767
subclass of: SO_0000673
so part of: AWJ20_4767
location: complement(join(<478679..479334,479500..>479569))
location: region:478679-479569:-1
so has part: feature:479500-479569:-1:exon
so has part: feature:478679-479334:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:479500-479569:-1:exon

position:479500:-1
position: 479500
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:478679-479334:-1:exon

position:479334:-1
position: 479334
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

AWJ20_4767
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: GIR2
locus tag: AWJ20_4767
note: Highly-acidic RWD domain-containing hypothetical protein; cytoplasmic; forms a complex with Rbg2p; interacts with Rbg1p and Gcn1p; associates with translating ribosomes; putative intrinsically unstructured protein; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 19448108]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IGI] [PMID 21076151]
codon start: 1
product: Gir2p
translation: MDNKEEQEQEIDVLRSIYPDELEILSENKYNIHIKLDTTPTKFLILEVEYPDDYPQVVPVLDVDNSDGSYVNASGEDDEGYDGSDEEEYEDGIDETQGDSIEFTNADLVDLRKVLEENAEENIGLPSIFTLASLLKDQAEELVEKKIKIKEKQREKLIFEQEEKEQAKFRGTPVTPESFKAWRLKFRAELGLDNKEDANKPKHKLTGKEIFEKGLNKDEDEDDDTPAEPDQLASSVENLAV
SIO_010081: AWJ20_4767
subclass of: SO_0000673
so part of: AWJ20_4767
location: complement(join(478679..479334,479500..479569))
location: region:478679-479569:-1
so has part: feature:479500-479569:-1:exon
so has part: feature:478679-479334:-1:exon

XP_018736297.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:479500-479569:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:478679-479334:-1:exon

AWJ20_4768
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MIF2
locus tag: AWJ20_4768
so part of: sequence
location: <480189..>482804
location: region:480189-482804:1
so has part: feature:480189-482804:1:exon
subclass of: SO_0000010

30036935
type: Gene
SIO_000068: ncbigene

position:480189:1
position: 480189
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:482804:1
position: 482804
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:480189-482804:1:exon

AWJ20_4768
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MIF2
locus tag: AWJ20_4768
product: Muscle M-line assembly protein unc-89
transcript id: XM_018881861.1
SIO_010081: AWJ20_4768
subclass of: SO_0000673
so part of: AWJ20_4768
location: <480189..>482804
location: region:480189-482804:1
so has part: feature:480189-482804:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:480189-482804:1:exon

AWJ20_4768
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MIF2
locus tag: AWJ20_4768
codon start: 1
product: Muscle M-line assembly protein unc-89
translation: MIRLQVRIIPASQADNEVSSRVSRPSNFGPSSYHLQSSTPNASVKSFSNNDDDTYGFLHLVTPSELLKTVRDSIVNRFAKIYPEEGPLFIERLQDSSGLDLDPDYKVGDVFADRDDLFVILQEPVTRNDILQSNVSVADEPSLKRRAEDDSNSSIVLRPTKSRKRKSSIWMTPSNNAADISSLSHTPVPVLSSGTPASHLNVAPQLSESNGSPRVRRRPSLDLMAKPSAAEIPDSDVDEEAHEGNLSLPPPSNEAYANADPLKPVSPSANLNGSKNILNLESDKVQLLPPTPAKKSPIAGKKRAPQSELQLTPEITVKAAEQAEAVLEVASSQPSQDEASITQESDDKIETGLQPIAGTPTGSQPKAKRQRAKATEKKIQDTLINATETKGVEVSPISGLTRKEQAQEAKRLREEAKKLKQLEAQKKKEEQLKKKELQAQRKRELEAQKSAKAAELRELQRKKALEELEKLGEENRRKREEERLKQQEQQQREQKDETNPSQDDIIETENSDDGAKGKKRPSAETLRRNQQRLEANRKSMEKFHNAVNSLEKDADGSAAVPEASVEPPTQSEEPPKRKRGRPPKKKVEVQPETVKPVSPVKPDVVPTAAKINGSQGSTNDKQENKQEEPNDNEEDDDEQEEGQKIKPVTNQRSQGNTAARYAQRLLRDDSNSDSSSADELSDGDSDLSDSPAPVKRPRIVPTPSSAKLVTANGNGRATGSQSQASPAPNPVRTTMPQPHPSAVRTSSATPSSPNPAPQTRLTGLNLLSSLASQAIPDVRERVTGVLPVAPKVNSKPSQPKEDTDSDSNSDSDSDSDSDSNSDSDAESDGEETNGIPLSKMASKTKQPKKKKRNTGFMGLMKDAFAGSVKSR
SIO_010081: AWJ20_4768
subclass of: SO_0000673
so part of: AWJ20_4768
location: 480189..482804
location: region:480189-482804:1
so has part: feature:480189-482804:1:exon

XP_018736298.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:480189-482804:1:exon

AWJ20_4769
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MCM4
locus tag: AWJ20_4769
so part of: sequence
location: <483229..>485949
location: region:483229-485949:1
so has part: feature:483229-485949:1:exon
subclass of: SO_0000010

30036936
type: Gene
SIO_000068: ncbigene

position:483229:1
position: 483229
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:485949:1
position: 485949
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:483229-485949:1:exon

AWJ20_4769
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MCM4
locus tag: AWJ20_4769
product: MCM DNA helicase complex subunit MCM4
transcript id: XM_018881862.1
SIO_010081: AWJ20_4769
subclass of: SO_0000673
so part of: AWJ20_4769
location: <483229..>485949
location: region:483229-485949:1
so has part: feature:483229-485949:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:483229-485949:1:exon

AWJ20_4769
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MCM4
locus tag: AWJ20_4769
inference: similar to AA sequence:KEGG_Orthology:K02212
note: Essential helicase component of heterohexameric MCM2-7 complexes; MCM2-7 complexes bind pre-replication complexes on DNA and melt DNA prior to replication; forms an Mcm4p-6p-7p subcomplex; shows nuclear accumulation in G1; homolog of S. pombe Cdc21p; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IDA] [PMID 9554851]; GO_component: GO:0042555 - MCM complex [Evidence IEA]; GO_component: GO:0042555 - MCM complex [Evidence IDA] [PMID 12480933]; GO_component: GO:0097373 - MCM core complex [Evidence IDA] [PMID 13679365]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10559985]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10704410]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 16824194]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 9335335]; GO_component: GO:0043596 - nuclear replication fork [Evidence IDA] [PMID 16103218]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10559985]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10704410]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0043140 - ATP-dependent 3'-5' DNA helicase activity [Evidence IDA] [PMID 13679365]; GO_function: GO:0004003 - ATP-dependent DNA helicase activity [Evidence IDA] [PMID 15723534]; GO_function: GO:1990163 - ATP-dependent four-way junction helicase activity [Evidence IDA] [PMID 13679365]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003678 - DNA helicase activity [Evidence IEA]; GO_function: GO:0003678 - DNA helicase activity [Evidence IDA] [PMID 18657510]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 11756674]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 16824194]; GO_function: GO:0004386 …
codon start: 1
product: MCM DNA helicase complex subunit MCM4
translation: MASSPPAPGDSSPLFFNSVTSSSPIRARASQDDGALSERAGRLRIEDVSSPLGYPSSERDHTLYSASRNGRSSHFSETDNISADNHHRSYNRRGDIFSSDLTPSRRMLVSSDGHAPSDSGLFTLSARGSDVSETGNPGDPVRLIWGTNVSIAETMNSFRSFLQSFKSKYRMMHDDIPIGPGEGEDLVYVNMMNQMRILGSANLNLDAQNLLAYPATHKLYYQLINYPYELVPIMDQVIKDCMVTLVTTTTNGGTVDAKELEATEMRNYKVRPFGIDNKRGMRDLNPGDIDKLVTVKGLVLRATPVIPDMKEAFFKCIVCSHTVVVEIDRGTITEPTKCPRPVCGRTNSMQIVHNRCLFADKQVIRLQETPDITPDGQTPHSISLCVYDELVDICKAGDRVEVTGIFRSVPVRINPRQRTLKSLFKTYVDILHVQKVDKKRMGIDVTTNLEAEVAEQQQADVEETRKITEDDIAKIKEVAARDDLYDLLARSLAPSIYEQDDVKKGILLQLFGGSNKTFEKGGSPRYRGDINILLCGDPSTSKSQMLQYVHKIAPRGIYTSGKGSSAVGLTAYVTRDIETKQLVLESGALVLSDGGICCIDEFDKMSDATRSVLHEVMEQQTISIAKAGIITTLNARTSILASANPIGSKYDVKLSVPQNIDLPPSLLSRFDLVYLMIDKIDAQADRHLANHLTRMYAEDVPENAATSEILPVEFLTLYISYAKNLQPQITPEAKDELVKAYVAMRKLGEDSRTAEKRITATTRQLESMIRLSEAHAKMRLSEVVTADDVLEAVRLIRSAIKEYAMDPITGTIDMDLVQTGTSSAQRRLRVDLKENLLSIMDTAIARTGSGGTLRYDELVRLVADIIPTRVENLELGNALRSLEQEGKIVMTGSNTRRTIRRVTGLV
SIO_010081: AWJ20_4769
subclass of: SO_0000673
so part of: AWJ20_4769
location: 483229..485949
location: region:483229-485949:1
so has part: feature:483229-485949:1:exon

XP_018736299.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:483229-485949:1:exon

AWJ20_4770
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SLS1
locus tag: AWJ20_4770
so part of: sequence
location: complement(<486060..>488579)
location: region:486060-488579:-1
so has part: feature:486060-488579:-1:exon
subclass of: SO_0000010

30036938
type: Gene
SIO_000068: ncbigene

position:486060:-1
position: 486060
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:488579:-1
position: 488579
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:486060-488579:-1:exon

AWJ20_4770
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SLS1
locus tag: AWJ20_4770
product: Sls1p
transcript id: XM_018881864.1
SIO_010081: AWJ20_4770
subclass of: SO_0000673
so part of: AWJ20_4770
location: complement(<486060..>488579)
location: region:486060-488579:-1
so has part: feature:486060-488579:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:486060-488579:-1:exon

AWJ20_4770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SLS1
locus tag: AWJ20_4770
note: Mitochondrial membrane protein; coordinates expression of mitochondrially-encoded genes; may facilitate delivery of mRNA to membrane-bound translation machinery; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 8917313]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 8917313]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 12637560]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 15692048]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 8917313]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 12637560]; GO_process: GO:0006412 - translation [Evidence IEA]
codon start: 1
product: Sls1p
translation: MLSFGGRAGRAICLLPKRGSVGVLSKAGNIINSCTTYGYGIRWNSGPGSDNLGDTKNELLSSKEGMKGIAVDDISSLKKSPLLNQKDSTPAAAADTAGSSSTTIDSAAGSNTSTVDSQSETKFSGSETTENVTGNSHSLAASKTRGKKLPPPPQEYIILGARSSRVIPKHRRPKTNFSRDIKVDDLDEQRKQLLVFTSSVPIGTAIANIDRMKPSASLLSPKRYDQLVIDLKRSFAVPQLREYIREKSNSTLRSSGTKAQLINTILLSLWRVSASQSVSESSDVIIERTFQLTRRELFIIVSQNSKLPRSWTKSGASIVILGDEQKIIVRATADTCNWIMASLHKTLQSIQDNDIDFSCLEPFASINDIPLDQIQRLSDTYLRYQQSEKMLVASSKSKDHAEHARRLILHSSGFTPKSISNYIYEDSNFTPRSLSRIIDDDALAWNERSRIWKRWKKVRSKQPFSSFERLRNLGSQPKNIVLAQGKINKVAPQPSTLKDSYEDSVSNILLKNLEQEDSNNQLTFTATFGYLLHEAPSESNAKSAADPSYLAGDVQRTFLSNVPFVFQRCSELSLYHNEIYHDPSKPPPPPKPSPDSGSTTATSSAWNKLLSNAKLLTDSVPSTEDDSLVPVEGTRGLLDDDNMRLVQIKFIPSPFHLKDSDKLQKLPPVEMWFELKENSDECDLDSLRLVSADHEANSYLSLPDYETDIKFSATSANFLDHNEQEGVNQFLSRAQLGISGNKKIYVPNELKLKMPGFEDDVTYLYQSMCYRRQIDLGFKGHILQLSSLESGGFGGRRIEANLVLDFPDGSESVSKSEVKSFVNDALEFCESLRRRSIHL
SIO_010081: AWJ20_4770
subclass of: SO_0000673
so part of: AWJ20_4770
location: complement(486060..488579)
location: region:486060-488579:-1
so has part: feature:486060-488579:-1:exon

XP_018736300.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:486060-488579:-1:exon

AWJ20_4771
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: rrn5
locus tag: AWJ20_4771
so part of: sequence
location: <488843..>490696
location: region:488843-490696:1
so has part: feature:488843-490696:1:exon
subclass of: SO_0000010

30036939
type: Gene
SIO_000068: ncbigene

position:488843:1
position: 488843
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:490696:1
position: 490696
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:488843-490696:1:exon

AWJ20_4771
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: rrn5
locus tag: AWJ20_4771
product: RNA polymerase I upstream activation factor complex subunit Rrn5
transcript id: XM_018881865.1
SIO_010081: AWJ20_4771
subclass of: SO_0000673
so part of: AWJ20_4771
location: <488843..>490696
location: region:488843-490696:1
so has part: feature:488843-490696:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:488843-490696:1:exon

AWJ20_4771
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: rrn5
locus tag: AWJ20_4771
codon start: 1
product: RNA polymerase I upstream activation factor complex subunit Rrn5
translation: MPPKRKSLPDISNEGPSQKKLFLQADYRIKYGKPQLEKYVAQFNKEVVEFLTGIDTSDSGEQVDFVSEKDNDAGTEEPLVDDVSERTEPAINGSEAVTSKSEVVTNILEVDSDSEHSTNGVLNRVDECSSSEDSIGIDETDLEPSEDDYRCGTIWSEEEKERFFTALGRKSCHDMAAISRAVGTKTLIECEAYYNLLKSCYEYLKRRKPLLSKTLQREIFVSYEDLPYSYEMTESWDSVENKYANAVIDAIADMEVEKQNQQQETTNDQNGTTEHTNSEPLLLKLDTDTSSQHPIDTTLINGSSHEHPNTGTLQGVGSEISVSNVASSDYKVSATRTATTVATNVVPRKTLFAKRSGMCAKASSQLLNIPEAVKFANMFFRQSQKNLGHMYHHGGRGQKKSHFYLEDISQEAVDYLENIIKSQTRLILGRYIWSAEDYDPSDEEHRNKAFYENLVHAMGYITRVNKHLQERYPRATFWKAISDFNGVEIDTYNTPPLQKNPADEYRFHFGVEPKHQNRFPFGLKQQFQPYEHLAYSQPTIDVEDSYSPQQRRFFQQVLEAAQEVAQRRPEDSTSPSDIVKSSNTDDDIDRYLDLVEIDISRHEEKRLLVWFNGAEAT
SIO_010081: AWJ20_4771
subclass of: SO_0000673
so part of: AWJ20_4771
location: 488843..490696
location: region:488843-490696:1
so has part: feature:488843-490696:1:exon

XP_018736301.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:488843-490696:1:exon

AWJ20_4772
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CRH1
locus tag: AWJ20_4772
so part of: sequence
location: <492519..>494135
location: region:492519-494135:1
so has part: feature:492519-494135:1:exon
subclass of: SO_0000010

30036940
type: Gene
SIO_000068: ncbigene

position:492519:1
position: 492519
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:494135:1
position: 494135
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:492519-494135:1:exon

AWJ20_4772
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CRH1
locus tag: AWJ20_4772
product: Crh1p
transcript id: XM_018881866.1
SIO_010081: AWJ20_4772
subclass of: SO_0000673
so part of: AWJ20_4772
location: <492519..>494135
location: region:492519-494135:1
so has part: feature:492519-494135:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:492519-494135:1:exon

AWJ20_4772
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CRH1
locus tag: AWJ20_4772
note: Chitin transglycosylase; functions in the transfer of chitin to beta(1-6) and beta(1-3) glucans in the cell wall; similar and functionally redundant to Utr2; localizes to sites of polarized growth; expression induced by cell wall stress; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 10757808]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 15781460]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 10757808]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA,IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IGI,IMP] [PMID 18694928]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IDA] [PMID 23919454]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0006037 - cell wall chitin metabolic process [Evidence IGI,IMP] [PMID 18694928]; GO_process: GO:0071555 - cell wall organization [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI,IMP] [PMID 18694928]; GO_process: GO:0008152 - metabolic process [Evidence IEA]
codon start: 1
product: Crh1p
translation: MVGKHSFLSAVAIALISPTVNAQTFTTCNPLSSNDCPADPALGGPLFVDFTQGSSNDFSPLTAASKISYNDLGVGFTVAQQGDNPTLASNGYIMFGRIEVVLQAAPGQGMVSSVILQSDDLDEIDMEWIGGDNTQFQSNYFSKGQTTTFDRGEFHSVNDPVGSFHNYTVDWTADQTTWYLDGAPVRVLESNAPEGYPQTPMKLRMGSWAGGDPSNPPGTIEWAGGPTNYAAGPFTFYVKSVYYVDYSTGSEYVYGDESGSWQSIKAIGGSVIGSPVSPPAVNALAAVASSADPPSSLPPVASSTPAMSSSASPPPPPPPSPTPSSSAIPSSSIESSPTIFSSSVATSTLSSSSSIFSSSSPPPPPSTSTPSSSSLFTSSSLPPPPPPSTTSTTSTPSSSSAPPSSSSTTSSTTSSIESSSSSSVEPSTTSSSSTPPPPPPPPTTTSAIRSSSLTSTSSTTSSTTSSTTSTTTSSTISTTSTTSINTTTSLPPPPSTSSSTSASTTPSIVPPSEGAASLSSIPSFVSLTIVIISVILHV
SIO_010081: AWJ20_4772
subclass of: SO_0000673
so part of: AWJ20_4772
location: 492519..494135
location: region:492519-494135:1
so has part: feature:492519-494135:1:exon

XP_018736302.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:492519-494135:1:exon

AWJ20_4773
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4773
so part of: sequence
location: complement(<494344..>495246)
location: region:494344-495246:-1
so has part: feature:494344-495246:-1:exon
subclass of: SO_0000010

30036941
type: Gene
SIO_000068: ncbigene

position:494344:-1
position: 494344
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:495246:-1
position: 495246
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:494344-495246:-1:exon

AWJ20_4773
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4773
product: hypothetical protein
transcript id: XM_018881867.1
SIO_010081: AWJ20_4773
subclass of: SO_0000673
so part of: AWJ20_4773
location: complement(<494344..>495246)
location: region:494344-495246:-1
so has part: feature:494344-495246:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:494344-495246:-1:exon

AWJ20_4773
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4773
codon start: 1
product: hypothetical protein
translation: MNDRPPESPSGIKVGEDGARYVGGSVRSDGSVRKTVKIRPGFVPAEDVPKYVIRARRTEGPGNASSGGPGGASRPQFRPSAAFGLITKTLQDNRTADKRDNARSGPDQTDDLADALSKVSIADKTSRDEKRVEGSDSDTAKKNGLKERSGASRPDDTVSKTRSEFTKHLKSKTESSQLASEEEPIGLKSKSMRHPIRNSRSKDKKLNPTTSQKPSEKEQKDSSKSIESSEKSNDRESKASLSPETTEKEQNRSSKSIEPTGRTIPTSKDAERSSPASTTSEKGGSRAYVPPWKRNNDKRA
SIO_010081: AWJ20_4773
subclass of: SO_0000673
so part of: AWJ20_4773
location: complement(494344..495246)
location: region:494344-495246:-1
so has part: feature:494344-495246:-1:exon

XP_018736303.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:494344-495246:-1:exon

AWJ20_4774
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ASH1
locus tag: AWJ20_4774
so part of: sequence
location: complement(<496087..>497916)
location: region:496087-497916:-1
so has part: feature:496087-497916:-1:exon
subclass of: SO_0000010

30036942
type: Gene
SIO_000068: ncbigene

position:496087:-1
position: 496087
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:497916:-1
position: 497916
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:496087-497916:-1:exon

AWJ20_4774
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ASH1
locus tag: AWJ20_4774
product: DNA-binding transcription repressor ASH1
transcript id: XM_018881868.1
SIO_010081: AWJ20_4774
subclass of: SO_0000673
so part of: AWJ20_4774
location: complement(<496087..>497916)
location: region:496087-497916:-1
so has part: feature:496087-497916:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:496087-497916:-1:exon

AWJ20_4774
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ASH1
locus tag: AWJ20_4774
codon start: 1
product: DNA-binding transcription repressor ASH1
translation: MVSSLVLPAPRSSDLLMRDRSPEIMSLRGGAINTTSPRSSGLVPVSSVGNNSNNGSGSVSGSGTSSGLARTVPDSDLNQRDYDSIPNDNEVVNGADSSTGAGAATIGYDTNVNSVSAASTPSSTSVFTSQSSSSTTASTPIPFFPSTGQSDQSSKSTGHESTHNEYFSSATDAPLPGSNSTLHTDSLPTNLQPEESSSPVVSIELPKTSSSSDGSIDEETLSVSSITDTPSTSLGVAQKDSKSYSHVASPLTPTSLAHLSPPTVSLLYPDTAPRETWRPQLDAWMKKNHPLKLKELSQISYPWIHDKLPSTAPINFPSRPHSHTSTSSSSSSHRDTTSTSTSSSSSHSVPPSSRSQETSPPYPPATLSTTSIYGKAGLSKVSSSNSILPLYASSASHDRTSTASSMSPTTQYLSPSLSIPSSSASSTSSGSLSMSVPTVSSSSYHRPQKAARRASYSATSHTKPYSRPNHSTIGGPTGLSQEDDDRDDHAHIHNPRLPSPPESPQLSANSNSQLTLEQYTNSIKRRCISCGSDQSPCWRPSWSASAGQLCNSCGLRYKKTGARCLSAKCGRIPAKGEWAAMKSVAVRVGGQLHYSCLWCGDEVEVMPRG
SIO_010081: AWJ20_4774
subclass of: SO_0000673
so part of: AWJ20_4774
location: complement(496087..497916)
location: region:496087-497916:-1
so has part: feature:496087-497916:-1:exon

XP_018736304.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:496087-497916:-1:exon

AWJ20_4775
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4775
so part of: sequence
location: <501045..>501920
location: region:501045-501920:1
so has part: feature:501045-501920:1:exon
subclass of: SO_0000010

30036943
type: Gene
SIO_000068: ncbigene

position:501045:1
position: 501045
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:501920:1
position: 501920
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:501045-501920:1:exon

AWJ20_4775
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4775
product: hypothetical protein
transcript id: XM_018881869.1
SIO_010081: AWJ20_4775
subclass of: SO_0000673
so part of: AWJ20_4775
location: <501045..>501920
location: region:501045-501920:1
so has part: feature:501045-501920:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:501045-501920:1:exon

AWJ20_4775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4775
codon start: 1
product: hypothetical protein
translation: MSSSSSRKHLVGVKVLQLSRPVLSRAEILKETPSTLVELPSSFNVYVGEKFSCLVSVYSESTQPVHVNLSVFVVTPSHKETVLVHSDQPEVSEFTLEPGKSTQLTVHYEPKSSGSHSLTTAISYRPKVYESAEDLSDEGSGSPSTQQTPGKTNSSTPTGTSGTQADQNPITNPIVKFHKRNEFLATQALEVRGKVTFIDGNQSAYTFEAEIENVSHNTMILETVDLLPGTGWLATASPNTPDTPLHPKDVWQMAYIVTTDPDATTVTSARPDKFMLGWRREPLGERGWLAL
SIO_010081: AWJ20_4775
subclass of: SO_0000673
so part of: AWJ20_4775
location: 501045..501920
location: region:501045-501920:1
so has part: feature:501045-501920:1:exon

XP_018736305.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:501045-501920:1:exon

AWJ20_4776
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SGN1
locus tag: AWJ20_4776
so part of: sequence
location: complement(<502142..>502729)
location: region:502142-502729:-1
so has part: feature:502142-502729:-1:exon
subclass of: SO_0000010

30036944
type: Gene
SIO_000068: ncbigene

position:502142:-1
position: 502142
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:502729:-1
position: 502729
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:502142-502729:-1:exon

AWJ20_4776
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SGN1
locus tag: AWJ20_4776
product: Sgn1p
transcript id: XM_018881870.1
SIO_010081: AWJ20_4776
subclass of: SO_0000673
so part of: AWJ20_4776
location: complement(<502142..>502729)
location: region:502142-502729:-1
so has part: feature:502142-502729:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:502142-502729:-1:exon

AWJ20_4776
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SGN1
locus tag: AWJ20_4776
inference: similar to AA sequence:KEGG_Orthology:K14396
note: Cytoplasmic RNA-binding protein; contains an RNA recognition motif (RRM); may have a role in mRNA translation, as suggested by genetic interactions with genes encoding proteins involved in translational initiation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10764794]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008143 - poly(A) binding [Evidence IDA] [PMID 10764794]; GO_process: GO:0016071 - mRNA metabolic process [Evidence IGI] [PMID 10764794]
codon start: 1
product: Sgn1p
translation: MSENNQATEAVTSQEPQDVEINHDEAQEHSEQAPSGDGEQTVDAMKTRLKELEAEAERLQAMQSELQKEGADLTEDKADVDSRSVYVGNVDFGSTPEELQQHFQSCGTINRVTILIDKFTGQPKGYAYVEFAEPSLVSQALLLNESIFRGRPLKVTPKRTNIPGMSARGRGRGGRGGRGYRGGFRGRGRGGYRPY
SIO_010081: AWJ20_4776
subclass of: SO_0000673
so part of: AWJ20_4776
location: complement(502142..502729)
location: region:502142-502729:-1
so has part: feature:502142-502729:-1:exon

XP_018736306.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:502142-502729:-1:exon

AWJ20_4777
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4777
so part of: sequence
location: <505064..>505726
location: region:505064-505726:1
so has part: feature:505064-505726:1:exon
subclass of: SO_0000010

30036945
type: Gene
SIO_000068: ncbigene

position:505064:1
position: 505064
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:505726:1
position: 505726
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:505064-505726:1:exon

AWJ20_4777
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4777
product: hypothetical protein
transcript id: XM_018881871.1
SIO_010081: AWJ20_4777
subclass of: SO_0000673
so part of: AWJ20_4777
location: <505064..>505726
location: region:505064-505726:1
so has part: feature:505064-505726:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:505064-505726:1:exon

AWJ20_4777
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4777
codon start: 1
product: hypothetical protein
translation: MRGKYVHEIVSHKVIPARAYDYVQLVSKIYPAIAQDPKNGVHLVGSWRTVIGDQDTYTHIWEYNGFEGFHRTQNVIHEDPKYLQYLGELRECLRSRESSIMQEFSFWGGTAAPRELGGIFELRSYDLKAGCLLEWETHWKKGIECRRQVMEPVGAWFSQIGSLNRVHHLWQFADLEHRKLSRARSWEIPGWAETVSAMIFICVSFCNTNYSFRLTRPLNS
SIO_010081: AWJ20_4777
subclass of: SO_0000673
so part of: AWJ20_4777
location: 505064..505726
location: region:505064-505726:1
so has part: feature:505064-505726:1:exon

XP_018736307.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:505064-505726:1:exon

AWJ20_4778
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RSM22
locus tag: AWJ20_4778
so part of: sequence
location: complement(<506179..>508368)
location: region:506179-508368:-1
so has part: feature:506179-508368:-1:exon
subclass of: SO_0000010

30036946
type: Gene
SIO_000068: ncbigene

position:506179:-1
position: 506179
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:508368:-1
position: 508368
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:506179-508368:-1:exon

AWJ20_4778
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RSM22
locus tag: AWJ20_4778
product: mitochondrial 37S ribosomal protein RSM22
transcript id: XM_018881872.1
SIO_010081: AWJ20_4778
subclass of: SO_0000673
so part of: AWJ20_4778
location: complement(<506179..>508368)
location: region:506179-508368:-1
so has part: feature:506179-508368:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:506179-508368:-1:exon

AWJ20_4778
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RSM22
locus tag: AWJ20_4778
note: Mitochondrial ribosomal protein of the small subunit; also predicted to be an S-adenosylmethionine-dependent methyltransferase; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence ISM] [PMID 19351663]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]; GO_process: GO:0006412 - translation [Evidence IEA]
codon start: 1
product: mitochondrial 37S ribosomal protein RSM22
translation: MFSIQRRLVQRARLSSPQLVRYRSSAPSARGTGRLSGVKAIPYAEIVNEHSDLQDNVEVLNLEELINASNEPNFAEENRSARTERLDIDTRQGKTAGNKLLVLPEEITSVISNATRGYTPNRLRSNASKYYLSLAESGAHRPATETIDVDTHLTGVFLQNYASLYNVLKEARQRLGEKWRPNRILDVGFGPATGMIALNEVFSDVDAEDWQPERKLAIVIGHRDMKKRAVSVLATQKHEESEEQGQLFEENEEALTEEEQQELEEILAVETKGLEETQQEELDVNTEETDSVNEIEFEEIPKTKQKAHIKTVVRQQLPAAKSSSKYDLIIATHQLYRSGYHYPASVDDHTSHLLSLLSPGGILVLVERGDPTGFESIARARQIMFRPEDHQSPEKYPPRLWKNDEQFPLSIVAPCSHHGKCPLQVELGIRNKGKNPAYFGWCKFAQMVQRPKFALELKKGQLLSQKWSLVNTASGKVSGEGGKSLAGSGRAFGRSFETATHSYLIVERKAKEQKGTNEQSQELELKDDSISDPASWPRILQNPLKRDKHVVMEVCAPSGQVEQWTVTQKFGKQAYHDARKATGGDLWALGAKVKQVRGGNLSKLRKASAKIQSESRRATKENLQAEIKIDEKVAAEIQEENVDSESESKAPDAIDIAWLRNDSFNSQKMKRKQAYTRGSEPGAYEDIDGGFSSEYFDDLAQVFENKKAKDYAKKLEKSSHVEKKRVMKW
SIO_010081: AWJ20_4778
subclass of: SO_0000673
so part of: AWJ20_4778
location: complement(506179..508368)
location: region:506179-508368:-1
so has part: feature:506179-508368:-1:exon

XP_018736308.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:506179-508368:-1:exon

AWJ20_4779
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: FSH3
locus tag: AWJ20_4779
so part of: sequence
location: <508852..>509604
location: region:508852-509604:1
so has part: feature:508852-509604:1:exon
subclass of: SO_0000010

30036947
type: Gene
SIO_000068: ncbigene

position:508852:1
position: 508852
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:509604:1
position: 509604
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:508852-509604:1:exon

AWJ20_4779
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: FSH3
locus tag: AWJ20_4779
product: Fsh3p
transcript id: XM_018881873.1
SIO_010081: AWJ20_4779
subclass of: SO_0000673
so part of: AWJ20_4779
location: <508852..>509604
location: region:508852-509604:1
so has part: feature:508852-509604:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:508852-509604:1:exon

AWJ20_4779
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: FSH3
locus tag: AWJ20_4779
note: Putative serine hydrolase; likely target of Cyc8p-Tup1p-Rfx1p transcriptional regulation; sequence is similar to S. cerevisiae Fsh1p and Fsh2p and the human candidate tumor suppressor OVCA2; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]
codon start: 1
product: Fsh3p
translation: MSQKILCLHGFTQNGPLFARKVSAVRKTLQKAGFETVFLTAPVKLEIADLPFEPTNVASLGGSDDSMRSWWPNSDSNPNHYKLDQAFEAIKQSIIEDGPYVGVLGFSQGAALAGVLCQHIHKLHETQPVLKFGIFYSGFRIMRPEHQHFYNELISVPTLHILGSLDTVVSEERSMALYNSCSDNTRTLLHHPGGHFVPNSKDFVTRVVEMVVSSTSSSPPATEPDVVNEKISETSQPSDDWSAFDTIGRA
SIO_010081: AWJ20_4779
subclass of: SO_0000673
so part of: AWJ20_4779
location: 508852..509604
location: region:508852-509604:1
so has part: feature:508852-509604:1:exon

XP_018736309.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:508852-509604:1:exon

AWJ20_4780
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: KEL1
locus tag: AWJ20_4780
so part of: sequence
location: complement(<511059..>514622)
location: region:511059-514622:-1
so has part: feature:511059-514622:-1:exon
subclass of: SO_0000010

30036949
type: Gene
SIO_000068: ncbigene

position:511059:-1
position: 511059
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:514622:-1
position: 514622
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:511059-514622:-1:exon

AWJ20_4780
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: KEL1
locus tag: AWJ20_4780
product: Kel1p
transcript id: XM_018881875.1
SIO_010081: AWJ20_4780
subclass of: SO_0000673
so part of: AWJ20_4780
location: complement(<511059..>514622)
location: region:511059-514622:-1
so has part: feature:511059-514622:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:511059-514622:-1:exon

AWJ20_4780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: KEL1
locus tag: AWJ20_4780
note: Protein required for proper cell fusion and cell morphology; functions in a complex with Kel2p to negatively regulate mitotic exit, interacts with Tem1p and Lte1p; localizes to regions of polarized growth; potential Cdc28p substrate; KEL1 has a paralog, KEL2, that arose from the whole genome duplication; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 23673619]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 9786949]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 9786949]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 9786949]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000755 - cytogamy [Evidence IGI,IMP,IPI] [PMID 9786949]; GO_process: GO:0001100 - negative regulation of exit from mitosis [Evidence IMP,IPI] [PMID 12234925]; GO_process: GO:0008360 - regulation of cell shape [Evidence IMP] [PMID 9786949]
codon start: 1
product: Kel1p
translation: MSYDLTTLRSENAQWTLVQPEGGISPPPRTNHTVVSYQDKLYLFGGTDGKLWYSDTWCYDPSINTWTSLDCSGFIPAPCEGHAATIVGDIMYVFGGRSSQGKDLGTLSALKLTTKKWFTFQNLGPGPSPRSGHSMTAFAGNKILVMGGECPELHENDNDVNYDNYEVNSKLSMVFVLDTLRINYPVDSDVPQNSAVSDLSGKRSVNDSRTPSAASGNYRTATGDSSTPPSTFSTASTSSVPPPHGVPVNSGTGIAGAGAGAVAAAAAMGAGVTGFPHPESSQHEANTESSPRGVARDEYTREAVSPYQEYPSGAKSNGSGSGNRNANGNGNGGYGSYNAGNNGVASQDVQRSPYDDGSDGVSNTTFESADEEKFKTSPSHDQVANIPGAWQQASSPSSTSSRDSESYREPIKLPKLRTSPRVDTSAKGLAGIAGLAGIAAGTAGAGATAGLGSGSGADADFSQSTRDYTEENATTPTVSNMSQDRSVDSFTDQHPVDQSTPRGSQVNLAEPANANNVNQVIEQLKASNSWYETELAAAKEAGYVSKSNPPVDVLKLRRVSQRLTQDNQESLSEREILITALSDLKGELRTVQGDIQRQAAAASDRISAVEKERDAALAELKSLKESSQPVGVPEQHQREIDDHKATIASLQNELETTRASRGLLLGNADSLSALDDLKMSNAQLEQQLRNQADRLVIAEHEAAQFKSKHEDLQAQHKELTSSAAEKVAALAAAGAAITASQSKFKELSKQLDEHKSARSDLEAKNLDLERQLSDHKLQLEASQRELNDHRNLLQAAEEQNEHSSKALGDGIDKIVSMWSGSKYFAVAGVGAGLGAAAGAAAANGTASRGLDEDDEEDPRISHLQSQLEMANKLHVSHKEAAEKATDDLTVALTQVSGLKKELAESEAARKQAEDKLALLEEELKSTSGDLQSHRELLDNHKKSLSELTEKHDALTTQLSSQSEAHTTQAKELDAKLEKALKEHQETAEQRYQELEQQYKETLQYVRNSDKALNKTRDELNKHKDLNSKLQEEINELKLRSQQDDDEADTTTGERSINSIGSNYNNKHFDLQLRDLKAQIIILQEERDELRASSLELKKKAINNAHDIEEAKTEKSRLAQENAKLQQRAREAEEKLSVLLHDKRSSRDPIIDPESGQTLDSFSDNLEKIRTERERLSGLLRESPGADE
SIO_010081: AWJ20_4780
subclass of: SO_0000673
so part of: AWJ20_4780
location: complement(511059..514622)
location: region:511059-514622:-1
so has part: feature:511059-514622:-1:exon

XP_018736310.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:511059-514622:-1:exon

AWJ20_4781
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4781
so part of: sequence
location: complement(<514937..>515938)
location: region:514937-515938:-1
so has part: feature:514937-515938:-1:exon
subclass of: SO_0000010

30036950
type: Gene
SIO_000068: ncbigene

position:514937:-1
position: 514937
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:515938:-1
position: 515938
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:514937-515938:-1:exon

AWJ20_4781
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4781
product: hypothetical protein
transcript id: XM_018881876.1
SIO_010081: AWJ20_4781
subclass of: SO_0000673
so part of: AWJ20_4781
location: complement(<514937..>515938)
location: region:514937-515938:-1
so has part: feature:514937-515938:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:514937-515938:-1:exon

AWJ20_4781
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4781
codon start: 1
product: hypothetical protein
translation: MAIFSKNKKNKKDGARNSVVPKAFEGAKDALVGGAGGEEGSSPTQRQVSGASTVSSTNSMISGNGSQSPHNGHGAGNVPNIANTISNLYSGPGSSGPYPGRSPGSGSGGPNGASPQNRNYPQSGSRSNSAMSGHGPNGSSGGVRSPPGSRNATSPMGQQYPGGQQQWGGQQQWQQSPQQQQLHHQQSVPSNLRSQSSPHPSSQPQYPWSRHTISNSSPFPRHGHAANAVAARDGEVFVMGGLKGSNVFGDLWVIESGKSVGGQDASGGRALPGPVCARFASPKGTGCLRRPGAARTRCAPLRGAVKGSLGLAKRAQTGPGSARPPEAAKAPEI
SIO_010081: AWJ20_4781
subclass of: SO_0000673
so part of: AWJ20_4781
location: complement(514937..515938)
location: region:514937-515938:-1
so has part: feature:514937-515938:-1:exon

XP_018736311.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:514937-515938:-1:exon

AWJ20_4782
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SFP1
locus tag: AWJ20_4782
so part of: sequence
location: complement(<521591..>522196)
location: region:521591-522196:-1
so has part: feature:521591-522196:-1:exon
subclass of: SO_0000010

30036951
type: Gene
SIO_000068: ncbigene

position:521591:-1
position: 521591
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:522196:-1
position: 522196
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:521591-522196:-1:exon

AWJ20_4782
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SFP1
locus tag: AWJ20_4782
product: zinc-coordinating transcription factor SFP1
transcript id: XM_018881877.1
SIO_010081: AWJ20_4782
subclass of: SO_0000673
so part of: AWJ20_4782
location: complement(<521591..>522196)
location: region:521591-522196:-1
so has part: feature:521591-522196:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:521591-522196:-1:exon

AWJ20_4782
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SFP1
locus tag: AWJ20_4782
inference: similar to AA sequence:KEGG_Orthology:K19487
codon start: 1
product: zinc-coordinating transcription factor SFP1
translation: MPPVPVSMSPINSTSYLPNLEADFCKDYSCCGQILPTLHDLLRHYEEAHISPSPPVEPPVMRRMQSLEAVSTNEVFLSPVSSATATPMMMDEDDEMCIDDPARHLYVMERGEHKPFKCPVIGCEKTYKNQNGLKYHRMHGHQNQTLHLNEDGTYSIIDPTSNTPYPEGMGMEKDKPYRCEVCGKRYKNLNGLKYHRGHSTH
SIO_010081: AWJ20_4782
subclass of: SO_0000673
so part of: AWJ20_4782
location: complement(521591..522196)
location: region:521591-522196:-1
so has part: feature:521591-522196:-1:exon

XP_018736312.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:521591-522196:-1:exon

AWJ20_4783
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ADP1
locus tag: AWJ20_4783
so part of: sequence
location: complement(<529692..>532442)
location: region:529692-532442:-1
so has part: feature:529692-532442:-1:exon
subclass of: SO_0000010

30036952
type: Gene
SIO_000068: ncbigene

position:529692:-1
position: 529692
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:532442:-1
position: 532442
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:529692-532442:-1:exon

AWJ20_4783
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ADP1
locus tag: AWJ20_4783
product: putative ATP-dependent permease ADP1
transcript id: XM_018881878.1
SIO_010081: AWJ20_4783
subclass of: SO_0000673
so part of: AWJ20_4783
location: complement(<529692..>532442)
location: region:529692-532442:-1
so has part: feature:529692-532442:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:529692-532442:-1:exon

AWJ20_4783
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ADP1
locus tag: AWJ20_4783
note: Putative ATP-dependent permease of the ABC transporter family; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19001347]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence ISS] [PMID 9020838]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence ISS] [PMID 9020838]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: putative ATP-dependent permease ADP1
translation: MCNVTNRKILDILAGKIPQVTFSCNSTSAECDFQFWVDQVESFYCGLSNCTFETEVLSNTNITKYQCPEISCKCVPERMLCGEAGSIDISDFLTETISGPGFFECDRSTKSCKFSEPSMNDLIKSVFGDPYITLECDSSECLHYTELPGYLPPEKSVRRGFVLAAFISALVFILGGAVIFQYFMNRSQNNKLGYLQIPSDSDAAKLMANHQATSLQFEDISYSDKKRPVKILDGVFGQVKEGSVLAIMGGSGAGKTTLLDILASKTKRGVTEGHIYVNGREVISKNRYKKVIGFVDQEDCLIPTLTVYETIVTSALLRLPKSMSDDAKKLRALETMNELGILGLKDQLVGNETNRGISGGEKRRVAIACELVTSPSILFLDEPTSGLDAYNAFNVISSLVHLARNYNRTVVFTIHQPRSNIVAQFDELMLLAKGSVVYSGPQSEASNYFAEIGYPCPSGYNMGDFLIDLAMEADNSGGSSSNGDSAGDDQANEHLSEGGQSNSTESDDIHNPIPRANTIEDSTREWRHYAVHRNELSGEEAHENHLRRRISTTPAIRAPPSLSTLVELYKNSPLAESIRQKIQAQKQAVIDADESNLTSGYETPNQNGDGPETGDDATSPATRGGASSIPKELKGHDKVGVFGQFRILSGRTFKNLYRNPMLLLTHYVMAVLLAVFCGVLYFNVTNDISGFQNRLGLFFFLLALFGFSTLTTLQLFAEERIIFIRERANGYYHPIAYYLAKVMFDIIPLRVFPPILLGLIVYPLVGLSTDGYAFLRFLLILVLFNLTAASTCLLIGIMIQNTGVASLVGCLVMLFSLLFAGLFLNQDSMPAGAVWFKYISIFHYAYEALTVNEVRYLTLTEKKFGLSIEVPGATILSTFGFDSGALWDDVAGLAIVFGLFLIAGYVAMHFFLVERR
SIO_010081: AWJ20_4783
subclass of: SO_0000673
so part of: AWJ20_4783
location: complement(529692..532442)
location: region:529692-532442:-1
so has part: feature:529692-532442:-1:exon

XP_018736313.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:529692-532442:-1:exon

AWJ20_4784
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4784
so part of: sequence
location: complement(<536380..>537141)
location: region:536380-537141:-1
so has part: feature:536380-537141:-1:exon
subclass of: SO_0000010

30036953
type: Gene
SIO_000068: ncbigene

position:536380:-1
position: 536380
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:537141:-1
position: 537141
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:536380-537141:-1:exon

AWJ20_4784
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4784
product: hypothetical protein
transcript id: XM_018881879.1
SIO_010081: AWJ20_4784
subclass of: SO_0000673
so part of: AWJ20_4784
location: complement(<536380..>537141)
location: region:536380-537141:-1
so has part: feature:536380-537141:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:536380-537141:-1:exon

AWJ20_4784
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4784
codon start: 1
product: hypothetical protein
translation: MSVNMVFDAETLADGCLDALTSEAVYYEGTSIKPTEIRPAKPYPFKEGVTLTVRQAFESDRKIKGARARSRYYLFNGEPTRAEDELRFGLDDYFEQAGKGPNSSSNRGYRDDRRSRYRDRDGRRGRDRDQDDDGDLFPLKAGEFRESIRGSDLRGRDSGSDRDRNYDRRPAKRGKSYRYLDRNRSRSPGRDSADEPTPSNDSRSRNLSDRLDTPWVKGDLLEKIDNGRDELADRLDLPRTKDRRNRRKAADLF
SIO_010081: AWJ20_4784
subclass of: SO_0000673
so part of: AWJ20_4784
location: complement(536380..537141)
location: region:536380-537141:-1
so has part: feature:536380-537141:-1:exon

XP_018736314.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:536380-537141:-1:exon

AWJ20_4785
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4785
so part of: sequence
location: complement(<537264..>537707)
location: region:537264-537707:-1
so has part: feature:537264-537707:-1:exon
subclass of: SO_0000010

30036954
type: Gene
SIO_000068: ncbigene

position:537264:-1
position: 537264
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:537707:-1
position: 537707
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:537264-537707:-1:exon

AWJ20_4785
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4785
product: hypothetical protein
transcript id: XM_018881880.1
SIO_010081: AWJ20_4785
subclass of: SO_0000673
so part of: AWJ20_4785
location: complement(<537264..>537707)
location: region:537264-537707:-1
so has part: feature:537264-537707:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:537264-537707:-1:exon

AWJ20_4785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4785
codon start: 1
product: hypothetical protein
translation: MSGQDEGLEIDIDDDFSVRSVKTGAVEGAGSVASEGASVAASAGTATGSDVAVSVEAGAEAVPAVTGAGPVADDSMDVEVTDSRKIEAPGSEGSQPGAEENALVPRPVAVHLIGVNDLSTDEVEKYVGYYYPRIKYRVQWVDDSSCK
SIO_010081: AWJ20_4785
subclass of: SO_0000673
so part of: AWJ20_4785
location: complement(537264..537707)
location: region:537264-537707:-1
so has part: feature:537264-537707:-1:exon

XP_018736315.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:537264-537707:-1:exon

AWJ20_4786
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4786
so part of: sequence
location: complement(<538006..>539226)
location: region:538006-539226:-1
so has part: feature:538006-539226:-1:exon
subclass of: SO_0000010

30036955
type: Gene
SIO_000068: ncbigene

position:538006:-1
position: 538006
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:539226:-1
position: 539226
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:538006-539226:-1:exon

AWJ20_4786
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4786
product: hypothetical protein
transcript id: XM_018881881.1
SIO_010081: AWJ20_4786
subclass of: SO_0000673
so part of: AWJ20_4786
location: complement(<538006..>539226)
location: region:538006-539226:-1
so has part: feature:538006-539226:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:538006-539226:-1:exon

AWJ20_4786
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4786
codon start: 1
product: hypothetical protein
translation: MTVDLNLEGYNVVRQLWLMFYDKDQHNFICHNNSGGPYCKEGRYTLWPVAVTVQAIVDAMRIFPKEIGPMMRPAFEAFDAYYSPKHHAYCASFNYDGNNDVYYDDNAQVASCFLSAYEVTHDKYYLDKAVENVHFLMTGAEKGIYGGVRWHMGKQGSNTCTTAEVGIACMRLARVVQNNQVYIDFAKMCADWIFERVQADDKLIADGLEPDGDHFRLNDAKWTYNQGTPITLCSLLYNAIRDEKYYKYAEGLALAATDHNTAIFDRDTQNMDARYYRDTTYFYQLLAEGLADFLLFFSDKAPQNVLDQIRGELLHTIDYVYKYIRDDQDGLYFQLFSIYEIDQKRADLFRELTGETGKPYKPHEGEREKTDAPVDQRKLVKGLMGCGAAARVLFQTARVHPTIDPK
SIO_010081: AWJ20_4786
subclass of: SO_0000673
so part of: AWJ20_4786
location: complement(538006..539226)
location: region:538006-539226:-1
so has part: feature:538006-539226:-1:exon

XP_018736316.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:538006-539226:-1:exon

AWJ20_4787
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SWA2
locus tag: AWJ20_4787
so part of: sequence
location: <548268..>551057
location: region:548268-551057:1
so has part: feature:548268-551057:1:exon
subclass of: SO_0000010

30036956
type: Gene
SIO_000068: ncbigene

position:548268:1
position: 548268
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:551057:1
position: 551057
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:548268-551057:1:exon

AWJ20_4787
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SWA2
locus tag: AWJ20_4787
product: Swa2p
transcript id: XM_018881882.1
SIO_010081: AWJ20_4787
subclass of: SO_0000673
so part of: AWJ20_4787
location: <548268..>551057
location: region:548268-551057:1
so has part: feature:548268-551057:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:548268-551057:1:exon

AWJ20_4787
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SWA2
locus tag: AWJ20_4787
note: Auxilin-like protein involved in vesicular transport; clathrin-binding protein required for uncoating of clathrin-coated vesicles; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 11553703]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0030276 - clathrin binding [Evidence IDA] [PMID 16687570]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 18948116]; GO_process: GO:0072318 - clathrin coat disassembly [Evidence IMP] [PMID 11146663]; GO_process: GO:0048309 - endoplasmic reticulum inheritance [Evidence IMP] [PMID 11553703]; GO_process: GO:0032781 - positive regulation of ATPase activity [Evidence IDA] [PMID 16687570]
codon start: 1
product: Swa2p
translation: MDSFAELKWSSSGTAPGTGTSSKASSKPGTPAPGQAKGLDSFASLAPMGTGSNKPKKLESLSLQERQNMLQKGNGNAFGTSGGSSSTGGSTWSGLDLLSGGIASSERLGKSTVPASGLSNGASGSGSNSLLDGFDDIPGANEISTGSNTEGNVDPETKEDNIDDLFSVFNKPKVDTAKIEKEKDYETIDRAQDRLSSGSGSRSRATPDRQIQLGDDQDDYGDTEYNGDYDEDDYSAEEGVFGNRGHRSALNSSSNRHNSSNGGSRHSSMAGSRAESRAESRTGSRAGSGRGGSSTPSSISSRGPPAADPRDHAIAELMDMGFSDEQAIYALAQTDTGLDVRQAVDVLMMQAHQKATGQPVTAGSRSNSRRKQKDVPVDDISKLASDLSTQFISKAGSLWSMGKKNLAKAIDQYNSQPSSDGTPAWMRDAQRYVSEDESGTPPIHLDSDSDISIKRGRTGTNRPSRRFNDSDFTDDDTPPPSSSQLATDEAMMLESEGPRSRRNKNPATGHRQQPPVPPPSRRYVDDAQSNSIPVPRAVPDSARTPPPPSNTPPIAQRQQPALSRAQLLRERQKERKDDDVMYVSSSRRRGPTSSNQSSRAPTPSLPAQSPAAPSSRIASPKPSIPPREAVSISPTALTMANTSREQGTEAFKRGDFTQATEHYSQALQSIPPKHLLLTLILTNRSTCYLKCGDAKSALADAEQSLAIIGPGLGANEEVEPGKSLKDIWSKAVARKAEAYEHLEKFQDALDSWTVLISNGYSSKQSMDGKRRCQDALSPKPKPRPVTSSTPSRVSTPANDGPQSAAGKAALARVKNAHATAEKNDSERFILHDSVSSRIESWRHGKEDNLRALLGSLDNILWPESGWKKVSLAELVIPKKVKLVYMKAVARTHPDKVSSTATTEQKMIAEGVFITLNKAWDQFKVANNLS
SIO_010081: AWJ20_4787
subclass of: SO_0000673
so part of: AWJ20_4787
location: 548268..551057
location: region:548268-551057:1
so has part: feature:548268-551057:1:exon

XP_018736317.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:548268-551057:1:exon

AWJ20_4788
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TFB1
locus tag: AWJ20_4788
so part of: sequence
location: complement(<551288..>553303)
location: region:551288-553303:-1
so has part: feature:551288-553303:-1:exon
subclass of: SO_0000010

30036957
type: Gene
SIO_000068: ncbigene

position:551288:-1
position: 551288
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:553303:-1
position: 553303
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:551288-553303:-1:exon

AWJ20_4788
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TFB1
locus tag: AWJ20_4788
product: TFIIH/NER complex subunit TFB1
transcript id: XM_018881883.1
SIO_010081: AWJ20_4788
subclass of: SO_0000673
so part of: AWJ20_4788
location: complement(<551288..>553303)
location: region:551288-553303:-1
so has part: feature:551288-553303:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:551288-553303:-1:exon

AWJ20_4788
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TFB1
locus tag: AWJ20_4788
inference: similar to AA sequence:KEGG_Orthology:K03141
note: Subunit of TFIIH and nucleotide excision repair factor 3 complexes; required for nucleotide excision repair, target for transcriptional activators; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0000439 - core TFIIH complex [Evidence IEA]; GO_component: GO:0000439 - core TFIIH complex [Evidence IDA] [PMID 14500720]; GO_component: GO:0000439 - core TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005675 - holo TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0000112 - nucleotide-excision repair factor 3 complex [Evidence IDA] [PMID 8855246]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0000990 - core RNA polymerase binding transcription factor activity [Evidence IC] [PMID 19818408]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 15909982]; GO_function: GO:0010314 - phosphatidylinositol-5-phosphate binding [Evidence IDA] [PMID 15909982]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IMP] [PMID 7891722]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19450536]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19679665]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006360 - transcription from RNA polymerase I promoter [Evidence IMP] [PMID 12015980]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 19818408]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]
codon start: 1
product: TFIIH/NER complex subunit TFB1
translation: MSAGTTVSTTYPANFKKEPGTIEISDGDRDGNRLFVWKPNNTGSAKPPINIKLETVTQLQATPATSEKLHLKIICTVGDVSSATTPASGQTSQAPATPAAPGSETQSYVFAFKERSVMENTKTTIQKLVQAIRAAVTEKSANGTGQNGTSNGGANGTANNNNNNMNRPENKQAVVELDSKKLLLNLNLQQGLLRENKELMRTFQETVINGGLANDKFWNTRIHLLRAYALTSSQKRGAYNVLGTIRPTTGSDNQINVSLTREKIHDIFDQYPIVRQAYSDSVPGKMTEGSFWERFFLSRLFRRLRGEKVPQTHLVDAILDTKYLTLYEEEQEGYNNRILGIVSTTSTSSGSSITNNNSNNNINANNKRTREDDPISADNNDDNRPAGEVTDDMYHKIVPQYLDIGGNEENDPQKLGNLPDITMQPGKSDASSISLIRSMNSLSQRMLYGNATSRIISGRQEPASTEVSSLGDQLKFDDLESDSVADSNIELHLVNEPGISINGKSNSHEADDTTVIEQIRDRYSKSLQTGSSINLNDVGNNTEDLKAAVGQVTSIIELRSQESDQASNIWTSNEQDKRLLDQVQLCHATSVEFLRHFWLHFLSGDPNQASSISKLVTNLAKSLERIDAVSKAAPTPDAQNHARASLGPLKTSILTALDRYEKALEASSAEK
SIO_010081: AWJ20_4788
subclass of: SO_0000673
so part of: AWJ20_4788
location: complement(551288..553303)
location: region:551288-553303:-1
so has part: feature:551288-553303:-1:exon

XP_018736318.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:551288-553303:-1:exon

AWJ20_4789
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SSZ1
locus tag: AWJ20_4789
so part of: sequence
location: <553633..>555303
location: region:553633-555303:1
so has part: feature:553633-555303:1:exon
subclass of: SO_0000010

30036958
type: Gene
SIO_000068: ncbigene

position:553633:1
position: 553633
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:555303:1
position: 555303
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:553633-555303:1:exon

AWJ20_4789
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SSZ1
locus tag: AWJ20_4789
product: Ssz1p
transcript id: XM_018881884.1
SIO_010081: AWJ20_4789
subclass of: SO_0000673
so part of: AWJ20_4789
location: <553633..>555303
location: region:553633-555303:1
so has part: feature:553633-555303:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:553633-555303:1:exon

AWJ20_4789
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SSZ1
locus tag: AWJ20_4789
note: Hsp70 protein that interacts with Zuo1p (a DnaJ homolog); interacts with Zuo1p to form a ribosome-associated complex that binds the ribosome via the Zuo1p subunit; also involved in pleiotropic drug resistance via sequential activation of PDR1 and PDR5; binds ATP; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10792726]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 16413483]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IGI,IPI] [PMID 11054575]; GO_function: GO:0051082 - unfolded protein binding [Evidence ISS] [PMID 9488429]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IGI,IPI] [PMID 11054575]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IGI,IMP] [PMID 11929994]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 20368619]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence IMP] [PMID 15456889]; GO_process: GO:0006452 - translational frameshifting [Evidence IMP] [PMID 16607023]
codon start: 1
product: Ssz1p
translation: MSGPTVIGLAFGNTTSSIAIEKDGKVELIANQDGDRAIASVISYVGSDEYHGAQAKAQLIRNAKNTVAYFRDFLGVSFDNVDPTNSHASAHPVELNGQASFSLKTEDDDEETGEVKPAKLLSVHEIAVRHLDRLRESAADYIGKAIDGAVIAVPTDYSEERRQAIVAAAKDANLKILQVINEPTAALLAHVSANGDSTDKKYAVIDIGGTRSDGAIIASRGGIFTILTTLHNYELGGKNLDEALVDFFAKDFEKQHKVDPKTEARAVAKLLAESESTKKTLSNTSSANFAVESVAQGYDYSLSINRLRFEVAARSVFTKITQFVEELIKKANLDVLDIDEVLLVGGTSAVPKVATSIASLFDESVTKISAPAFDTKAIQPDELISRGAAIQASLVAGYDDEEINESLQAVVTVAPHTTKSIGVKVGDNEYVEVIASETALPIRKTVTLSTPADATAVLVGVYEGASEIVVTKVEKEEKKDDAEDDESDWSEDEEDEEIRTKVLKPAAKIAELGLQNIPAGSKVEVVLNITRELKLQIAARAGSVAVRGETAVAHVA
SIO_010081: AWJ20_4789
subclass of: SO_0000673
so part of: AWJ20_4789
location: 553633..555303
location: region:553633-555303:1
so has part: feature:553633-555303:1:exon

XP_018736319.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:553633-555303:1:exon

AWJ20_4790
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PXA1
locus tag: AWJ20_4790
so part of: sequence
location: complement(<555554..>558037)
location: region:555554-558037:-1
so has part: feature:555554-558037:-1:exon
subclass of: SO_0000010

30036960
type: Gene
SIO_000068: ncbigene

position:555554:-1
position: 555554
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:558037:-1
position: 558037
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:555554-558037:-1:exon

AWJ20_4790
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PXA1
locus tag: AWJ20_4790
product: ATP-binding cassette long-chain fatty acid transporter PXA1
transcript id: XM_018881886.1
SIO_010081: AWJ20_4790
subclass of: SO_0000673
so part of: AWJ20_4790
location: complement(<555554..>558037)
location: region:555554-558037:-1
so has part: feature:555554-558037:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:555554-558037:-1:exon

AWJ20_4790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PXA1
locus tag: AWJ20_4790
inference: similar to AA sequence:KEGG_Orthology:K15628
note: Subunit of a heterodimeric peroxisomal ABC transport complex; required for import of long-chain fatty acids into peroxisomes; similarity to human adrenoleukodystrophy transporter ABCD1 and ABCD2 and ALD-related proteins; mutations in ABCD1 cause X-linked adrenoleukodystrophy (X-ALD), a peroxisomal disorder; complex also includes Pxa2p; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005779 - integral component of peroxisomal membrane [Evidence IDA] [PMID 8670886]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IMP,ISS] [PMID 8670886]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0015908 - fatty acid transport [Evidence IMP] [PMID 8670886]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]
codon start: 1
product: ATP-binding cassette long-chain fatty acid transporter PXA1
translation: MAASSTLRSDRTKRMLMMYAQLALSLAQNPRLALQLIRSQYRYSSGRIKAVILLLALLTAGSVTFGITELQKRRKRDAKERRELHRQSSSVLLSDGWSREIFVPTANKPLTSKSKSSTVESGEVSGDATARVVIKPTKKVTFEAHRRLFLQSGSGGKSGNGSVAEKKAGVNRQFLKEFSAIWSIIVPRLQSKTSALLFIHALFLASRTYLSLLVAKLDGQIVRDLIAANGKDFLRGLGYWFLLAIPASYTNAMIRFLQAKISIAFRTKLIRYIHDIYLSKELGYYKVTNIDGGIEGADQYITADVTRFCDSAASLYSNLGKPFADFIIFSYQLQRNLGPLALIGIFSNYALTAWLLKSVAPPFGRLAAAEARLEGDYRNAHTKLITNAEEIAFYDGTGFERAILDKTYKRVIVHISKILKIKVSYNMFEDFILKYSWSALGYMFASLPVFLPTWSGNDGISELATTTPSISLAKRDFRERDRMKQFITNKRLMLSLADAGGRMMYSIKDLAELAGYTSRVFQLLSTLHRVHANSYGHELAPNEVAEPFTLADVHGTVQQGFEGVRFEHTPIVIPGLARTGQPGEVLIKDLNIRINPGDHILISGANGVGKSSIARVLAGLWPVYRGLVSKPLPKDITFLPQRPYLSHGTLRDQIIYPDSHADMLEAGGTDAKLMEILKLVRLEYIPGREGGWETRKQWKDVFSGGEKQRVMFARILYKNPKFAVIDEGTSAVSADVEGLLYEICKKQSITLVTISHRPSLLKYHTAQLRVGLGANGDEWSLERSGTAEARLTVDKEIEDLKAKLSQVDAWKARRQQIVDELSGKTAA
SIO_010081: AWJ20_4790
subclass of: SO_0000673
so part of: AWJ20_4790
location: complement(555554..558037)
location: region:555554-558037:-1
so has part: feature:555554-558037:-1:exon

XP_018736320.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:555554-558037:-1:exon

AWJ20_4791
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4791
so part of: sequence
location: complement(<558555..>558671)
location: region:558555-558671:-1
so has part: feature:558555-558671:-1:exon
subclass of: SO_0000573

30036961
type: Gene
SIO_000068: ncbigene

position:558555:-1
position: 558555
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:558671:-1
position: 558671
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:558555-558671:-1:exon

AWJ20_4791
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 796027
locus tag: AWJ20_4791
product: 8S ribosomal RNA
transcript id: XR_001989277.1
SIO_010081: AWJ20_4791
subclass of: SO_0000673
so part of: AWJ20_4791
location: complement(558555..558671)
location: region:558555-558671:-1
so has part: feature:558555-558671:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:558555-558671:-1:exon

AWJ20_4792
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: KCH1
locus tag: AWJ20_4792
so part of: sequence
location: complement(<558873..>561473)
location: region:558873-561473:-1
so has part: feature:558873-561473:-1:exon
subclass of: SO_0000010

30036962
type: Gene
SIO_000068: ncbigene

position:558873:-1
position: 558873
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:561473:-1
position: 561473
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:558873-561473:-1:exon

AWJ20_4792
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: KCH1
locus tag: AWJ20_4792
product: Kch1p
transcript id: XM_018881887.1
SIO_010081: AWJ20_4792
subclass of: SO_0000673
so part of: AWJ20_4792
location: complement(<558873..>561473)
location: region:558873-561473:-1
so has part: feature:558873-561473:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:558873-561473:-1:exon

AWJ20_4792
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: KCH1
locus tag: AWJ20_4792
note: Potassium transporter that mediates K+ influx; activates high-affinity Ca2+ influx system (HACS) during mating pheromone response; expression up-regulated in response to alpha factor; localized to sites of polarized growth; member of a fungal-specific gene family; potential Cdc28p substrate; KCH1 has a paralog, PRM6, that arose from the whole genome duplication; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 23204190]; GO_component: GO:0005937 - mating projection [Evidence IDA] [PMID 23204190]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015079 - potassium ion transmembrane transporter activity [Evidence IDA] [PMID 23204190]; GO_process: GO:0071805 - potassium ion transmembrane transport [Evidence IDA] [PMID 23204190]
codon start: 1
product: Kch1p
translation: MYVGILLAIAAFASDIYTGIVLLAFDRWSSTIEPYVPFRISRWLFGGCIILSVLLFIYDFIVAYTTIRTKNISLNYTDPIARNVYSIRGYRYFCLFAKLTKSRSLTEYVALFVYFSFKGWIRLIFADSPRQVLNALTLYSVLQIQGNFVSTIKKLAQNSTVEAVVIGFMAFSLLVWVVNIIQFGLALICAVPIYIHIGDQASGLEEYCCVKVNKRIARLVEKYHRKGMKELAEANKKLEKQPSLPRVDTSTLDSHSRYNEKASYSFDQLSSLQPSSSLKQDTFGPGPRTRPGEQPYRNRAGVYRNQSAPRSQTQPQLQPRANKNDTLYREYPVNTPDLGASTTSVDSISGGITGGGGYGYDSTENDNAPLLDQNARTKTPAPVLPRNNTSQTNIYNRRPSVPPKGANLSTPRENFVPNQSNRNANPYQTQQPNTNSNPFPTNQFNPNVNQYQNNGQKPYRNMATNTRVQQPYQPSNVAPTGMSNYSQAPSFGTQPNFPNTVQTSDQSQTGLQDYDGRPPRPDPYRLVPFPDPNAERQRPTPYPVDGRSLTSTPFNTTNPLSSYPANISQGPVVPQGMELRSVPQQPVVVVDQPRPLVKQKSLPIQTQIPPKSVSRQKTMPAAIPVNKEMPMSRKSTLLPDEIEHREPKLPFSSVPDTNLPSSRGSKLEPSDLEFREPKLPFTSTVENDPSSDESDADTFDFGKPELSAHLRRQLSAETKPSPEELKSREPKLPFESTSEENHSTTDHKTAADLRKSKLSPTELQFREPKLPNLQDRNPFRQSTSSLSDAEEDLIVYSNDEISSPEQPPPFGHDNHPRGPSPVSFVFQPNAPPKAAARLRQPTIPKITFEDTSSPASQQSGRPSPFY
SIO_010081: AWJ20_4792
subclass of: SO_0000673
so part of: AWJ20_4792
location: complement(558873..561473)
location: region:558873-561473:-1
so has part: feature:558873-561473:-1:exon

XP_018736321.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:558873-561473:-1:exon

AWJ20_4793
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PMT4
locus tag: AWJ20_4793
so part of: sequence
location: <565732..>567987
location: region:565732-567987:1
so has part: feature:565732-567987:1:exon
subclass of: SO_0000010

30036963
type: Gene
SIO_000068: ncbigene

position:565732:1
position: 565732
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:567987:1
position: 567987
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:565732-567987:1:exon

AWJ20_4793
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PMT4
locus tag: AWJ20_4793
product: Pmt4p
transcript id: XM_018881888.1
SIO_010081: AWJ20_4793
subclass of: SO_0000673
so part of: AWJ20_4793
location: <565732..>567987
location: region:565732-567987:1
so has part: feature:565732-567987:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:565732-567987:1:exon

AWJ20_4793
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PMT4
locus tag: AWJ20_4793
inference: similar to AA sequence:KEGG_Orthology:K00728
note: Protein O-mannosyltransferase; transfers mannose residues from dolichyl phosphate-D-mannose to protein serine/threonine residues; appears to form homodimers in vivo and does not complex with other Pmt proteins; target for new antifungals; GO_component: GO:0097586 - dolichyl-phosphate-mannose-protein mannosyltransferase Pmt4p homodimer complex [Evidence IPI] [PMID 12551906]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0004169 - dolichyl-phosphate-mannose-protein mannosyltransferase activity [Evidence IEA]; GO_function: GO:0004169 - dolichyl-phosphate-mannose-protein mannosyltransferase activity [Evidence IDA,IMP] [PMID 21956107]; GO_function: GO:0004169 - dolichyl-phosphate-mannose-protein mannosyltransferase activity [Evidence IMP,ISS] [PMID 8585318]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0006493 - protein O-linked glycosylation [Evidence IEA]; GO_process: GO:0006493 - protein O-linked glycosylation [Evidence IMP,ISS] [PMID 8585318]; GO_process: GO:0035269 - protein O-linked mannosylation [Evidence IMP] [PMID 18182384]; GO_process: GO:0035269 - protein O-linked mannosylation [Evidence IMP] [PMID 21231968]; GO_process: GO:1900101 - regulation of endoplasmic reticulum unfolded protein response [Evidence IGI] [PMID 21231968]
codon start: 1
product: Pmt4p
translation: MPSELRNRKGASATLRSPEPVEKKKAKKPVFKSTVADSNTDNRYRLAKIIVTVFAFATRFYLINDPKEVVFDEVHFGKFASYYLEGTYFFDLHPPFAKMLIAFVGWLVGYDGAFKFENIGDSYIANRVPYVAYRSLSATLGALTVPIVFETLQECGFSVWACVIGSSLILFDNAHIAETRLILLDATLIISVALSLYAYVRFSKQRDSPFSRDWWTWLLATGVSLSFVISTKYVGAFTFTTVGAAVLIDLWNLLDYRRGLSMKEFGKHFFARLFSLIFVPLCIFLFWFWVHFAILTKSGPGDGFMSSKFQETLGDNILAKLAKQVNYYDEITISHKESPLFLSSGSIHYPLRYDDGRISSQGQLVSTQELVNGAPTNDQIWQIVPVVDFPEGHREGIPIETETQVRLKHVSTNSFLLAHDVASPYYPTNEEFTTASFEEAEGPRFNDTLFEIRSVTGEKDILKTKGSFFRLIHVPTRVAMWTHDDKQLPAEWASGHYEVNGVKNVHERTATWFVDEIVNLTDPERLKFTPRAPRKMNFFRKYLELQYTMFAQNNALTSSHPYASEPITWPFLVRGVSFWTKDTERRQIYFIGNFIGWWIEAAMLAIYAGVVVADQLTRRRAMYPINDVARSKIYNSLGFFFIAWATHYFPFFLMGRQKFLHHYLPAHLAAALLTGGLYDFVFCELDDEAVHAAQSGKKRSNWRLKIVSVISLVGIVICFAYFSPLTYGNTPLTPAEVRARQWMDIELHFAK
SIO_010081: AWJ20_4793
subclass of: SO_0000673
so part of: AWJ20_4793
location: 565732..567987
location: region:565732-567987:1
so has part: feature:565732-567987:1:exon

XP_018736322.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:565732-567987:1:exon

AWJ20_4794
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TFB3
locus tag: AWJ20_4794
so part of: sequence
location: <569415..>570353
location: region:569415-570353:1
so has part: feature:569415-570353:1:exon
subclass of: SO_0000010

30036964
type: Gene
SIO_000068: ncbigene

position:569415:1
position: 569415
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:570353:1
position: 570353
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:569415-570353:1:exon

AWJ20_4794
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TFB3
locus tag: AWJ20_4794
product: TFIIH/NER complex subunit TFB3
transcript id: XM_018881889.1
SIO_010081: AWJ20_4794
subclass of: SO_0000673
so part of: AWJ20_4794
location: <569415..>570353
location: region:569415-570353:1
so has part: feature:569415-570353:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:569415-570353:1:exon

AWJ20_4794
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TFB3
locus tag: AWJ20_4794
inference: similar to AA sequence:KEGG_Orthology:K10842
note: Subunit of TFIIH and nucleotide excision repair factor 3 complexes; involved in transcription initiation, required for nucleotide excision repair; ring finger protein similar to mammalian CAK and TFIIH subunit; GO_component: GO:0070985 - TFIIK complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0005675 - holo TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0000990 - core RNA polymerase binding transcription factor activity [Evidence IC] [PMID 19818408]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IMP] [PMID 10681587]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19450536]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19679665]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 19818408]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]
codon start: 1
product: TFIIH/NER complex subunit TFB3
translation: MCPICKSSRYLNPDMRFLVNPECYHKICESCVDRIFSVGPAQCPYAGCEKILRKNKFKTQVFEDLGVEREVDIRARVSRTFNKRQQDFDSLDDYNDYLEEVENIIFNLVNGVDVEATESKLQAYEQANRNIILANSLRQKQEDEQMEELQSLETQRRRKAQLLALQAEEDERRIKEQTEKELVRQLATGEGDAAAIMKNVSNMALKRSSARRRQLEEELRQPLSIPLRLRGARSATPGNATPFTPFNGDRQQEYLFTVNDEYFDPLMNDVANNPQYRASGFSVKGSFRQALVSAFFGIGCDVQHEKAAPLAV
SIO_010081: AWJ20_4794
subclass of: SO_0000673
so part of: AWJ20_4794
location: 569415..570353
location: region:569415-570353:1
so has part: feature:569415-570353:1:exon

XP_018736323.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:569415-570353:1:exon

AWJ20_4795
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RCR2
locus tag: AWJ20_4795
so part of: sequence
location: <571975..>572736
location: region:571975-572736:1
so has part: feature:571975-572736:1:exon
subclass of: SO_0000010

30036965
type: Gene
SIO_000068: ncbigene

position:571975:1
position: 571975
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:572736:1
position: 572736
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:571975-572736:1:exon

AWJ20_4795
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RCR2
locus tag: AWJ20_4795
product: Rcr2p
transcript id: XM_018881890.1
SIO_010081: AWJ20_4795
subclass of: SO_0000673
so part of: AWJ20_4795
location: <571975..>572736
location: region:571975-572736:1
so has part: feature:571975-572736:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:571975-572736:1:exon

AWJ20_4795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RCR2
locus tag: AWJ20_4795
note: Vacuolar protein; presumably functions within the endosomal-vacuolar trafficking pathway, affecting events that determine whether plasma membrane proteins are degraded or routed to the plasma membrane; RCR2 has a paralog, RCR1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 17287526]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 15590673]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0031982 - vesicle [Evidence IDA] [PMID 17287526]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IGI] [PMID 17287526]
codon start: 1
product: Rcr2p
translation: MYLYLAEALLVRRDNNDDLVCDDEGDCYYNTPWYNYGRWLVVAAIAIVFAVSIYLMRRNAANRLRGAMAPLSNRGWTWVPPTYHQSQRDYSNTTQAPPAAPPYNRSLGTEDAGYYDSYGNFIQTGPVHTVAPPTGPPPPPSPLSPVDSSGVQIPPPVLHHPSNYEMRDVYPSDRKSPSVFTYGPFPEDRYEDLSGPSNGSSSDPNHIIHHENSSNDPSSAAGGPSFVELGGASVPPVDDPEHHLVPPPSQQHN
SIO_010081: AWJ20_4795
subclass of: SO_0000673
so part of: AWJ20_4795
location: 571975..572736
location: region:571975-572736:1
so has part: feature:571975-572736:1:exon

XP_018736324.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:571975-572736:1:exon

AWJ20_4796
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: FOL2
locus tag: AWJ20_4796
so part of: sequence
location: complement(<573354..>574247)
location: region:573354-574247:-1
so has part: feature:573354-574247:-1:exon
subclass of: SO_0000010

30036966
type: Gene
SIO_000068: ncbigene

position:573354:-1
position: 573354
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:574247:-1
position: 574247
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:573354-574247:-1:exon

AWJ20_4796
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: FOL2
locus tag: AWJ20_4796
product: GTP cyclohydrolase I
transcript id: XM_018881891.1
SIO_010081: AWJ20_4796
subclass of: SO_0000673
so part of: AWJ20_4796
location: complement(<573354..>574247)
location: region:573354-574247:-1
so has part: feature:573354-574247:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:573354-574247:-1:exon

AWJ20_4796
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: FOL2
locus tag: AWJ20_4796
inference: similar to AA sequence:KEGG_Orthology:K01495
note: GTP-cyclohydrolase I; catalyzes the first step in the folic acid biosynthetic pathway; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0003934 - GTP cyclohydrolase I activity [Evidence IEA,IEA]; GO_function: GO:0003934 - GTP cyclohydrolase I activity [Evidence IMP] [PMID 8573145]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0035998 - 7,8-dihydroneopterin 3'-triphosphate biosynthetic process [Evidence IEA]; GO_process: GO:0046656 - folic acid biosynthetic process [Evidence IEA]; GO_process: GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IMP] [PMID 8573145]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IEA]
codon start: 1
product: GTP cyclohydrolase I
translation: MAHTEPSKLDLSAAAATNESAIVDSDSVPAGEHDSRSIVPSTVPSHHRAPSGAPSGPVATAPNQYPKYIEHLTRLADARPSSPYLNPIDYDGLSWPSVGARERLESSVEEKAAREKRIADAVRTLLTELGEDPNRSGLLETPERYARAMLFFTKGYEDNVKDVIKNALFEEDHDEMVIVKDIDVFSLCEHHLVPFYGKIHIGYIPNSRVIGLSKLARLAEMFARRLQVQERLTKQVAMALWELLQPQGVAVVMEASHMCMVMRGVQKPGSSTTTSCMLGRFREAQRTREEFLSLLKK
SIO_010081: AWJ20_4796
subclass of: SO_0000673
so part of: AWJ20_4796
location: complement(573354..574247)
location: region:573354-574247:-1
so has part: feature:573354-574247:-1:exon

XP_018736325.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:573354-574247:-1:exon

AWJ20_4797
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: HUA1
locus tag: AWJ20_4797
so part of: sequence
location: complement(<577671..>578729)
location: region:577671-578729:-1
so has part: feature:577671-578729:-1:exon
subclass of: SO_0000010

30036967
type: Gene
SIO_000068: ncbigene

position:577671:-1
position: 577671
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:578729:-1
position: 578729
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:577671-578729:-1:exon

AWJ20_4797
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: HUA1
locus tag: AWJ20_4797
product: Hua1p
transcript id: XM_018881892.1
SIO_010081: AWJ20_4797
subclass of: SO_0000673
so part of: AWJ20_4797
location: complement(<577671..>578729)
location: region:577671-578729:-1
so has part: feature:577671-578729:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:577671-578729:-1:exon

AWJ20_4797
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: HUA1
locus tag: AWJ20_4797
note: Cytoplasmic protein containing a zinc finger domain; sequence similarity to that of Type I J-proteins; computational analysis of large-scale protein-protein interaction data suggests a possible role in actin patch assembly; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11489916]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]
codon start: 1
product: Hua1p
translation: MSTNPFISHKPVPISNNTGGSSRNGDSRLSQYNTNGGSSRPNTSTTGGDASSTLSIPRTETGSYSRSSIGSGNSESNSTSNHILPPEEEHPDEEPPPYTPEAEPGMSVAGMSNIPPHIQAQISMATGNSQTSNNNFQNHAHNQSHVNNSHPQSQTYHPPPHPPPPARPPRPTTASSSSPARPPRPQSSAFPGSNYHSYGQTNNSHNRPTTSQHQAYHHRPGNANTNHPPPQNPNLPFTYPPGYYCYKCNNTGIKLKNGLTCQDCYGRFARQGRNVQVIHSGQPSMFNPLAPFMGPTTSYVPYYPGQPPPRVVRPGDPSIGGTLCGRCRGRGMISDFFGDETCPTCRGVGRLL
SIO_010081: AWJ20_4797
subclass of: SO_0000673
so part of: AWJ20_4797
location: complement(577671..578729)
location: region:577671-578729:-1
so has part: feature:577671-578729:-1:exon

XP_018736326.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:577671-578729:-1:exon

AWJ20_4798
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4798
so part of: sequence
location: <580480..>580551
location: region:580480-580551:1
so has part: feature:580480-580551:1:exon
subclass of: SO_0000663

30036968
type: Gene
SIO_000068: ncbigene

position:580480:1
position: 580480
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:580551:1
position: 580551
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:580480-580551:1:exon

AWJ20_4798
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_4798
product: tRNA-Thr
SIO_010081: AWJ20_4798
subclass of: SO_0000673
so part of: AWJ20_4798
location: <580480..>580551
location: region:580480-580551:1
so has part: feature:580480-580551:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:580480-580551:1:exon

AWJ20_4799
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4799
so part of: sequence
location: complement(<586370..>587032)
location: region:586370-587032:-1
so has part: feature:586370-587032:-1:exon
subclass of: SO_0000010

30036969
type: Gene
SIO_000068: ncbigene

position:586370:-1
position: 586370
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:587032:-1
position: 587032
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:586370-587032:-1:exon

AWJ20_4799
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4799
product: hypothetical protein
transcript id: XM_018881893.1
SIO_010081: AWJ20_4799
subclass of: SO_0000673
so part of: AWJ20_4799
location: complement(<586370..>587032)
location: region:586370-587032:-1
so has part: feature:586370-587032:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:586370-587032:-1:exon

AWJ20_4799
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4799
codon start: 1
product: hypothetical protein
translation: MNIAEILNDDGEERIHNNASSRSTSPRSGSPVKRPRNSSDIEGGSDPKRLADGSTSTLKSDSTPLQQSPSAAGPSESGNSNLNTRNSTGGLPRDIEPEPTAASSTIASGSSSSLASIPGPSIGSSVVKSEPTTEGAPVATVSGGESEGTPAADKKGKSKRSKAKNSTWAIEDDRKLVDLVMSTLPTQDFAEYARVLNKRDAQTIRYRWKVILRRAKGEGL
SIO_010081: AWJ20_4799
subclass of: SO_0000673
so part of: AWJ20_4799
location: complement(586370..587032)
location: region:586370-587032:-1
so has part: feature:586370-587032:-1:exon

XP_018736327.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:586370-587032:-1:exon

AWJ20_4800
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4800
so part of: sequence
location: complement(<595111..>595182)
location: region:595111-595182:-1
so has part: feature:595111-595182:-1:exon
subclass of: SO_0000663

30036972
type: Gene
SIO_000068: ncbigene

position:595111:-1
position: 595111
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:595182:-1
position: 595182
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:595111-595182:-1:exon

AWJ20_4800
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_4800
product: tRNA-Thr
SIO_010081: AWJ20_4800
subclass of: SO_0000673
so part of: AWJ20_4800
location: complement(<595111..>595182)
location: region:595111-595182:-1
so has part: feature:595111-595182:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:595111-595182:-1:exon

AWJ20_4801
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4801
so part of: sequence
location: complement(<595202..>595273)
location: region:595202-595273:-1
so has part: feature:595202-595273:-1:exon
subclass of: SO_0000663

30036973
type: Gene
SIO_000068: ncbigene

position:595202:-1
position: 595202
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:595273:-1
position: 595273
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:595202-595273:-1:exon

AWJ20_4801
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_4801
product: tRNA-Thr
SIO_010081: AWJ20_4801
subclass of: SO_0000673
so part of: AWJ20_4801
location: complement(<595202..>595273)
location: region:595202-595273:-1
so has part: feature:595202-595273:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:595202-595273:-1:exon

AWJ20_4802
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: UGA1
locus tag: AWJ20_4802
so part of: sequence
location: complement(<595567..>597051)
location: region:595567-597051:-1
so has part: feature:595567-597051:-1:exon
subclass of: SO_0000010

30036974
type: Gene
SIO_000068: ncbigene

position:595567:-1
position: 595567
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:597051:-1
position: 597051
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:595567-597051:-1:exon

AWJ20_4802
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: UGA1
locus tag: AWJ20_4802
product: 4-aminobutyrate transaminase
transcript id: XM_018881896.1
SIO_010081: AWJ20_4802
subclass of: SO_0000673
so part of: AWJ20_4802
location: complement(<595567..>597051)
location: region:595567-597051:-1
so has part: feature:595567-597051:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:595567-597051:-1:exon

AWJ20_4802
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: UGA1
locus tag: AWJ20_4802
inference: similar to AA sequence:KEGG_Orthology:K13524
note: Gamma-aminobutyrate (GABA) transaminase; also known as 4-aminobutyrate aminotransferase; involved in the 4-aminobutyrate and glutamate degradation pathways; required for normal oxidative stress tolerance and nitrogen utilization; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 23740823]; GO_function: GO:0003867 - 4-aminobutyrate transaminase activity [Evidence IEA,IEA]; GO_function: GO:0003867 - 4-aminobutyrate transaminase activity [Evidence IMP] [PMID 3888627]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009450 - gamma-aminobutyric acid catabolic process [Evidence IMP] [PMID 3888627]; GO_process: GO:0009448 - gamma-aminobutyric acid metabolic process [Evidence IEA]
codon start: 1
product: 4-aminobutyrate transaminase
translation: MIRSVTRSSLLRNRVAGARLTRLSSSVAASYFPNEPTAPSVKTAIPGPQTKAALEKLNKSMDIPAAYFVADYYKSLGNYIVDVDGNVLLDVYAQIASIALGYNNPALIEAAKSDAMINSLVNRPATGNFPSNDYADILEKGIMAAAPKGFSNVWTALSGSDANETAFKAAFIYQASKKRGSGGFTQEELTTTMSNQAPGSPAGSILSFESSFHGRLFGSLSATRSKPIHKLDIPAFDWPKAPFPRLQYPLEANVEANKQEEKRCLEEFEKILTTWKTPVAAVIVEPILSEGGDFHASRDFFQGIRDITKKHDVVMIVDEVQTGVGGTGKLWAHEHWNLDSVPDIVTFSKKAQAAGYYFSNPELRPKLAYRQFNTWCGDPSKAIIASAIFNEIKKNNLVERTAQVGDYLFGKLEALATKYPQNIANLRGKGQGTFIAWDCSSPEFRDNFIKKAKELGVNIGGCGVQAIRLRPALTFEEKHADILLDVVEKIVASA
SIO_010081: AWJ20_4802
subclass of: SO_0000673
so part of: AWJ20_4802
location: complement(595567..597051)
location: region:595567-597051:-1
so has part: feature:595567-597051:-1:exon

XP_018736328.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:595567-597051:-1:exon

AWJ20_4803
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SET2
locus tag: AWJ20_4803
so part of: sequence
location: complement(<598643..>601018)
location: region:598643-601018:-1
so has part: feature:598643-601018:-1:exon
subclass of: SO_0000010

30036975
type: Gene
SIO_000068: ncbigene

position:598643:-1
position: 598643
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:601018:-1
position: 601018
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:598643-601018:-1:exon

AWJ20_4803
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SET2
locus tag: AWJ20_4803
product: histone methyltransferase SET2
transcript id: XM_018881897.1
SIO_010081: AWJ20_4803
subclass of: SO_0000673
so part of: AWJ20_4803
location: complement(<598643..>601018)
location: region:598643-601018:-1
so has part: feature:598643-601018:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:598643-601018:-1:exon

AWJ20_4803
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SET2
locus tag: AWJ20_4803
inference: similar to AA sequence:KEGG_Orthology:K11423
codon start: 1
product: histone methyltransferase SET2
translation: MSKISRPIKVIEFSDSDDDLYGDKPSKQNGSHGPAENSVSSEKVRVAAAPSKVLKKENNIKISTSKPKVEIIDISNDDKSDIDEDDEPVSGAGRRARGNGTVTRSDLKQENTITDGDSAGSEEPVDPFDDQIKPKSEDKKNVKVTRQLFNDLESKTAEAQSTYIQLEQCTYQGRGNIGSSGQVEAMNCDCREHWVNGKNIACGDDSDCINRLTSIECTNDNCTCGDDCGNQRFQAKQYANVDVIQTELKGYGVRALEAIPQNTFIYEYIGEVIDESNFRQRMETYKLEGIRHFYFMMLQKGEFIDATKQGSMARFCNHSCRPNCYVDKWIVGDKVRMGIFSKRDIIKGEEITFDYNVDRYGTQAQPCYCGESNCIGILGGKTQTEAAATKLPQLIVDVLDLTRQDEKQWLSIAKKFKKDGRDGKYATADASGASDEDLYREYSLSLPAKPVQEESVTKIMSALLQGQEQWLIEKLVNRIFITDDSSVHGQVMRMHGYQVFSVILAADWPNDVVPLMILEILTRWPRLTKNKISSSKIESIVAGLAKDSTSDKVQKLASTLLQEWSSLEMAYRIPRRERGAKESTNSNSASGTPQEEGASSSPTRPAYPRAYGSNSHDNIQDNRGEKLPRRDWGAKDNYNNRGRERDYDNRYRRNRTRSPSPLPSGWETALAPDGRRYYFNRTTGLSSWTLPKEGSPQKDSRIIPDNEREKAELLQKEQERLQIEQIIESANQSRQNIVLLQQQKINELQSIVDAVKTKSSHRSSHRPSSEKKKKREDDTPESVFTRTVSST
SIO_010081: AWJ20_4803
subclass of: SO_0000673
so part of: AWJ20_4803
location: complement(598643..601018)
location: region:598643-601018:-1
so has part: feature:598643-601018:-1:exon

XP_018736329.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:598643-601018:-1:exon

AWJ20_4804
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4804
so part of: sequence
location: complement(<601398..>602336)
location: region:601398-602336:-1
so has part: feature:601398-602336:-1:exon
subclass of: SO_0000010

30036976
type: Gene
SIO_000068: ncbigene

position:601398:-1
position: 601398
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:602336:-1
position: 602336
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:601398-602336:-1:exon

AWJ20_4804
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4804
product: hypothetical protein
transcript id: XM_018881898.1
SIO_010081: AWJ20_4804
subclass of: SO_0000673
so part of: AWJ20_4804
location: complement(<601398..>602336)
location: region:601398-602336:-1
so has part: feature:601398-602336:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:601398-602336:-1:exon

AWJ20_4804
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4804
codon start: 1
product: hypothetical protein
translation: MSCPPPWTPLLDSCLKAVEKLPTFTFCTVSHNRIPHARTCVSRGWLFDDKSTGVLVFTTDMRMQKVSDLNETNDAYEACFYFPNKSTQIRLSGFAQLLSPNHTPQLSSTLPLSQPVKSSPPSSGSSSRSGSPSGNPGSPNPNNSSAPVAVPDSSSNNTANNEAKGTSSSPSETILAPLASAATSRKHLPRSYYPVITPSYDPSTDYDSIFPPPTAEEWLNEYNRLWSSMSPRMKKTFKYPTPKSLLDGSTTKALDSISRGVDGASEDSGKEHFVVVLMLVNQVDIVVDESIGRRTLFTRVRYDEWKEQDLSP
SIO_010081: AWJ20_4804
subclass of: SO_0000673
so part of: AWJ20_4804
location: complement(601398..602336)
location: region:601398-602336:-1
so has part: feature:601398-602336:-1:exon

XP_018736330.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:601398-602336:-1:exon

AWJ20_4805
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ARC1
locus tag: AWJ20_4805
so part of: sequence
location: complement(<604056..>604766)
location: region:604056-604766:-1
so has part: feature:604056-604766:-1:exon
subclass of: SO_0000010

30036977
type: Gene
SIO_000068: ncbigene

position:604056:-1
position: 604056
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:604766:-1
position: 604766
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:604056-604766:-1:exon

AWJ20_4805
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ARC1
locus tag: AWJ20_4805
product: Arc1p
transcript id: XM_018881899.1
SIO_010081: AWJ20_4805
subclass of: SO_0000673
so part of: AWJ20_4805
location: complement(<604056..>604766)
location: region:604056-604766:-1
so has part: feature:604056-604766:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:604056-604766:-1:exon

AWJ20_4805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ARC1
locus tag: AWJ20_4805
inference: similar to AA sequence:KEGG_Orthology:K15437
note: Protein that binds tRNA and methionyl- and glutamyl-tRNA synthetases; involved in tRNA delivery, stimulating catalysis, and ensuring localization; also binds quadruplex nucleic acids; protein abundance increases in response to DNA replication stress; methionyl-tRNA synthetase is Mes1p; glutamyl-tRNA synthetase is Gus1p; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11726524]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15710377]; GO_component: GO:0017102 - methionyl glutamyl tRNA synthetase complex [Evidence IMP,IPI] [PMID 9659920]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008047 - enzyme activator activity [Evidence IDA] [PMID 11069915]; GO_function: GO:0080025 - phosphatidylinositol-3,5-bisphosphate binding [Evidence IDA] [PMID 16343487]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 16343487]; GO_function: GO:0000049 - tRNA binding [Evidence IEA,IEA]; GO_function: GO:0000049 - tRNA binding [Evidence IMP,IPI] [PMID 11726524]; GO_process: GO:0051351 - positive regulation of ligase activity [Evidence IDA] [PMID 11069915]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IMP] [PMID 9659920]
codon start: 1
product: Arc1p
translation: MALCLGRTCLKHTFKTSASYSVKYSVFRVNTNQNIRLPDWPLKSSIRTYSTENQPKTPNPSVVQFKTAVVEKVDYHPNADSLYVSQVRVEGGPTSELLTVCSGLVKYVPKDELEGRRIVVVTNLKPSKLRGIKSEAMLLAAVGDDSAGNKKLELVSPPKQAALGETLFFDKYPISQSQQVPLKSIKSKVWQEVQKQLFVNVSHEVIFRDHELGDLVLRNDAGDPATVASLTNGTVS
SIO_010081: AWJ20_4805
subclass of: SO_0000673
so part of: AWJ20_4805
location: complement(604056..604766)
location: region:604056-604766:-1
so has part: feature:604056-604766:-1:exon

XP_018736331.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:604056-604766:-1:exon

AWJ20_4806
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4806
so part of: sequence
location: <605389..>608388
location: region:605389-608388:1
so has part: feature:605389-608388:1:exon
subclass of: SO_0000010

30036978
type: Gene
SIO_000068: ncbigene

position:605389:1
position: 605389
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:608388:1
position: 608388
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:605389-608388:1:exon

AWJ20_4806
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4806
product: hypothetical protein
transcript id: XM_018881900.1
SIO_010081: AWJ20_4806
subclass of: SO_0000673
so part of: AWJ20_4806
location: <605389..>608388
location: region:605389-608388:1
so has part: feature:605389-608388:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:605389-608388:1:exon

AWJ20_4806
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4806
codon start: 1
product: hypothetical protein
translation: MLGRLLSHAFTSPDGSSSPDGGRFSRASSPNFVSIGDGANDDEIHPTFPVSFLDEADTRNLLYGQSFTPAGILSLDVLKDIRVVVICDSSCVGGFIYDSAREVTASGSVNTNNSVSGGKTSITPHRGSLDHRTNSPSLVASTLSSVSALTRSFSSTALSSAAAINNLSGLGIGLGQTDSTTANPDGVTSGKGLGDSSPSNKPLARPNTIASPQISSGRVSAPNSPHRRKSSGNNLPTIAPDVAPILQLALLKDLVFGYSAMKFQGQLTKIHPLPRSKGSSSKKQPWIVSRIFKIAVDDPSLNRTDPVNRQSTTMRVDSAPKQFLTSTGSTISNASVDTNNTDLTVDDADNENDSATDGLPGWQPKSNSTVPPLPPHTKDVRCAICISFNLPPESEDAITNHWTELSYALADLQATIYRKLERQLPQVVLDSRRKKHTPIMSGGHGSGLNHDSRFSGGRVLYSIDGDLEIQNAVDFFKSRFSTALRIPRVLCGQDNWSDLYSEMCIAAKKWEGTSDGGFLGAMICCYIDFNKDLLGGLIHEDDDIPKRTIILANNRIVSRKLIFILSSLIRSRTSERIRKRISLANSLNDSFVKTHTQRSSSVSTTYSVGTNSPRTRTSAKFSFVDGGWEVSQPASMIEPVGTVAIPHVVRPSFSSSSLAHSVGYGSTSDALSSSINGRNSRNSGGFFSNLWNSDNSYPETPGTPYDDYYFHEQLANADRDMASSFQSKNFTIGDTTNGTVTPSLIRPSMSRCHSSERSATTLNTINHRLYHRQHTGESNISANNPHTSLHQRTLLQNASDNDLTNLSYLPTAPPYRLVHDEENQIVIDVSESATPDQPYEDLRPIVLPRVAGHVSNFHPDFILQACPITRDLEDQISRTMLRDGDVNSVSIAARNSISSVPSKRQALSKSLIINLRTREISTYTLVASTDETSNMTQKLVRKVVFANHKPSPGFSTAFANISKQIADIVEGEEGTIHSPNRGAYFTSLVKAFEGCFGLL
SIO_010081: AWJ20_4806
subclass of: SO_0000673
so part of: AWJ20_4806
location: 605389..608388
location: region:605389-608388:1
so has part: feature:605389-608388:1:exon

XP_018736332.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:605389-608388:1:exon

AWJ20_4807
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TFB4
locus tag: AWJ20_4807
so part of: sequence
location: complement(<608637..>609689)
location: region:608637-609689:-1
so has part: feature:608637-609689:-1:exon
subclass of: SO_0000010

30036979
type: Gene
SIO_000068: ncbigene

position:608637:-1
position: 608637
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:609689:-1
position: 609689
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:608637-609689:-1:exon

AWJ20_4807
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TFB4
locus tag: AWJ20_4807
product: TFIIH/NER complex subunit TFB4
transcript id: XM_018881901.1
SIO_010081: AWJ20_4807
subclass of: SO_0000673
so part of: AWJ20_4807
location: complement(<608637..>609689)
location: region:608637-609689:-1
so has part: feature:608637-609689:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:608637-609689:-1:exon

AWJ20_4807
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TFB4
locus tag: AWJ20_4807
inference: similar to AA sequence:KEGG_Orthology:K03143
note: Subunit of TFIIH complex; involved in transcription initiation, similar to 34 kDa subunit of human TFIIH; interacts with Ssl1p; GO_component: GO:0000439 - core TFIIH complex [Evidence IEA]; GO_component: GO:0000439 - core TFIIH complex [Evidence IDA] [PMID 14500720]; GO_component: GO:0000439 - core TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0005675 - holo TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0000112 - nucleotide-excision repair factor 3 complex [Evidence IPI] [PMID 10681587]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0000990 - core RNA polymerase binding transcription factor activity [Evidence IC] [PMID 19818408]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IMP] [PMID 10506223]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19450536]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19679665]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 19818408]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]
codon start: 1
product: TFIIH/NER complex subunit TFB4
translation: MNAVDDTHASLGGSERTGSDEHPTLLGIVLDTNPTAWAELENKLSLKEAVESLLIFINAHLSLNNANRVAVIAAHTTGAKFLYPKPPSSSFENGSQSGHTSLKAMSGTTGTANIFDRQTMYRQFREVDEAVVGELDRLVSSATEKSVRSTQSAVSGALSLALTYINRVNSNEDEVKTHARILLVSVSGDLSSQYIPTMNCIFAAQKKRIPIDVCKLAGDTVFLQQASDSTNGTYMKLDHPRGLVQYLLSAFLVDPAILPHVNLSTQRDVDFRAACFVTKTVVDIGCVCSVCLCIMSKVPADGSCPMCGTVYDPQALQKINRKPMVIVKKKPKKKKAKLDSTPVGTPSPIP
SIO_010081: AWJ20_4807
subclass of: SO_0000673
so part of: AWJ20_4807
location: complement(608637..609689)
location: region:608637-609689:-1
so has part: feature:608637-609689:-1:exon

XP_018736333.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:608637-609689:-1:exon

AWJ20_4808
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MRPL37
locus tag: AWJ20_4808
so part of: sequence
location: complement(<610680..>611036)
location: region:610680-611036:-1
so has part: feature:610680-611036:-1:exon
subclass of: SO_0000010

30036980
type: Gene
SIO_000068: ncbigene

position:610680:-1
position: 610680
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:611036:-1
position: 611036
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:610680-611036:-1:exon

AWJ20_4808
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MRPL37
locus tag: AWJ20_4808
product: mitochondrial 54S ribosomal protein YmL37
transcript id: XM_018881902.1
SIO_010081: AWJ20_4808
subclass of: SO_0000673
so part of: AWJ20_4808
location: complement(<610680..>611036)
location: region:610680-611036:-1
so has part: feature:610680-611036:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:610680-611036:-1:exon

AWJ20_4808
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MRPL37
locus tag: AWJ20_4808
inference: similar to AA sequence:KEGG_Orthology:K17435
note: Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 2060626]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 2060626]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 2060626]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]
codon start: 1
product: mitochondrial 54S ribosomal protein YmL37
translation: MLRLITRQVLRTTVPRTSFVRLASTSAPNTETTSSTKKTITSIAPAGTKLKGLNIKKGGEDPIALAENEYPEWLWELLDPAAQKAKLESDAGRQARKERRSANRQKIKMNNFLAGMKN
SIO_010081: AWJ20_4808
subclass of: SO_0000673
so part of: AWJ20_4808
location: complement(610680..611036)
location: region:610680-611036:-1
so has part: feature:610680-611036:-1:exon

XP_018736334.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:610680-611036:-1:exon

AWJ20_4809
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: LAS21
locus tag: AWJ20_4809
so part of: sequence
location: <614858..>617515
location: region:614858-617515:1
so has part: feature:614858-617515:1:exon
subclass of: SO_0000010

30036981
type: Gene
SIO_000068: ncbigene

position:614858:1
position: 614858
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:617515:1
position: 617515
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:614858-617515:1:exon

AWJ20_4809
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: LAS21
locus tag: AWJ20_4809
product: Las21p
transcript id: XM_018881903.1
SIO_010081: AWJ20_4809
subclass of: SO_0000673
so part of: AWJ20_4809
location: <614858..>617515
location: region:614858-617515:1
so has part: feature:614858-617515:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:614858-617515:1:exon

AWJ20_4809
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: LAS21
locus tag: AWJ20_4809
inference: similar to AA sequence:KEGG_Orthology:K05310
note: Integral plasma membrane protein; involved in the synthesis of the glycosylphosphatidylinositol (GPI) core structure; mutations affect cell wall integrity; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 10329735]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 10329735]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0051377 - mannose-ethanolamine phosphotransferase activity [Evidence IMP] [PMID 15452134]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IMP] [PMID 10329735]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IMP] [PMID 10329735]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IMP] [PMID 15452134]; GO_process: GO:0008152 - metabolic process [Evidence IEA]
codon start: 1
product: Las21p
translation: MNTSVRKWILIGVILCLQLGGFGLFARGFFPKKLVLPGEGVFFSDENGMLSVDELEPRFDKLILVVIDALRSDFIFSSGRSAMSEVHRLIRDGAGFPFTAHSTPPTVTLPRIKGLTTGSTPNFLDAILNIAESDTSSTLANQDSWVNQIQKQGKRLHMFGDDTWIKLFPRAFEKFDGTASFFVSDYTEVDNNVTRHIDYELGPGRESWDTLILHYLGLDHIGHKGGPDSVFMPEKQREMDHIIHKLYENMEENTLLVVTGDHGMNEAGNHGGSSSGETSAGMVFLSPKFVQIKNSSQEGNNGHKAPLDNPTEGEFTYYSRIQQTDLVPTLASLLKFPIPRNSLGVVIPDILELWENGEKAIILEQNVKQFVHVMASTYPGFDKIDVDIEMKCQAAQDSVELGEVDELRCLWWRLKSGGREIYGDKDLVFEFLYGCQDLLSKAASNYVERDLQFGLGLVILSAIVAISAVFLLKFSANLKIVLIIIAGVFSASMFGSSLVEEEHHFWYWGATGWLSWLYITSSRRKFRDGGNWIACLMLIRIIRGWNQTGQKYAGGPDTAKWLGQDSLGDNMGMESGAGQVLWGLVLVQYASLLGKLWLGGFSDVSSLAGFVFSFCIAMSSLVFKINMAIQSGEFVPKYLQFIVVSADDSEGLINLARLSFFTIGLASLYELSKLILAPRDNRVAVSSSLTNLSYIFEAFLVTQTRTVNIPLFIFFHLLRTYLARAYLINHRSSRDIVIIITIFTLILQHVSFFAMGNSNSLASIDLSNAYNGISSYQIVLVGVLTFVNNWVGPLYWTVAGLTMLIDSGIIPQTTTKAQIISNKILISQMFFSIATAGILGACYVLKHHLFIWTVFSPKLLYSAAWLILQHGLIDIMASTALAYLF
SIO_010081: AWJ20_4809
subclass of: SO_0000673
so part of: AWJ20_4809
location: 614858..617515
location: region:614858-617515:1
so has part: feature:614858-617515:1:exon

XP_018736335.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:614858-617515:1:exon

AWJ20_4810
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TAF5
locus tag: AWJ20_4810
so part of: sequence
location: <619169..>620080
location: region:619169-620080:1
so has part: feature:619169-620080:1:exon
subclass of: SO_0000010

30036983
type: Gene
SIO_000068: ncbigene

position:619169:1
position: 619169
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:620080:1
position: 620080
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:619169-620080:1:exon

AWJ20_4810
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TAF5
locus tag: AWJ20_4810
product: Taf5p
transcript id: XM_018881905.1
SIO_010081: AWJ20_4810
subclass of: SO_0000673
so part of: AWJ20_4810
location: <619169..>620080
location: region:619169-620080:1
so has part: feature:619169-620080:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:619169-620080:1:exon

AWJ20_4810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TAF5
locus tag: AWJ20_4810
inference: similar to AA sequence:KEGG_Orthology:K13124
note: Subunit (90 kDa) of TFIID and SAGA complexes; involved in RNA polymerase II transcription initiation and in chromatin modification; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9674426]; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IDA] [PMID 12446794]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC] [PMID 15448131]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 12600943]; GO_function: GO:0032947 - protein complex scaffold [Evidence IMP] [PMID 11585915]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 21070969]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IC] [PMID 10788514]; GO_process: GO:0016568 - chromatin modification [Evidence IDA] [PMID 9674426]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 9674426]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12138208]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15448131]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]
codon start: 1
product: Taf5p
translation: MSVKLKIPHAHTGAIHALSYNSNGSYVLSGGQDRKVVLWNANSGVKVQVYQFHAYEILDINVTFDDTRFVSCGGDRTAYVCDVSSGKTTNRFTGHIARINSACFNFDSSVVATASYDKTVKMWDCRSSSHSPIQTLTDASDSVSSVVIDRAQVFTGSVDGKVRIYDIRKGKLSTMTIGYPVTSVKPNVDGDTVLVSSLDSRIRLMDVADGNLLKTYKGHVNMLYRIKSAFVKNESEVVTCSEDGKIYFWDIESGEIERTLTQTSQLNSNSTMSSTSYSLAIHPTTNEISTSSLDGSIQLWNKF
SIO_010081: AWJ20_4810
subclass of: SO_0000673
so part of: AWJ20_4810
location: 619169..620080
location: region:619169-620080:1
so has part: feature:619169-620080:1:exon

XP_018736336.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:619169-620080:1:exon

AWJ20_4811
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MRP20
locus tag: AWJ20_4811
so part of: sequence
location: <620369..>621115
location: region:620369-621115:1
so has part: feature:620369-621115:1:exon
subclass of: SO_0000010

30036984
type: Gene
SIO_000068: ncbigene

position:620369:1
position: 620369
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:621115:1
position: 621115
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:620369-621115:1:exon

AWJ20_4811
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MRP20
locus tag: AWJ20_4811
product: mitochondrial 54S ribosomal protein YmL41
transcript id: XM_018881906.1
SIO_010081: AWJ20_4811
subclass of: SO_0000673
so part of: AWJ20_4811
location: <620369..>621115
location: region:620369-621115:1
so has part: feature:620369-621115:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:620369-621115:1:exon

AWJ20_4811
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MRP20
locus tag: AWJ20_4811
inference: similar to AA sequence:KEGG_Orthology:K02892
note: Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 1544898]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 1544898]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 1544898]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; GO_process: GO:0006412 - translation [Evidence IEA]
codon start: 1
product: mitochondrial 54S ribosomal protein YmL41
translation: MPRRIPKSIKRSSRAKPPTPYIPKQVKFPLSKKAQAKPTPKGPSYSERIFNKLQESIEGDGPHFPVGGREVYFPHAKVVLVRPSAKHTPYQAKFVVPRYFNKLDLRDYLYHVYGLKALNITTQLLWARWKRDAPGKPRYRTPQVKKMTIEMADPFVWPKPTTLQEIRKHYNVNFIKELHKYGEDANRFGSDKLKPPRAFGGIAGPYVPPASPFLPKQITRQMLKKKKVAEVQALRQKDVDMVKNFLRL
SIO_010081: AWJ20_4811
subclass of: SO_0000673
so part of: AWJ20_4811
location: 620369..621115
location: region:620369-621115:1
so has part: feature:620369-621115:1:exon

XP_018736337.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:620369-621115:1:exon

AWJ20_4812
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4812
so part of: sequence
location: complement(<621264..>625349)
location: region:621264-625349:-1
so has part: feature:621264-625349:-1:exon
subclass of: SO_0000010

30036985
type: Gene
SIO_000068: ncbigene

position:621264:-1
position: 621264
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:625349:-1
position: 625349
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:621264-625349:-1:exon

AWJ20_4812
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4812
product: hypothetical protein
transcript id: XM_018881907.1
SIO_010081: AWJ20_4812
subclass of: SO_0000673
so part of: AWJ20_4812
location: complement(join(<621264..624717,625288..>625349))
location: region:621264-625349:-1
so has part: feature:625288-625349:-1:exon
so has part: feature:621264-624717:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:625288-625349:-1:exon

position:625288:-1
position: 625288
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:621264-624717:-1:exon

position:624717:-1
position: 624717
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

AWJ20_4812
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4812
codon start: 1
product: hypothetical protein
translation: MASLRFSAESNEELIVTAPRCSLRSVSKSIEALLSSKASATGSGSGAGDGAGTGSTDVGTGSSTSYSLDTETAENIQLYIEKHPPDPAEATRLHDELVRIHKAYVLPESHPDSELYFVRCLIDFVPCLINTDSIEEWFGRYSGPAIDSAGHRNALVKLSREFLLALLLVSTNNNMGSLSDQDNESASKIKSIYLANSRKVAQMILAQYLKGDDGDYSFTSNVDNMLKGKEGMKSEERRRFAKSNAQNILIQYGMKAPVEFLTVVSDRFGESKLRIQLLALLSSYVSQQPPYLFQIRSTPLLDNLYQCLIRDKSSFGLSICATVVAMILPHICDIVVDQLPKLFAIYGRLCSWQLELGSEEDDADAASDEDDEKHSKDETCTTNSSDNWQVLNNLIDIQDARGPIITPLFTFLYGLFPVNLICFIRQPNEYLSESGYKRPFDDFWDKHYIQELSRPCLELHTLNPSMISMTREQELTDKTRWQFMGSAYDIASLCLSLYNPRQDFNKRPSHQVVSISSTSSRPQFRLPFEEVNNLIDPESQQNADGEIISASNLTSDYDTPELVNPAVKRLSVVNVPPSILSRTSSSFDPTATGGPIREDSLTSPSTATNGRNSFLSPGLPSVEALLSDHEKLYSRREILPTLEKRDSMSAIPDELRLDDVVSPTDPGPSTANNSVHNLSVDVNNNKPGTNNNNSTNSSLNTLRRGRSGTISSPAFIPTSQNTTSSAIHSPLLLSQPNQVAAAAASSIAAASANVSAPGTGTTSSPNIPISSPTTGPQSAAIVSHEQLEKQFNLTIAFYQRELLLIQNELEFVSFVEHQTQHRFSELRQKLKDSILANAQVDKLITQNKALKAALEKPELEAAKYQKSLKTYKSERQAYEGSLVQRNKDFRTQINNLNQQLEQVKSELEQITTEKKALLESVKSQEITISKMELDLTAAKERTVLFDSLQKAFEELKQKVEVLERQQENTDKSNPQVDVVQGQLEQLRLAYHGLEADKDKIVTAYDKRIEELEKLVADYETRMNRNNGPPSRESSDISQFIESFKKASEVRYNQLNTAYNELVDRFEDLSVRFREVLLNDEEHKARIDQPVLPKRSLLGYEMVRAEEENVSESNGVTKNIAAQPPQHPHPLVRNTTETRIRGRGGVQNTSNAPVPNSPGSTQSKRRPFRGYG
SIO_010081: AWJ20_4812
subclass of: SO_0000673
so part of: AWJ20_4812
location: complement(join(621264..624717,625288..625349))
location: region:621264-625349:-1
so has part: feature:625288-625349:-1:exon
so has part: feature:621264-624717:-1:exon

XP_018736338.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:625288-625349:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:621264-624717:-1:exon

AWJ20_4813
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4813
so part of: sequence
location: <625102..>626079
location: region:625102-626079:1
so has part: feature:625102-626079:1:exon
subclass of: SO_0000010

30036986
type: Gene
SIO_000068: ncbigene

position:625102:1
position: 625102
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:626079:1
position: 626079
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:625102-626079:1:exon

AWJ20_4813
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4813
product: hypothetical protein
transcript id: XM_018881908.1
SIO_010081: AWJ20_4813
subclass of: SO_0000673
so part of: AWJ20_4813
location: <625102..>626079
location: region:625102-626079:1
so has part: feature:625102-626079:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:625102-626079:1:exon

AWJ20_4813
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4813
codon start: 1
product: hypothetical protein
translation: MSYSNLDLINQVDSVPYTPQPVDAYYEFRSHDSKAVLGYILPEVAKKLNYPDTFTVTGPTANQRGAVTINSSLDSAEKRSEAIAKVLEDLKENKTFQVLQGWRNELYTVYNPTHVPYFLIERAGSGLFGIVTYGVHLVGYQPATETSPLKIWVPRRSYTKATYPGMLDNTIAGGIGYPCGVHETAIKEAYEEAGLDEEFMEKNLRPAGVVTYFHQVNNHFFDSEASSRSTTTKDEATYQPEVEFIYDVIMAGDVKPRPVDGEVAEFYLMDVETVKQELAKGSFKYNCALVMIDFFIRHGILTYENEPDFVNIAQRCHRVLEFPMK
SIO_010081: AWJ20_4813
subclass of: SO_0000673
so part of: AWJ20_4813
location: 625102..626079
location: region:625102-626079:1
so has part: feature:625102-626079:1:exon

XP_018736339.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:625102-626079:1:exon

AWJ20_4814
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: KTR4
locus tag: AWJ20_4814
so part of: sequence
location: <627019..>628272
location: region:627019-628272:1
so has part: feature:627019-628272:1:exon
subclass of: SO_0000010

30036987
type: Gene
SIO_000068: ncbigene

position:627019:1
position: 627019
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:628272:1
position: 628272
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:627019-628272:1:exon

AWJ20_4814
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: KTR4
locus tag: AWJ20_4814
product: Ktr4p
transcript id: XM_018881909.1
SIO_010081: AWJ20_4814
subclass of: SO_0000673
so part of: AWJ20_4814
location: <627019..>628272
location: region:627019-628272:1
so has part: feature:627019-628272:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:627019-628272:1:exon

AWJ20_4814
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: KTR4
locus tag: AWJ20_4814
inference: similar to AA sequence:KEGG_Orthology:K03854
note: Putative mannosyltransferase involved in protein glycosylation; member of the KRE2/MNT1 mannosyltransferase family of type II membrane proteins with a short cytoplasmic N-terminus, a membrane-spanning region and a highly conserved catalytic lumenal domain; GO_component: GO:0005794 - Golgi apparatus [Evidence ISS] [PMID 7975899]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence IEA]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence ISS] [PMID 7975899]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0097502 - mannosylation [Evidence IEA]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence ISS] [PMID 7975899]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]
codon start: 1
product: Ktr4p
translation: MLVRYLRRPIAIIGLFSVVVLLAMSSYLFDLDLTPYYDRKAYGQKVAQGDFIPDKQVDLSKGYSAEDPSRNEDAKNPLFDEKLEPDGGLSRLTETDKRVPATLMSLVRNKEADDLMATIVQIESAFNNKFNYPWTFFNDEEFTEDFKTSALAATGGNCTFVKIEPEDWMEPSWIDVDKARELGIKMKNKDDVQYADLPSYHRMCRWNSGRFFMNPALDNYDYYWRVEPKTDFYCDIDYDIFAYMKENDKVYGFVINLYDSPQSIRTLWPTTKEFFEQNPEYLHPNNALQWVVNTGREGHTKKANGYSTCHFWSNFEIGSLEFFRSKPYQDYFDFLDKNGGFFYERWGDAPVHSLGLAMMADKSKIHYFKDIGYQHFPYFNCPASPKCKGCDAGKFTGIDSLNTESCMSEWFKAAGTG
SIO_010081: AWJ20_4814
subclass of: SO_0000673
so part of: AWJ20_4814
location: 627019..628272
location: region:627019-628272:1
so has part: feature:627019-628272:1:exon

XP_018736340.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:627019-628272:1:exon

AWJ20_4815
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: AIP1
locus tag: AWJ20_4815
so part of: sequence
location: complement(<628441..>629946)
location: region:628441-629946:-1
so has part: feature:628441-629946:-1:exon
subclass of: SO_0000010

30036988
type: Gene
SIO_000068: ncbigene

position:628441:-1
position: 628441
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:629946:-1
position: 629946
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:628441-629946:-1:exon

AWJ20_4815
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: AIP1
locus tag: AWJ20_4815
product: Aip1p
transcript id: XM_018881910.1
SIO_010081: AWJ20_4815
subclass of: SO_0000673
so part of: AWJ20_4815
location: complement(<628441..>629946)
location: region:628441-629946:-1
so has part: feature:628441-629946:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:628441-629946:-1:exon

AWJ20_4815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: AIP1
locus tag: AWJ20_4815
note: Actin cortical patch component; interacts with the actin depolymerizing factor cofilin; inhibits elongation of aged ADP-actin filaments decorated with cofilin to maintain a high level of assembly-competent actin species; required to restrict cofilin localization to cortical patches; contains WD repeats; protein increases in abundance and relocalizes from cytoplasm to plasma membrane upon DNA replication stress; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 10366597]; GO_component: GO:0005884 - actin filament [Evidence IDA] [PMID 23333351]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0003779 - actin binding [Evidence IPI] [PMID 7719850]; GO_process: GO:0030042 - actin filament depolymerization [Evidence IGI,IPI] [PMID 10366597]; GO_process: GO:0051016 - barbed-end actin filament capping [Evidence IMP] [PMID 23333351]; GO_process: GO:0006970 - response to osmotic stress [Evidence TAS] [PMID 10652251]
codon start: 1
product: Aip1p
translation: MVAKGEYQVIQGRINDLAWDADSQRIIAVGDGKEKYGHCFTADSGNTVGSIAGHSAVVNAVSIRPVRPYRAVTVGDDARLVFYQGPPFQFSLSHQDKHTNFVQDAQFSPNGEFIVSVGSDRKIALYEGKTGEFLSFVEDESNGHKGSIFSVAWSPDSSKFATASADQTVKLWSVADKKVLKTWSFPAGLENHQVGVVFAGEYIISLSYSGDLNYLQESSDKPVKTVTGHQKTITSLASSGPSKPLVSGSYDGKIVHWDASDITASSSVHSHDGPVVGIVSDGEHLWSVGWDDTLKRVGSDSSVSLFGQPKAVASGSDGIIAVVGESYIQVFDNGKQLAFNTSLEFPAQAVSVSKSLVAVGSSDNSIHLFNRDLSVSNSVKLAPLRSAVTYLAFSPDGEYLAAGDASGKITLYSIPDQSVVTGRWAFHTSRVTSIHWHPSGSHVVAGSADTNIIIYSVANPGKNIKYLGAHKDGINSVLWTSDSTFASAGNDATVKRWRVTL
SIO_010081: AWJ20_4815
subclass of: SO_0000673
so part of: AWJ20_4815
location: complement(628441..629946)
location: region:628441-629946:-1
so has part: feature:628441-629946:-1:exon

XP_018736341.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:628441-629946:-1:exon

AWJ20_4816
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: DAL5
locus tag: AWJ20_4816
so part of: sequence
location: complement(<634464..>634883)
location: region:634464-634883:-1
so has part: feature:634464-634883:-1:exon
subclass of: SO_0000010

30036989
type: Gene
SIO_000068: ncbigene

position:634464:-1
position: 634464
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:634883:-1
position: 634883
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:634464-634883:-1:exon

AWJ20_4816
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: DAL5
locus tag: AWJ20_4816
product: allantoate permease
transcript id: XM_018881911.1
SIO_010081: AWJ20_4816
subclass of: SO_0000673
so part of: AWJ20_4816
location: complement(<634464..>634883)
location: region:634464-634883:-1
so has part: feature:634464-634883:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:634464-634883:-1:exon

AWJ20_4816
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: DAL5
locus tag: AWJ20_4816
note: Allantoate permease; ureidosuccinate permease; also transports dipeptides, though with lower affinity than for allantoate and ureidosuccinate; expression is constitutive but sensitive to nitrogen catabolite repression; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IMP,ISS] [PMID 3275614]; GO_function: GO:0015124 - allantoate transmembrane transporter activity [Evidence IMP,ISS] [PMID 3275614]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IMP] [PMID 16429164]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IGI,IMP] [PMID 17693598]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015719 - allantoate transport [Evidence IMP] [PMID 3275614]; GO_process: GO:0042938 - dipeptide transport [Evidence IMP] [PMID 16429164]; GO_process: GO:0042938 - dipeptide transport [Evidence IGI,IMP] [PMID 17693598]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0042939 - tripeptide transport [Evidence IMP] [PMID 16429164]
codon start: 1
product: allantoate permease
translation: MSASFLAFSSNHSVQLAGYCLFSMSPLCFICYLSTISSNTAGHTKKVIFSATTLVGYCVGNLIGPQTFIASESPTYKTAKTTIVACYGVSLILIAATYYINRRANRIRDEKNEKLPDDFVNSEFADLTDFQNPEFRYAL
SIO_010081: AWJ20_4816
subclass of: SO_0000673
so part of: AWJ20_4816
location: complement(634464..634883)
location: region:634464-634883:-1
so has part: feature:634464-634883:-1:exon

XP_018736342.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:634464-634883:-1:exon

AWJ20_4817
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: DAL5
locus tag: AWJ20_4817
so part of: sequence
location: complement(<634933..>636057)
location: region:634933-636057:-1
so has part: feature:634933-636057:-1:exon
subclass of: SO_0000010

30036990
type: Gene
SIO_000068: ncbigene

position:634933:-1
position: 634933
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:636057:-1
position: 636057
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:634933-636057:-1:exon

AWJ20_4817
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: DAL5
locus tag: AWJ20_4817
product: allantoate permease
transcript id: XM_018881912.1
SIO_010081: AWJ20_4817
subclass of: SO_0000673
so part of: AWJ20_4817
location: complement(<634933..>636057)
location: region:634933-636057:-1
so has part: feature:634933-636057:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:634933-636057:-1:exon

AWJ20_4817
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: DAL5
locus tag: AWJ20_4817
note: Allantoate permease; ureidosuccinate permease; also transports dipeptides, though with lower affinity than for allantoate and ureidosuccinate; expression is constitutive but sensitive to nitrogen catabolite repression; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IMP,ISS] [PMID 3275614]; GO_function: GO:0015124 - allantoate transmembrane transporter activity [Evidence IMP,ISS] [PMID 3275614]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IMP] [PMID 16429164]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IGI,IMP] [PMID 17693598]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015719 - allantoate transport [Evidence IMP] [PMID 3275614]; GO_process: GO:0042938 - dipeptide transport [Evidence IMP] [PMID 16429164]; GO_process: GO:0042938 - dipeptide transport [Evidence IGI,IMP] [PMID 17693598]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0042939 - tripeptide transport [Evidence IMP] [PMID 16429164]
codon start: 1
product: allantoate permease
translation: MITEHKANVSKDLGVVEKNVEVEIAEVKDVNLKGADLAMEVAFQSYGMEIDEATNKRILRKIDMYVCTLMCVVYSIQFLDKVTNSFAAIMGLIPDLHMTGSEYSWIGSAFYLGYLVLEFPAAYLLQRFPIAKTVGIFVILWGFVLCMTSLPTTFGGFLTTRIFLGMLESAVTPAFVLITSQWYKSSEQFTRTAFWVGCNGIGGMIGAAIAYGLAKRQMAGDLPIVAWRLLFIIVGVVTIALGIAFILIIPDTPSKAWFLNEEEKLLVVERIRSNKQGFGNRKIKMDQVKEAFCDVRLYLNFFVMVLINIPNGGLTNFGSKYHKKKDNQITRFVLTFYRYCADRHGIRHFGCSSDEPSTRSSRGCRTVVVRSFRC
SIO_010081: AWJ20_4817
subclass of: SO_0000673
so part of: AWJ20_4817
location: complement(634933..636057)
location: region:634933-636057:-1
so has part: feature:634933-636057:-1:exon

XP_018736343.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:634933-636057:-1:exon

AWJ20_4818
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: DAL5
locus tag: AWJ20_4818
so part of: sequence
location: complement(<637482..>638501)
location: region:637482-638501:-1
so has part: feature:637482-638501:-1:exon
subclass of: SO_0000010

30036991
type: Gene
SIO_000068: ncbigene

position:637482:-1
position: 637482
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:638501:-1
position: 638501
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:637482-638501:-1:exon

AWJ20_4818
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: DAL5
locus tag: AWJ20_4818
product: allantoate permease
transcript id: XM_018881913.1
SIO_010081: AWJ20_4818
subclass of: SO_0000673
so part of: AWJ20_4818
location: complement(<637482..>638501)
location: region:637482-638501:-1
so has part: feature:637482-638501:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:637482-638501:-1:exon

AWJ20_4818
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: DAL5
locus tag: AWJ20_4818
inference: similar to AA sequence:KEGG_Orthology:K08192
note: Allantoate permease; ureidosuccinate permease; also transports dipeptides, though with lower affinity than for allantoate and ureidosuccinate; expression is constitutive but sensitive to nitrogen catabolite repression; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IMP,ISS] [PMID 3275614]; GO_function: GO:0015124 - allantoate transmembrane transporter activity [Evidence IMP,ISS] [PMID 3275614]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IMP] [PMID 16429164]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IGI,IMP] [PMID 17693598]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015719 - allantoate transport [Evidence IMP] [PMID 3275614]; GO_process: GO:0042938 - dipeptide transport [Evidence IMP] [PMID 16429164]; GO_process: GO:0042938 - dipeptide transport [Evidence IGI,IMP] [PMID 17693598]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0042939 - tripeptide transport [Evidence IMP] [PMID 16429164]
codon start: 1
product: allantoate permease
translation: MTIQENETAMGPKDLGIVEKNAMVEVAEVKDLNLKTADLAMEVAFQSYGMEIDEATNRKILRKIDLYVCSLMCIVYAVQYLDKVTNSFASIMGLRTDLNITGSQYSWIGSVFYIAYLVFEFPASYSLQRFPIAKTVGAFVIAWGFVLCMTALPTNYGGFLTTRIFLGMLESAVTPAFVLLTSQWYKSEEQFTRTSFWVGCNGLGSIIGSLTAYGLAKRQEAGTLPISGWRLLFVIVGVVTIALGIIFILVIPDVPAKAWFLTEEEKLLVVERIRSNKQGFGNRKFKMDQVKEAFTDVRLYLNFLVMVLIDIPNGGMTNFQSKFCLYFKHFKTKSEKKKD
SIO_010081: AWJ20_4818
subclass of: SO_0000673
so part of: AWJ20_4818
location: complement(637482..638501)
location: region:637482-638501:-1
so has part: feature:637482-638501:-1:exon

XP_018736344.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:637482-638501:-1:exon

AWJ20_4819
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: UTP15
locus tag: AWJ20_4819
so part of: sequence
location: <641504..>642994
location: region:641504-642994:1
so has part: feature:641504-642994:1:exon
subclass of: SO_0000010

30036992
type: Gene
SIO_000068: ncbigene

position:641504:1
position: 641504
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:642994:1
position: 642994
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:641504-642994:1:exon

AWJ20_4819
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: UTP15
locus tag: AWJ20_4819
product: Utp15p
transcript id: XM_018881914.1
SIO_010081: AWJ20_4819
subclass of: SO_0000673
so part of: AWJ20_4819
location: <641504..>642994
location: region:641504-642994:1
so has part: feature:641504-642994:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:641504-642994:1:exon

AWJ20_4819
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: UTP15
locus tag: AWJ20_4819
inference: similar to AA sequence:KEGG_Orthology:K14549
note: Nucleolar protein; component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0033553 - rDNA heterochromatin [Evidence IDA] [PMID 15489292]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_component: GO:0034455 - t-UTP complex [Evidence IDA] [PMID 17515605]; GO_function: GO:0030515 - snoRNA binding [Evidence IPI] [PMID 12068309]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12068309]; GO_process: GO:0045943 - positive regulation of transcription from RNA polymerase I promoter [Evidence IMP] [PMID 15489292]; GO_process: GO:0006364 - rRNA processing [Evidence IEA,IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]
codon start: 1
product: Utp15p
translation: MSTQAVRIQPVRNPVLPAKTTPELRYWRGFKNPLLVKENNAVNHLHFNPQSPHDFAVTSSTRVQIFSAKTRQVVRTIARFKDTVYSGEFRSDGKLLVAGDATGLIQVFDANSRSVLVTLLPTQHSTQVTKFHPTELSTLLSASDDRVVRLWDLTSPNPVASYGDHTDYVRTACFIPQSSLIATGCYDGLVRIYDRRISAEEGPVATHDQGAPVESVLALNSTTFLSAGDPTVKVWDLAASKKVKELGNFQKTVTCLADAGERGVLAGSLDGHVKVLDSSSPDWSVKFGWKFGGAVLNTGVSPDHKHFVTGLTSGLLSIRTRKTEPKVAQGVKTAKVGNFARMVRGAEYHGELEHRVLDTKSAPSRKLKAYERHLKAFRWSDALDSAFSNDMAPELTTTVLEELKRRGKVIVSLSGRDEDSLEPILKWSVKAVQDTRSIPIVADWVGCIVDMYANLIDRSPVLENLVLQLRKRVALEVERAKEAKRIDGMLELLLSR
SIO_010081: AWJ20_4819
subclass of: SO_0000673
so part of: AWJ20_4819
location: 641504..642994
location: region:641504-642994:1
so has part: feature:641504-642994:1:exon

XP_018736345.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:641504-642994:1:exon

AWJ20_4820
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4820
so part of: sequence
location: complement(<643490..>644761)
location: region:643490-644761:-1
so has part: feature:643490-644761:-1:exon
subclass of: SO_0000010

30036994
type: Gene
SIO_000068: ncbigene

position:643490:-1
position: 643490
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:644761:-1
position: 644761
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:643490-644761:-1:exon

AWJ20_4820
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4820
product: hypothetical protein
transcript id: XM_018881916.1
SIO_010081: AWJ20_4820
subclass of: SO_0000673
so part of: AWJ20_4820
location: complement(<643490..>644761)
location: region:643490-644761:-1
so has part: feature:643490-644761:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:643490-644761:-1:exon

AWJ20_4820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4820
codon start: 1
product: hypothetical protein
translation: MGTGPSQSEIHKIKLEIKKWEYSFQETHGRKPGYDDIRAIPDIHIKYKTYNRYKSGTSRASKNVDDNDQAAVRKLDKPLKSLAQYDQSTDGVTADSTGYVLTPHGTRSYREDLSIEYISRSPSRRSAEYDEGFKGNAASHRTPSTPQKKKNAEMAAAILAAKIGPTPQMDGRVLGIFEFTSPDAILQTPSAKKQKYNPSFENALLNTPSKKRTKSVASANPISPPRSDSPVRAVDSNSHAEPDANLSHTILATPAKSKTSSPFNMETPSKTPTYLNHRISSMADSPIAPRRLGRTLSSMMAELRDIKKEQETGGFDPDDGFDINEIADLNEEDLYSDFNDSQDDTKPKDSTEPGPIYKKKGQKRTTKRVKMKPILNENDPIDESAKRARTLPKKQPENFQRLKLHNSGYKTNKSKFFFGRRSR
SIO_010081: AWJ20_4820
subclass of: SO_0000673
so part of: AWJ20_4820
location: complement(643490..644761)
location: region:643490-644761:-1
so has part: feature:643490-644761:-1:exon

XP_018736346.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:643490-644761:-1:exon

AWJ20_4821
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ATP25
locus tag: AWJ20_4821
so part of: sequence
location: <645086..>647341
location: region:645086-647341:1
so has part: feature:645086-647341:1:exon
subclass of: SO_0000010

30036995
type: Gene
SIO_000068: ncbigene

position:645086:1
position: 645086
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:647341:1
position: 647341
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:645086-647341:1:exon

AWJ20_4821
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ATP25
locus tag: AWJ20_4821
product: Atp25p
transcript id: XM_018881917.1
SIO_010081: AWJ20_4821
subclass of: SO_0000673
so part of: AWJ20_4821
location: <645086..>647341
location: region:645086-647341:1
so has part: feature:645086-647341:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:645086-647341:1:exon

AWJ20_4821
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ATP25
locus tag: AWJ20_4821
note: Mitochondrial protein required for the stability of Oli1p (Atp9p) mRNA; also required for the Oli1p ring formation; YMR098C is not an essential gene; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 18216280]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0048255 - mRNA stabilization [Evidence IEA]; GO_process: GO:0048255 - mRNA stabilization [Evidence IMP] [PMID 18216280]; GO_process: GO:0033615 - mitochondrial proton-transporting ATP synthase complex assembly [Evidence IMP] [PMID 18216280]
codon start: 1
product: Atp25p
translation: MASRRVIYTLLEPVTRPYFAPYRHNYNQRQQEKRRQALQRKWISTGVSDGVVELTEEEAALVASGHATNSAGSTSGSGTSTVIVSSSSSNQAGSISSSVSGDNEHSLLRTTSDDIPWYLRNTDTIKATESLQSREPLPDFPFASPRSLENMAKYMIEDLGLVDLQIIDLRHVQPASPFGPNDIMLLCSGKGSRHLTKASQSLIGYVKQNYNQLADTEGILSSNFLRVYNRRLRKRAQRQGTANREFMAGGDSTGTMVDRTGSWVVLDTKVDGIYIHIFTEERRSEVDLEGYWSQKSKGISELVDLPKSKFEKRFVLPGSRRGFATSIVASNVKATLAETVGSSSTASVAPTVKAAVADAHINNTPTAHTSKLSVDSTDSAVVEEPVPSESQNYLDELQKWSLAGDYKRCIRLKSFAPELTAEENQKSDTLILKAHLNYLAVNQKTIIFSEITPTCDIVSSFINAFPTEPMPLQWRLRLIFLQKLHTINEPAFPLNLLVEHITLQQASGVPIEPWDVEMVVATIAYSHQFTNKKVNNLSVAEWEAVCDNKLQLILQVHEVAFRSTGEVLSVSDSLVALLYRLCFSLSKEGKAKSIVPSEALADPTPSTGVPNSYIAGVTGKRAFVDPRATTMMGLFGGEGGAKMTKPIVILIMSVLINGGSWDKFWSFWTNINRYTIVDQDLLAVMVSLVTKTGDQANMIHLLEKYLPTLLTDLERTGVSILPETAEALKASVQYLDPARARYDFIRNFLGC
SIO_010081: AWJ20_4821
subclass of: SO_0000673
so part of: AWJ20_4821
location: 645086..647341
location: region:645086-647341:1
so has part: feature:645086-647341:1:exon

XP_018736347.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:645086-647341:1:exon

AWJ20_4822
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4822
so part of: sequence
location: <648028..>648597
location: region:648028-648597:1
so has part: feature:648028-648597:1:exon
subclass of: SO_0000010

30036996
type: Gene
SIO_000068: ncbigene

position:648028:1
position: 648028
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:648597:1
position: 648597
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:648028-648597:1:exon

AWJ20_4822
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4822
product: hypothetical protein
transcript id: XM_018881918.1
SIO_010081: AWJ20_4822
subclass of: SO_0000673
so part of: AWJ20_4822
location: <648028..>648597
location: region:648028-648597:1
so has part: feature:648028-648597:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:648028-648597:1:exon

AWJ20_4822
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4822
codon start: 1
product: hypothetical protein
translation: MDQYNKQAADFVFRANNADSGPDEIDLHGLYVKEAIQALDTRIRAGIQRHESHIKAIVGKGNHSANHVAKIKPAVEELCQTHGIRHEIDPHNSGVIILHLDGQSGPAVNTGNYPQQPPASHGGSASQYYGGNAPQQQPYAPQHQQYQQNYGQQQQQYQQQPQGQGQNNQNDMLFKIFCGVAKMLFRQCA
SIO_010081: AWJ20_4822
subclass of: SO_0000673
so part of: AWJ20_4822
location: 648028..648597
location: region:648028-648597:1
so has part: feature:648028-648597:1:exon

XP_018736348.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:648028-648597:1:exon

AWJ20_4823
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: KTI12
locus tag: AWJ20_4823
so part of: sequence
location: complement(<648892..>649743)
location: region:648892-649743:-1
so has part: feature:648892-649743:-1:exon
subclass of: SO_0000010

30036997
type: Gene
SIO_000068: ncbigene

position:648892:-1
position: 648892
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:649743:-1
position: 649743
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:648892-649743:-1:exon

AWJ20_4823
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: KTI12
locus tag: AWJ20_4823
product: Kti12p
transcript id: XM_018881919.1
SIO_010081: AWJ20_4823
subclass of: SO_0000673
so part of: AWJ20_4823
location: complement(<648892..>649743)
location: region:648892-649743:-1
so has part: feature:648892-649743:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:648892-649743:-1:exon

AWJ20_4823
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: KTI12
locus tag: AWJ20_4823
inference: similar to AA sequence:KEGG_Orthology:K15456
note: Protein that plays a role in modification of tRNA wobble nucleosides; protein plays role in tRNA wobble nucleoside modification with Elongator complex; involved in sensitivity to G1 arrest induced by zymocin; interacts with chromatin throughout the genome; also interacts with Cdc19p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12139626]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12139626]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 15772087]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0016049 - cell growth [Evidence IPI] [PMID 12139626]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 15772087]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]
codon start: 1
product: Kti12p
translation: MPLITVSGLPSSGKTTRALQLKAGLERKIAEVNSDLTVYLINDESLSISKETYRELHSEKATRGAQISAVKRHLGKNTIVIFDNLSYIKGFRYQLFCEAKALSTNACLVHVGAPKDMCVAWNKSRPEGEAWPEDLFDALVFRYEEPNPMSRWDSPLFPIAHEDTEADIPIDEIWDTLVLRKPKPPNAATVLKPVTAGNYLTELDKITTSVVNEIIDLHKTSPGGLVKLDAYDPVVQLPMRLTVASLNRIRRNFVTINKMKPIEVSRIRPHFIEFAIKNLSADM
SIO_010081: AWJ20_4823
subclass of: SO_0000673
so part of: AWJ20_4823
location: complement(648892..649743)
location: region:648892-649743:-1
so has part: feature:648892-649743:-1:exon

XP_018736349.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:648892-649743:-1:exon

AWJ20_4824
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MTG1
locus tag: AWJ20_4824
so part of: sequence
location: <650295..>651395
location: region:650295-651395:1
so has part: feature:650295-651395:1:exon
subclass of: SO_0000010

30036998
type: Gene
SIO_000068: ncbigene

position:650295:1
position: 650295
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:651395:1
position: 651395
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:650295-651395:1:exon

AWJ20_4824
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MTG1
locus tag: AWJ20_4824
product: putative GTPase MTG1
transcript id: XM_018881920.1
SIO_010081: AWJ20_4824
subclass of: SO_0000673
so part of: AWJ20_4824
location: <650295..>651395
location: region:650295-651395:1
so has part: feature:650295-651395:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:650295-651395:1:exon

AWJ20_4824
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MTG1
locus tag: AWJ20_4824
inference: similar to AA sequence:KEGG_Orthology:K06948
note: Putative GTPase peripheral to the mitochondrial inner membrane; essential for respiratory competence, likely functions in assembly of the large ribosomal subunit, has homologs in plants and animals; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 12808030]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence ISA] [PMID 12808030]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0032543 - mitochondrial translation [Evidence IGI,IMP] [PMID 12808030]
codon start: 1
product: putative GTPase MTG1
translation: MSTEVPSEPTKHKFVPRPSFPDYNIPLANFHGHHRKALQSMHQTALQVDLVLELRDSRAPLSSINLLFDKVLGHKNKLVLYTKNDLSGIKNATELYEAWHPHQKFLNIDCRSTADANKVLSAAKQLYDELEPKPPLGLRLLITGMPNAGKSTFLNTLRKVGTGERHKVASTGEMPGVTRSISETIRISRDPNIYIFDTPGVFVPQVKNSEDMLKMCLINAVKRSHVDPVVLADYLLYRINKQYPDGKPYLKYTGRPTNNIDFLLRSIVKRRLSRRNSATKDNNKAKASNNGDKSKGTKIVDFNENGEALDWIEKWTKGKGPKIVLDDVNEPDCYAKTIEEQQTRLSSFDLGPLKVKSFQKKRLMLR
SIO_010081: AWJ20_4824
subclass of: SO_0000673
so part of: AWJ20_4824
location: 650295..651395
location: region:650295-651395:1
so has part: feature:650295-651395:1:exon

XP_018736350.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:650295-651395:1:exon

AWJ20_4825
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: POM33
locus tag: AWJ20_4825
so part of: sequence
location: <654564..>654869
location: region:654564-654869:1
so has part: feature:654564-654869:1:exon
subclass of: SO_0000010

30036999
type: Gene
SIO_000068: ncbigene

position:654564:1
position: 654564
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:654869:1
position: 654869
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:654564-654869:1:exon

AWJ20_4825
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: POM33
locus tag: AWJ20_4825
product: nucleoporin POM33
transcript id: XM_018881921.1
SIO_010081: AWJ20_4825
subclass of: SO_0000673
so part of: AWJ20_4825
location: <654564..>654869
location: region:654564-654869:1
so has part: feature:654564-654869:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:654564-654869:1:exon

AWJ20_4825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: POM33
locus tag: AWJ20_4825
codon start: 1
product: nucleoporin POM33
translation: MAYAANFEFGLVFLLFFKFVTFRKGTTFPFLFYIVFIKARYDQSYYMKSAVKAWEVKIDSVFANPNIPAPLKQAWAQVKDVVKRITSAVTIGKPVAPKKHS
SIO_010081: AWJ20_4825
subclass of: SO_0000673
so part of: AWJ20_4825
location: 654564..654869
location: region:654564-654869:1
so has part: feature:654564-654869:1:exon

XP_018736351.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:654564-654869:1:exon

AWJ20_4826
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ADI1
locus tag: AWJ20_4826
so part of: sequence
location: <655610..>656128
location: region:655610-656128:1
so has part: feature:655610-656128:1:exon
subclass of: SO_0000010

30037000
type: Gene
SIO_000068: ncbigene

position:655610:1
position: 655610
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:656128:1
position: 656128
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:655610-656128:1:exon

AWJ20_4826
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ADI1
locus tag: AWJ20_4826
product: acireductone dioxygenase (Ni2+-requiring)
transcript id: XM_018881922.1
SIO_010081: AWJ20_4826
subclass of: SO_0000673
so part of: AWJ20_4826
location: <655610..>656128
location: region:655610-656128:1
so has part: feature:655610-656128:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:655610-656128:1:exon

AWJ20_4826
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ADI1
locus tag: AWJ20_4826
inference: similar to AA sequence:KEGG_Orthology:K08967
note: Acireductone dioxygenease involved in the methionine salvage pathway; ortholog of human MTCBP-1; transcribed as polycistronic mRNA with YMR010W and regulated post-transcriptionally by RNase III (Rnt1p) cleavage; ADI1 mRNA is induced in heat shock conditions; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0010308 - acireductone dioxygenase (Ni2+-requiring) activity [Evidence IMP] [PMID 15938715]; GO_function: GO:0010309 - acireductone dioxygenase [iron(II)-requiring] activity [Evidence IEA,IEA,IEA]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA,IEA,IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IGI,IMP,ISS] [PMID 15938715]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IMP] [PMID 18625006]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]
codon start: 1
product: acireductone dioxygenase (Ni2+-requiring)
translation: MKIYYHDGLEGDQRLRHDSGKEVTVEELDKLAVKAYHFDDIKDVDKLAESRNYINRDVINVSPEALGGKESYETKIKTFYTEHLHEDEEIRYVLDGEGYFDVRDKSDRWIRCLLTKGDLLILPAGIYHRFTTASNDYIQAMRLFQAEPKWIPHNRPCDNNEYRVEYVKSISV
SIO_010081: AWJ20_4826
subclass of: SO_0000673
so part of: AWJ20_4826
location: 655610..656128
location: region:655610-656128:1
so has part: feature:655610-656128:1:exon

XP_018736352.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:655610-656128:1:exon

AWJ20_4827
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: VPS53
locus tag: AWJ20_4827
so part of: sequence
location: <663078..>665963
location: region:663078-665963:1
so has part: feature:663078-665963:1:exon
subclass of: SO_0000010

30037001
type: Gene
SIO_000068: ncbigene

position:663078:1
position: 663078
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:665963:1
position: 665963
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:663078-665963:1:exon

AWJ20_4827
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: VPS53
locus tag: AWJ20_4827
product: Vps53p
transcript id: XM_018881923.1
SIO_010081: AWJ20_4827
subclass of: SO_0000673
so part of: AWJ20_4827
location: <663078..>665963
location: region:663078-665963:1
so has part: feature:663078-665963:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:663078-665963:1:exon

AWJ20_4827
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: VPS53
locus tag: AWJ20_4827
note: Component of the GARP (Golgi-associated retrograde protein) complex; GARP is required for the recycling of proteins from endosomes to the late Golgi, and for mitosis after DNA damage induced checkpoint arrest; required for vacuolar protein sorting; members of the GARP complex are Vps51p-Vps52p-Vps53p-Vps54p; GO_component: GO:0000938 - GARP complex [Evidence IPI] [PMID 10637310]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 10637310]; GO_component: GO:0005794 - Golgi apparatus [Evidence TAS] [PMID 11689439]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IMP] [PMID 10637310]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IDA] [PMID 12686613]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Vps53p
translation: MASFGVANGHSGGSGLGGEDDDPLSLPNYSPVDHLNVLFPTSANVQRVGDIRDLAQLYGQSLESKLINGRRTSGSTGSSSIEAVSKTLEEVRSLTDQIDSLRTQAASTDQAITAMTLDIKKLDNTKANLIQSITVLKRLQMLTTAYNQLSSLVARRQYKEMSQTLPAVMELMAHFRQFRSISQIATLSKQVSDIQVRISDQIFDDFATVIEHKPGSRTVAGSAGVSGTGTPVLNGSSTGFSGSGAGSGTGSATQTGAPASIVDISATLADACVVLDSLPGSTARDRLISWFCNVQLKEYRTIFRSSDEAGSLENISRRYSYLKRLLKTHSDEYARYFVPSWNVTEELCKRFCATTREDIQGLLSQVSSTQTNPKESDVQLLLNSLNETLEFEQYLEKKFKYMNPRPASSSSTSSSEPFKFANSVSIAFQPHLNIWIQFQDRALAQKFQEFRAVSRHSQSQGTRSQTGSDDNDQENKDDDDPTVLPSSADLFIFYRSVLTQTAKLSNREPLLQLSNLFGKWLTVYCSQILRSYIPDRLVTTDDIKTICLVITTADYCFNTTNQLEQKLVDQLDPEFKVGVDLEREKGMFLEVINLCIRNLVRKVEAGCEFAWREMANTNWSKVETVGDQSSYVADLTSNIERDTLAILECMKKETHARMLCDKIVEAVTGDFLQSVVRCRPISEVSAEQMLLDLYVLKGCFLKLPTLAQKQHDHGSMDINGTDKSSTGIHNNDSGTTNGLTTGSETSTVSSAYTRHVTKSLSRVETILKVILTQVNPAEGLVQNYFYLVGDKSQQNFAKILELKGITRGGQTRFLEMFNAHLKAHDNLVDESPILSSLQLNPLVGKGTVVGGSRVSSASHINIGIGGLGGAAGIMGSGSGINLVGSNNSSNNNSGSSSGNPFQNGSHLFDTKGPSILSKEGFERFTHGAEAPVNKLNENFRNFGRLFRRDGSGSPLGNRNNH
SIO_010081: AWJ20_4827
subclass of: SO_0000673
so part of: AWJ20_4827
location: 663078..665963
location: region:663078-665963:1
so has part: feature:663078-665963:1:exon

XP_018736353.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:663078-665963:1:exon

AWJ20_4828
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PML1
locus tag: AWJ20_4828
so part of: sequence
location: complement(<666271..>667101)
location: region:666271-667101:-1
so has part: feature:666271-667101:-1:exon
subclass of: SO_0000010

30037002
type: Gene
SIO_000068: ncbigene

position:666271:-1
position: 666271
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:667101:-1
position: 667101
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:666271-667101:-1:exon

AWJ20_4828
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PML1
locus tag: AWJ20_4828
product: Pml1p
transcript id: XM_018881924.1
SIO_010081: AWJ20_4828
subclass of: SO_0000673
so part of: AWJ20_4828
location: complement(<666271..>667101)
location: region:666271-667101:-1
so has part: feature:666271-667101:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:666271-667101:-1:exon

AWJ20_4828
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PML1
locus tag: AWJ20_4828
inference: similar to AA sequence:KEGG_Orthology:K13108
note: Subunit of the RES complex; RES complex is required for nuclear retention of unspliced pre-mRNAs; acts in the same pathway as Pml39p and Mlp1p; GO_component: GO:0070274 - RES complex [Evidence IDA] [PMID 15565172]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 15565172]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IDA] [PMID 15565172]; GO_process: GO:0051237 - maintenance of RNA location [Evidence IMP] [PMID 16162818]
codon start: 1
product: Pml1p
translation: MSDGNEGRDRYGRVKREYRDEDWHERQRRGPRNQNRSRSPGRRPGSGARTGANAVPVKREDRGDGGRTRSHERNRDRDRDRDMRREWDRGSRDRSGIRPKEEDLWSNDDSKEAPPSPPPVKPNYSHSGVLTEESKKDSEGNILKYHEPEDATTPPKTPEYRIYVFSESEQGKLIDTIKLNQKSHYLLGRDTKVCDIPVDIKSCSRQHAVIQFRRISKTDRFGDTHHTIKPYIIDLESSYGTQLNGDDVPPSRYVELRNKDLIQFCGHPREYLWIES
SIO_010081: AWJ20_4828
subclass of: SO_0000673
so part of: AWJ20_4828
location: complement(666271..667101)
location: region:666271-667101:-1
so has part: feature:666271-667101:-1:exon

XP_018736354.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:666271-667101:-1:exon

AWJ20_4829
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: HCA4
locus tag: AWJ20_4829
so part of: sequence
location: <667803..>670199
location: region:667803-670199:1
so has part: feature:667803-670199:1:exon
subclass of: SO_0000010

30037003
type: Gene
SIO_000068: ncbigene

position:667803:1
position: 667803
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:670199:1
position: 670199
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:667803-670199:1:exon

AWJ20_4829
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: HCA4
locus tag: AWJ20_4829
product: RNA-dependent ATPase HCA4
transcript id: XM_018881925.1
SIO_010081: AWJ20_4829
subclass of: SO_0000673
so part of: AWJ20_4829
location: <667803..>670199
location: region:667803-670199:1
so has part: feature:667803-670199:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:667803-670199:1:exon

AWJ20_4829
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: HCA4
locus tag: AWJ20_4829
inference: similar to AA sequence:KEGG_Orthology:K14776
note: DEAD box RNA helicase; high-copy number suppression of a U14 snoRNA processing mutant suggests an involvement in 18S rRNA synthesis; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IC] [PMID 16209945]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IMP] [PMID 16209945]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA] [PMID 23153376]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 18975973]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 23153376]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 16209945]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]
codon start: 1
product: RNA-dependent ATPase HCA4
translation: MSSNGHGKRDTNGSKHSVNGKKNAHNKNGGGANNNKSKHVKRQSENAHIAALETQIKEWDPAEHPNLTKFEQLPLSRATLQGLRSSHFVDMTDIQRQSLMASLKGEDILGAARTGSGKTLAFLIPVLERLYRQKWNQQDGLGALIISPTRELAIQIFQVLRKIGRAHSLSAGLVIGGKDVQVESERLARLNILIGTPGRLLQHLDQTAGFDVSNLQMLVLDEADRILDMGFKKSLDAIIDNLPTTRQTLLFSATQTKTVSDLARLSLSDPRYISVHEEDQTATPKGLEQFYIVSPLDEKLDNMYAFIKSHIKTKMLIFFSSSKQVRFAYESFRKLQPGIPLLHLHGKQKQQARIDVTQKFSSAQYSCLFATDIVARGIDFPAVDWVIQVDAPEDAATYIHRVGRSARFDKKGRALLFVTPSEEKGMISALESRKVPISKLTIREAKKKSIRQDLQALCFQDPELKYLGQKAFISYVRSVYIQKNKDIFNFESLPLEKFAESLGLPGAPNIKIKGGERSKEAKNAPRQLLKLTKEPGSDDEQEGEDKKKEPEKVRTKYDRMFERKNQNVLSEHYLNLTKTAGDEDDGDDFIAVKRQDHIIDDEEIPNLLEIPTSKRAQKRALSKKLSTKSKGNATKLVFDDEGNAHAIYELEDEEDFKKAGDAAVQKAEFVARESAAMQEKDIEDKQVARDKRVEKKRRRQEIERRALEAEQDESDDGEGGYQVTLGGADDESDYDHNQEPDIDRDYESSDNDEPAAKKPKWFQKDKDSAPVRNGVLEVEEPDTLEDLEALSARLIRGR
SIO_010081: AWJ20_4829
subclass of: SO_0000673
so part of: AWJ20_4829
location: 667803..670199
location: region:667803-670199:1
so has part: feature:667803-670199:1:exon

XP_018736355.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:667803-670199:1:exon

AWJ20_4830
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TPP1
locus tag: AWJ20_4830
so part of: sequence
location: <671459..>672370
location: region:671459-672370:1
so has part: feature:671459-672370:1:exon
subclass of: SO_0000010

30037005
type: Gene
SIO_000068: ncbigene

position:671459:1
position: 671459
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:672370:1
position: 672370
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:671459-672370:1:exon

AWJ20_4830
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TPP1
locus tag: AWJ20_4830
product: Tpp1p
transcript id: XM_018881927.1
SIO_010081: AWJ20_4830
subclass of: SO_0000673
so part of: AWJ20_4830
location: <671459..>672370
location: region:671459-672370:1
so has part: feature:671459-672370:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:671459-672370:1:exon

AWJ20_4830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TPP1
locus tag: AWJ20_4830
inference: similar to AA sequence:KEGG_Orthology:K08073
note: DNA 3'-phosphatase; functions in repair of endogenous damage of double-stranded DNA, activity is specific for removal of 3' phosphates at strand breaks; similar to the l-2-haloacid dehalogenase superfamily; homolog of human polynucleotide kinase/3'-phosphatase; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 11278831]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 15222769]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 15222769]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046403 - polynucleotide 3'-phosphatase activity [Evidence IEA]; GO_function: GO:0046403 - polynucleotide 3'-phosphatase activity [Evidence IDA] [PMID 11278831]; GO_function: GO:0046403 - polynucleotide 3'-phosphatase activity [Evidence IMP] [PMID 15222769]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006302 - double-strand break repair [Evidence IGI,IMP] [PMID 11585902]; GO_process: GO:0098506 - polynucleotide 3' dephosphorylation [Evidence IEA]
codon start: 1
product: Tpp1p
translation: MGPKRKAVGTAASFFQSKKLAVAKPTSIVSTSGNDERNVDEDVVLMPGLRWTLNGTLVRAVYTPTNTEEQKGSVPEEEREQTSIPPSHTESETKNAGASSPKRLAIAAFDLDSTLVTTKGRSPFPRDGSDWKWLDTSVRDKLQKLVNRTVVKNGKSENEEFSVNQGADVSTQDASMVDPSTEYVLAIISNQGGVVAENDKKRYLYLKDRVKSIVKDLDTVPLRFYAATKPKKGASDKYRKPLTGMWEALQADLAPVYSVDIEKSFFVGDAAGRRSDFSDSDLKFAQAVGLRFFTPEKFFGLSD
SIO_010081: AWJ20_4830
subclass of: SO_0000673
so part of: AWJ20_4830
location: 671459..672370
location: region:671459-672370:1
so has part: feature:671459-672370:1:exon

XP_018736356.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:671459-672370:1:exon

AWJ20_4831
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RPL9B
locus tag: AWJ20_4831
so part of: sequence
location: complement(<672801..>673370)
location: region:672801-673370:-1
so has part: feature:672801-673370:-1:exon
subclass of: SO_0000010

30037006
type: Gene
SIO_000068: ncbigene

position:672801:-1
position: 672801
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:673370:-1
position: 673370
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:672801-673370:-1:exon

AWJ20_4831
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RPL9B
locus tag: AWJ20_4831
product: ribosomal 60S subunit protein L9B
transcript id: XM_018881928.1
SIO_010081: AWJ20_4831
subclass of: SO_0000673
so part of: AWJ20_4831
location: complement(<672801..>673370)
location: region:672801-673370:-1
so has part: feature:672801-673370:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:672801-673370:-1:exon

AWJ20_4831
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RPL9B
locus tag: AWJ20_4831
inference: similar to AA sequence:KEGG_Orthology:K02940
note: Ribosomal 60S subunit protein L9B; homologous to mammalian ribosomal protein L9 and bacterial L6; RPL9B has a paralog, RPL9A, that arose from a single-locus duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 18782943]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 18782943]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IDA] [PMID 18782943]; GO_process: GO:0006412 - translation [Evidence IEA]
codon start: 1
product: ribosomal 60S subunit protein L9B
translation: MKFIQTDQVLEVPEGVTVDIKSRIVTVTGPRGTLVKNLRHADVTFTKVNDKQIRLTVHHGDRKHVATLRTVKSLVANLITGVTKGYKYKMRYVYAHFPINVNLLEDGKVVEIRNFLGEKRVRTIHVLEGVTVSISSAQKDELILEGNSLENVSQSAADIQQICRVRNKDIRKFLDGIYVSERGLIEEDA
SIO_010081: AWJ20_4831
subclass of: SO_0000673
so part of: AWJ20_4831
location: complement(672801..673370)
location: region:672801-673370:-1
so has part: feature:672801-673370:-1:exon

XP_018736357.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:672801-673370:-1:exon

AWJ20_4832
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4832
so part of: sequence
location: <673083..>673424
location: region:673083-673424:1
so has part: feature:673083-673424:1:exon
subclass of: SO_0000010

30037007
type: Gene
SIO_000068: ncbigene

position:673083:1
position: 673083
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:673424:1
position: 673424
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:673083-673424:1:exon

AWJ20_4832
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4832
product: hypothetical protein
transcript id: XM_018881929.1
SIO_010081: AWJ20_4832
subclass of: SO_0000673
so part of: AWJ20_4832
location: <673083..>673424
location: region:673083-673424:1
so has part: feature:673083-673424:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:673083-673424:1:exon

AWJ20_4832
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4832
codon start: 1
product: hypothetical protein
translation: MGIDVSHLVLVTLGDTSDQVGDEGLNSTEGSNVLSVTVVDSKTDLLVVDLGEGNISVTEVLDKSTTGTSNGDDSGLDVDSDALRDFKDLIGLNELHFCAVMGTMSILRRSLNA
SIO_010081: AWJ20_4832
subclass of: SO_0000673
so part of: AWJ20_4832
location: 673083..673424
location: region:673083-673424:1
so has part: feature:673083-673424:1:exon

XP_018736358.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:673083-673424:1:exon

AWJ20_4833
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4833
so part of: sequence
location: <674426..>675199
location: region:674426-675199:1
so has part: feature:674426-675199:1:exon
subclass of: SO_0000010

30037008
type: Gene
SIO_000068: ncbigene

position:674426:1
position: 674426
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:675199:1
position: 675199
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:674426-675199:1:exon

AWJ20_4833
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4833
product: hypothetical protein
transcript id: XM_018881930.1
SIO_010081: AWJ20_4833
subclass of: SO_0000673
so part of: AWJ20_4833
location: <674426..>675199
location: region:674426-675199:1
so has part: feature:674426-675199:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:674426-675199:1:exon

AWJ20_4833
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4833
codon start: 1
product: hypothetical protein
translation: MLSRSVLAQARTIGSSRIAGRRTGAMASTILQRGLKFQSKQYNPSPGFSVFSEELEQEIRHKLTSLPSSNKVFQNADGTARNPSDEELKVVAELGVLAQGDRATFLDRFRLSQEQRELLAENSYLLDDYVNNGKRILDKIPVEDPTTGEITWTVIRENQKEGWENLIYYGYVPALLISLFFALFLDKENISDWAMEELRLRAQERYNSGMEEINNSELSAEERKKQDALIVERIISGDYDRLAGLRKAGSDLPASLL
SIO_010081: AWJ20_4833
subclass of: SO_0000673
so part of: AWJ20_4833
location: 674426..675199
location: region:674426-675199:1
so has part: feature:674426-675199:1:exon

XP_018736359.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:674426-675199:1:exon

AWJ20_4834
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4834
so part of: sequence
location: complement(<675471..>677702)
location: region:675471-677702:-1
so has part: feature:675471-677702:-1:exon
subclass of: SO_0000010

30037009
type: Gene
SIO_000068: ncbigene

position:675471:-1
position: 675471
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:677702:-1
position: 677702
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:675471-677702:-1:exon

AWJ20_4834
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4834
product: hypothetical protein
transcript id: XM_018881931.1
SIO_010081: AWJ20_4834
subclass of: SO_0000673
so part of: AWJ20_4834
location: complement(<675471..>677702)
location: region:675471-677702:-1
so has part: feature:675471-677702:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:675471-677702:-1:exon

AWJ20_4834
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4834
codon start: 1
product: hypothetical protein
translation: MDRQAGFLGKNERGEGTRPEIEHNTVNASSNVHKASPRNPLDSFDNDISGGPFASSSNYSTTAHPNTTISPQTPPASELETLPTPLPSGDVYHDKGEHSRVTNIDMSASEEASRSATVNSGSVEIKELTEDEDIDDESEEEIGEDDEEYVDIDSSPTKRKSSQRRRSRGSHKVNDGSRPSSPTPSGGRNAVAPKPEPDSGNPLSGLGQSLPRSGPSVPQALPMNWRNPPPEPAGASEFVSLTEQDIETLPESSLRPTLQRATKTIQEYRAALRKYESLIAHYKLQNKLLTIETHEAAQRHEVETSIAKREVDRLRIETMAAAKAAQNAAAAKAAAPSSEIIDDLQSALESYKRRLRKTRTKLQIATDQLEDKDEEIERLRRGLSDMATSFSRESGPSVTVPTSGPPSHGPVVGPLPGMSSGPPINSPVSMAPGGPVYYANTPGPSQQPPIGPMSPSQNLRTPFTHLPPRQHQRDSSSASDDSGQGLSALEMLASQVLSQQRIPPSPLRRQPQQHENIQQQQLQQQQQQSQQPLLPLPTPSRQRSQGLMSPLEFNEASSVPSLHAVQAMSPEKRRRESSASTITIPTDGEDEGDEHDVNGTDEEVEDDDDDDYKESAGRDESTAVRRSGRLSREGKRRSGGSAQVFTTGAETDVEESDDSKDDSDIDNGRQGGMRSSRGTRSQRQNSRQRVPVSSESPNRRSSPGSPKKYIRKERNDTQSSSKPSASSSSSKRMPVGRILDFGN
SIO_010081: AWJ20_4834
subclass of: SO_0000673
so part of: AWJ20_4834
location: complement(675471..677702)
location: region:675471-677702:-1
so has part: feature:675471-677702:-1:exon

XP_018736360.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:675471-677702:-1:exon

AWJ20_4835
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: GET3
locus tag: AWJ20_4835
so part of: sequence
location: <682334..>683296
location: region:682334-683296:1
so has part: feature:682334-683296:1:exon
subclass of: SO_0000010

30037010
type: Gene
SIO_000068: ncbigene

position:682334:1
position: 682334
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:683296:1
position: 683296
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:682334-683296:1:exon

AWJ20_4835
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: GET3
locus tag: AWJ20_4835
product: guanine nucleotide exchange factor GET3
transcript id: XM_018881932.1
SIO_010081: AWJ20_4835
subclass of: SO_0000673
so part of: AWJ20_4835
location: <682334..>683296
location: region:682334-683296:1
so has part: feature:682334-683296:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:682334-683296:1:exon

AWJ20_4835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: GET3
locus tag: AWJ20_4835
inference: similar to AA sequence:KEGG_Orthology:K01551
note: Guanine nucleotide exchange factor for Gpa1p; amplifies G protein signaling; subunit of the GET complex, which is involved in Golgi to ER trafficking and insertion of proteins into the ER membrane; has low-level ATPase activity; protein abundance increases in response to DNA replication stress; GO_component: GO:0043529 - GET complex [Evidence IEA]; GO_component: GO:0043529 - GET complex [Evidence IPI] [PMID 16269340]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 12680698]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IDA] [PMID 18261907]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000750 - pheromone-dependent signal transduction involved in conjugation with cellular fusion [Evidence IMP] [PMID 18261907]; GO_process: GO:0006620 - posttranslational protein targeting to membrane [Evidence IDA] [PMID 20850366]; GO_process: GO:0045048 - protein insertion into ER membrane [Evidence IEA]; GO_process: GO:0045048 - protein insertion into ER membrane [Evidence IMP] [PMID 18724936]; GO_process: GO:0046685 - response to arsenic-containing substance [Evidence IEA]; GO_process: GO:0009408 - response to heat [Evidence IMP] [PMID 12680698]; GO_process: GO:0010038 - response to metal ion [Evidence IMP] [PMID 12680698]; GO_process: GO:0006890 - retrograde vesicle-mediated transp…
codon start: 1
product: guanine nucleotide exchange factor GET3
translation: MSEELNLEPSLQNIIDQKSLRWIFVGGKGGVGKTTTSCSLALQLAKNRENVLLISTDPAHNLSDAFGQKFGKDARPVNGVPNLHAMEIDPNGSIQEFLDQPQNQAASSMMQDIAFSIPGVDEALSFAEVLKQVKAQSYSVIVFDTAPTGHTLRFLQFPTILEKALGKISEISGRFGPMLNSLMGASGTNTEDMLAKLESTRETIAEVNKQFQNPDLTTFVCVCIAEFLSLYETERMVQELTSYGIDTHCIVVNQLLFPKTTSECEQCNARYKMQQKYLEQILELYEDFHIVQLPQLTSEVRGLESLQTFSEKLIHPYVPN
SIO_010081: AWJ20_4835
subclass of: SO_0000673
so part of: AWJ20_4835
location: 682334..683296
location: region:682334-683296:1
so has part: feature:682334-683296:1:exon

XP_018736361.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:682334-683296:1:exon

AWJ20_4836
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4836
so part of: sequence
location: complement(<683565..>685508)
location: region:683565-685508:-1
so has part: feature:683565-685508:-1:exon
subclass of: SO_0000010

30037011
type: Gene
SIO_000068: ncbigene

position:683565:-1
position: 683565
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:685508:-1
position: 685508
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:683565-685508:-1:exon

AWJ20_4836
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4836
product: hypothetical protein
transcript id: XM_018881933.1
SIO_010081: AWJ20_4836
subclass of: SO_0000673
so part of: AWJ20_4836
location: complement(<683565..>685508)
location: region:683565-685508:-1
so has part: feature:683565-685508:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:683565-685508:-1:exon

AWJ20_4836
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4836
codon start: 1
product: hypothetical protein
translation: MVNGTTKISNETVELSSLPSVKQKGEVWLTLGGPKDGDDVKLLLRWVPMVITFSTGETGDGHINVREELIKDLEPFDIKLSSELHQLTKFYMKPTSNSSKLLTALVKCIPIVTFEFSKALKKACEVLSGDDSMETDFYKNFPNAEQYIPDPAMAPNSDRMKLFENKVFIFPQTKERDALLGAITSGGGKAYVYEMTSAHEPPSRIKDFVLSKVKNIDNLVLVGYHTSERSNQEDIDKLLVLNNAAKMIGTRLFAASDFLTVILEADASKLNLRRPDEDGAPVSFTEQPKRLGTASFLETSIRVEAERKPGPIRRRKPQTKQLNIMDLMATTKREPDMPVLAPNQADSLSMNKVADSMAIDAKDGAVETADSQATAKEPDTHGETRSPSRRKRRERINDDIITQTSTFPPDVTQNAREYKRRKLDLQQASDNKSSNVDDDMFAESVPALIEDEDNNPDEDSSEPKDGHVGVIKKWSGDLDDDSEDSDDDLAGFENLAIVEATLEFRQHLPKPKAPTVKSKRPNFKGFRMKEPRKPPSMKVDYMEAAPTDMLLEQDMSMFANKERYTKRKLPPVESLQNSSRSKRRKETKTQAAENMFVNSDDSLSEDESEVGMNNYSSAISNESRPVHSMDDYDEDDEDELSFRFSKN
SIO_010081: AWJ20_4836
subclass of: SO_0000673
so part of: AWJ20_4836
location: complement(683565..685508)
location: region:683565-685508:-1
so has part: feature:683565-685508:-1:exon

XP_018736362.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:683565-685508:-1:exon

AWJ20_4837
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: VPS35
locus tag: AWJ20_4837
so part of: sequence
location: complement(<686796..>688427)
location: region:686796-688427:-1
so has part: feature:686796-688427:-1:exon
subclass of: SO_0000010

30037012
type: Gene
SIO_000068: ncbigene

position:686796:-1
position: 686796
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:688427:-1
position: 688427
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:686796-688427:-1:exon

AWJ20_4837
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: VPS35
locus tag: AWJ20_4837
product: Vps35p
transcript id: XM_018881934.1
SIO_010081: AWJ20_4837
subclass of: SO_0000673
so part of: AWJ20_4837
location: complement(<686796..>688427)
location: region:686796-688427:-1
so has part: feature:686796-688427:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:686796-688427:-1:exon

AWJ20_4837
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: VPS35
locus tag: AWJ20_4837
inference: similar to AA sequence:KEGG_Orthology:K18468
note: Endosomal subunit of membrane-associated retromer complex; required for retrograde transport; receptor that recognizes retrieval signals on cargo proteins, forms subcomplex with Vps26p and Vps29p that selects cargo proteins for retrieval; interacts with Ypt7p; GO_component: GO:0005768 - endosome [Evidence IPI] [PMID 9700157]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22593205]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0030904 - retromer complex [Evidence IEA]; GO_component: GO:0030904 - retromer complex [Evidence IMP,IPI] [PMID 9700157]; GO_component: GO:0030906 - retromer complex, inner shell [Evidence IPI] [PMID 9700157]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP,IPI] [PMID 9700157]; GO_process: GO:0045053 - protein retention in Golgi apparatus [Evidence IMP] [PMID 8649377]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IPI] [PMID 9700157]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Vps35p
translation: MKELEQDDDGDVTKKLGDVTIGDSQESKPVGDNQTESETGDDKPKATSEDESEGKDNGSGENLFEKFWSHFNSLVQAHPDLPLPDKTALLLGIAKLSLNWYPDRKDYIDRILQYVATIQQQLHADKEAAVNVQELLLSLINFYPDFLTVLSIPGYQPLLSSQPISTQQAIAGSVINAVLKQSKKITELDDVKGVFELVSIVIKDGTASAGHSTEFPPGGTSTKKQTASTPDISNDSEEIVADQSKLAQLVHLVYNKNPDVHAKLLAAAKKALSDGGMRIKYTYPAVVTSAFKLVRRYQRRKSDSEKAAKIGSSFKFIHRLIDELYNSGRSELALRLYVNVASLADQVNAEEASYEFFAEAFTVYEESVSDSRAQFQALCIIAGALQSTRNFTADNYDTLVSKCALHASKLLKKPDQCRAVYLASHLWWAVEIPGRTEEELFRDDKRVLECLQRSLRVADACMDVAVSVELFVEILNRYIYYFDHGNSAVTVRYINGLINLIQTNLNNNADEKISDSPRKHFERTLEYITQQKSVDDKFQEIVW
SIO_010081: AWJ20_4837
subclass of: SO_0000673
so part of: AWJ20_4837
location: complement(686796..688427)
location: region:686796-688427:-1
so has part: feature:686796-688427:-1:exon

XP_018736363.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:686796-688427:-1:exon

AWJ20_4838
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: VPS35
locus tag: AWJ20_4838
so part of: sequence
location: complement(<688514..>689552)
location: region:688514-689552:-1
so has part: feature:688514-689552:-1:exon
subclass of: SO_0000010

30037013
type: Gene
SIO_000068: ncbigene

position:688514:-1
position: 688514
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:689552:-1
position: 689552
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:688514-689552:-1:exon

AWJ20_4838
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: VPS35
locus tag: AWJ20_4838
product: Vps35p
transcript id: XM_018881935.1
SIO_010081: AWJ20_4838
subclass of: SO_0000673
so part of: AWJ20_4838
location: complement(join(<688514..688525,688614..>689552))
location: region:688514-689552:-1
so has part: feature:688614-689552:-1:exon
so has part: feature:688514-688525:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:688614-689552:-1:exon

position:688614:-1
position: 688614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:688514-688525:-1:exon

position:688525:-1
position: 688525
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

AWJ20_4838
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: VPS35
locus tag: AWJ20_4838
inference: similar to AA sequence:KEGG_Orthology:K18468
note: Endosomal subunit of membrane-associated retromer complex; required for retrograde transport; receptor that recognizes retrieval signals on cargo proteins, forms subcomplex with Vps26p and Vps29p that selects cargo proteins for retrieval; interacts with Ypt7p; GO_component: GO:0005768 - endosome [Evidence IPI] [PMID 9700157]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22593205]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0030904 - retromer complex [Evidence IEA]; GO_component: GO:0030904 - retromer complex [Evidence IMP,IPI] [PMID 9700157]; GO_component: GO:0030906 - retromer complex, inner shell [Evidence IPI] [PMID 9700157]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP,IPI] [PMID 9700157]; GO_process: GO:0045053 - protein retention in Golgi apparatus [Evidence IMP] [PMID 8649377]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IPI] [PMID 9700157]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Vps35p
translation: MSSNPPAPLSPEEQARHLEESLQFIRQQEHQMRKCLETKGKLLDAIRHASTFLAELRSSVLTPKQYYELYIAVFDALRHLGDFLREDHPNHHLADIYELVQYAGNIVPRLYLMITVGTAYMSVPDAPVREIMKDMMEMCRGVQHPIRGLFLRYYLSQGTRDYLPSGEDVNGTNGGVITAAVATTSSDDSAAGPGETKNVADTRSNTSNGNGSETTITGPGSASAVTSAPVIDPELRGNLKDSIQFIITNFIEMNKLWVRLQHQGHSREREKRTKERQELQILVGSNLVRLSQLEGIDKEYYKESILPAILEQVTST
SIO_010081: AWJ20_4838
subclass of: SO_0000673
so part of: AWJ20_4838
location: complement(join(688514..688525,688614..689552))
location: region:688514-689552:-1
so has part: feature:688614-689552:-1:exon
so has part: feature:688514-688525:-1:exon

XP_018736364.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:688614-689552:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:688514-688525:-1:exon

AWJ20_4839
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4839
so part of: sequence
location: complement(<692048..>694123)
location: region:692048-694123:-1
so has part: feature:692048-694123:-1:exon
subclass of: SO_0000010

30037014
type: Gene
SIO_000068: ncbigene

position:692048:-1
position: 692048
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:694123:-1
position: 694123
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:692048-694123:-1:exon

AWJ20_4839
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4839
product: hypothetical protein
transcript id: XM_018881936.1
SIO_010081: AWJ20_4839
subclass of: SO_0000673
so part of: AWJ20_4839
location: complement(<692048..>694123)
location: region:692048-694123:-1
so has part: feature:692048-694123:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:692048-694123:-1:exon

AWJ20_4839
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4839
inference: similar to AA sequence:KEGG_Orthology:K03351
codon start: 1
product: hypothetical protein
translation: MDILVFAPESGGIALYRISGQRIWSIPGKRGAGHVIRSSWRDDGKVLAVLYSDGSYQVIRTSNGKPVLSSGSGDSAIDLSWAEGDITANSGDGSKSEWSSSFKLMETDVLDSLPRLQALPTKPGLLIDVKSSENSISNFDDALSVVLTGDKSGSMNLSMFGIFSIDGIPISNSNIKARDQSQHEPSAHFLKINSNPKDISRGTIIVQNDESKAFVYHKFHLGFIQKFGQNYLTEVSVIPAQISILIEYLQESVALLRKEANTIVEANNKFISLESLNHMRGYLFDFLITGTMCKKITKWIESNNEMGYKRWNKTTITSYDVSNKILYENILPAIERLVVLLSRLRGLAKWKERGVPLGLSGEELDKTIRYAECFFKLTNKCLWEFTDEYEKFRSFALWLELGFESVLDRVVGFSRADEPATVRTTDIMKYITELLPGSVLTSYLTTSTVGVGDEKIDLKQKSDTVNSDSQPLEDHDVSVSQGATSKSTGDASLDSIENLSLANCLENIDSTFSATTTKIESAMKKLISVDVGIPLASSDFNVRQAYFRGTSFVLIYGQDAFLYMVRIHDSGIEVAKIKCENTIIQAEFINESEIILLVVDSDSRYHLQVANYESVAYTALDGKSDLLNQTVATLTHNLDSVDLAPSNTHSFDKDFTPGSFVVNGRSGHELACVLNAERQRYALIYLHVEQA
SIO_010081: AWJ20_4839
subclass of: SO_0000673
so part of: AWJ20_4839
location: complement(692048..694123)
location: region:692048-694123:-1
so has part: feature:692048-694123:-1:exon

XP_018736365.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:692048-694123:-1:exon

AWJ20_4840
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TMA64
locus tag: AWJ20_4840
so part of: sequence
location: <694829..>696511
location: region:694829-696511:1
so has part: feature:694829-696511:1:exon
subclass of: SO_0000010

30037016
type: Gene
SIO_000068: ncbigene

position:694829:1
position: 694829
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:696511:1
position: 696511
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:694829-696511:1:exon

AWJ20_4840
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TMA64
locus tag: AWJ20_4840
product: Tma64p
transcript id: XM_018881938.1
SIO_010081: AWJ20_4840
subclass of: SO_0000673
so part of: AWJ20_4840
location: <694829..>696511
location: region:694829-696511:1
so has part: feature:694829-696511:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:694829-696511:1:exon

AWJ20_4840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TMA64
locus tag: AWJ20_4840
inference: similar to AA sequence:KEGG_Orthology:K15027
note: hypothetical protein that associates with ribosomes; has a putative RNA binding domain; in mammals the corresponding protein, eIF2D, has been shown to possess translation initiation factor activity; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence ISS] [PMID 10093218]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006413 - translational initiation [Evidence IEA]
codon start: 1
product: Tma64p
translation: MQVHSGEKAVLYTDNDGQPVWIALEDGYLIPTLYTAWNAPFLMQRVCTVKYTLERLQSGADLMIPGIFDPLPENVPPGTVVSISLIDSPNIAVAVGIALVDCSRGKLDTNQKGKAVQLINVIDDKLFQLYRKKVPVPIELDVSVPLLETQDTPGDAENDPVTDKSKISAEGQDSIVNHTAESNVIENVNNGSSKETSQVEEITDTTENINLGENQPETETDGPENDTNSPSTAEIDDAFRRALLQTLRKAVDSPIEVPIPSSTFLSNYVLLNLPYNHPSVQMKKTSWKKASKFFKVMEKQSLLKGKERGGEFVITSLAGKNNTEVSSFTLFKPRPFEQHKPAASGSGTTSSNKKTYLSAKEYFKPRSMTAPIFEFSKLDPSKYYTADTIRQTLNNYITGNSLSDPKNPKNVKLDRPLTKALGLSPTIESIGRDKISSLLQSNCSQFHHITSQNDEDLNRQTATTLAKGPIPRITITTEKRAGRKVVTNVTNIEPFHLDPIAFAEELRVACAGSTSVNAIKEGSDLQQVMIQGHHVAAITKTLELKGIRPAWIDVVDKARR
SIO_010081: AWJ20_4840
subclass of: SO_0000673
so part of: AWJ20_4840
location: 694829..696511
location: region:694829-696511:1
so has part: feature:694829-696511:1:exon

XP_018736366.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:694829-696511:1:exon

AWJ20_4841
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: GPI17
locus tag: AWJ20_4841
so part of: sequence
location: complement(<696676..>698139)
location: region:696676-698139:-1
so has part: feature:696676-698139:-1:exon
subclass of: SO_0000010

30037017
type: Gene
SIO_000068: ncbigene

position:696676:-1
position: 696676
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:698139:-1
position: 698139
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:696676-698139:-1:exon

AWJ20_4841
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: GPI17
locus tag: AWJ20_4841
product: Gpi17p
transcript id: XM_018881939.1
SIO_010081: AWJ20_4841
subclass of: SO_0000673
so part of: AWJ20_4841
location: complement(<696676..>698139)
location: region:696676-698139:-1
so has part: feature:696676-698139:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:696676-698139:-1:exon

AWJ20_4841
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: GPI17
locus tag: AWJ20_4841
inference: similar to AA sequence:KEGG_Orthology:K05291
note: Transmembrane protein; subunit of the glycosylphosphatidylinositol transamidase complex that adds GPIs to newly synthesized proteins; human PIG-S homolog; GO_component: GO:0042765 - GPI-anchor transamidase complex [Evidence IEA]; GO_component: GO:0042765 - GPI-anchor transamidase complex [Evidence IDA] [PMID 15939668]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 15075373]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 15939668]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003923 - GPI-anchor transamidase activity [Evidence IMP,ISS] [PMID 11483512]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0016255 - attachment of GPI anchor to protein [Evidence IEA]; GO_process: GO:0016255 - attachment of GPI anchor to protein [Evidence IMP,ISS] [PMID 11483512]
codon start: 1
product: Gpi17p
translation: MASEEAIGNIRRRRWIVLSYLLLGGLIGLPIWIWTTSIWRAPLSYEEMDMYDHNIQDLINVKIPVYLNVGTEFPDLVKSTQLVVNRKLEDRGIKQWNLEILSGRGDANSYNVAFRLGEDDEYIISEVSRDVLITYSIDSVSLGVVPELVSIILVDHLFADELSLLEDAIGQKKQGLDNSDSSDKIVSYSPNYHLTFSLFYGGGDKISWDISQALDEHFAHLKESYARISNLTIDTQVQYYSDLGCNIHHDEENNQWLLDHNDLSTFVNFAEWSLTSIHSYPTLHFILYIPSPKQSPMIIVDSNTNSFSIPQWGGVQIWNKPEASKSHLTVSDLLPILETFSSQFLGLVGAPVHPKSPVIRLDFLSRLSTIRALISASHTLGSLHRLSQSLPDIAIPQPVLYAVKSALLAIQGSLYSLSTGQFTQAIKLAGDALRQSENAFFEKEMVQQAFFPEEHKVAIYLPLLGPIGIVLLMGTLRCFKEFKTHGW
SIO_010081: AWJ20_4841
subclass of: SO_0000673
so part of: AWJ20_4841
location: complement(696676..698139)
location: region:696676-698139:-1
so has part: feature:696676-698139:-1:exon

XP_018736367.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:696676-698139:-1:exon

AWJ20_4842
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MRPL1
locus tag: AWJ20_4842
so part of: sequence
location: <698456..>699388
location: region:698456-699388:1
so has part: feature:698456-699388:1:exon
subclass of: SO_0000010

30037018
type: Gene
SIO_000068: ncbigene

position:698456:1
position: 698456
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:699388:1
position: 699388
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:698456-699388:1:exon

AWJ20_4842
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MRPL1
locus tag: AWJ20_4842
product: mitochondrial 54S ribosomal protein MRPL1
transcript id: XM_018881940.1
SIO_010081: AWJ20_4842
subclass of: SO_0000673
so part of: AWJ20_4842
location: <698456..>699388
location: region:698456-699388:1
so has part: feature:698456-699388:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:698456-699388:1:exon

AWJ20_4842
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MRPL1
locus tag: AWJ20_4842
note: Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0015934 - large ribosomal subunit [Evidence IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0006412 - translation [Evidence IEA]
codon start: 1
product: mitochondrial 54S ribosomal protein MRPL1
translation: MSLARSLLLRSGNAATTTAGLISVSSRPLLQLINPPQPRYGSKKKRDEKKAAKSDGAPSKADAKQLAHQREKVLLRLRQKREETKKATKLRVEAKNASKSSNFMDIETALRYLRAAEVGRSAHATTISLTMRIVAEKGAVPVNTKCRLPKPLDEERIAVFTNSSELAAEARRAGAVLVGGDDIIDQVKQGIINFDKAYATPDIVSRLNQVARILGPKGLMPNAKRGTVTHDIYNALVQASGEMTFKQEGTMLSLPVGRASFTDLEIVSNIVTVTDAIRKFMTDSSAHNKKAYIGKTVITSTTGPSIVVEV
SIO_010081: AWJ20_4842
subclass of: SO_0000673
so part of: AWJ20_4842
location: 698456..699388
location: region:698456-699388:1
so has part: feature:698456-699388:1:exon

XP_018736368.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:698456-699388:1:exon

AWJ20_4843
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4843
so part of: sequence
location: <703912..>704730
location: region:703912-704730:1
so has part: feature:703912-704730:1:exon
subclass of: SO_0000010

30037019
type: Gene
SIO_000068: ncbigene

position:703912:1
position: 703912
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:704730:1
position: 704730
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:703912-704730:1:exon

AWJ20_4843
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4843
product: hypothetical protein
transcript id: XM_018881941.1
SIO_010081: AWJ20_4843
subclass of: SO_0000673
so part of: AWJ20_4843
location: <703912..>704730
location: region:703912-704730:1
so has part: feature:703912-704730:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:703912-704730:1:exon

AWJ20_4843
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4843
codon start: 1
product: hypothetical protein
translation: MSKETAEYTHGHHESVLRSHTWRTVDNSVKFLVPYLKPDSYVLDVGCGPGTITVDMAKNYTPKGKIIGMEYAGSVLEQAAAHAKENNVTNIEFAVGDVHNLSYPDNTFDIVFAHQVVQHIGNPVVALKEMARVVKPGGVVAIRDSDYAGFFWYPELPALKKWQEVYLKVAKANGAEPNAGRHYHSWAHQAGLDQPKLKLSSSTWFYWTPEERAWWSSLWADRTLKSNFATTVLKHDLGTQDDLEEIAQGWRDWGKDKDAIFNLAHVELIYQK
SIO_010081: AWJ20_4843
subclass of: SO_0000673
so part of: AWJ20_4843
location: 703912..704730
location: region:703912-704730:1
so has part: feature:703912-704730:1:exon

XP_018736369.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:703912-704730:1:exon

AWJ20_4844
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PGM2
locus tag: AWJ20_4844
so part of: sequence
location: <705691..>707355
location: region:705691-707355:1
so has part: feature:705691-707355:1:exon
subclass of: SO_0000010

30037020
type: Gene
SIO_000068: ncbigene

position:705691:1
position: 705691
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:707355:1
position: 707355
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:705691-707355:1:exon

AWJ20_4844
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PGM2
locus tag: AWJ20_4844
product: phosphoglucomutase PGM2
transcript id: XM_018881942.1
SIO_010081: AWJ20_4844
subclass of: SO_0000673
so part of: AWJ20_4844
location: <705691..>707355
location: region:705691-707355:1
so has part: feature:705691-707355:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:705691-707355:1:exon

AWJ20_4844
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PGM2
locus tag: AWJ20_4844
inference: similar to AA sequence:KEGG_Orthology:K01835
note: Phosphoglucomutase; catalyzes the conversion from glucose-1-phosphate to glucose-6-phosphate, which is a key step in hexose metabolism; functions as the acceptor for a Glc-phosphotransferase; protein abundance increases in response to DNA replication stress; PGM2 has a paralog, PGM1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8385141]; GO_component: GO:0005829 - cytosol [Evidence IBA]; GO_function: GO:0016868 - intramolecular transferase activity, phosphotransferases [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004614 - phosphoglucomutase activity [Evidence IEA]; GO_function: GO:0004614 - phosphoglucomutase activity [Evidence IMP] [PMID 13887540]; GO_function: GO:0004614 - phosphoglucomutase activity [Evidence IMP] [PMID 2138705]; GO_function: GO:0004614 - phosphoglucomutase activity [Evidence IGI,IMP,ISS] [PMID 8119301]; GO_process: GO:0006011 - UDP-glucose metabolic process [Evidence IGI] [PMID 9252577]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA,IEA]; GO_process: GO:0006874 - cellular calcium ion homeostasis [Evidence IMP] [PMID 10681519]; GO_process: GO:0006874 - cellular calcium ion homeostasis [Evidence IGI,IMP] [PMID 15252028]; GO_process: GO:0030003 - cellular cation homeostasis [Evidence IMP] [PMID 15164360]; GO_process: GO:0019388 - galactose catabolic process [Evidence IMP] [PMID 13887540]; GO_process: GO:0019388 - galactose catabolic process [Evidence IMP] [PMID 14264884]; GO_process: GO:0019388 - galactose catabolic process [Evidence IGI,IMP] [PMID 8119301]; GO_process: GO:0019255 - glucose 1-phosphate metabolic process [Evidence IMP] [PMID 10681519]; GO_process: GO:0019255 - glucose 1-phosphate metabolic process [Evidence IGI,IMP,ISS] [PMID…
codon start: 1
product: phosphoglucomutase PGM2
translation: MTVVSTKAFEGQKPGTSGLRKKVTVFQQPHYTENFVQAILSSIPEGSEGATLVVGGDGRFYNKEVIQIISEISAANGVKKLIIGQNGLLSTPAASHVIRKRKATGGIILTASHNPGGPTNDFGIKYNLANGGPAPESVTDKIYEVTKTISEYKTLKGADFPQVNLSKIGAATYGPLEVEIIDTVEDYLLLVKEIFDFDLIKSFLKSNPDFTILFDALNGITGPYGKAIFIDELGLAASSVQNAVPKTDFGGLHPDPNLTYAHTLVERVDKEKTPFGAASDGDGDRNMIYGANSFVSPGDSVAIIAHHADKIPYFRNGGVNGLARSMPTSGAIDLVAKAKGLKCYEVPTGWKFFTALFDSKQLSICGEESFGTGSDHIREKDGLWAIVAWLNIIAGVAKEDPSKASIAAIQHDFWNTYGRTFFTRYDYENVSSEGAAKVVANLKSQIESPSFVGSKVDNLEVTEAGDFSYTDLDGSVSKNQGLYVKFKGGSRIVVRLSGTGSSGATIRLYIERHESDKSLFSQDAQDYLKETISSAVNFLKLKEFVNREEPDVRT
SIO_010081: AWJ20_4844
subclass of: SO_0000673
so part of: AWJ20_4844
location: 705691..707355
location: region:705691-707355:1
so has part: feature:705691-707355:1:exon

XP_018736370.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:705691-707355:1:exon

AWJ20_4845
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: YKU80
locus tag: AWJ20_4845
so part of: sequence
location: complement(<707575..>709068)
location: region:707575-709068:-1
so has part: feature:707575-709068:-1:exon
subclass of: SO_0000010

30037021
type: Gene
SIO_000068: ncbigene

position:707575:-1
position: 707575
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:709068:-1
position: 709068
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:707575-709068:-1:exon

AWJ20_4845
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: YKU80
locus tag: AWJ20_4845
product: Yku80p
transcript id: XM_018881943.1
SIO_010081: AWJ20_4845
subclass of: SO_0000673
so part of: AWJ20_4845
location: complement(<707575..>709068)
location: region:707575-709068:-1
so has part: feature:707575-709068:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:707575-709068:-1:exon

AWJ20_4845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: YKU80
locus tag: AWJ20_4845
inference: similar to AA sequence:KEGG_Orthology:K10885
note: Subunit of the telomeric Ku complex (Yku70p-Yku80p); involved in telomere length maintenance, structure and telomere position effect; required for localization of telomerase ribonucleoprotein via interaction with the TLC1 guide RNA; relocates to sites of double-strand cleavage to promote nonhomologous end joining during DSB repair; GO_component: GO:0043564 - Ku70:Ku80 complex [Evidence IEA]; GO_component: GO:0043564 - Ku70:Ku80 complex [Evidence IDA] [PMID 8754818]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IEA,IEA]; GO_component: GO:0000790 - nuclear chromatin [Evidence TAS] [PMID 10367891]; GO_component: GO:0005724 - nuclear telomeric heterochromatin [Evidence TAS] [PMID 12080091]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004003 - ATP-dependent DNA helicase activity [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IDA] [PMID 16166630]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 12975323]; GO_function: GO:0003684 - damaged DNA binding [Evidence IEA]; GO_function: GO:0003684 - damaged DNA binding [Evidence TAS] [PMID 10367891]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0042162 - telomeric DNA binding [Evidence IEA]; GO_function: GO:0042162 - telomeric DNA binding [Evidence IDA] [PMID 17656141]; GO_process: GO:0032508 - DNA duplex unwinding [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence IDA] [PMID 11553718]; GO_process: GO:0006342 -…
codon start: 1
product: Yku80p
translation: MICLITNGTGEMDFKKVPDLVKRLKAANIVLRILMIGMKDSGDELTTFEKEIRQSNIEELQNIERDYYPPDSDGRPDDMYMFAPYEEAYFYVSKPVVQPVGVLRQFKGVLRLGRPTEDSESVKHVIDEENTITIPVYGYPCTRRTRVPTAKSVIVKRKRPDDDGGESEDDEFNDRKVTVHFVRDYYVEKVKDENGEGEQNPDNRIILERQNLLKGYRFGSEIVTFDAETKKELSSIHLSNSPELSIYGFCSAKDVPRWYLMEASDYIVVSPEARKKDQLAMSAMILTLQLDDRVAIARYVAKPEKDAHMVLLSPYVDVDFQALILNILPFSQDYRKFQFPSLLEIKSKSGKILPPDNPQRINREPTTEMNDLMSHYIDEMDLEHAGEPDEDGEPTEYMTCEDTFNPVLHRLRNAIKVAGLTGAKNFVPPVWPELVKYSHPPAGRLDQLKPTTDRLSQLLDIKVVETKKSEKQKVKQEAEASKRVATDTDIKLEDLLS
SIO_010081: AWJ20_4845
subclass of: SO_0000673
so part of: AWJ20_4845
location: complement(707575..709068)
location: region:707575-709068:-1
so has part: feature:707575-709068:-1:exon

XP_018736371.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:707575-709068:-1:exon

AWJ20_4846
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: GAL7
locus tag: AWJ20_4846
so part of: sequence
location: complement(<709547..>711244)
location: region:709547-711244:-1
so has part: feature:709547-711244:-1:exon
subclass of: SO_0000010

30037022
type: Gene
SIO_000068: ncbigene

position:709547:-1
position: 709547
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:711244:-1
position: 711244
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:709547-711244:-1:exon

AWJ20_4846
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: GAL7
locus tag: AWJ20_4846
product: UDP-glucose:hexose-1-phosphate uridylyltransferase
transcript id: XM_018881944.1
SIO_010081: AWJ20_4846
subclass of: SO_0000673
so part of: AWJ20_4846
location: complement(join(<709547..709550,709779..709792,710159..>711244))
location: region:709547-711244:-1
so has part: feature:710159-711244:-1:exon
so has part: feature:709779-709792:-1:exon
so has part: feature:709547-709550:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:710159-711244:-1:exon

position:710159:-1
position: 710159
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:709779-709792:-1:exon

position:709779:-1
position: 709779
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:709792:-1
position: 709792
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:709547-709550:-1:exon

position:709550:-1
position: 709550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

AWJ20_4846
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: GAL7
locus tag: AWJ20_4846
inference: similar to AA sequence:KEGG_Orthology:K00965
note: Galactose-1-phosphate uridyl transferase; synthesizes glucose-1-phosphate and UDP-galactose from UDP-D-glucose and alpha-D-galactose-1-phosphate in the second step of galactose catabolism; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10993714]; GO_function: GO:0008108 - UDP-glucose:hexose-1-phosphate uridylyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0008108 - UDP-glucose:hexose-1-phosphate uridylyltransferase activity [Evidence IMP] [PMID 14158615]; GO_function: GO:0008108 - UDP-glucose:hexose-1-phosphate uridylyltransferase activity [Evidence IDA] [PMID 387754]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0033499 - galactose catabolic process via UDP-galactose [Evidence IMP] [PMID 14158615]; GO_process: GO:0033499 - galactose catabolic process via UDP-galactose [Evidence IDA] [PMID 387754]; GO_process: GO:0006012 - galactose metabolic process [Evidence IEA,IEA,IEA]
codon start: 1
product: UDP-glucose:hexose-1-phosphate uridylyltransferase
translation: MQWSEAHRRYNPLRKSWVLCSPHRTQRPWQGQQEKPQVEKRPEYDEKCYLCPGNTRAQGQANPKYEETFVFVNDFSAVKPRDTLPQADGSSAEESEEDELFRAEQATGKCVVICFNPRHDITLAQMTYPQVSGVINAWKKVYTDAVNNPEVRYCQIFENKGAAMGCSNPHPHGQAWTTNIIPEEPDIEHACLAEYAHNHNGKGLLEDYVAKELAILAKAESSGNHAQNRFVDVNDSFIAVIPFWATWPFEVLVVSRRKIGNITQLTEKEQTDFAHILRNVALRYDNLFQTSFPYSMGIHQSFAEPNIDPKSEPEHLHVHFYPPLLRSATVRKFLVGFEMLGMPQRDVTPESAAAQLRAVDGNATVFV
SIO_010081: AWJ20_4846
subclass of: SO_0000673
so part of: AWJ20_4846
location: complement(join(709547..709550,709779..709792,710159..711244))
location: region:709547-711244:-1
so has part: feature:710159-711244:-1:exon
so has part: feature:709779-709792:-1:exon
so has part: feature:709547-709550:-1:exon

XP_018736372.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:710159-711244:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:709779-709792:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:709547-709550:-1:exon

AWJ20_4847
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SLD5
locus tag: AWJ20_4847
so part of: sequence
location: complement(<711932..>712681)
location: region:711932-712681:-1
so has part: feature:711932-712681:-1:exon
subclass of: SO_0000010

30037023
type: Gene
SIO_000068: ncbigene

position:711932:-1
position: 711932
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:712681:-1
position: 712681
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:711932-712681:-1:exon

AWJ20_4847
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SLD5
locus tag: AWJ20_4847
product: Sld5p
transcript id: XM_018881945.1
SIO_010081: AWJ20_4847
subclass of: SO_0000673
so part of: AWJ20_4847
location: complement(<711932..>712681)
location: region:711932-712681:-1
so has part: feature:711932-712681:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:711932-712681:-1:exon

AWJ20_4847
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SLD5
locus tag: AWJ20_4847
inference: similar to AA sequence:KEGG_Orthology:K10735
note: Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p); complex is localized to DNA replication origins and implicated in assembly of the DNA replication machinery; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IGI,IMP] [PMID 12730134]; GO_component: GO:0000811 - GINS complex [Evidence IPI] [PMID 12730134]; GO_component: GO:0000811 - GINS complex [Evidence IPI] [PMID 12768207]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IMP] [PMID 12730134]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IMP] [PMID 12768207]; GO_process: GO:0000727 - double-strand break repair via break-induced replication [Evidence IMP] [PMID 20516198]
codon start: 1
product: Sld5p
translation: MNDTTDIDDIINNLRDDDISNLHSGIEIQSSLDDSFQQTDLTDLKKAWLAERMSPDILAFQTSLIDRLMDRIRIQAAYIEENSMADFHNSGDIKMKLLIVESELERIKFLVRGYLRTRLSKIDKYTIYIIQSGENQQEGNADQFDLRLLLSPQEIQYMERHHRILLNLYNTQFLSALPAQLQRLDDSSGGISMVEEPDLDKPVFIRVLETVERPIRVGLDEITLEKGNIYVLRYSAISKYLIGGEVELI
SIO_010081: AWJ20_4847
subclass of: SO_0000673
so part of: AWJ20_4847
location: complement(711932..712681)
location: region:711932-712681:-1
so has part: feature:711932-712681:-1:exon

XP_018736373.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:711932-712681:-1:exon

AWJ20_4848
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4848
so part of: sequence
location: <713518..>715242
location: region:713518-715242:1
so has part: feature:713518-715242:1:exon
subclass of: SO_0000010

30037024
type: Gene
SIO_000068: ncbigene

position:713518:1
position: 713518
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:715242:1
position: 715242
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:713518-715242:1:exon

AWJ20_4848
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4848
product: hypothetical protein
transcript id: XM_018881946.1
SIO_010081: AWJ20_4848
subclass of: SO_0000673
so part of: AWJ20_4848
location: <713518..>715242
location: region:713518-715242:1
so has part: feature:713518-715242:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:713518-715242:1:exon

AWJ20_4848
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4848
inference: similar to AA sequence:KEGG_Orthology:K10415
codon start: 1
product: hypothetical protein
translation: MKDAGTDTSLDMVVTEVFEIAPKSTTISYNKEVQTSEDWASGTNTKSASGIEDYDEFDYSVNMAQRKQLEDKIRTELEELYKKENEEVLKNNRTLSNDEPGLNANGTPDVSRPTILSDKEASQISARQDFENFWSQSWKVINRAAEEDTNYNILRNYAESQNSDAQQQSRNSLTEITHLYSKDSVGRAVTYIDWSPKFPELIAAAYTEKSSDPHATKGLIQIFNLHAPNQPEYTLTAQSDILVVKFSPFDSNLIFGAAYNGQVLAWDLRSKGSRPLLSSQLSGKAHTHPVYSLEIIGTQNAYTLITASTDGTVCTWTPDMLAKPQEKITLQTNSSSLRNDEAAPTSLAIPTRDQAQFLIGTEEGAIYQCYRFGQAGSRPGIDHRKSYRGHTGPVTSVDLHPSSGPVDFGNYLLSSGNDWSIKIWLVSLISSHGSNLSSTASSAPANRGEIIRPILDIKRDDVVYDISWNPNHPSIFAAVDGTGHVEVWNLLTDTEVPVVRAKPSNIEKNIVGSNYLKRPLNRVSWEKTSEARRLAVGGLNGSITILELDTTLIGSSPKPEHWAQLKRLFEQLES
SIO_010081: AWJ20_4848
subclass of: SO_0000673
so part of: AWJ20_4848
location: 713518..715242
location: region:713518-715242:1
so has part: feature:713518-715242:1:exon

XP_018736374.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:713518-715242:1:exon

AWJ20_4849
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4849
so part of: sequence
location: complement(<715649..>717979)
location: region:715649-717979:-1
so has part: feature:715649-717979:-1:exon
subclass of: SO_0000010

30037025
type: Gene
SIO_000068: ncbigene

position:715649:-1
position: 715649
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:717979:-1
position: 717979
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:715649-717979:-1:exon

AWJ20_4849
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4849
product: hypothetical protein
transcript id: XM_018881947.1
SIO_010081: AWJ20_4849
subclass of: SO_0000673
so part of: AWJ20_4849
location: complement(<715649..>717979)
location: region:715649-717979:-1
so has part: feature:715649-717979:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:715649-717979:-1:exon

AWJ20_4849
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4849
codon start: 1
product: hypothetical protein
translation: MVKQPYRGVRPRPLKLNRIGRSAFDDIHLLGGIGHKWRIGGDSGNPVNSGSKSGYSSDPESESSRSSWPYFNRSLFKVSSPTAALNMIPKWMKAVKLSVPSSSRAYGWWHTSNWHPLLNHKPHASHSMPDPIFESVWSCKKPQVTYHEFKYHPRTGGKGRSAIWLKYNISNESSLRNLREEEERYQKEQESTSNETDYDAIDLISLKKKVRTDESQNAAYSVEPVDTINASETPLSTRGGGSRKAEMASGESSKSGGGLGSGDNSGGDGRGKKQPPPVTLQSDPTAQLSKKQRKRARAAAAAAQASNNFTAKDIDETLEASTDELYQTGADVESKPLSQLRKPIQVPTESMEQPEVSSWSSESVPVEPLANETVNNGVETDALSSDSINPITSSTVSDPLHDNSSASDRLSTGQVYDSTTLSESESNESPEISSKVDEDETSHVSTNGTTGFPLHTASVDATENITLPTEPVSPVEHKSESTGGFDLHANAYPVDNEKNIHDTFSPLSGPDSQPSGPHRIDTVTAGDLLEGLQLKGKYKDSTKDFERLLSLVETEKHDSEKRKSFTNPVRITREGESPSDVENLFNEPKPISTFAPPLEMQDIHHLQDALKEAKADEEKHAQEMFRIENAMDYTKSVSSKRPRSIESGNFFTPVNRTIASATHRKPGAAYEYIIVTPNQKFIRTRTLPFKDDNPRRDLFSALSEMSDPALYVKTIAKLEKANWKCIGGGGPGRLLVFEREYNPIKRFSKLLLKLTGSFLGLVSLAAAVAVMIESPF
SIO_010081: AWJ20_4849
subclass of: SO_0000673
so part of: AWJ20_4849
location: complement(715649..717979)
location: region:715649-717979:-1
so has part: feature:715649-717979:-1:exon

XP_018736375.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:715649-717979:-1:exon

AWJ20_4850
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MUM2
locus tag: AWJ20_4850
so part of: sequence
location: <719318..>720154
location: region:719318-720154:1
so has part: feature:719318-720154:1:exon
subclass of: SO_0000010

30037027
type: Gene
SIO_000068: ncbigene

position:719318:1
position: 719318
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:720154:1
position: 720154
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:719318-720154:1:exon

AWJ20_4850
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MUM2
locus tag: AWJ20_4850
product: Mum2p
transcript id: XM_018881949.1
SIO_010081: AWJ20_4850
subclass of: SO_0000673
so part of: AWJ20_4850
location: <719318..>720154
location: region:719318-720154:1
so has part: feature:719318-720154:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:719318-720154:1:exon

AWJ20_4850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MUM2
locus tag: AWJ20_4850
note: Protein essential for meiotic DNA replication and sporulation; cytoplasmic protein; subunit of the MIS complex which controls mRNA methylation during during the induction of sporulation; also interacts with Orc2p, which is a component of the origin recognition complex; GO_component: GO:0036396 - MIS complex [Evidence IDA,IPI] [PMID 22685417]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 22685417]; GO_process: GO:0080009 - mRNA methylation [Evidence IGI,IMP] [PMID 22685417]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IMP] [PMID 22685417]; GO_process: GO:2000221 - negative regulation of pseudohyphal growth [Evidence IMP] [PMID 22685417]; GO_process: GO:0006279 - premeiotic DNA replication [Evidence IGI] [PMID 11238403]; GO_process: GO:0006279 - premeiotic DNA replication [Evidence IMP] [PMID 9504908]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]
codon start: 1
product: Mum2p
translation: MNAQLSRYTAGNQAGQGTNSQTGQTGQGQNNGHQGKMISTGGNVNTSNQYSSTNFYNSLTPKSSFDSIGSLHSLGSNVSSVPVGLASNPWVSGSFGSFSIPPPLPPSSGRSENSNSYHDSFNFAPADLSFVNDIDPPNEYSSSPSLNLSNAQKQPFKTLNNKPRGNHNNNSLGNSQFSNASTHQLHLDPVIENEFRNMAKSLEEKEALISDLKLQLESLVTAVAVCGSVNDKAVQEVISEMKMDATEIAHRITIRLKTLKSENEQLGVSNIIIRFTVC
SIO_010081: AWJ20_4850
subclass of: SO_0000673
so part of: AWJ20_4850
location: 719318..720154
location: region:719318-720154:1
so has part: feature:719318-720154:1:exon

XP_018736376.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:719318-720154:1:exon

AWJ20_4851
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4851
so part of: sequence
location: complement(<720467..>722287)
location: region:720467-722287:-1
so has part: feature:720467-722287:-1:exon
subclass of: SO_0000010

30037028
type: Gene
SIO_000068: ncbigene

position:720467:-1
position: 720467
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:722287:-1
position: 722287
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:720467-722287:-1:exon

AWJ20_4851
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4851
product: hypothetical protein
transcript id: XM_018881950.1
SIO_010081: AWJ20_4851
subclass of: SO_0000673
so part of: AWJ20_4851
location: complement(<720467..>722287)
location: region:720467-722287:-1
so has part: feature:720467-722287:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:720467-722287:-1:exon

AWJ20_4851
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4851
codon start: 1
product: hypothetical protein
translation: MEGLEFASNFSFNRCSPQLSASGEYVAYVYGSRLVIRFTDTLATKNVIQLPREFAQNIFLIRWDGCLKHSPEQRVAVATRNEIRTFSIKKHSTAGESMAPDNLAGHSVILSGKDEIANVQWLSADTPNNIGQIVRLAVFTRFHLDVKIWSSNGVEMEIRSPKFARLVSETPNLSMDGLSNRFSVVSRFTTYDVLYNCRINATVADNELVTPLSEALDIVDLKWSPSGLWLAAIDNPIAGYDVHLWAADGTFVRTFHDIPGFISPNVNTTPSSRRKEDMLRDTPSAAFPTCLEWVNVFSDPGVRDLELLLVGDSENRVSLFDIKTCQPTSILIHGSVYKNCCLWEEYLSPDSHQFEYRMVRLPFIFTNSGANTSNSKMNEHERNIISGVISMDISDNGQLLATRVHSYPNLVWIWSIANPQSPDLLAIISHSYTIKSITWKSESMTPLLLITPLDSKSIGLWSYDSQLEPKIIDLSSQFESSIMGVSIIEKPDSNEILRLLAWTKNSFSIGGSVQDENDTGDAEDEGQDANDMVTKQQNSKYTSYQRSSVPRLNHHQSSRMELLSPTLPQDDDTHVKLLADIVQQSEWIQDTNSVPVEDTFHNKIKH
SIO_010081: AWJ20_4851
subclass of: SO_0000673
so part of: AWJ20_4851
location: complement(720467..722287)
location: region:720467-722287:-1
so has part: feature:720467-722287:-1:exon

XP_018736377.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:720467-722287:-1:exon

AWJ20_4852
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ARO3
locus tag: AWJ20_4852
so part of: sequence
location: complement(<722631..>723776)
location: region:722631-723776:-1
so has part: feature:722631-723776:-1:exon
subclass of: SO_0000010

30037029
type: Gene
SIO_000068: ncbigene

position:722631:-1
position: 722631
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:723776:-1
position: 723776
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:722631-723776:-1:exon

AWJ20_4852
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ARO3
locus tag: AWJ20_4852
product: 3-deoxy-7-phosphoheptulonate synthase ARO3
transcript id: XM_018881951.1
SIO_010081: AWJ20_4852
subclass of: SO_0000673
so part of: AWJ20_4852
location: complement(<722631..>723776)
location: region:722631-723776:-1
so has part: feature:722631-723776:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:722631-723776:-1:exon

AWJ20_4852
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ARO3
locus tag: AWJ20_4852
inference: similar to AA sequence:KEGG_Orthology:K01626
note: 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) synthase; catalyzes the first step in aromatic amino acid biosynthesis and is feedback-inhibited by phenylalanine or high concentration of tyrosine or tryptophan; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate synthase activity [Evidence IEA,IEA]; GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate synthase activity [Evidence IDA] [PMID 2880280]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009423 - chorismate biosynthetic process [Evidence IEA]; GO_process: GO:0009423 - chorismate biosynthetic process [Evidence TAS] [PMID 1943992]; GO_process: GO:0006950 - response to stress [Evidence IEA]
codon start: 1
product: 3-deoxy-7-phosphoheptulonate synthase ARO3
translation: MFLDNTHLGDRSRLEDWRIRGYNPLVSPDLLQHDIPLTTKSKENIVKGREDTCKILDGKDDRLLVVVGPCSIHDPKAALEYCQKLASVVPELSSDLHIVMRAYLEKPRTTVGWKGLINDPDIDGSFQINKGLRISRELFVKLTEQLPIAGEMLDTISPQFLSDLFSVGAIGARTTESQLHRELASGLSFPIGFKNGTDGGLDVAVDAVRAAANPHHFLSVTKPGVVAIVGTDGNDDSFVILRGGKNGTNFDAASVAAAKEKLEKAGLVTDSRPGPRIMIDCSHGNSSKNHNNQPIVAEAVAEQIRNGETGICGVMIESNINAGRQNVPPAEEGGKDALKYGVSITDACIDWETTYKTLKNLAEAVRTRREANSHKKAKIDA
SIO_010081: AWJ20_4852
subclass of: SO_0000673
so part of: AWJ20_4852
location: complement(722631..723776)
location: region:722631-723776:-1
so has part: feature:722631-723776:-1:exon

XP_018736378.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:722631-723776:-1:exon

AWJ20_4853
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4853
so part of: sequence
location: <725223..>726275
location: region:725223-726275:1
so has part: feature:725223-726275:1:exon
subclass of: SO_0000010

30037030
type: Gene
SIO_000068: ncbigene

position:725223:1
position: 725223
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:726275:1
position: 726275
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:725223-726275:1:exon

AWJ20_4853
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4853
product: hypothetical protein
transcript id: XM_018881952.1
SIO_010081: AWJ20_4853
subclass of: SO_0000673
so part of: AWJ20_4853
location: <725223..>726275
location: region:725223-726275:1
so has part: feature:725223-726275:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:725223-726275:1:exon

AWJ20_4853
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4853
inference: similar to AA sequence:KEGG_Orthology:K16576
codon start: 1
product: hypothetical protein
translation: MSSSQSRSVPLVNRSPAKRPVSSTPRSPLASPNKSPSKSRSGRLSRAVSRLSVSDSIDIFESPSVLLEISQTVVKAGFPGDAVPQVTYHTDIPLWNRPDDESADIPPVRLYLLNVLQEILIQSLLVTPKSISVFVLESPLISNTFKQLIGQVLLLDLQVKSVTFQPLAVNAVVGAGASCGLVIDLGWDEAAMIPVYDLRELSSKARFTTRSTKKLFHKYRDTALAESKPFTTWREFRHQTLASTFSTSEITELAQELFIKQNEPYPDDDNLSLPLVISKLIGSLDANLRGPCSENIVFTGGLQLPPEIYISIINEVQTSWPKARLIHSIGSWAGASAYLSSIIAYHSQLH
SIO_010081: AWJ20_4853
subclass of: SO_0000673
so part of: AWJ20_4853
location: 725223..726275
location: region:725223-726275:1
so has part: feature:725223-726275:1:exon

XP_018736379.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:725223-726275:1:exon

AWJ20_4854
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PWP1
locus tag: AWJ20_4854
so part of: sequence
location: complement(<726495..>728198)
location: region:726495-728198:-1
so has part: feature:726495-728198:-1:exon
subclass of: SO_0000010

30037031
type: Gene
SIO_000068: ncbigene

position:726495:-1
position: 726495
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:728198:-1
position: 728198
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:726495-728198:-1:exon

AWJ20_4854
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PWP1
locus tag: AWJ20_4854
product: Pwp1p
transcript id: XM_018881953.1
SIO_010081: AWJ20_4854
subclass of: SO_0000673
so part of: AWJ20_4854
location: complement(<726495..>728198)
location: region:726495-728198:-1
so has part: feature:726495-728198:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:726495-728198:-1:exon

AWJ20_4854
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PWP1
locus tag: AWJ20_4854
inference: similar to AA sequence:KEGG_Orthology:K14791
note: Protein with WD-40 repeats involved in rRNA processing; associates with trans-acting ribosome biogenesis factors; similar to beta-transducin superfamily; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IPI] [PMID 15588312]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006364 - rRNA processing [Evidence IMP,ISS] [PMID 15588312]
codon start: 1
product: Pwp1p
translation: MISATSWVPRGFAAEFPVKYDLNDEEVERISHLAKLQLKDAQEALEEAEAEGADVNADADAEVTEAADENVDVAVKSEKKSVKFNASNEDGDAEVEEDDDLKEYDLENYDNDEDEGEGEKMGMFNGVQSLAYYEPGEKDPYITLPNAEDEDEEREELQILPSDNLILATKTEDDISYLEVYVYNENSESKNDEEDAIDEPTLYVHHDLMLPSFPLCVEWIGYQAGNKVQASGPDRVGNFAAIGTFEPEIEVWNLDVVDSAYPDLILGQRPDNANDHLSVGPSKKSKKKQKKINSKLRNDQYHVDAVLSLSANKLHRNLLASGSADTTVKLWDLNNGVCAKSFQFHDNKVSTVAFNPVEGSILLSGGYDATAIVSDLRVSGSEGQRKWKVDGDIEGGLWASNGNEFYISTEHGRIHKFDARQEGKSLWTLQAHDDGITSFDVNKFIDGYMVTASTDKSTKLWNLSPASGPSLILSRDLDIGKVFSVGFAPDKEAVGHVVAAGSQGIVRVWDTLSNRTVRGSFGKQVSTLRKESAKEVIVGVTEDDEEEDDDEAGADAAENGGDSDEEM
SIO_010081: AWJ20_4854
subclass of: SO_0000673
so part of: AWJ20_4854
location: complement(726495..728198)
location: region:726495-728198:-1
so has part: feature:726495-728198:-1:exon

XP_018736380.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:726495-728198:-1:exon

AWJ20_4855
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_4855
so part of: sequence
location: <730157..>732340
location: region:730157-732340:1
so has part: feature:730157-732340:1:exon
subclass of: SO_0000010

30037032
type: Gene
SIO_000068: ncbigene

position:730157:1
position: 730157
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:732340:1
position: 732340
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:730157-732340:1:exon

AWJ20_4855
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_4855
product: 1-phosphatidylinositol-4-phosphate 5-kinase
transcript id: XM_018881954.1
SIO_010081: AWJ20_4855
subclass of: SO_0000673
so part of: AWJ20_4855
location: <730157..>732340
location: region:730157-732340:1
so has part: feature:730157-732340:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:730157-732340:1:exon

AWJ20_4855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_4855
inference: similar to AA sequence:KEGG_Orthology:K00889
note: Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]
codon start: 1
product: 1-phosphatidylinositol-4-phosphate 5-kinase
translation: MGLRKLCRKFRHPFERDESVITTHHSFNDGVVASKSMPPDHLRTRQNSSVEGIRSSYPNCQAFLAKYGTKDQAPRDNSRIGIIENPRNSYPNCEKLAYYSKRSACGNLAQTGSTSRPYRHKDFDLIKTPQSPTGSIDSKKTLNPETFWPTTVVNHLIFEQNGYEEFIAKGMNSDLGTKGNNSEFEMDSTHSSGAENLHLIWSTPSQVSLVTVDQSSTSSVSTVCSEEIVHQNVSQITEQVIKASNASDSLDSEETLHSLVNHGDKPVCEVVTMPSNNDTDGSCTSESSQNFSELTKEESTSDKPTSPPVRPVRPRVCPFLLQPEIDEMIAKERGELVTSSVLRCGQSNLSDTYELPSATSASILEAATREYPPRFGSVDAALNPEVVKFDEDKKTMLMKRAQAKIDSLKRKLGLKSNPVAPKKYLIFLGIYSSLVENPPIIHPEVRVQFFLPGHKTFNVSPDAVVQCHFPSVYENIRTLRGSYFPEYLNSFLFDHHALHVKSPGKTDSDFYFTADRKYVIKTIQRKEHNTLMGESFMKDYYSHIQENPESLIPTYLGHFTLRTLGKDTHFVVMKNLVGTDVDTVYDLKGIKHRKRSEATSAMNGRDINKDGDWVENQEIIFMGKDKRKKLLTQLASDVALLEKYNIMEYSLLVGIHKDPQSSEIRHAMGMIDSLSPYGVSKALKSNISRIVHHHSSLNIINPRDYGKRFLNFIGSTVVLERGRPMTY
SIO_010081: AWJ20_4855
subclass of: SO_0000673
so part of: AWJ20_4855
location: 730157..732340
location: region:730157-732340:1
so has part: feature:730157-732340:1:exon

XP_018736381.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:730157-732340:1:exon

AWJ20_4856
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: NMT1
locus tag: AWJ20_4856
so part of: sequence
location: <734400..>735878
location: region:734400-735878:1
so has part: feature:734400-735878:1:exon
subclass of: SO_0000010

30037033
type: Gene
SIO_000068: ncbigene

position:734400:1
position: 734400
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:735878:1
position: 735878
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:734400-735878:1:exon

AWJ20_4856
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: NMT1
locus tag: AWJ20_4856
product: glycylpeptide N-tetradecanoyltransferase NMT1
transcript id: XM_018881955.1
SIO_010081: AWJ20_4856
subclass of: SO_0000673
so part of: AWJ20_4856
location: <734400..>735878
location: region:734400-735878:1
so has part: feature:734400-735878:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:734400-735878:1:exon

AWJ20_4856
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: NMT1
locus tag: AWJ20_4856
inference: similar to AA sequence:KEGG_Orthology:K00671
note: N-myristoyl transferase; catalyzes the cotranslational, covalent attachment of myristic acid to the N-terminal glycine residue of several proteins involved in cellular growth and signal transduction; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 1544917]; GO_function: GO:0004379 - glycylpeptide N-tetradecanoyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004379 - glycylpeptide N-tetradecanoyltransferase activity [Evidence IMP] [PMID 8955162]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0018008 - N-terminal peptidyl-glycine N-myristoylation [Evidence TAS] [PMID 10570244]; GO_process: GO:0006499 - N-terminal protein myristoylation [Evidence IEA]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 10921902]
codon start: 1
product: glycylpeptide N-tetradecanoyltransferase NMT1
translation: MSGSEKTESREESAGASQPSEVVAKGNAGSNSGKPVTAVSSADTKPPKTTGMRLEDLFKLLSMPDPKAEPKPMDEYKFWKTQPVTKFDDAIDAEGPIDSKTVDDVSKEPSPLPAGFEWSTIDISQPDKVQEIYDLLYANYIEDDDETFRFKYSPAFLDWGLKPPGWVKDWNVGVRVKDTGKLIGFISGIPGTLRLRTTNPDIKVAEINFLCVHKKLRSKRLAPVLIREVTRRVNLTGVWQALYTAGALLPSPITTARYYHRSINWPKLHDVGFTGLPSNSTPAKQVAKYALPSKPTLETLRPMTVEDVSEVHELLDTFLNRYELVPKFTEQETAHWLLDSVHASEHDKVIYSYVVTDSENKITDFVSFYGLESTVLGNSKYDSINVAYLFYYATTAGLGDNKSSDNESVLKSRLFVLIQNALILAKAKNFDVFNALSVQDNALFLEDLKFGAGDGFLNYYLFNYKAFPIHGGISKREKSLERKPGGIGVIMF
SIO_010081: AWJ20_4856
subclass of: SO_0000673
so part of: AWJ20_4856
location: 734400..735878
location: region:734400-735878:1
so has part: feature:734400-735878:1:exon

XP_018736382.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:734400-735878:1:exon

AWJ20_4857
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: COX5A
locus tag: AWJ20_4857
so part of: sequence
location: complement(<736235..>736729)
location: region:736235-736729:-1
so has part: feature:736235-736729:-1:exon
subclass of: SO_0000010

30037034
type: Gene
SIO_000068: ncbigene

position:736235:-1
position: 736235
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:736729:-1
position: 736729
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:736235-736729:-1:exon

AWJ20_4857
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: COX5A
locus tag: AWJ20_4857
product: cytochrome c oxidase subunit Va
transcript id: XM_018881956.1
SIO_010081: AWJ20_4857
subclass of: SO_0000673
so part of: AWJ20_4857
location: complement(<736235..>736729)
location: region:736235-736729:-1
so has part: feature:736235-736729:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:736235-736729:-1:exon

AWJ20_4857
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: COX5A
locus tag: AWJ20_4857
inference: similar to AA sequence:KEGG_Orthology:K02263
note: Subunit Va of cytochrome c oxidase; cytochrome c oxidase is the terminal member of the mitochondrial inner membrane electron transport chain; Cox5Ap is predominantly expressed during aerobic growth while its isoform Vb (Cox5Bp) is expressed during anaerobic growth; COX5A has a paralog, COX5B, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005751 - mitochondrial respiratory chain complex IV [Evidence IPI] [PMID 1331058]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004129 - cytochrome-c oxidase activity [Evidence IEA,IEA]; GO_function: GO:0004129 - cytochrome-c oxidase activity [Evidence IMP] [PMID 1847916]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:1902600 - hydrogen ion transmembrane transport [Evidence IEA,IEA]; GO_process: GO:0006123 - mitochondrial electron transport, cytochrome c to oxygen [Evidence IDA] [PMID 1331058]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]
codon start: 1
product: cytochrome c oxidase subunit Va
translation: MLRGFRSVARPSLARAAAPVARRQAHAISNPTLVNLESRWEAMSEEERSDIVAQLAERQKGSWAELTVAEKRAAWYISYGAWGPRKPIHAPGDAGRIVKGIAAVILGAATLFTTIRLLSPSLPHTMNKEWQEAANEKLAEKNANPFTGYNQVQSPSKGPSDDDE
SIO_010081: AWJ20_4857
subclass of: SO_0000673
so part of: AWJ20_4857
location: complement(736235..736729)
location: region:736235-736729:-1
so has part: feature:736235-736729:-1:exon

XP_018736383.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:736235-736729:-1:exon

AWJ20_4858
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MUP1
locus tag: AWJ20_4858
so part of: sequence
location: <740999..>742726
location: region:740999-742726:1
so has part: feature:740999-742726:1:exon
subclass of: SO_0000010

30037035
type: Gene
SIO_000068: ncbigene

position:740999:1
position: 740999
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:742726:1
position: 742726
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:740999-742726:1:exon

AWJ20_4858
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MUP1
locus tag: AWJ20_4858
product: Mup1p
transcript id: XM_018881957.1
SIO_010081: AWJ20_4858
subclass of: SO_0000673
so part of: AWJ20_4858
location: <740999..>742726
location: region:740999-742726:1
so has part: feature:740999-742726:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:740999-742726:1:exon

AWJ20_4858
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MUP1
locus tag: AWJ20_4858
note: High affinity methionine permease; integral membrane protein with 13 putative membrane-spanning regions; also involved in cysteine uptake; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence ISS] [PMID 8893857]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0000102 - L-methionine secondary active transmembrane transporter activity [Evidence IDA] [PMID 8893857]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0042883 - cysteine transport [Evidence IDA] [PMID 11330701]; GO_process: GO:0044690 - methionine import [Evidence IGI,IMP] [PMID 8893857]; GO_process: GO:0015821 - methionine transport [Evidence IDA] [PMID 11330701]; GO_process: GO:0000101 - sulfur amino acid transport [Evidence IMP] [PMID 8893857]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Mup1p
translation: MASETSSLLSRQTGSQQHLEVGAVSNHANINRGNNSNASGNSSDSGKGNGNSNGKLYREDHMEEEFDTQTIASYDSVYNSDIDNGVPFDPEHGHAHRKTLGIPTATFLMLNKMIGTGIFSIPSSVYELTGSVGWSLVLWIFGGLIAYSGLNVYLEFGVEIPKSGSEKNYLERVFRRPKHLALVTFAVSYLCLSHSTSNSYAFGLYIQLAAGVKETSESYTRVIAVITVLSCILLHGIFPRAGRYLFNALGFFKVVVLGIITMSGFLVLIGAIKLDNPPDNFTNMFQNDGMGGDVYSISIALLRVFFSYRGWDNCNTVMGEIRNPAHTMGIAGPLAIGMVMFFYCFCNIAYFAVVSKQEIADSGVIVAGKFCQIIFGDSVAARVLPFFIALSNLGNILVVSYAASRVTAELGKHYLIPFSPIISSYKPFNTPFVGLLMHASLTVILLVVPPPGRVYEFVVDLSTYPITFISFSVTAGLIYLQFNRVKENWGNKPGSYHAPLYHSVAYLLTNLFLIIVPWIPPPYELKPGSFPYYAVPLGGIIIMTAGPLYWLHWRNSENAARLDAEIEKGLYLQTS
SIO_010081: AWJ20_4858
subclass of: SO_0000673
so part of: AWJ20_4858
location: 740999..742726
location: region:740999-742726:1
so has part: feature:740999-742726:1:exon

XP_018736384.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:740999-742726:1:exon

AWJ20_4859
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PSK2
locus tag: AWJ20_4859
so part of: sequence
location: complement(<742984..>745986)
location: region:742984-745986:-1
so has part: feature:742984-745986:-1:exon
subclass of: SO_0000010

30037036
type: Gene
SIO_000068: ncbigene

position:742984:-1
position: 742984
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:745986:-1
position: 745986
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:742984-745986:-1:exon

AWJ20_4859
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PSK2
locus tag: AWJ20_4859
product: serine/threonine protein kinase PSK2
transcript id: XM_018881958.1
SIO_010081: AWJ20_4859
subclass of: SO_0000673
so part of: AWJ20_4859
location: complement(<742984..>745986)
location: region:742984-745986:-1
so has part: feature:742984-745986:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:742984-745986:-1:exon

AWJ20_4859
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PSK2
locus tag: AWJ20_4859
inference: similar to AA sequence:KEGG_Orthology:K08286
codon start: 1
product: serine/threonine protein kinase PSK2
translation: MLNELRKTLIDNQAHSSQQQLHQQHQQQQQQKQPNILSLNQLLMADQAFGSLHGSASTATLSILGNLTSSSLKTAANGGQLNSNLVNEHLDAFSALLDEAAELLPVPIDSHGGAGWSSTMPRSVSNPPLILQGSPVVNTTGSIAAIGSGVTGGATPSIGATSGSTDLRAVLDLESAKKKRVAAGLGESSPQLQNQLLSALSMAYIDMPRPLVFQRGHSTVNFASITNSVSTLNLAILPSSAQGNNSSSVNITPVQPISSKYASNYSVFTTEFKSPYKILSANDMACLLLGLSQVDLKKRSIFDILEDNYGQYVENIINNGLNGGQPKSVFICGHILPIVKSNGIHSLASFWVRSHNGFISWVLNEVIADKIYLKVSTLDWKLLSITGDNYKIFTPQLTLPEDEPKLREMSLKDLIPGLSDIDVESLEKWNADFPGYKYHTVQAHSANMPCFAKLKSYDDFEATAEISITSMPLMAGVIVIDRWCTVVDYNEYFVGTLLGYGRDSNKVLRGAPVTSIIPRFTDYLEKVFASYQLGTDGNPLPIGLVIPEQAFRKVAALDPNQTNDGDLPRLYPVTDICAVTLQGSHIHVDIQLRVVSNTHFALWVSYSRDIQGLHSEYEMPSQLSLLDNVLEYRANLKKSGSGGGSSSNSRSSTAGSGESVSAESNTLTPMDSEDSLVTPKAAEQSDAQLSSSETNDKNGHETDGSKPPAKKNQAVPDALSTTNRRPPVEIGARRRQKSLKDFNIVQKLGEGAYGKVLLVQYPVEPKDVVVLKCVIKERILVDTWTRDRKLGTIPNEIKIMNNLNALPHKNIVRLIDFFEDDLYYHIEMERHGNPGTDLFDLIELKPDMPVEECRQMFKQVTSAVVHLHTHGIIHRDIKDENIIVDEHGDVKLIDFGSAALTRQGPFDVFVGTIDYAAPEVLSGMPYEGKPQDVWALGILLYTIMYKENPFYNVDEIMEGDLRLPYIPSESCVDLIQKILERDIRNRPNIHTIWEHEWLQN
SIO_010081: AWJ20_4859
subclass of: SO_0000673
so part of: AWJ20_4859
location: complement(742984..745986)
location: region:742984-745986:-1
so has part: feature:742984-745986:-1:exon

XP_018736385.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:742984-745986:-1:exon

AWJ20_4860
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MON2
locus tag: AWJ20_4860
so part of: sequence
location: <752760..>756962
location: region:752760-756962:1
so has part: feature:752760-756962:1:exon
subclass of: SO_0000010

30037038
type: Gene
SIO_000068: ncbigene

position:752760:1
position: 752760
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:756962:1
position: 756962
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:752760-756962:1:exon

AWJ20_4860
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MON2
locus tag: AWJ20_4860
product: Mon2p
transcript id: XM_018881960.1
SIO_010081: AWJ20_4860
subclass of: SO_0000673
so part of: AWJ20_4860
location: <752760..>756962
location: region:752760-756962:1
so has part: feature:752760-756962:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:752760-756962:1:exon

AWJ20_4860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MON2
locus tag: AWJ20_4860
note: Protein with a role in endocytosis and vacuole integrity; peripheral membrane protein; interacts with and negatively regulates Arl1p; localizes to the endosome; member of the Sec7p family of proteins; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005829 - cytosol [Evidence TAS] [PMID 12052896]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 12052896]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 12052896]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 16301316]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IGI,IPI,ISS] [PMID 12052896]; GO_process: GO:0006895 - Golgi to endosome transport [Evidence IMP] [PMID 16301316]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 12052896]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 12134085]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IMP,ISS] [PMID 11169758]
codon start: 1
product: Mon2p
translation: MIFTDLCNLTEKQKPVFLKKFNHLPETFGLELLESILTNHSDIFLKHVEFAYILRTRVVPLLLRAFSEKREFSVTVRVTRILYLLLRRQLPILKVEGEVILSLLTHMVDEDAAPYWKRLLCMEVFQGVCSEFSLVQEIYQEYDAQEGTRRAIIKCLIAAFGKISLERKDVIGYGPVSMPFRLPDNAATASTSGLHDENDPVDYSDVVGISLKTSVARVPCIDLLDKSEPPIVPDTYLYYLVLVCINSLCEGLTRKVFTQSPSSSSSNADMPVKFIKECWHELLSCYNTFFHATIDIDLYHSLVRSVQKLTHSAGFLDISEPMDAFMSLIGSFSVLVLEDVDGGRKSASGPSSSSSPSVAATATSMARNLLSVESIVGTLGSIREHQRSTSNAGLPQNTSASPAPTHPPTNPGGQNTAGRSPGSPTSRNILCFRALLNLAHSLGPKLSTSWDIVFRTIQLADSLANGSGKKRARQVQGSQVFSQLSEFSAVDTSFRRLLDSSKEFSESALLDMIASICRISEATLGIAKPGLSGDLFFALDLLREIGNTNMNRLVSSSDKTWPKLTDHLLKVIDTRSVEVLARSHSADVLNDLITKASTAAVTSSTVNSDAQRKVISTLKSEIDRVVKVQIPSEDSSIASTESDIHVSAIDTLNKVLDLCGGKFIDGWDLVFEIIDTVFTPLSSTGSSSSLSSMAVGSSGTKEIDRASRLVKSGFESMTLICNDFLIVLPEKCLINLVSTLSKFSKQESDLNISFTSISFFWTVSDHLRNVLLEKGAAHNDFKSPISDSEKLSEVASNGEFPLNIFALWTMSLLRLAITVGDTRAQVRNGSIQILFRILDSNGSTLPVGVWKTVQTIVTPVVMKVRPPATNDKDVIASWTETISLILNGFSSLYSSFIGQFVKQDDFSLLWKTLINYLQALIDTDASHLSLPVYTALNSVLVNFSKNQNISIPAESIEEAWEFWTSQHIPESPVDTKLTQEALTVFVQIHQPLQALSSQKDCSYEKIAKTIKILEQCTSFAHIPHLYSDRDHMSPLQTKSLERIESIDISDVKVASLILEILSGFVLLAFSTSETKSQDPSSKRPTYISLAAESLQLLKTKFSIVLRADYDELCNNQTIEKIFSSLLVLMEKKFDCPLLAEKKGNKPKQMWQTGTEIFLYILEALLDSNFDIQLSQEHITAIWDVVLKCGLAIITNKSTSSLQYEPEYEKFDHSSYIKFISLVERGSTTSDDFWSRLLRGIFESSAIYYRGKINKEYYRIGDPDVSVLRLVRDPFYGSTERPILKSRVNLSHLCLRELFRLSYKPPKNTALVVQQSSKFLNWRVAITLHQYVADQPLRGRMPMPNVTRDELVKLLNLVYEYHDDKSLSQQFELVCKCISVSNKDKEILDLLEKCLLTIHRK
SIO_010081: AWJ20_4860
subclass of: SO_0000673
so part of: AWJ20_4860
location: 752760..756962
location: region:752760-756962:1
so has part: feature:752760-756962:1:exon

XP_018736386.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:752760-756962:1:exon

AWJ20_4861
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CHS3
locus tag: AWJ20_4861
so part of: sequence
location: complement(<757091..>760846)
location: region:757091-760846:-1
so has part: feature:757091-760846:-1:exon
subclass of: SO_0000010

30037039
type: Gene
SIO_000068: ncbigene

position:757091:-1
position: 757091
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:760846:-1
position: 760846
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:757091-760846:-1:exon

AWJ20_4861
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CHS3
locus tag: AWJ20_4861
product: chitin synthase CHS3
transcript id: XM_018881961.1
SIO_010081: AWJ20_4861
subclass of: SO_0000673
so part of: AWJ20_4861
location: complement(<757091..>760846)
location: region:757091-760846:-1
so has part: feature:757091-760846:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:757091-760846:-1:exon

AWJ20_4861
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CHS3
locus tag: AWJ20_4861
inference: similar to AA sequence:KEGG_Orthology:K00698
note: Chitin synthase III; catalyzes the transfer of N-acetylglucosamine (GlcNAc) to chitin; required for synthesis of the majority of cell wall chitin, the chitin ring during bud emergence, and spore wall chitosan; contains overlapping di-leucine and di-acidic signals that mediate, respectively, intracellular trafficking by AP-1 and trafficking to plasma membrane by exomer complex; requires AP-3 complex for its intracellular retention; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 15470103]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 8909536]; GO_component: GO:0045009 - chitosome [Evidence IDA] [PMID 8970154]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9008706]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 15470103]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 9008706]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 15755916]; GO_function: GO:0004100 - chitin synthase activity [Evidence IEA]; GO_function: GO:0004100 - chitin synthase activity [Evidence IMP] [PMID 9760183]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IMP] [PMID 1293886]; GO_process: GO:0034221 - fungal-type cell wall chitin biosynthetic process [Evidence TAS] [PMID 7565410]
codon start: 1
product: chitin synthase CHS3
translation: MPKSSSNATIGQYEHDGIGRKRSLVRPERSRIDPDHPQYHYTQVAAQQAGRIQVQAAPSGADPAVYEHPHTRDIPMTDLSRSQSPNEKQEYDADGGDVYVDAKGGRNVYGLNDENGGEDNYEDNPYENGNKSYDDTNPYGVKNDMDHYGPSNLNDNDTDQVEPLNADDGPGSGKGGAREMSRKMSEKKAANKPLPGAKKPTSFWHAYCKIVTFWAPAPVLKLFGMRTKDRQMAWREKMGLITVIMYVAAFVAYLTFGFTTTVCNNNLVRLRNNEVNQGYLIINGRAYEMETFKHPEAVGIPKDTNILYPPVNAAGQDASFLFQNVNGNCRGLITPKADSKIPHDNKGNVAWYFPCQTFSQNGTTQPNFTFPHYNGYACHTSGKARQEYFGLKAAAEVYFTWDDIKNSTRKLVVYNGAVLDLSLLNFIDKSNLNYPSEFTMLQKDSTIMGADITQLMSHGRDGQIAKCLSEVIKVGYIDTENIGCIASQVVLYVSLVFIIGLVGIKFLFACYFKWFISGRQGAFYMDRKQLEKHNQEIEDWSNNIYSQGPIKKAPAPPRRKDRNSKFLKGNDKAINRQSVTMMSQIPVTSTSKLVPGGSIYGMNLGNNDASRNSFLLNNNASSDVVGDNSFLQGDTSYRGAGGLMLEDSYSDYPPNAMPAEQQSQVYSGGPGSYDYLVPQPPVDFQPFGFPLAHTICLVTAYSESIDGLRTTLDSIATTDYPNSHKLILIICDGIIKGSGNDMSTPEIALSMMTDFAEPMDQVKPYSYVSVVSGAKRHNMAKVYSGFYKYDDSTVDVAKQQRVPIMTIVKCGTPAEEGTAKPGNRGKRDSQIILMSFLQRVMFDERMTELEFEIFNGMYKITGIAPDFYEIVLMVDADTKVFPDSITHMVAQMVKDPEVMGLCGETKIANKTESWVSMIQVFEYFISHHQAKAFESVFGGVTCLPGCFCMYRIKAPKGDDGFWIPILANPDIVERYAENVVDTLHKKNLLLLGEDRFLSTLMLRTFPKRKQIFVPKAACKTIVPAEFKVLLSQRRRWINSTVHNLMELVLVRDLCGVFCISMQFVVFVDLVSTLVLPAAITFTLYVVIIAIVRKPTPTMSLILLALILGLPGVLIVITASRLSYVLWMIIYLFSLPIWNFVLPMNAYWKFDDFSWGDTRTIEGGDKGGHDETSGEFDSSQIIMKRWRDFQRERSRNIYPQSSGWGEGTVSMLSSSSLNAPMSLNSHTMDHASPTTSNLGSEFVQRPEDMTQF
SIO_010081: AWJ20_4861
subclass of: SO_0000673
so part of: AWJ20_4861
location: complement(757091..760846)
location: region:757091-760846:-1
so has part: feature:757091-760846:-1:exon

XP_018736387.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:757091-760846:-1:exon

AWJ20_4862
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4862
so part of: sequence
location: complement(<763153..>763563)
location: region:763153-763563:-1
so has part: feature:763153-763563:-1:exon
subclass of: SO_0000010

30037040
type: Gene
SIO_000068: ncbigene

position:763153:-1
position: 763153
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:763563:-1
position: 763563
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:763153-763563:-1:exon

AWJ20_4862
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4862
product: hypothetical protein
transcript id: XM_018881962.1
SIO_010081: AWJ20_4862
subclass of: SO_0000673
so part of: AWJ20_4862
location: complement(<763153..>763563)
location: region:763153-763563:-1
so has part: feature:763153-763563:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:763153-763563:-1:exon

AWJ20_4862
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4862
codon start: 1
product: hypothetical protein
translation: MATSTRYRRQAPTSSEIISSTTISNSEAEEVLTQYLDSITTKDSVSHQLTRLQRSLRGLPSLLQDPEEFVDGEDQADVNMDINMDADALPNGTVKPASDGKISKEQRKKLKKERRKQEKKERASKPKADENDDMSE
SIO_010081: AWJ20_4862
subclass of: SO_0000673
so part of: AWJ20_4862
location: complement(763153..763563)
location: region:763153-763563:-1
so has part: feature:763153-763563:-1:exon

XP_018736388.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:763153-763563:-1:exon

AWJ20_4863
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MSD1
locus tag: AWJ20_4863
so part of: sequence
location: complement(<764663..>766093)
location: region:764663-766093:-1
so has part: feature:764663-766093:-1:exon
subclass of: SO_0000010

30037041
type: Gene
SIO_000068: ncbigene

position:764663:-1
position: 764663
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:766093:-1
position: 766093
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:764663-766093:-1:exon

AWJ20_4863
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MSD1
locus tag: AWJ20_4863
product: aspartate--tRNA ligase MSD1
transcript id: XM_018881963.1
SIO_010081: AWJ20_4863
subclass of: SO_0000673
so part of: AWJ20_4863
location: complement(<764663..>766093)
location: region:764663-766093:-1
so has part: feature:764663-766093:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:764663-766093:-1:exon

AWJ20_4863
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MSD1
locus tag: AWJ20_4863
inference: similar to AA sequence:KEGG_Orthology:K01876
note: Mitochondrial aspartyl-tRNA synthetase; required for acylation of aspartyl-tRNA; yeast and bacterial aspartyl-, asparaginyl-, and lysyl-tRNA synthetases contain regions with high sequence similarity, suggesting a common ancestral gene; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP,ISS] [PMID 2668951]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004815 - aspartate-tRNA ligase activity [Evidence IEA]; GO_function: GO:0004815 - aspartate-tRNA ligase activity [Evidence IMP,ISA] [PMID 2668951]; GO_function: GO:0016874 - ligase activity [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0070146 - mitochondrial aspartyl-tRNA aminoacylation [Evidence IGI] [PMID 10710420]; GO_process: GO:0070146 - mitochondrial aspartyl-tRNA aminoacylation [Evidence IMP] [PMID 2668951]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]
codon start: 1
product: aspartate--tRNA ligase MSD1
translation: MEIETPLLFKSTPEGASEFLVPTRRKGLMYALPQSPQQYKQLLMASGVHGYYQIARCFRDEDLRADRQPEFTQLDLEMSFASGQDIRRVVETVVQNVWSGVLDIPMYTLTADGKYLEKVDSDSPNAFRSLSYNSAISRFGIDKPDLRSSLEIIDLSDSAKAIESPEYPIIEALVIRPEVNGSFTQEQIDFLSDEKSYKARIPKIALITESDLASIEQTVERILPPSVVNITDKTRFYRELSLQTGDIVAFSTRQQLSYENPTPLGRFRQLAIEQFPNQYLRTGADGQPLITPDDFVATWVDDFPLFNPVETTQPEVNTSNSTTSTRVDYPKFDLTSYVSTHHPFTMVHMDDYELLSTAPLQARGQHYDLVINGVEVGGGSTRIHDTKLQKYIFEEILNITNSKALFGHLLEAFDTGCPPHAGLAIGFDRMTAMLSRTSSIRDVIAFPKTITGADPLIGSPSKVKPSQLGPYHIRTM
SIO_010081: AWJ20_4863
subclass of: SO_0000673
so part of: AWJ20_4863
location: complement(764663..766093)
location: region:764663-766093:-1
so has part: feature:764663-766093:-1:exon

XP_018736389.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:764663-766093:-1:exon

AWJ20_4864
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RPN11
locus tag: AWJ20_4864
so part of: sequence
location: <767860..>768792
location: region:767860-768792:1
so has part: feature:767860-768792:1:exon
subclass of: SO_0000010

30037042
type: Gene
SIO_000068: ncbigene

position:767860:1
position: 767860
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:768792:1
position: 768792
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:767860-768792:1:exon

AWJ20_4864
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RPN11
locus tag: AWJ20_4864
product: proteasome regulatory particle lid subunit RPN11
transcript id: XM_018881964.1
SIO_010081: AWJ20_4864
subclass of: SO_0000673
so part of: AWJ20_4864
location: <767860..>768792
location: region:767860-768792:1
so has part: feature:767860-768792:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:767860-768792:1:exon

AWJ20_4864
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RPN11
locus tag: AWJ20_4864
inference: similar to AA sequence:KEGG_Orthology:K03030
note: Metalloprotease subunit of 19S regulatory particle; part of 26S proteasome lid; couples the deubiquitination and degradation of proteasome substrates; involved, independent of catalytic activity, in fission of mitochondria and peroxisomes; protein abundance increases in response to DNA replication stress; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 19773362]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19773362]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15210724]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0008541 - proteasome regulatory particle, lid subcomplex [Evidence IDA] [PMID 11742986]; GO_component: GO:0008541 - proteasome regulatory particle, lid subcomplex [Evidence IDA] [PMID 9741626]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence ISS] [PMID 12183636]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IMP] [PMID 12183636]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IMP] [PMID 12353037]; GO_process: GO:0000266 - mitochondrial fission [Evidence IMP] [PMID 19773362]; GO_process: GO:0016559 - peroxisome fission [Evidence IMP] [PMID 19773362]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12183636]; GO_process: GO:0016579 - protein deubiquitination [Evidence IMP] [PMID 12183636]; GO_process: GO:0016579 - protein deubiquitination [Evidence IGI] [PMID 14581483]; GO_process: GO:0006508 - proteolysis [Evidence IEA]
codon start: 1
product: proteasome regulatory particle lid subunit RPN11
translation: MDHIQRLLGQGGGMGAHPGVDSPVVDNSETVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDFTVHVIDVFAMPQSGTGVSVEAVDDVFQTRMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDINTQQSFEQLNPRAVAVVVDPIQSVKGKVVIDAFRLINPASLMMGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSININYKKTPLEETMLLNLHKSDWSSGLALKDYTVHDHDNHDAVKQMVKLADQYTARVKEEKELTEDQLKTRYVGKQDPKKHLEDTVNQRLEENIVSILAGNVDTASFH
SIO_010081: AWJ20_4864
subclass of: SO_0000673
so part of: AWJ20_4864
location: 767860..768792
location: region:767860-768792:1
so has part: feature:767860-768792:1:exon

XP_018736390.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:767860-768792:1:exon

AWJ20_4865
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SSE2
locus tag: AWJ20_4865
so part of: sequence
location: complement(<769241..>771364)
location: region:769241-771364:-1
so has part: feature:769241-771364:-1:exon
subclass of: SO_0000010

30037043
type: Gene
SIO_000068: ncbigene

position:769241:-1
position: 769241
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:771364:-1
position: 771364
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:769241-771364:-1:exon

AWJ20_4865
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SSE2
locus tag: AWJ20_4865
product: adenyl-nucleotide exchange factor SSE2
transcript id: XM_018881965.1
SIO_010081: AWJ20_4865
subclass of: SO_0000673
so part of: AWJ20_4865
location: complement(<769241..>771364)
location: region:769241-771364:-1
so has part: feature:769241-771364:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:769241-771364:-1:exon

AWJ20_4865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SSE2
locus tag: AWJ20_4865
inference: similar to AA sequence:KEGG_Orthology:K09485
note: Member of the heat shock protein 70 (HSP70) family; may be involved in protein folding; localized to the cytoplasm; SSE2 has a paralog, SSE1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0000774 - adenyl-nucleotide exchange factor activity [Evidence IDA] [PMID 16688212]; GO_function: GO:0005516 - calmodulin binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence ISS] [PMID 8406043]; GO_process: GO:0042026 - protein refolding [Evidence IGI] [PMID 16688211]; GO_process: GO:0006950 - response to stress [Evidence IEA]
codon start: 1
product: adenyl-nucleotide exchange factor SSE2
translation: MSTPFGIDFGNYSSVIGVARNRGIDVVVNEVSNRATPSLVGFGVKNRYLGEAARSNEISNLKNTVGSLKRILGRKSDDPALEIEKKFITSELVDVEGLAGVKVRFQGEQKTFNSIQLAAMYLNKLKHITTTEIKGNVSDVVIAVPVWYSEVQRRAAADAAIIAGLNPVRIVNDLTAAAVGYGVFKNSELPEDKPRNVAIVDFGHASYSVSIAAFKKGELKILATAYNRDFGGRDVDLAIANHFGKIFQEKYKIDIHSNPKAFSRVLTQAERLKKILSANTSAPFNIESLMNDIDVSASMTREELEEYIQPFLAQIPEPIERALKDAKLTPADLDSIEVIGGSSRIPSVKEKLVEVFGGKSLSFTLNQDEAVARGAAFICAIHSPTVRVRPFKFEDLNIYSVTYSWEKVEGEDVNELEVFPAGGWFPNSKVITLFRTADFDLEARYTHPETLEKGINAWIGKWAVKGVKPSENGEAVAVKVKLRQDPSGFYTVESAYTAEERTVEEEIPFEGELKEGEEAPEPQYKTVKKWFKKDDLTIVHTHTGLDDAAQAKLLEIESQLTSEDKLVADTEDRKNALEEYIYDIRGKIDDLYKDFASDDEKARLREKADAAEEWLYGDGDDATKAQYIAKYEELASIGNVIRGRYLSKIEEERQAKQAAQEAEKQRIMAEKLQAQKAAQAAAQAEAAAKAAEEAGSQDADGDVSIEN
SIO_010081: AWJ20_4865
subclass of: SO_0000673
so part of: AWJ20_4865
location: complement(769241..771364)
location: region:769241-771364:-1
so has part: feature:769241-771364:-1:exon

XP_018736391.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:769241-771364:-1:exon

AWJ20_4866
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: NPL4
locus tag: AWJ20_4866
so part of: sequence
location: complement(<771842..>773323)
location: region:771842-773323:-1
so has part: feature:771842-773323:-1:exon
subclass of: SO_0000010

30037044
type: Gene
SIO_000068: ncbigene

position:771842:-1
position: 771842
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:773323:-1
position: 773323
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:771842-773323:-1:exon

AWJ20_4866
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: NPL4
locus tag: AWJ20_4866
product: Npl4p
transcript id: XM_018881966.1
SIO_010081: AWJ20_4866
subclass of: SO_0000673
so part of: AWJ20_4866
location: complement(<771842..>773323)
location: region:771842-773323:-1
so has part: feature:771842-773323:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:771842-773323:-1:exon

AWJ20_4866
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: NPL4
locus tag: AWJ20_4866
inference: similar to AA sequence:KEGG_Orthology:K14015
note: Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase; assists Cdc48p in the dislocation of misfolded, polyubiquitinated ERAD substrates that are subsequently delivered to the proteasome for degradation; also involved in the regulated destruction of resident ER membrane proteins, such as HMG-CoA reductase (Hmg1/2p) and cytoplasmic proteins (Fbp1p); role in mobilizing membrane bound transcription factors by regulated ubiquitin/proteasome-dependent processing (RUP); GO_component: GO:0034098 - Cdc48p-Npl4p-Ufd1p AAA ATPase complex [Evidence IDA] [PMID 11598205]; GO_component: GO:0034098 - Cdc48p-Npl4p-Ufd1p AAA ATPase complex [Evidence IDA] [PMID 11733065]; GO_component: GO:0036266 - Cdc48p-Npl4p-Vms1p AAA ATPase complex [Evidence IDA] [PMID 21070972]; GO_component: GO:0000837 - Doa10p ubiquitin ligase complex [Evidence IDA] [PMID 16873066]; GO_component: GO:0000839 - Hrd1p ubiquitin ligase ERAD-L complex [Evidence IDA] [PMID 16873065]; GO_component: GO:0000839 - Hrd1p ubiquitin ligase ERAD-L complex [Evidence IDA] [PMID 16873066]; GO_component: GO:1990112 - RQC complex [Evidence IDA] [PMID 23178123]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0042175 - nuclear outer membrane-endoplasmic reticulum membrane network [Evidence IDA] [PMID 11598205]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0071712 - ER-associa…
codon start: 1
product: Npl4p
translation: MCRHGDKGMCDYCMPLEPFDSGYQQEKNIKHLSYHAYLRKLNADSNKSSIANGHGGTKGTRSGVAGSSSSYMSPLSEPFFGVAKNCPSGHPPWPQGICSKCQPSAITLQQQQFRMVDHVEFADSSIVNSFIESWRLTGAQRIGYLYGRYVPYEVVPLGIKAVVEAIYEPPQSDEIDGVSLTLPWNEESLVDRVAAGLSADNSTSASGSTTGSTTGSASGSQSGSGQHTLGLQKIGVIYTDLLDAGKGDGSVVCKRHVDSYFLSSLEIAFAADLQNQHPNPSRWSDTGNFSSKFVTCVITGNSKGEIDISSYQVSTNAEAMRKADLIEPSANPSVMRIKEPTKTRYVPEIFYKRVNEYKLTVSENAKPAFPVEYLLVTLTHGFPDSPKPLLTSPTPFPIENRQHVGVLQDFRAIANHLNLKTGTSINNQTELSSDMSRISDFHLLVYLVGLGILSSDEEKLLLRAAASHSPDDGYLLTQTPGWQTLLTITRESV
SIO_010081: AWJ20_4866
subclass of: SO_0000673
so part of: AWJ20_4866
location: complement(771842..773323)
location: region:771842-773323:-1
so has part: feature:771842-773323:-1:exon

XP_018736392.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:771842-773323:-1:exon

AWJ20_4867
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: bdc1
locus tag: AWJ20_4867
so part of: sequence
location: complement(<774150..>776045)
location: region:774150-776045:-1
so has part: feature:774150-776045:-1:exon
subclass of: SO_0000010

30037045
type: Gene
SIO_000068: ncbigene

position:774150:-1
position: 774150
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:776045:-1
position: 776045
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:774150-776045:-1:exon

AWJ20_4867
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: bdc1
locus tag: AWJ20_4867
product: bromodomain containing protein 1, Bdc1
transcript id: XM_018881967.1
SIO_010081: AWJ20_4867
subclass of: SO_0000673
so part of: AWJ20_4867
location: complement(<774150..>776045)
location: region:774150-776045:-1
so has part: feature:774150-776045:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:774150-776045:-1:exon

AWJ20_4867
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: bdc1
locus tag: AWJ20_4867
codon start: 1
product: bromodomain containing protein 1, Bdc1
translation: MSTSLLNLLFAQTIYGQILRDREEERLAQANGDAKSRSSSSSPAPQSGTATGKPNQFVKLSQDLRSHPLNTNFNLTPQACQALYNALLPSNPPRPTVEMLQPLLAKLYESYKRDMTLSIQKSEQDYQTKLKEMELIASGKWDNELLKEAERDKSQQQQQQQQQQQQQQLRLQKQLEIQQKQEQERKAQLQAQAQAAKPLASTDNKHDSVAESDAESESGSEEESDQEPEASTPKPSNSVSDGKSVATSTAVDNKSKHPDEDEEAGEDEEEEEEEEEEGEEENEKEGADVEEGEEEELEEEDTTLKSSLKGPSDEVDEGTVKQETQEKADKPDASVKTETGDNNEGEEKEDEDEDVEMADLEADADADAEESEVPAKDNVKKEHATDKEDTQEVEDEEEEVEEGDEEEEPETVEQEAKSAPPQKPVEDDEEAEEEAEEAEDADEEEAEEAEDETEVPDETRRTTRQSRRNKQEPATTTTSSSKRKRTPSPSPARPSRRFQTLVNPLISDIMSNKSASFFSHPVNPNDAPAYYDLIYSPTDLRTIKSMVKEGKIRDTAELERELEKMFANAVMYNGWDSDISMWAREMQHDTETMLALFRSAERRGRARSNSATPSGADDEPSNTNSAKRRKK
SIO_010081: AWJ20_4867
subclass of: SO_0000673
so part of: AWJ20_4867
location: complement(774150..776045)
location: region:774150-776045:-1
so has part: feature:774150-776045:-1:exon

XP_018736393.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:774150-776045:-1:exon

AWJ20_4868
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SEC66
locus tag: AWJ20_4868
so part of: sequence
location: <777130..>777489
location: region:777130-777489:1
so has part: feature:777130-777489:1:exon
subclass of: SO_0000010

30037046
type: Gene
SIO_000068: ncbigene

position:777130:1
position: 777130
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:777489:1
position: 777489
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:777130-777489:1:exon

AWJ20_4868
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SEC66
locus tag: AWJ20_4868
product: Sec63 complex subunit SEC66
transcript id: XM_018881968.1
SIO_010081: AWJ20_4868
subclass of: SO_0000673
so part of: AWJ20_4868
location: <777130..>777489
location: region:777130-777489:1
so has part: feature:777130-777489:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:777130-777489:1:exon

AWJ20_4868
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SEC66
locus tag: AWJ20_4868
inference: similar to AA sequence:KEGG_Orthology:K12273
codon start: 1
product: Sec63 complex subunit SEC66
translation: MKAAILKWAAEDIRQMIRMNDSKQYLTVLHQRGSVGDDIWKRFTMSEKFLQLELEDIRREAEAIHPNWTQQLFQTASEIAQNEGLRKRINEFPAQQQEYRQAFEALRENSIKELTSEKN
SIO_010081: AWJ20_4868
subclass of: SO_0000673
so part of: AWJ20_4868
location: 777130..777489
location: region:777130-777489:1
so has part: feature:777130-777489:1:exon

XP_018736394.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:777130-777489:1:exon

AWJ20_4869
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SMY2
locus tag: AWJ20_4869
so part of: sequence
location: complement(<780196..>784647)
location: region:780196-784647:-1
so has part: feature:780196-784647:-1:exon
subclass of: SO_0000010

30037047
type: Gene
SIO_000068: ncbigene

position:780196:-1
position: 780196
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:784647:-1
position: 784647
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:780196-784647:-1:exon

AWJ20_4869
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SMY2
locus tag: AWJ20_4869
product: Smy2p
transcript id: XM_018881969.1
SIO_010081: AWJ20_4869
subclass of: SO_0000673
so part of: AWJ20_4869
location: complement(<780196..>784647)
location: region:780196-784647:-1
so has part: feature:780196-784647:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:780196-784647:-1:exon

AWJ20_4869
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SMY2
locus tag: AWJ20_4869
note: GYF domain protein; involved in COPII vesicle formation; interacts with the Sec23p/Sec24p subcomplex; overexpression suppresses the temperature sensitivity of a myo2 mutant; similar to S. pombe Mpd2; SMY2 has a paralog, SYH1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 17804396]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 17973654]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 17973654]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI,IPI] [PMID 17973654]
codon start: 1
product: Smy2p
translation: MSKSSALSLGPEWYVSSQCCLAPLVARSSSGGGLPPAAGAPPQTLVAPASQELVGFVDGIDSSEARGAGGSGAQPQPPEARLFVELTGIRTRLKSGSSKVLKDDKTANGNNNSPNGPEKVKLPWSGIAAGAASSANSIASGSSNSSNGGGVAAAGPGLAGASSASGPSFAAAASALKRKTSGTNVSPSVTSSAGSATASGSAGAASGAGAGRNSGASGISDINNSAAGGGVFAISAAAGGSGLFGMRKSSSGDDSDATSQSSLSGKRVGSTSTTTATTTNTHANSGLSTGNISSPVTGLGAITGSGLAGSVPYKVGGTRVAVSLEDSVQGVTAGASDSAAGAAGASGSGSSSNGPKSEPVVLRANAGAKKYSSKEMLAIWDRIKNSKEFRESKRIAVTELTENSDPASAPASGSGSANTITTNTSFNTNIGNNGQQRGYHNRYHHGNNNTNNNNNNGGGVGGGSKLFTPFGRYKNPNDLYYSNMTNMPVNYDTPPKQRPYRDGDDRNAHVHGSSHGTGHGSSQGSGTGTGTGTTVDDIGRKSGGVSLTSVTGAGGAATTETGLRSGGTGNGSRLMDTINSASSKVADDAFFSSLVSSGARSDSGGQVAQNQPQAPAPTTSIASNILPASIASDSWSPFGNFSITPSSARNDLSSHPSDTALSRIGSGTNLLGISKPGSTPTASAVAGGSTASDFFSSPIKRVGTPLSNAAMAATPPPGIPSPQPNPPLILPENVQWVYKDPSGVEQGPFSGKLMHDWYTGNWLKEDLLIKRIGETDYITLHDFKLKIGNFTEPFRVPLPPVLPPSLPPPFGQQQQQPSPFGHGIPYFDDLQRDVFRQHHHQAQQPLQLPNQHQQFGGAAPVIPSAWGASGSPVVSPGPMSPISPWGQPIQPVHQPATHSQSNFFQDQPLHSQLAPVLSHSSQDTSAAAATAASVANSAVGSPVQEPSSGPLGQSLWKGLDSVQRDLSSSGSVADIINNAENLSLNDDIKAQTQAEPVSEETSTGASSTKSEDNSESKRELTKAEIKKAKKKAKAELQSAAAAAVAAAAAERAEKANNKQEHSEPTASTDDDSADQTTKTATSSVESTPVTSGSNSTHAATSTVASTGSTGHGHTLTLSTTTSPTATAAPALAPWAKKDTKPKALSLKEIQELEASERAKQTAKQQELVQQQLLAARLAGGVSSSSTSGPILPSGAKWASSMNSAASPKKTLAEIQREEELAAAAAAKKKAQALAQAQAQTISSPIAGTTASTGVPTGASGATPTISPIAASLPFGKKYAEIVTPGAPSSVRPGVSSATSSSLATGLSSTGAPAWTTVGPGGRKVSSPATTGVAASIAAGGSSPLKRAISSTTLRPAAAPVPTAPRVLTASDEFLQWCKGALQDLNAGINQTELLSILLSLPATPDSKEIIAETIYSNSSTMDGRRFADEFLKKRNVADKEKSGETWSDVLQRNATAPPKPVENDGWNPAFKVVKKKNKRADQF
SIO_010081: AWJ20_4869
subclass of: SO_0000673
so part of: AWJ20_4869
location: complement(780196..784647)
location: region:780196-784647:-1
so has part: feature:780196-784647:-1:exon

XP_018736395.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:780196-784647:-1:exon

AWJ20_4870
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SAD1
locus tag: AWJ20_4870
so part of: sequence
location: <785371..>787437
location: region:785371-787437:1
so has part: feature:785371-787437:1:exon
subclass of: SO_0000010

30037049
type: Gene
SIO_000068: ncbigene

position:785371:1
position: 785371
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:787437:1
position: 787437
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:785371-787437:1:exon

AWJ20_4870
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SAD1
locus tag: AWJ20_4870
product: Sad1p
transcript id: XM_018881971.1
SIO_010081: AWJ20_4870
subclass of: SO_0000673
so part of: AWJ20_4870
location: <785371..>787437
location: region:785371-787437:1
so has part: feature:785371-787437:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:785371-787437:1:exon

AWJ20_4870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SAD1
locus tag: AWJ20_4870
inference: similar to AA sequence:KEGG_Orthology:K12847
note: Conserved zinc-finger domain protein involved in pre-mRNA splicing; critical for splicing of nearly all intron-containing genes; required for assembly of U4 snRNA into the U4/U6 particle; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10022888]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IDA] [PMID 10022888]; GO_process: GO:0000245 - spliceosomal complex assembly [Evidence IDA] [PMID 24681967]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]
codon start: 1
product: Sad1p
translation: MGNGDETRAADEAALVDTEISAVESVEQNGSEIQLEHEHEHQHEHEHEHEINNSFEKAGSVKEIENGDTTEMRTRKRRLNEEKNDDDENETIHTNGSVPGTSTPDSSEARGAVGSGAKPQPPEVRRHPSNSQSKIEEEQKEEEEEEEGVWPVRPVRQVQEPSSSMLYLDTVDRSRLDFDFEKICSVSLSVVNVYACLCCGKYFQGRGKSSYAFVHSVDVDHHVFINLQTLKIYVLPEGYEVKTTALDDIKYVIDPWYTADEIKSLDTVALNSSFDLTHKQYYPGYIGINNIKANDYANVVIQILSHVSPVRDFFLTLGQGRATGSSQSNGSSASISMANSMANSTNGTSQAGSSELASRLSTLIRKIWNPRAFRAHVSPHELLQSVSSASKKQFTSTQQSDPFLFFTWLLNRLTAELTVGPTNTRFSRDSSPGTPTAAITTAVSTTTTKDQQPVKKKLKPTSTRSSKPIKPRGIIQKTFQGTLLVEQQQLPRTLPSGASADTFLPNEPIKTTETPFLCLTLDLPPIPLFKESTQDGAPVIPQVTLKSLLNKYNGTTVTTDEITKTMKKYKLTRVPEFLVLRIKRITRNLLGDADERNPTVVSFSPTNLDMAPYLTSSSTTSPSSTRYNLIANVVCEWDGNTPRWKIQLLDKSRDRWLQIENLLVEPIQRELLFLSESHLQIWQRQSPL
SIO_010081: AWJ20_4870
subclass of: SO_0000673
so part of: AWJ20_4870
location: 785371..787437
location: region:785371-787437:1
so has part: feature:785371-787437:1:exon

XP_018736396.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:785371-787437:1:exon

AWJ20_4871
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: UMP1
locus tag: AWJ20_4871
so part of: sequence
location: complement(<788160..>788480)
location: region:788160-788480:-1
so has part: feature:788160-788480:-1:exon
subclass of: SO_0000010

30037050
type: Gene
SIO_000068: ncbigene

position:788160:-1
position: 788160
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:788480:-1
position: 788480
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:788160-788480:-1:exon

AWJ20_4871
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: UMP1
locus tag: AWJ20_4871
product: Ump1p
transcript id: XM_018881972.1
SIO_010081: AWJ20_4871
subclass of: SO_0000673
so part of: AWJ20_4871
location: complement(<788160..>788480)
location: region:788160-788480:-1
so has part: feature:788160-788480:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:788160-788480:-1:exon

AWJ20_4871
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: UMP1
locus tag: AWJ20_4871
inference: similar to AA sequence:KEGG_Orthology:K11599
note: Chaperone required for correct maturation of the 20S proteasome; short-lived chaperone; may inhibit premature dimerization of proteasome half-mers; degraded by proteasome upon completion of its assembly; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11922673]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11922673]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IDA] [PMID 10975253]; GO_process: GO:0043248 - proteasome assembly [Evidence IGI] [PMID 17431397]; GO_process: GO:0043248 - proteasome assembly [Evidence IMP] [PMID 9491890]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 9491890]
codon start: 1
product: Ump1p
translation: MRSIAAEMNGNHPLQSRLEKWNETQLEFKLDGYRRTYGAGEPIRRAMELQIVKDTSVLPKIVTGPSRPLHLDILEGRDDAVDWDEVYTGPESTLDFHSELEKRMNV
SIO_010081: AWJ20_4871
subclass of: SO_0000673
so part of: AWJ20_4871
location: complement(788160..788480)
location: region:788160-788480:-1
so has part: feature:788160-788480:-1:exon

XP_018736397.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:788160-788480:-1:exon

AWJ20_4872
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PTC5
locus tag: AWJ20_4872
so part of: sequence
location: <789365..>790984
location: region:789365-790984:1
so has part: feature:789365-790984:1:exon
subclass of: SO_0000010

30037051
type: Gene
SIO_000068: ncbigene

position:789365:1
position: 789365
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:790984:1
position: 790984
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:789365-790984:1:exon

AWJ20_4872
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PTC5
locus tag: AWJ20_4872
product: type 2C protein phosphatase PTC5
transcript id: XM_018881973.1
SIO_010081: AWJ20_4872
subclass of: SO_0000673
so part of: AWJ20_4872
location: <789365..>790984
location: region:789365-790984:1
so has part: feature:789365-790984:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:789365-790984:1:exon

AWJ20_4872
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PTC5
locus tag: AWJ20_4872
inference: similar to AA sequence:KEGG_Orthology:K01102
note: Mitochondrial type 2C protein phosphatase (PP2C); involved in regulation of pyruvate dehydrogenase activity by dephosphorylating the serine 133 of the Pda1p subunit; localizes to the intermembrane space and is imported via the presequence pathway and processed by the inner membrane protease (Imp1p-Imp2p); acts in concert with kinases Pkp1p and Pkp2p and phosphatase Ptc6p; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16643908]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004741 - [pyruvate dehydrogenase (lipoamide)] phosphatase activity [Evidence IEA]; GO_function: GO:0004741 - [pyruvate dehydrogenase (lipoamide)] phosphatase activity [Evidence ISS] [PMID 16643908]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA,ISS] [PMID 10580002]; GO_process: GO:0043085 - positive regulation of catalytic activity [Evidence IMP] [PMID 18180296]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IEA]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA] [PMID 10580002]; GO_process: GO:0050790 - regulation of catalytic activity [Evidence IMP] [PMID 16643908]
codon start: 1
product: type 2C protein phosphatase PTC5
translation: MSNPRVANDSPGPGGPGITGPSQAAGPVRLASNSAKQSISMLTPAQVSSRLRENEESYLVDRGKGVLRYDVAQLPSNNPIEDDRSERVVQVPLIVEPSGSTSSGSNSNSGSGNGVSEKSEVASGGETGENGETMVSSDWMFWGVYDGHSGWTTSAFLRDHLVAYVLNELDKVYEKSSPNSMYRLVPSPEVIDEAIQQGFLALDDEIVNKRVARLLESSGSSKASATELIAPALSGSCGLLAFYDTFSKNLRVAVTGDSRAVLGSRDSYGNWTATALSTDQTGSNIDEANRVRSEHPGEENTAIRNGRVLGSLEPTRAFGDARYKWARDIQHKIAQRFFGRRIPSELKTPPYVTAKPVVTTTKVNPENGDFLVMGSDGVFEMLSNEEVVSLVVQWLKAKRPEYLETTLKSSQSDGSGLFSKLFGSGKRSDRDDGALVEDISSNKEAQKQPIRRRNGVPVRFTVQDDNAATHIIRNALGGADQDQVSMLVSIPSPLARNYRDDLTVTVVFFGHDSTPSNDAGSIKVNQAGTRNGIRARSRL
SIO_010081: AWJ20_4872
subclass of: SO_0000673
so part of: AWJ20_4872
location: 789365..790984
location: region:789365-790984:1
so has part: feature:789365-790984:1:exon

XP_018736398.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:789365-790984:1:exon

AWJ20_4873
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4873
so part of: sequence
location: complement(<791263..>792141)
location: region:791263-792141:-1
so has part: feature:791263-792141:-1:exon
subclass of: SO_0000010

30037052
type: Gene
SIO_000068: ncbigene

position:791263:-1
position: 791263
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:792141:-1
position: 792141
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:791263-792141:-1:exon

AWJ20_4873
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4873
product: glucose-6-phosphate 1-epimerase
transcript id: XM_018881974.1
SIO_010081: AWJ20_4873
subclass of: SO_0000673
so part of: AWJ20_4873
location: complement(<791263..>792141)
location: region:791263-792141:-1
so has part: feature:791263-792141:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:791263-792141:-1:exon

AWJ20_4873
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4873
inference: similar to AA sequence:KEGG_Orthology:K01792
note: Glucose-6-phosphate 1-epimerase (hexose-6-phosphate mutarotase); likely involved in carbohydrate metabolism; GFP-fusion protein localizes to both the nucleus and cytoplasm and is induced in response to the DNA-damaging agent MMS; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0030246 - carbohydrate binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0047938 - glucose-6-phosphate 1-epimerase activity [Evidence IEA]; GO_function: GO:0047938 - glucose-6-phosphate 1-epimerase activity [Evidence IDA] [PMID 16857670]; GO_function: GO:0016853 - isomerase activity [Evidence IEA,IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0044262 - cellular carbohydrate metabolic process [Evidence IC] [PMID 16857670]
codon start: 1
product: glucose-6-phosphate 1-epimerase
translation: MASYIKETETEIVLTHPRDSSTSVRILKYGATILSWKVKGQEQLWLSEKAILDGSKAVRGGIPLVFPVFGKSEGHETSQLPQHGFARNSVWEFLGQVESDPLTVQFGLGPENISETARCQWPHDFTLIFTVSLPSEDSLSTSLEVENTDKQPWEFNVLFHTYFRIPDITQTHVEGLTGTQVTDKVSKTNYAGNEAKITIAGEVDRVYSSPSTPDSVAIVSGSKTLFNVQNLQNLKDVVVWNPWTEKANGLADFSPKDGFKNMICVETGSVSKYQTVAPGAKWSASQTLKSHL
SIO_010081: AWJ20_4873
subclass of: SO_0000673
so part of: AWJ20_4873
location: complement(791263..792141)
location: region:791263-792141:-1
so has part: feature:791263-792141:-1:exon

XP_018736399.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:791263-792141:-1:exon

AWJ20_4874
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SIT1
locus tag: AWJ20_4874
so part of: sequence
location: <793841..>795592
location: region:793841-795592:1
so has part: feature:793841-795592:1:exon
subclass of: SO_0000010

30037053
type: Gene
SIO_000068: ncbigene

position:793841:1
position: 793841
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:795592:1
position: 795592
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:793841-795592:1:exon

AWJ20_4874
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SIT1
locus tag: AWJ20_4874
product: Sit1p
transcript id: XM_018881975.1
SIO_010081: AWJ20_4874
subclass of: SO_0000673
so part of: AWJ20_4874
location: <793841..>795592
location: region:793841-795592:1
so has part: feature:793841-795592:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:793841-795592:1:exon

AWJ20_4874
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SIT1
locus tag: AWJ20_4874
inference: similar to AA sequence:KEGG_Orthology:K08197
note: Ferrioxamine B transporter; member of the ARN family of transporters that specifically recognize siderophore-iron chelates; transcription is induced during iron deprivation and diauxic shift; potentially phosphorylated by Cdc28p; GO_component: GO:0016023 - cytoplasmic membrane-bounded vesicle [Evidence IDA] [PMID 10748025]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 19469713]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0015344 - siderophore uptake transmembrane transporter activity [Evidence IMP,ISS] [PMID 9884238]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IDA,IMP] [PMID 9884238]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0015891 - siderophore transport [Evidence IMP] [PMID 9884238]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 9884238]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Sit1p
translation: MVSDSVEEKSRDGPEGYQPSYEGFDQQAEKEKSIGVRKVEIYSSQYKLVGKIFVFFSVFLVSYAYGLDSNIRYVYQATATSSYAEHSLLSTVNVIKAVIGAAGQPVYARLSDVFGRLELFIAAILFYVVGTIIESQAYDVQRFAGGAILFQVGYTGIVLLMELIVADFSFLNWRLVASFVPALPFIINTWISGNITGDMGLRWSWGIGMWAIIFPVASIPLLICLIHMRYRAHKSGQMDAIKAEETDFQRLGFWGFMKHLFWQLDVVGIILLIAVFALILVPFTIAGGVEEEWKKAKIIAPLVIGFCCIPVFAVWEFKYAPIPLVPMKHLRNRTVYSAVCIAVLINFIWYMQGDYMYTVLVVAVNQSTTSANRITSLYSFVSVITGTILGLIVARLRYLKGFIVFGTCMWLLSMGLLIHYRGGTDSKSGIIGSMCVLGFGAGLFTYPVQVMIQASVKHEHMAIITSLYLASYNIGSALGGSVSGAIWTQILPKELSKRLSDPALVTAAYGSPFTFIISYPWGTPERMAVVEAYKHVQKILLIVGTCLCVPLIFFALIIDNYKLESVQSLPGAEKDGESESLSS
SIO_010081: AWJ20_4874
subclass of: SO_0000673
so part of: AWJ20_4874
location: 793841..795592
location: region:793841-795592:1
so has part: feature:793841-795592:1:exon

XP_018736400.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:793841-795592:1:exon

AWJ20_4875
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4875
so part of: sequence
location: <799253..>800890
location: region:799253-800890:1
so has part: feature:799253-800890:1:exon
subclass of: SO_0000010

30037054
type: Gene
SIO_000068: ncbigene

position:799253:1
position: 799253
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:800890:1
position: 800890
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:799253-800890:1:exon

AWJ20_4875
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4875
product: hypothetical protein
transcript id: XM_018881976.1
SIO_010081: AWJ20_4875
subclass of: SO_0000673
so part of: AWJ20_4875
location: <799253..>800890
location: region:799253-800890:1
so has part: feature:799253-800890:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:799253-800890:1:exon

AWJ20_4875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4875
codon start: 1
product: hypothetical protein
translation: MIVIGEENAVGWSTKVAIVGSGPSALSLSFILNGNIPYYDPVPYGPHPDESLHYCLLNYTAGNDLGKSLLDAVADEHIISYMESSYESFFSDQTLPVNLLIDALSASDESSFMNCHSKECRIKWVHESAKYVPHIVIGSSPRPGGQWGSYEFDSKDQLSLSYAEMLSLPGYSFSQYYMDTYGTTPADFYRPPRHQVADYYAMYPGKVGISENIVSNTLVTCVDRASHTGSFVISMRQCEGAVHKQCLLAADKVVLATGVYESPLESLKSASPKGINENNGTNTTDLTDVNSNGEYGRHDKTFYNLTNALVHNNSTSNSNSNSNSFDKHHFSFTIVPPLSTPPSEGARASQNKTCLIIGTGVSAAEAVNNSIALGYSVIHIYKWYDEKGSPCVFRRYPKELYPDYCKVFRMMKQRKVAGLYEGLPNAQILDISPDGMVEIKLEDGSTVCRTVSSVRACTGRTGSLSYLCNPVLDRSIESTIRTMPITKKTLRDKYIDKNDQSLCVGENVYAIGSLCGDTVVRFMLGASFSVAGELVDSSSAKSVGS
SIO_010081: AWJ20_4875
subclass of: SO_0000673
so part of: AWJ20_4875
location: 799253..800890
location: region:799253-800890:1
so has part: feature:799253-800890:1:exon

XP_018736401.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:799253-800890:1:exon

AWJ20_4876
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4876
so part of: sequence
location: complement(<800776..>801924)
location: region:800776-801924:-1
so has part: feature:800776-801924:-1:exon
subclass of: SO_0000010

30037055
type: Gene
SIO_000068: ncbigene

position:800776:-1
position: 800776
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:801924:-1
position: 801924
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:800776-801924:-1:exon

AWJ20_4876
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4876
product: hypothetical protein
transcript id: XM_018881977.1
SIO_010081: AWJ20_4876
subclass of: SO_0000673
so part of: AWJ20_4876
location: complement(<800776..>801924)
location: region:800776-801924:-1
so has part: feature:800776-801924:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:800776-801924:-1:exon

AWJ20_4876
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4876
codon start: 1
product: hypothetical protein
translation: MASAKGKGVPSQFKDLRNQLKKDENSAESLMELVLRHGPVKMLVNQDPGILHVLCTERPVLSVDRALEILSDLVSVRGDSEFEEVSLERIGSAGSDSEKLVGVSWVILRNAVSDKRFTEAFKVVDLVKRYEQQQRQRRRGIVGSSKVIINYISTVLGGKRSGASASASASASASSESAKASKSKSISASASAVVAAATLVPSLALYILSGPAALLVPIVYSSIALSYFVRWHLLPYPFYLPNLFGSISGSLLTWAPSVGPIYRAQRQLELDMVNRIVVGYSELVDINTSNYHVHHSREMPPVELENLINSQLLSRSMRLKPTHDEAMYQEYWQSAGQNLEWVEPDQDPTDLALDESTSSPATEKLAPSINRTTVSPHKLPIA
SIO_010081: AWJ20_4876
subclass of: SO_0000673
so part of: AWJ20_4876
location: complement(800776..801924)
location: region:800776-801924:-1
so has part: feature:800776-801924:-1:exon

XP_018736402.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:800776-801924:-1:exon

AWJ20_4877
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: VPS21
locus tag: AWJ20_4877
so part of: sequence
location: complement(<802480..>802965)
location: region:802480-802965:-1
so has part: feature:802480-802965:-1:exon
subclass of: SO_0000010

30037056
type: Gene
SIO_000068: ncbigene

position:802480:-1
position: 802480
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:802965:-1
position: 802965
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:802480-802965:-1:exon

AWJ20_4877
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: VPS21
locus tag: AWJ20_4877
product: Rab family GTPase VPS21
transcript id: XM_018881978.1
SIO_010081: AWJ20_4877
subclass of: SO_0000673
so part of: AWJ20_4877
location: complement(<802480..>802965)
location: region:802480-802965:-1
so has part: feature:802480-802965:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:802480-802965:-1:exon

AWJ20_4877
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: VPS21
locus tag: AWJ20_4877
inference: similar to AA sequence:KEGG_Orthology:K07889
note: Endosomal Rab family GTPase; required for endocytic transport and sorting of vacuolar hydrolases; required for endosomal localization of the CORVET complex; required with YPT52 for MVB biogenesis and sorting; involved in autophagy and ionic stress tolerance; geranylgeranylation required for membrane association; protein abundance increases in response to DNA replication stress; mammalian Rab5 homolog; VPS21 has a paralog, YPT53, that arose from the whole genome duplication; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0005770 - late endosome [Evidence IMP] [PMID 11872141]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 11210571]; GO_function: GO:0003924 - GTPase activity [Evidence IMP] [PMID 8163546]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006895 - Golgi to endosome transport [Evidence IGI,IMP] [PMID 22748138]; GO_process: GO:0006895 - Golgi to endosome transport [Evidence IGI,IMP] [PMID 23612966]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 8163546]; GO_process: GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway [Evidence IGI] [PMID 22748138]; GO_process: GO:0036258 - multivesicular body assembly [Evidence IGI] [PMID 22748138]; GO_process: GO:0036010 - protein localization to endosome [Evidence IGI] [PMID 23264632]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 8163546]; GO_process: GO:001503…
codon start: 1
product: Rab family GTPase VPS21
translation: MYYRNAQSALVVYDVTKPASFVKARHWVNELKAQASPGIVIALVGNKVDLVESDEDGSSGDAANGDGSAGSEGGSESARKVAIEEGKALAENEDLLFFETSAKSGLNVRQVFLAIANKIPQESGRRVATAVNGARTGADAGGRVDLNTPATASSSPSACNC
SIO_010081: AWJ20_4877
subclass of: SO_0000673
so part of: AWJ20_4877
location: complement(802480..802965)
location: region:802480-802965:-1
so has part: feature:802480-802965:-1:exon

XP_018736403.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:802480-802965:-1:exon

AWJ20_4878
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4878
so part of: sequence
location: complement(<806682..>808730)
location: region:806682-808730:-1
so has part: feature:806682-808730:-1:exon
subclass of: SO_0000010

30037057
type: Gene
SIO_000068: ncbigene

position:806682:-1
position: 806682
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:808730:-1
position: 808730
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:806682-808730:-1:exon

AWJ20_4878
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4878
product: hypothetical protein
transcript id: XM_018881979.1
SIO_010081: AWJ20_4878
subclass of: SO_0000673
so part of: AWJ20_4878
location: complement(<806682..>808730)
location: region:806682-808730:-1
so has part: feature:806682-808730:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:806682-808730:-1:exon

AWJ20_4878
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4878
codon start: 1
product: hypothetical protein
translation: MSTAVDNGAQGSAAQNEIQSGSGVSVGAGGAGGADGTGGTGGKGSIGETKGGGVQNEQIGLANGSGAGAGIIKSTSGSPALSGPLAPRTTFDLEPNPFEQSFASNATSTGSKSVSPANISGTAGVVVGAGGAGGAGIGIGAGIGGISGISGAAGGANGGANGGLGPLAPSIIGTTGTGQQIVATPGGRRHILPPVTALASPSALLSNPGSPGSSAWANSLKSGPLSPAMLQAPQSTEGTTPGGSVSVTGGLRLGAVPTLTSMIRTGLTPGGSGSMFPTTPGPTTAAILGLTGPQPDGGLLAGHLLPNGAPVSQGQSPAQTQQQQQQQQQQQQGHQAHLHGQNVANQNHGQTYPQRGIPANVAGAATGPTGLHQDQANAAANGLFMLSQTNGGPGGPPGGHGNANSRGKGGADSSNARDGSSGGKSGSAGAAKTSNNNEKKGVKRSRKPDPKDNAKERDTKAAKTKSKNTSTTARDTGIKNEQSDDNLDSDQDDDNDDDQNDTSNNSNGSSNNKKSKQSVDEKRKSFLERNRVAALKCRQRKKQWLSDLQNKVEYLGTENEKLASQLAMMADQVNGLKTVLLAHRDCGVPLPPNLLNMLMNERVMDPNMGDFRTTAAASAANGAQGTTQPPPNLGLLPTGLNTGIQNVPGDVALAQAHAQAQAQAHAQQQGLPQVNYRTVWPL
SIO_010081: AWJ20_4878
subclass of: SO_0000673
so part of: AWJ20_4878
location: complement(806682..808730)
location: region:806682-808730:-1
so has part: feature:806682-808730:-1:exon

XP_018736404.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:806682-808730:-1:exon

AWJ20_4879
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ICL1
locus tag: AWJ20_4879
so part of: sequence
location: <811385..>813019
location: region:811385-813019:1
so has part: feature:811385-813019:1:exon
subclass of: SO_0000010

30037058
type: Gene
SIO_000068: ncbigene

position:811385:1
position: 811385
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:813019:1
position: 813019
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:811385-813019:1:exon

AWJ20_4879
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ICL1
locus tag: AWJ20_4879
product: isocitrate lyase 1
transcript id: XM_018881980.1
SIO_010081: AWJ20_4879
subclass of: SO_0000673
so part of: AWJ20_4879
location: <811385..>813019
location: region:811385-813019:1
so has part: feature:811385-813019:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:811385-813019:1:exon

AWJ20_4879
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ICL1
locus tag: AWJ20_4879
inference: similar to AA sequence:KEGG_Orthology:K01637
note: Isocitrate lyase; catalyzes the formation of succinate and glyoxylate from isocitrate, a key reaction of the glyoxylate cycle; expression of ICL1 is induced by growth on ethanol and repressed by growth on glucose; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004451 - isocitrate lyase activity [Evidence IEA,IEA]; GO_function: GO:0004451 - isocitrate lyase activity [Evidence IMP,ISS] [PMID 1551398]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_process: GO:0019752 - carboxylic acid metabolic process [Evidence IEA]; GO_process: GO:0006097 - glyoxylate cycle [Evidence IEA,IEA]; GO_process: GO:0006097 - glyoxylate cycle [Evidence TAS] [PMID 11092862]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
codon start: 1
product: isocitrate lyase 1
translation: MSVNIKAEEQAFQDEVAQLNAWWKEPRWAQTKRVYPAEEIARKRGTLLPKYSSSTQADKLYKLLQEHDKNKTASFTYGALDPVQVTQMAKFLDTIYVSGWQSSSTASTSNEPSPDLADYPMDTVPNKVEHLWFAQQFHDRKQREDRLSVPLSQREKLPYVDYLRPIIADADTGHGGLTAIVKLTKMFIERGAAGIHIEDQAPGTKKCGHMAGKVLVPIQEHINRLIAIRASADIFGSNLLAIARTDSEAATLLTSTIDYRDHYFIVGSTNPNIPPLVDVMVEAEQRGVVGAELQKVEDNWIAQAKLKLFHEAVVDEINAGSYSNKKELTDKFLSAVGPLTNQSNNQARQLAKKLLGKDVYFDWEKPRVREGYYRYRGGTQCAVNRARAYAPYCDLIWMESKLPDYAQAKEFADGVKAAYPNKWLAYNLSPSFNWTTAMSPSDQRTYIDRLAKLGYVWQFITLAGLHTNALISHNFAKRYSEIGMQAYGGDIQQPELDSGVDVVKHQKWSGAEYVDNILKMITGGVTSTAAMGAGVTEDQFKSKA
SIO_010081: AWJ20_4879
subclass of: SO_0000673
so part of: AWJ20_4879
location: 811385..813019
location: region:811385-813019:1
so has part: feature:811385-813019:1:exon

XP_018736405.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:811385-813019:1:exon

AWJ20_4880
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RGD1
locus tag: AWJ20_4880
so part of: sequence
location: <816619..>818925
location: region:816619-818925:1
so has part: feature:816619-818925:1:exon
subclass of: SO_0000010

30037060
type: Gene
SIO_000068: ncbigene

position:816619:1
position: 816619
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:818925:1
position: 818925
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:816619-818925:1:exon

AWJ20_4880
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RGD1
locus tag: AWJ20_4880
product: Rgd1p
transcript id: XM_018881982.1
SIO_010081: AWJ20_4880
subclass of: SO_0000673
so part of: AWJ20_4880
location: <816619..>818925
location: region:816619-818925:1
so has part: feature:816619-818925:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:816619-818925:1:exon

AWJ20_4880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RGD1
locus tag: AWJ20_4880
note: GTPase-activating protein (RhoGAP) for Rho3p and Rho4p; possibly involved in control of actin cytoskeleton organization; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 10931290]; GO_component: GO:0005933 - cellular bud [Evidence IDA] [PMID 10931290]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IDA,IGI] [PMID 10526184]; GO_function: GO:0080025 - phosphatidylinositol-3,5-bisphosphate binding [Evidence IDA,IMP] [PMID 18845541]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA,IMP] [PMID 18845541]; GO_function: GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding [Evidence IDA] [PMID 21215255]; GO_function: GO:0070273 - phosphatidylinositol-4-phosphate binding [Evidence IDA,IMP] [PMID 18845541]; GO_function: GO:0010314 - phosphatidylinositol-5-phosphate binding [Evidence IDA,IMP] [PMID 18845541]; GO_process: GO:0007231 - osmosensory signaling pathway [Evidence IGI] [PMID 10590461]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0001101 - response to acid [Evidence IMP] [PMID 16087742]; GO_process: GO:0007165 - signal transduction [Evidence IEA]
codon start: 1
product: Rgd1p
translation: MDSSNTPAANNGRSASNGSRLSNNTTTSSDEGDSNVSNNAPSTAPTGSALTGPPITGPGIRKTSTVSTIGGGTGGSTSAGPASSIAPTTTTFNSSDTATTYSLPQPASSSYLLEDARLREILMSDVGTEALLKRLKQSIHAAKELSSFLKKSSNLENEHMGQVRKLASSAISEFAKPEYRQGTFAGQLNQLIKVNERSCDAARSFTTALVTMQKELANLSATVDKSRKSIKESALRHERQLLEAEQQAEKAKSKYDSLAEEFDKVRTGDPTKNKFGFMHSKGAQHEEELHKKVQTAESDYKQKVENAQRLRSEQINKNRPAAIKQLKDLILECDSAMSFQLQKYANLHEILALNRGFIVAPLKPNGAANGNLTMKEMAAKIDNELDLYNYVIGVPKTVSRLNRPLVQFQRHSTLAGAYPTGSIGNTTSSVPQSFQNNTTSPPPPISKAPGAGIGGTVGAGIGAGVGAGAGLAAGLASGPNGPGSAGAGAGAPTAPAALNSHTAIGPSPVLPPVATSEPFSVYPGNDTISPSSTIETQAVSTTASNFDTSAGPVPTVGQPGSGYPPGTVHSRPSFGTPLDVLLDYEEATVPRVVFQCIQAVDNFGLEVEGIYRTSGNNNQVQEIKRLFDLDAASVDLLHPTHGLNDIHSVAGALKLYFRELPDPLLTGQFHDEFVAAAKLPAGDERRDGVHRIVNELPDPNYTTLRHLIFHLYRVQTREASNRMSISNLAIVWGPTLMSSSLNNPEDMALEASVIETILVNAYTIFDAD
SIO_010081: AWJ20_4880
subclass of: SO_0000673
so part of: AWJ20_4880
location: 816619..818925
location: region:816619-818925:1
so has part: feature:816619-818925:1:exon

XP_018736406.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:816619-818925:1:exon

AWJ20_4881
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CUL3
locus tag: AWJ20_4881
so part of: sequence
location: complement(<819143..>821929)
location: region:819143-821929:-1
so has part: feature:819143-821929:-1:exon
subclass of: SO_0000010

30037061
type: Gene
SIO_000068: ncbigene

position:819143:-1
position: 819143
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:821929:-1
position: 821929
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:819143-821929:-1:exon

AWJ20_4881
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CUL3
locus tag: AWJ20_4881
product: cullin CUL3
transcript id: XM_018881983.1
SIO_010081: AWJ20_4881
subclass of: SO_0000673
so part of: AWJ20_4881
location: complement(<819143..>821929)
location: region:819143-821929:-1
so has part: feature:819143-821929:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:819143-821929:-1:exon

AWJ20_4881
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CUL3
locus tag: AWJ20_4881
inference: similar to AA sequence:KEGG_Orthology:K10609
note: Ubiquitin-protein ligase; forms a complex with Elc1p that polyubiquitylates monoubiquitylated RNA polymerase II to trigger its proteolysis; cullin family member with similarity to Cdc53p and human CUL3; GO_component: GO:0031463 - Cul3-RING ubiquitin ligase complex [Evidence IDA] [PMID 16675952]; GO_component: GO:0031463 - Cul3-RING ubiquitin ligase complex [Evidence IMP] [PMID 17296727]; GO_component: GO:0031461 - cullin-RING ubiquitin ligase complex [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0031625 - ubiquitin protein ligase binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 12676951]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 16675952]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 17296727]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IC] [PMID 12676951]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence ISS] [PMID 9531531]
codon start: 1
product: cullin CUL3
translation: MPKRKASSLWSPSSSPNSLKKTSSSGKVYAKAANIRTSTDLPTSSTSLPGSGSGSSSPLFEMQSSFPGPDLPISNQSSINNSRKLQNAIVGNRLLYGRAKPQTTRRLVIKSSSTTSDDSSTGNDNGKGKEPISGSGRARKMSSDAATKYYEETMEKLKTALEDILSPGLVGVAGIDKSELIPDSRGISQEELYRGVENLYRYNKAAILADLCLNTIEKYAKKLPDVLQPHLESLTAHPLVRPMFGLDSELSSASASSNSSAHSLLDTNTPDAQAVSHLYPFLRALDRLWKSWSQKIILVRNIFFYLDRAYLLPPQNKKKPIWDTGVDWFSKLILQDDVFNTIILTSISQIVNSYRVSLQSELSVVENISRMLASFKDDRSLLENEILSSAKELTNKDIDIKTIGIESFVDMLLNQITIEQRLGESLNFSTKFISTMVDNMKALLLKSRYKDVFANLKVLLDKTDYERFQSLYTFSRELDLDTELLAAFRGYVINEGTSVLENNSAKSTKKGGSNLILSLLELYHRCLEIVRRGTKFPEPYELVDSNYEDAFRRAFAEFLNKDRSGMVAEKLAKYADELLRSGIKACSEKELDEKFDELILIFRCVQGKDVFEAFYKKDFAKRLLQSKSGGLDFEKSMISKLKVECGPSFTSRLETMIKDMELSKTYATEFREQAKSSKVKSIAFNANILTQGHWPTLPETKIVLPPALVEYEKEFEKYYLAGKARRKLSWQHGLGNCIVKANFPRGTKELVLNLIQAVVLLQFNTFKDGVTTDEQVSYSQMKQSTQLDDSTLRRTLQSLACGKVRILVKDPATREVDENDTFKVNLEFSSPVYKIKVSQIAAAEAGPKEAKKIHEDVNRDRQMEIQAAIIRLMKARKKLKHVELVQQTIDQIKERGLPNVQDIKKNIEKLLEREYLERVDNTDTYIYV
SIO_010081: AWJ20_4881
subclass of: SO_0000673
so part of: AWJ20_4881
location: complement(819143..821929)
location: region:819143-821929:-1
so has part: feature:819143-821929:-1:exon

XP_018736407.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:819143-821929:-1:exon

AWJ20_4882
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TRS33
locus tag: AWJ20_4882
so part of: sequence
location: <825460..>826128
location: region:825460-826128:1
so has part: feature:825460-826128:1:exon
subclass of: SO_0000010

30037062
type: Gene
SIO_000068: ncbigene

position:825460:1
position: 825460
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:826128:1
position: 826128
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:825460-826128:1:exon

AWJ20_4882
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TRS33
locus tag: AWJ20_4882
product: Trs33p
transcript id: XM_018881984.1
SIO_010081: AWJ20_4882
subclass of: SO_0000673
so part of: AWJ20_4882
location: <825460..>826128
location: region:825460-826128:1
so has part: feature:825460-826128:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:825460-826128:1:exon

AWJ20_4882
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TRS33
locus tag: AWJ20_4882
note: Core component of transport protein particle (TRAPP) complexes I-III; TRAPP complexes are related multimeric guanine nucleotide-exchange factor for the GTPase Ypt1p, regulating ER-Golgi traffic (TRAPPI), intra-Golgi traffic (TRAPPII), endosome-Golgi traffic (TRAPPII and III) and autophagy (TRAPPIII); GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:1990070 - TRAPPI protein complex [Evidence IDA] [PMID 11239471]; GO_component: GO:1990071 - TRAPPII protein complex [Evidence IDA] [PMID 11239471]; GO_component: GO:1990072 - TRAPPIII protein complex [Evidence IDA] [PMID 20375281]; GO_component: GO:0005801 - cis-Golgi network [Evidence IDA] [PMID 19843283]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 19843283]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI] [PMID 9564032]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0006461 - protein complex assembly [Evidence IGI] [PMID 19843283]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]
codon start: 1
product: Trs33p
translation: MESDSPYINGTNKLVAASSLDFLLIEIVPLAQSIVQQLIEDAGARPGRPGSSSSANGGGAGGAGGSNVSGGISGTSSSPANSSMTADENLDDVYYRIEGYGHRVGLGLSQIFTKDRPWFTDQLDIMKFVCKELWVILYKKQIDNLKTNHRGTYVLTDTQFKYCSRMGTAYGPKETLRRATPYLWFPAGVIRGALSALGIDAAVTFDADQLPKVTFNIQTSPT
SIO_010081: AWJ20_4882
subclass of: SO_0000673
so part of: AWJ20_4882
location: 825460..826128
location: region:825460-826128:1
so has part: feature:825460-826128:1:exon

XP_018736408.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:825460-826128:1:exon

AWJ20_4883
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: OCA1
locus tag: AWJ20_4883
so part of: sequence
location: complement(<826385..>827491)
location: region:826385-827491:-1
so has part: feature:826385-827491:-1:exon
subclass of: SO_0000010

30037063
type: Gene
SIO_000068: ncbigene

position:826385:-1
position: 826385
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:827491:-1
position: 827491
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:826385-827491:-1:exon

AWJ20_4883
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: OCA1
locus tag: AWJ20_4883
product: putative tyrosine protein phosphatase OCA1
transcript id: XM_018881985.1
SIO_010081: AWJ20_4883
subclass of: SO_0000673
so part of: AWJ20_4883
location: complement(<826385..>827491)
location: region:826385-827491:-1
so has part: feature:826385-827491:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:826385-827491:-1:exon

AWJ20_4883
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: OCA1
locus tag: AWJ20_4883
inference: similar to AA sequence:KEGG_Orthology:K18043
codon start: 1
product: putative tyrosine protein phosphatase OCA1
translation: MSIPSQSNGELASGQNNPAISSSIESQQQKSSGVSGAIDRTNGLTNTNALHSGADTTAPTTSTTSTTYSSSTRTNKTNTDSLLNTGTGSTNTLTDSITNTIGSVIAVADTGSSVVPNTSTEHNTTILLDQNTTTTNDSGTGSRNNGSSNNITTSTTSNSTTNDSTISSNTTSSNNTTVDKSSTTLAEIRRPPPVRLVPPLNFALAERQLYRSGQPAPINFPFLRGLNLKTIVWLAVEDPSDAFLGFADNNEIEFHHLGLVTEGGNPWDQLTESSIVSALDIIMNVNNYPLLVCCGMGRHRTGTVIGCLRRVQGWNFASISDEYRRFVGAKGGRVLIELHIEAFDTKSVHINLDYAPDWFKKTLPPPGA
SIO_010081: AWJ20_4883
subclass of: SO_0000673
so part of: AWJ20_4883
location: complement(826385..827491)
location: region:826385-827491:-1
so has part: feature:826385-827491:-1:exon

XP_018736409.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:826385-827491:-1:exon

AWJ20_4884
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RAS1
locus tag: AWJ20_4884
so part of: sequence
location: complement(<829550..>830287)
location: region:829550-830287:-1
so has part: feature:829550-830287:-1:exon
subclass of: SO_0000010

30037064
type: Gene
SIO_000068: ncbigene

position:829550:-1
position: 829550
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:830287:-1
position: 830287
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:829550-830287:-1:exon

AWJ20_4884
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RAS1
locus tag: AWJ20_4884
product: Ras family GTPase RAS1
transcript id: XM_018881986.1
SIO_010081: AWJ20_4884
subclass of: SO_0000673
so part of: AWJ20_4884
location: complement(<829550..>830287)
location: region:829550-830287:-1
so has part: feature:829550-830287:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:829550-830287:-1:exon

AWJ20_4884
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RAS1
locus tag: AWJ20_4884
inference: similar to AA sequence:KEGG_Orthology:K07827
note: GTPase involved in G-protein signaling in adenylate cyclase activation; plays a role in cell proliferation; localized to the plasma membrane; homolog of mammalian RAS proto-oncogenes; relative distribution to the nucleus increases upon DNA replication stress; RAS1 has a paralog, RAS2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 20162532]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 3513173]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 14674766]; GO_function: GO:0003924 - GTPase activity [Evidence IMP] [PMID 6327067]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0007189 - adenylate cyclase-activating G-protein coupled receptor signaling pathway [Evidence IDA] [PMID 3891097]; GO_process: GO:0045762 - positive regulation of adenylate cyclase activity [Evidence IGI] [PMID 2981630]; GO_process: GO:0045762 - positive regulation of adenylate cyclase activity [Evidence IGI] [PMID 3891097]; GO_process: GO:0097271 - protein localization to bud neck [Evidence IGI] [PMID 12782684]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 8034612]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]
codon start: 1
product: Ras family GTPase RAS1
translation: MLVREYKLVVVGGGGVGKSALTIQLIQSQFVDEYDPTIEDSYRKQCLIDDEVVILDVLDTAGQEEYSAMREQYMRTGEGFLIVYSVTSRSSFDEVKNFHQQILRVKDQDAFPIVIIGNKIDLENERQVSFEEGQQLADSLGCPFLETSAKRRINVDDSFYALVTEVRKFNRGDSGSERTGSIKSKPSRPNNTSRSGTTTLNHEAAYYSGNTIGGGPTNMAARSKRDPGTRYDEKPDNDGCCCIIS
SIO_010081: AWJ20_4884
subclass of: SO_0000673
so part of: AWJ20_4884
location: complement(829550..830287)
location: region:829550-830287:-1
so has part: feature:829550-830287:-1:exon

XP_018736410.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:829550-830287:-1:exon

AWJ20_4885
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PHO23
locus tag: AWJ20_4885
so part of: sequence
location: complement(<838397..>840295)
location: region:838397-840295:-1
so has part: feature:838397-840295:-1:exon
subclass of: SO_0000010

30037065
type: Gene
SIO_000068: ncbigene

position:838397:-1
position: 838397
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:840295:-1
position: 840295
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:838397-840295:-1:exon

AWJ20_4885
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PHO23
locus tag: AWJ20_4885
product: Pho23p
transcript id: XM_018881987.1
SIO_010081: AWJ20_4885
subclass of: SO_0000673
so part of: AWJ20_4885
location: complement(<838397..>840295)
location: region:838397-840295:-1
so has part: feature:838397-840295:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:838397-840295:-1:exon

AWJ20_4885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PHO23
locus tag: AWJ20_4885
note: Component of the Rpd3L histone deacetylase complex; involved in transcriptional regulation of PHO5; affects termination of snoRNAs and cryptic unstable transcripts (CUTs); C-terminus has similarity to human candidate tumor suppressor p33(ING1) and its isoform ING3; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 16286007]; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 16286008]; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 16314178]; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0070210 - Rpd3L-Expanded complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0000118 - histone deacetylase complex [Evidence IDA] [PMID 12672825]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0035064 - methylated histone binding [Evidence IDA] [PMID 16728974]; GO_function: GO:0035064 - methylated histone binding [Evidence IDA] [PMID 17142463]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA,IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IMP,IPI,ISS] [PMID 10805724]; GO_process: GO:0061188 - negative regulation of chromatin silencing at rDNA [Evidence IMP] [PMID 16286008]; GO_process: GO:0061186 - negative regulation of chromatin silencing at silent mating-type cassette [Evidence IMP] [PMID 16286008]; GO_process: GO:0031939 - negative regulation of chromatin silencing at telomere [Evidence IMP] [PMID 16286008]; GO_process: GO:0031939 - negative regulation of chromatin silencing at telomere [Evidence IMP] [PMID 16314178]; GO_process: GO:0031939 - negative regulation of chromatin silencing at telomere [Evidence IMP] [PMID 19372273]; GO_process: GO:0016479 - negative regulation of transcription from RNA polymerase I promoter [Evidence IMP] [PMID 19270272]; GO…
codon start: 1
product: Pho23p
translation: MEEQEQEVAYRGGGRLGKRNAAGQLTRAAPTDIYPGLNDMSDALEAIPMDIVRHFTLLKEIDAKCVGTTPLLGELIVEFLSLPVPSPATLQAALAASSSFGSNEMQGQEPTNPAAAGSATGSGVAPGNAPVNGENDTSNSINNGNNNNNNNGDGNPANNNSNGNNGDNSSNIGNNVQESQTDGASNNTANSGNTSAEPAVTGSNVLTVSEEEIASIVKREELLAQIRRLINELVPCLEEKMHVAGVAADAMARHVARIDYDFDLICNNEIPERIQVGSANHPAFIAETRLANEQQKGNQTSRSESRREAMAAKKAAAAADGLTGSAATGSGGAKGGRNSTPVAGKGSGSAVSSAGSTTAGGAGSAFGSGATSGRGRGAGKNNGSASAGGNVSANGGAAGSGSVSSNYGNGLSHSNTPAPKRRKGAASAGNTTAGQPSALSNNSSNATAYNSYNYEYQQSYAGQPGTNNGPGRPAGSNNGSAAAGNAGQTNQYNEYANGAGNTGTGSYNGQGYNSNSNENSVIDGYEGSKYENEESISRPTTPAGGNGRRGGRQRTRTVGANSNSSSANAKDDGEPVYCYCQQVSFGEMVGCDGPECKREWFHLPCIGLSSPPKGQWFCEDCAAKYKKPAVKR
SIO_010081: AWJ20_4885
subclass of: SO_0000673
so part of: AWJ20_4885
location: complement(838397..840295)
location: region:838397-840295:-1
so has part: feature:838397-840295:-1:exon

XP_018736411.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:838397-840295:-1:exon

AWJ20_4886
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: AEP3
locus tag: AWJ20_4886
so part of: sequence
location: <840788..>842791
location: region:840788-842791:1
so has part: feature:840788-842791:1:exon
subclass of: SO_0000010

30037066
type: Gene
SIO_000068: ncbigene

position:840788:1
position: 840788
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:842791:1
position: 842791
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840788-842791:1:exon

AWJ20_4886
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: AEP3
locus tag: AWJ20_4886
product: Aep3p
transcript id: XM_018881988.1
SIO_010081: AWJ20_4886
subclass of: SO_0000673
so part of: AWJ20_4886
location: <840788..>842791
location: region:840788-842791:1
so has part: feature:840788-842791:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:840788-842791:1:exon

AWJ20_4886
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: AEP3
locus tag: AWJ20_4886
note: Peripheral mitochondrial inner membrane protein; may facilitate use of unformylated tRNA-Met in mitochondrial translation initiation; stabilizes the bicistronic AAP1-ATP6 mRNA; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 14742425]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 14742425]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0016071 - mRNA metabolic process [Evidence IMP] [PMID 14742425]; GO_process: GO:0070124 - mitochondrial translational initiation [Evidence IGI] [PMID 19843529]
codon start: 1
product: Aep3p
translation: MKNVSGQVLFPVARSLRRSFLVHRRTASTSTHGQHVPEKSDPTSDLVADVGKSATDSLEKTEKLPEKESLQSPNLLQLSPDLPKFYQKLNDELRRYHQLMPLRTSAGDETQSHSQNTLSTLLTMEQEAKIELDQTANANERERQKKKEKEHRQLSRQTQINASPTYIQSIIEVLTSMRTALTSSNNEMVLERKFTSKPLPKFPTQWSREGLVAYLQQLTQYQHTNSKYSSPNGLISSIVKDLLRVNNPSTMNHLSTEAFNIGISYHARISDIRSCRQLFQDMLSSGISVNTDTYNILLMSCRYRLGNVNDNWKVHPLRVVDGFLKQMRSKGIPANIDTWNIVLGTVPEGSNKSRVLTEMSKKNVPLSRRGLATCVGDIVQQVGPKLAMVYLDKQLEKYNVGIDTVNTIISGLLNDDKLKADKAGIKFTPSVETVDVAWKYLHYAISKWDLTPSTSVLNTFGRFFAANGKLDWFIGLYSAMVSHPEWNIQPNCITYQYLLEAAVRVPFHPYKYEMVETINRISYKVPRTKQYQNWLLRAKTQFDYYNSLNLLSKNTFSMNRHATPETTQNFVQAQHILKWADQTFKPDYTNVLPRLQIAKLLNLFPSDIPAEETQQHTRQSRRVYSQTTKQFRATTSTQETATKQRLIRKGPYQKYIDDLEEEGLIEG
SIO_010081: AWJ20_4886
subclass of: SO_0000673
so part of: AWJ20_4886
location: 840788..842791
location: region:840788-842791:1
so has part: feature:840788-842791:1:exon

XP_018736412.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:840788-842791:1:exon

AWJ20_4887
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: NCR1
locus tag: AWJ20_4887
so part of: sequence
location: <846302..>849751
location: region:846302-849751:1
so has part: feature:846302-849751:1:exon
subclass of: SO_0000010

30037067
type: Gene
SIO_000068: ncbigene

position:846302:1
position: 846302
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:849751:1
position: 849751
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:846302-849751:1:exon

AWJ20_4887
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: NCR1
locus tag: AWJ20_4887
product: Ncr1p
transcript id: XM_018881989.1
SIO_010081: AWJ20_4887
subclass of: SO_0000673
so part of: AWJ20_4887
location: <846302..>849751
location: region:846302-849751:1
so has part: feature:846302-849751:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:846302-849751:1:exon

AWJ20_4887
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: NCR1
locus tag: AWJ20_4887
inference: similar to AA sequence:KEGG_Orthology:K12385
note: Vacuolar membrane protein; transits through the biosynthetic vacuolar protein sorting pathway, involved in sphingolipid metabolism; cells lacking Ncr1p exhibit high levels of long chain bases (LCB), similar to the accumulation of high amounts of lipids observed in patients with Neimann-Pick C, a disease caused by loss-of-function mutations in NPC1, the functional ortholog of Ncr1p; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14562095]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 16138904]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0008158 - hedgehog receptor activity [Evidence IEA]; GO_function: GO:0046624 - sphingolipid transporter activity [Evidence IMP] [PMID 14970192]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0006665 - sphingolipid metabolic process [Evidence IEA]; GO_process: GO:0006665 - sphingolipid metabolic process [Evidence IMP] [PMID 14970192]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Ncr1p
translation: MNFPWLNKTDEDSRDPEGVKRSDVDMHSCGDEDERYRCACSDCSVACPELEPVRDGGKGRLAVSRCTLFGGRVLCFSLAVWVVYVILLSFLLMGLWGYRLVRGRVVKANESLSLLYDDGEIDSEDEYEDDFYQRPAFLRRHSIGTRRTSDGLEEDDDYDDDDDDANDNRRVANVIYNPRHHHSTAPYKLNTVLQDGFSRLGLICASFPAVVISFSLLVVVILSFGLIRFQLEIDPVKLWVSPTSLEYSEKQHFDSNFGPFYRAQQMYLVNDTGPVLSDYGTLQWWFSVEERIGRLRSSHYGVSYNDLCLKPLGDACVIQSVTQYFGGDINAVPENWQDKLQSCADSPVSCLPPFQQPLKKEMVFGGYIGDDVITSKALVISLVVENSDDPEKLAVAQEWEELLEMFLFSVQKEAAYRGLRLSFNVEISLEKELNKSSNTDVRIVVLSYVFMFLYASLALGSVTPQLSRRYLVKSKFSLGLFGIFVVLLSVISSVGLFSYFGIKCTLIIAEVIPFLILAVGVDNIFLLTHGLETVNLTHPNLSIEERLALALGHVGPSILLSTLCEVSAFALGASVAMPAVRNFAIYSAGAVFFNSLLQMTMFMSALSLDQRRSEDDRADCFPCIRIPRISGISRPSFSSFTARVLSSPSIFDGQPGPLPSGNHGGTNVFSDIIRKKYAPYILSPQVKPIVIAIFTGWLAISLSLLPHIELGLDQRLAVPSDSYLVDYFNDLYDYFGSGPPVYFVTHDFKVTDRSSQQALCGRFSTCKEFSLMNILEQERKRPAVSYINDPAASWIDDFLQWLNPDLDDCCRFKKGTNETEVCAPHASPRTCEVCYLDKKWDITMGGLPNGDEEFLKYFNIWIEAPSDPCPLGGKAPYSHSVVVDDDSSSISTSNFRTAHTPLRSQSDFINAYASARRIAQSIEDHTGVPTYPYSTFYIFFAQYSTIIYDTFRLLSVALFITFILSTILLGSIRTAFSVCIVVACIVTNIGGIMALWDISLNAVSLVNLVICVGIGIEFCIHVARAYTFTPRMDIAGYTAVSKEMRAFNALTGVGGSVFGGIALTKLIGVCVLAFTRSKIFEVYYFRMWTALVLVASTHSLVFLPVVLTYIGGRGYLIDGGDEGVPGDLASRLYGSEENYGTEPEEDFLD
SIO_010081: AWJ20_4887
subclass of: SO_0000673
so part of: AWJ20_4887
location: 846302..849751
location: region:846302-849751:1
so has part: feature:846302-849751:1:exon

XP_018736413.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:846302-849751:1:exon

AWJ20_4888
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4888
so part of: sequence
location: complement(<850029..>850099)
location: region:850029-850099:-1
so has part: feature:850029-850099:-1:exon
subclass of: SO_0000663

30037068
type: Gene
SIO_000068: ncbigene

position:850029:-1
position: 850029
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:850099:-1
position: 850099
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:850029-850099:-1:exon

AWJ20_4888
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_4888
product: tRNA-Gly
SIO_010081: AWJ20_4888
subclass of: SO_0000673
so part of: AWJ20_4888
location: complement(<850029..>850099)
location: region:850029-850099:-1
so has part: feature:850029-850099:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:850029-850099:-1:exon

AWJ20_4889
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: HMT1
locus tag: AWJ20_4889
so part of: sequence
location: <850799..>851839
location: region:850799-851839:1
so has part: feature:850799-851839:1:exon
subclass of: SO_0000010

30037069
type: Gene
SIO_000068: ncbigene

position:850799:1
position: 850799
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:851839:1
position: 851839
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:850799-851839:1:exon

AWJ20_4889
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: HMT1
locus tag: AWJ20_4889
product: protein-arginine omega-N methyltransferase HMT1
transcript id: XM_018881990.1
SIO_010081: AWJ20_4889
subclass of: SO_0000673
so part of: AWJ20_4889
location: <850799..>851839
location: region:850799-851839:1
so has part: feature:850799-851839:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:850799-851839:1:exon

AWJ20_4889
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: HMT1
locus tag: AWJ20_4889
inference: similar to AA sequence:KEGG_Orthology:K11434
note: Nuclear SAM-dependent mono- and asymmetric methyltransferase; modifies hnRNPs, including Npl3p and Hrp1p, affecting their activity and nuclear export; methylates U1 snRNP protein Snp1p and ribosomal protein Rps2p; interacts genetically with genes encoding components of Rpd3(L) and this interaction is important for Rpd3 recruitment to the subtelomeric region; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8668183]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0035242 - protein-arginine omega-N asymmetric methyltransferase activity [Evidence IDA,IMP] [PMID 8647869]; GO_function: GO:0035241 - protein-arginine omega-N monomethyltransferase activity [Evidence IDA,IMP] [PMID 8647869]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IGI] [PMID 10952997]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IGI] [PMID 8668183]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0060567 - negative regulation of DNA-templated transcription, termination [Evidence IMP] [PMID 20053728]; GO_process: GO:0018216 - peptidyl-arginine methylation [Evidence IMP] [PMID 18515076]; GO_process: GO:0018216 - peptidyl-arginine methylation [Evidence IMP] [PMID 20035717]; GO_process: GO:0018216 - peptidyl-arginine methylation [Evidence IDA] [PMID 22997150]; GO_process: GO:0018216 - peptidyl-arginine methylation [Evidence IDA,IMP] [PMID 8647869]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 20053728]; GO_process: GO:0006479 - protein methylation [Evidence IEA]
codon start: 1
product: protein-arginine omega-N methyltransferase HMT1
translation: MSDSMTDVSPAPEASNGDLNYSDQHYFNSYDHFGIHEEMLKDDVRTTSYRNAIYQNRHMFKDKVVLDVGCGTGILSMFAARSGAKHVIGVDMSNIIHMARKIVDLNGFSNKITLLHGKMEEVELPYPKVDIIISEWMGYFLLYESMLDTVLIARDKYLVEGGLIFPDKATIYAAAIEDGDYKEEKIGFWNDVYGFDYSPFQELALADPLVDTVELRAVITDPCPIFDLDLYTITIEDLAFSREFSLKARRDDIAHAIVAWFDIEFSKCHKPIKFSTGPHAKYTHWKQTVFYLADEVLIKNGEYITGRLTSGPNSENPRNLDITITHKLETEDEKRKSEGEAHYVMK
SIO_010081: AWJ20_4889
subclass of: SO_0000673
so part of: AWJ20_4889
location: 850799..851839
location: region:850799-851839:1
so has part: feature:850799-851839:1:exon

XP_018736414.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:850799-851839:1:exon

AWJ20_4890
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: VHC1
locus tag: AWJ20_4890
so part of: sequence
location: complement(<852123..>855020)
location: region:852123-855020:-1
so has part: feature:852123-855020:-1:exon
subclass of: SO_0000010

30037071
type: Gene
SIO_000068: ncbigene

position:852123:-1
position: 852123
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:855020:-1
position: 855020
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:852123-855020:-1:exon

AWJ20_4890
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: VHC1
locus tag: AWJ20_4890
product: Vhc1p
transcript id: XM_018881992.1
SIO_010081: AWJ20_4890
subclass of: SO_0000673
so part of: AWJ20_4890
location: complement(<852123..>855020)
location: region:852123-855020:-1
so has part: feature:852123-855020:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:852123-855020:-1:exon

AWJ20_4890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: VHC1
locus tag: AWJ20_4890
inference: similar to AA sequence:KEGG_Orthology:K14429
note: Vacuolar membrane cation-chloride cotransporter (CCC); likely mediates K+ and Cl- cotransport into the vacuole; has a role in potassium homeostasis and salt tolerance; similar to mammalian electroneutral Na(+)-(K+)-C1- cotransporter family; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19001347]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0031166 - integral component of vacuolar membrane [Evidence IDA] [PMID 23022132]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0015379 - potassium:chloride symporter activity [Evidence IMP,ISA] [PMID 23022132]; GO_process: GO:0055075 - potassium ion homeostasis [Evidence IGI] [PMID 23022132]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0034486 - vacuolar transmembrane transport [Evidence IMP] [PMID 23022132]
codon start: 1
product: Vhc1p
translation: MDSKFGGAAYTGLSWSTFKDNFFPRFTSGAAGSQLPGKENFQDMFGIFFPATSGIFAGASMSGDLKAPSKSIPKGTLWGLLVTFICYCLVILSIGSTVSRDLLYRDLEIIRNSNLSPMLIIMGEFSTSLFSALMGVVGAAKLLQAIARDNLLPYTSWFGKGYSTDDNPLPAIFLSYILTQITLLFDINQIAVFITMAYLMTFVVTNLACFLLKIASAPNFRPSFKYFNSTSAGLGAALCVLSMFVADGISASAMICVIAMLFLTIHYISPPKPWGDVSQTLIYHQVRKYLLRLRQDHVKFWRPQILLLVDDPRTSWSLIHFCNHLKKGGLYILGHVMVTQDFTQSFPEMKKQQNSWMKLRDVSNIKGFVQIGAGPNVVWGARNVYLGSGLGGMKPNITVLGFFELKNHYPSRHNNSHCRGDESLTGQHRSDEAIQIEDLPTDSCRKEPSITVTEWVHIIEDLLTMQANIAIAKGFPRLEFPTKESLNASLSDTKGYIDLYPIQMSAQIVDENGAMSALSTNFDTYTLILQLGAILHTVPVWKKNHILRVVVFVEFGEDVASEESRIKLLLEKLRINAEVLVLCLSAGNVCAYETIIHGKPDTSGRVHRLLGEDEWWIELQEARSSNIDHGIHINSNVGDLIPDENLGNEANHQLRKIIDAKKRRHTVSELQRLGVSFSMHTNNLMKSNLTKHGYDSDSSSSDSEVEFEDADDSLEMAEPRLFVRRRASSGGSLPGSTRPVFTTPSQPTSEVARQIAAAALSAKQTKPSLIRTNSGTGSIKSKKLKPHFLGNTMPDTRVVEEPEAGRRSIMFDETSTAPSSNRPSRPSSIKSGLSGLSTNKVTFDEQPAAALSQKSPLSTMTSQKVSSSSNTSLTLTDTGVPEDEERDLSFNDLPAKAQHVILNDMMNQTSKDSVVIFSTLPAPSPGTHKSEDESLEYVESLELWCQDLPPMILLHSQSMTVTTAL
SIO_010081: AWJ20_4890
subclass of: SO_0000673
so part of: AWJ20_4890
location: complement(852123..855020)
location: region:852123-855020:-1
so has part: feature:852123-855020:-1:exon

XP_018736415.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:852123-855020:-1:exon

AWJ20_4891
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: VHC1
locus tag: AWJ20_4891
so part of: sequence
location: complement(<855368..>856006)
location: region:855368-856006:-1
so has part: feature:855368-856006:-1:exon
subclass of: SO_0000010

30037072
type: Gene
SIO_000068: ncbigene

position:855368:-1
position: 855368
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:856006:-1
position: 856006
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:855368-856006:-1:exon

AWJ20_4891
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: VHC1
locus tag: AWJ20_4891
product: Vhc1p
transcript id: XM_018881993.1
SIO_010081: AWJ20_4891
subclass of: SO_0000673
so part of: AWJ20_4891
location: complement(<855368..>856006)
location: region:855368-856006:-1
so has part: feature:855368-856006:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:855368-856006:-1:exon

AWJ20_4891
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: VHC1
locus tag: AWJ20_4891
note: Vacuolar membrane cation-chloride cotransporter (CCC); likely mediates K+ and Cl- cotransport into the vacuole; has a role in potassium homeostasis and salt tolerance; similar to mammalian electroneutral Na(+)-(K+)-C1- cotransporter family; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19001347]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0031166 - integral component of vacuolar membrane [Evidence IDA] [PMID 23022132]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0015379 - potassium:chloride symporter activity [Evidence IMP,ISA] [PMID 23022132]; GO_process: GO:0055075 - potassium ion homeostasis [Evidence IGI] [PMID 23022132]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0034486 - vacuolar transmembrane transport [Evidence IMP] [PMID 23022132]
codon start: 1
product: Vhc1p
translation: MAPGGLSAGGKSSRPGTGSDVSSEISRSTSPKIALDDSVLLSANAIHGLDSRGGDSSDYDTVTSKTGLLHRKSKVKYGSTGGESFEPSHSLNRSITVVEEQQEKLHRNSQYSKMNTLEGVFVPTVLNVLSILMFLRFGFILGQTGILGMMVLLLASYGVNLLTTLSISAISTNGTVRGGGAYYMISRSLGPEFGGSIGVIFYIGQVLNRCVL
SIO_010081: AWJ20_4891
subclass of: SO_0000673
so part of: AWJ20_4891
location: complement(855368..856006)
location: region:855368-856006:-1
so has part: feature:855368-856006:-1:exon

XP_018736416.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:855368-856006:-1:exon

AWJ20_4892
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ABD1
locus tag: AWJ20_4892
so part of: sequence
location: complement(<857008..>858786)
location: region:857008-858786:-1
so has part: feature:857008-858786:-1:exon
subclass of: SO_0000010

30037073
type: Gene
SIO_000068: ncbigene

position:857008:-1
position: 857008
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:858786:-1
position: 858786
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:857008-858786:-1:exon

AWJ20_4892
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ABD1
locus tag: AWJ20_4892
product: Abd1p
transcript id: XM_018881994.1
SIO_010081: AWJ20_4892
subclass of: SO_0000673
so part of: AWJ20_4892
location: complement(<857008..>858786)
location: region:857008-858786:-1
so has part: feature:857008-858786:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:857008-858786:-1:exon

AWJ20_4892
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ABD1
locus tag: AWJ20_4892
inference: similar to AA sequence:KEGG_Orthology:K00565
note: Methyltransferase; catalyzes the transfer of a methyl group from S-adenosylmethionine to the GpppN terminus of capped mRNA; nuclear protein that relocalizes to the cytosol in response to hypoxia; GO_component: GO:0016591 - DNA-directed RNA polymerase II, holoenzyme [Evidence IPI] [PMID 11018011]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 11018011]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004482 - mRNA (guanine-N7-)-methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004482 - mRNA (guanine-N7-)-methyltransferase activity [Evidence IDA,ISS] [PMID 7623811]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006370 - 7-methylguanosine mRNA capping [Evidence IEA,IEA]; GO_process: GO:0006370 - 7-methylguanosine mRNA capping [Evidence IDA] [PMID 7623811]; GO_process: GO:0036265 - RNA (guanine-N7)-methylation [Evidence IEA,IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 14967145]
codon start: 1
product: Abd1p
translation: MYDPARDAWNASTENSADEKDLEKVPNVGGDGDESGDTEDEAPVRIETRGIETHDQNNDDYDGSTEQPESLVDRENNGKSRTSTGKAVIEAVEAVAEAAVDTLTKAASATAAVLAEPVLSELDGEVIDEKNSQSASSTASQKSTVDEREKRADVKKQRSPSPTSPPKELKKPSQRADVGERDREALEPDEKLNRTSANGGEKKENISEDSNNSEFRSTSRTTESTESKEETHSTSQKSTIDDKETTDNVKRQRSPSPASPPRKLKKPSRRSDVGERDRKAQELREKLDKAAADDIRAHYNERPNKSIEERTQSPIIKLRSFNNLIKSVLIQIFSRPRQVVLDIGCGKGGDLQKWSKQRISGLIGVDIADISIEQAKERYEHLRQKSFWADFCVGDAFERTIEDIVHPDAFPVDFVSSQFTIHYSFENEQRARTMLSNVSRALKPGGTFIGTTPDSDRLLEHISKLPAGVREWGNSAYRIQFEDEPPKSNDDLKDIFGYKYNFFLDDAVTNVVEFMVPFEAFTELAKEYGLRLVLRRNFLDFFNDELASRRGRDRILFFCRILKVYKEDGTPGIEGDQREAAGIYTVFAFEKE
SIO_010081: AWJ20_4892
subclass of: SO_0000673
so part of: AWJ20_4892
location: complement(857008..858786)
location: region:857008-858786:-1
so has part: feature:857008-858786:-1:exon

XP_018736417.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:857008-858786:-1:exon

AWJ20_4893
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CMC1
locus tag: AWJ20_4893
so part of: sequence
location: complement(<865737..>866093)
location: region:865737-866093:-1
so has part: feature:865737-866093:-1:exon
subclass of: SO_0000010

30037074
type: Gene
SIO_000068: ncbigene

position:865737:-1
position: 865737
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:866093:-1
position: 866093
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:865737-866093:-1:exon

AWJ20_4893
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CMC1
locus tag: AWJ20_4893
product: COX assembly mitochondrial protein
transcript id: XM_018881995.1
SIO_010081: AWJ20_4893
subclass of: SO_0000673
so part of: AWJ20_4893
location: complement(<865737..>866093)
location: region:865737-866093:-1
so has part: feature:865737-866093:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:865737-866093:-1:exon

AWJ20_4893
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CMC1
locus tag: AWJ20_4893
inference: similar to AA sequence:KEGG_Orthology:K18171
codon start: 1
product: COX assembly mitochondrial protein
translation: MSSTPATAHTNLSSETSSTTATSASSGRKVPAWMLAPYEEKEVRARCQEQADRMCADKFLAFGRCSEKNQLLFSWKCAEQKKAMIDCVAYWGSTEKFEEVQDRYITEKQEKLRKEGRL
SIO_010081: AWJ20_4893
subclass of: SO_0000673
so part of: AWJ20_4893
location: complement(865737..866093)
location: region:865737-866093:-1
so has part: feature:865737-866093:-1:exon

XP_018736418.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:865737-866093:-1:exon

AWJ20_4894
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: spc24
locus tag: AWJ20_4894
so part of: sequence
location: <866778..>867416
location: region:866778-867416:1
so has part: feature:866778-867416:1:exon
subclass of: SO_0000010

30037075
type: Gene
SIO_000068: ncbigene

position:866778:1
position: 866778
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:867416:1
position: 867416
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:866778-867416:1:exon

AWJ20_4894
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: spc24
locus tag: AWJ20_4894
product: spindle pole body protein Spc24
transcript id: XM_018881996.1
SIO_010081: AWJ20_4894
subclass of: SO_0000673
so part of: AWJ20_4894
location: <866778..>867416
location: region:866778-867416:1
so has part: feature:866778-867416:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:866778-867416:1:exon

AWJ20_4894
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: spc24
locus tag: AWJ20_4894
inference: similar to AA sequence:KEGG_Orthology:K11557
codon start: 1
product: spindle pole body protein Spc24
translation: MSDELGNYFPLIQSTMEHFEIQEDIDTCDRTEQMFQRIQEKRKKITDESYDTLRALSRKLELAKAKTDPSEKSAAHREATQRLVQLDREKFALAKSLNELEQSNTSSQTTLDILRQELEDLKDADSIEETSSQYVDNAAVLKLKFYRSLGLRFSDDEDETGLGSGKTSADGQSASTGLRVFIQSSTENRVHVFSIDKNYSSQFVANYIWDHM
SIO_010081: AWJ20_4894
subclass of: SO_0000673
so part of: AWJ20_4894
location: 866778..867416
location: region:866778-867416:1
so has part: feature:866778-867416:1:exon

XP_018736419.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:866778-867416:1:exon

AWJ20_4895
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4895
so part of: sequence
location: complement(<867689..>869290)
location: region:867689-869290:-1
so has part: feature:867689-869290:-1:exon
subclass of: SO_0000010

30037076
type: Gene
SIO_000068: ncbigene

position:867689:-1
position: 867689
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:869290:-1
position: 869290
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:867689-869290:-1:exon

AWJ20_4895
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4895
product: Uncharacterized protein YKL098W
transcript id: XM_018881997.1
SIO_010081: AWJ20_4895
subclass of: SO_0000673
so part of: AWJ20_4895
location: complement(<867689..>869290)
location: region:867689-869290:-1
so has part: feature:867689-869290:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:867689-869290:-1:exon

AWJ20_4895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4895
codon start: 1
product: Uncharacterized protein YKL098W
translation: MVGSFASLCEQVSVEYENFDVNVLIALVVAAVGRRHLVIQSKRVSATREVLQTLARDVLGFREDRATVVVHCNADTTWHQLAKSILVNGNKFSHETECEIAGSGSPNLFGDGNGSGNVNNEESVKREGVNGSPNINDEGSVHPNVSVPTFLIIENLDKTAKLVQTMMISTLVERKLVVNKKSYPLPEDFVLVIIGHGHNLVPHLRDYMLLEHVVETDDDHGLNADQPAHTGQMSSAVGAGINSDNVGGGSANVSAGGSGNGSTSATAGTGNGIGGIGISTGSTESVNTPLTDIDRRGMSDPQLVQPVTRASESNSVLTPKGYYSGGGEDDSYRRHSETAIVNATTQQGSGLYPGKHDLSALTKSNTNISNKSTSSFGVGVVSRRPTLPDFSPPPGLHSSDNADTLSFQNLLSSMADKIPLITIAANIQRYMQDIVVALRTHRLVRSGVSPQAVKDFHYLVRALSVLHDYEFVTPSIVSISARKLFPLRIQLCEPTDEPSLSYGGDIDLVTQWMNKWDEDLVIEEILANVPCAM
SIO_010081: AWJ20_4895
subclass of: SO_0000673
so part of: AWJ20_4895
location: complement(867689..869290)
location: region:867689-869290:-1
so has part: feature:867689-869290:-1:exon

XP_018736420.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:867689-869290:-1:exon

AWJ20_4896
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: UTP11
locus tag: AWJ20_4896
so part of: sequence
location: <869640..>870392
location: region:869640-870392:1
so has part: feature:869640-870392:1:exon
subclass of: SO_0000010

30037077
type: Gene
SIO_000068: ncbigene

position:869640:1
position: 869640
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:870392:1
position: 870392
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:869640-870392:1:exon

AWJ20_4896
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: UTP11
locus tag: AWJ20_4896
product: Utp11p
transcript id: XM_018881998.1
SIO_010081: AWJ20_4896
subclass of: SO_0000673
so part of: AWJ20_4896
location: <869640..>870392
location: region:869640-870392:1
so has part: feature:869640-870392:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:869640-870392:1:exon

AWJ20_4896
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: UTP11
locus tag: AWJ20_4896
inference: similar to AA sequence:KEGG_Orthology:K14769
note: Subunit of U3-containing Small Subunit (SSU) processome complex; involved in production of 18S rRNA and assembly of small ribosomal subunit; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0006364 - rRNA processing [Evidence IEA,IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]
codon start: 1
product: Utp11p
translation: MVALTHNIAKKQHRERAQPTERRKWGLLEKKKDYKLRSQDFHKKENHLKLLRRKATERNPDEFYHSMVNKKTDNRGILITERGNEVLSNGAAQLLKTQDSSYVRTLTSGEIRKIEKLETELTFGGQGEHTVFVDSDSQAKSFDAAEYFGTHKSLLNRRENRLRKNQLEEQDLSKTTLIPTDVDERTEQKLRKQKMAKYKELDQRLERQQQLSQVQQQMDLQRELMKKGDKKKIITKDGKQTWKWKNVRKR
SIO_010081: AWJ20_4896
subclass of: SO_0000673
so part of: AWJ20_4896
location: 869640..870392
location: region:869640-870392:1
so has part: feature:869640-870392:1:exon

XP_018736421.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:869640-870392:1:exon

AWJ20_4897
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: HAS1
locus tag: AWJ20_4897
so part of: sequence
location: complement(<871443..>873332)
location: region:871443-873332:-1
so has part: feature:871443-873332:-1:exon
subclass of: SO_0000010

30037078
type: Gene
SIO_000068: ncbigene

position:871443:-1
position: 871443
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:873332:-1
position: 873332
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:871443-873332:-1:exon

AWJ20_4897
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: HAS1
locus tag: AWJ20_4897
product: ATP-dependent RNA helicase HAS1
transcript id: XM_018881999.1
SIO_010081: AWJ20_4897
subclass of: SO_0000673
so part of: AWJ20_4897
location: complement(<871443..>873332)
location: region:871443-873332:-1
so has part: feature:871443-873332:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:871443-873332:-1:exon

AWJ20_4897
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: HAS1
locus tag: AWJ20_4897
inference: similar to AA sequence:KEGG_Orthology:K13179
note: ATP-dependent RNA helicase; involved in the biogenesis of 40S and 60S ribosome subunits; localizes to both the nuclear periphery and nucleolus; highly enriched in nuclear pore complex fractions; constituent of 66S pre-ribosomal particles; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 10684247]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10684247]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15049817]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA] [PMID 15718299]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 15718299]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 15718299]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 23788678]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15049817]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 15242642]; GO_p…
codon start: 1
product: ATP-dependent RNA helicase HAS1
translation: MSRKEKSVAVKSKKPRSSLSNGKSSSVKKTKAVEHSKKVASLKKSRKQKEESPEESDIENDEDEVEDAEVEELDQEFDEVEGLLDVEAEENEDDEEEENEDDEEENDDDEEEEEDEEKENGDENEFEDENGNITAPSKSAIVASSGSASGPDPTLFSELKLSENTAKAITEMGFKKMTSVQARAIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLYSLKFKPRNGTGVIIISPTRELALQIFGVARELMAHHTQTLGIVIGGANRRAEAEKLVKGVNLIVATPGRLLDHLQNTKGFVFKNLKALVIDEADRILEIGFEDEMKQIIKILPQRDDRQSMLFSATQTTKVEDLARISLRPGPLYINVDSEKETSTADGLEQGYVVCDSDKRFLLLFSFLRRNKNKKVIVFLSSCNCVKFYGELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSELGFLRYLKAAKVPLNEYEFPASKIANVQGQLEKLVSSNYWLNQSAKDGYRAYLQAYSSHHLKTVYQIDKLDLVKVAKSFGFNIPPKVNITIGASGRAPKKNNGQNDYKKRKFNNSSRR
SIO_010081: AWJ20_4897
subclass of: SO_0000673
so part of: AWJ20_4897
location: complement(871443..873332)
location: region:871443-873332:-1
so has part: feature:871443-873332:-1:exon

XP_018736422.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:871443-873332:-1:exon

AWJ20_4898
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SUV3
locus tag: AWJ20_4898
so part of: sequence
location: <875646..>877121
location: region:875646-877121:1
so has part: feature:875646-877121:1:exon
subclass of: SO_0000010

30037079
type: Gene
SIO_000068: ncbigene

position:875646:1
position: 875646
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:877121:1
position: 877121
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:875646-877121:1:exon

AWJ20_4898
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SUV3
locus tag: AWJ20_4898
product: Suv3p
transcript id: XM_018882000.1
SIO_010081: AWJ20_4898
subclass of: SO_0000673
so part of: AWJ20_4898
location: <875646..>877121
location: region:875646-877121:1
so has part: feature:875646-877121:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:875646-877121:1:exon

AWJ20_4898
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SUV3
locus tag: AWJ20_4898
inference: similar to AA sequence:KEGG_Orthology:K17675
note: ATP-dependent RNA helicase; component of the mitochondrial degradosome along with the RNase Dss1p; the degradosome associates with the ribosome and mediates RNA turnover; also required during splicing of the COX1 AI5_beta intron; GO_component: GO:0000262 - mitochondrial chromosome [Evidence IDA] [PMID 21911497]; GO_component: GO:0045025 - mitochondrial degradosome [Evidence IDA] [PMID 12426313]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA] [PMID 12426313]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA] [PMID 17658549]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008859 - exoribonuclease II activity [Evidence IDA] [PMID 17658549]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016817 - hydrolase activity, acting on acid anhydrides [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0000372 - Group I intron splicing [Evidence IGI] [PMID 20064926]; GO_process: GO:0006264 - mitochondrial DNA replication [Evidence IMP] [PMID 21911497]; GO_process: GO:0000957 - mitochondrial RNA catabolic process [Evidence IMP] [PMID 12426313]
codon start: 1
product: Suv3p
translation: MKSARIPCNLVTGEEVIEEFDETGRPAGLCSGTVEMMDINRQMDVAVLDEIQMIDDAERGWAWTQAFLAVQAREIHLCGDPNTEELVRKLAAQAGDELEVVNYTRLSPLEIEKRELGDDLQKLQPGDCLVFFSKRHILAAKNIIEAETGDKCAVIYGSLPAETRSKQAELFNDPDSDVKYLVASDAIGMGLNLAVRRIIFSRVRKFNGHELIKLPIAQVKQIAGRAGRFQTAPSKDSRDTRSTGNVGYVTSLHAHDREYIEQCLALPSPPVKQAAFFPSDTIIQEFAHFIGPQSPYHQMLARLEASIKLPPLYKFVDLSNMITTSKIFANIRGLLLEEMMTLAKAPVSSTDERVKSAFYSFCLVIANGQSKTITEIPNTGVGYLGMSVIPNARPSDTFESIHRVLSLYLWLSYRFPTHFLDRTGAMQLKELCETKINDLLKKSPSISRIVGRKKAKSFKATALHDDSEPLNHLQPPSPRRPRAPTRRYSSF
SIO_010081: AWJ20_4898
subclass of: SO_0000673
so part of: AWJ20_4898
location: 875646..877121
location: region:875646-877121:1
so has part: feature:875646-877121:1:exon

XP_018736423.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:875646-877121:1:exon

AWJ20_4899
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ARP2
locus tag: AWJ20_4899
so part of: sequence
location: <877948..>878958
location: region:877948-878958:1
so has part: feature:877948-878958:1:exon
subclass of: SO_0000010

30037080
type: Gene
SIO_000068: ncbigene

position:877948:1
position: 877948
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:878958:1
position: 878958
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:877948-878958:1:exon

AWJ20_4899
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ARP2
locus tag: AWJ20_4899
product: actin-related protein 2
transcript id: XM_018882001.1
SIO_010081: AWJ20_4899
subclass of: SO_0000673
so part of: AWJ20_4899
location: <877948..>878958
location: region:877948-878958:1
so has part: feature:877948-878958:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:877948-878958:1:exon

AWJ20_4899
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ARP2
locus tag: AWJ20_4899
inference: similar to AA sequence:KEGG_Orthology:K17260
note: Essential component of the Arp2/3 complex; Arp2/3 is a highly conserved actin nucleation center required for the motility and integrity of actin patches; involved in endocytosis and membrane growth and polarity; required for efficient Golgi-to-ER trafficking in COPI mutants; GO_component: GO:0005885 - Arp2/3 protein complex [Evidence IEA]; GO_component: GO:0005885 - Arp2/3 protein complex [Evidence IDA] [PMID 10377407]; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11248049]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IDA,IMP] [PMID 15657399]; GO_function: GO:0016887 - ATPase activity [Evidence IMP] [PMID 16862144]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IMP] [PMID 16862144]; GO_process: GO:0034314 - Arp2/3 complex-mediated actin nucleation [Evidence IEA]; GO_process: GO:0034314 - Arp2/3 complex-mediated actin nucleation [Evidence IMP] [PMID 16862144]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 18287533]; GO_process: GO:0007015 - actin filament organization [Evidence IMP] [PMID 10377407]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IMP] [PMID 17118118]; GO_process: GO:0051654 - establishment of mitochondrion localization [Evidence IMP] [PMID 16107558]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence IMP,IPI] [PMID 11248049]; GO_process: GO:0030833 - regulation of actin filament polymerization [Evidence IEA]
codon start: 1
product: actin-related protein 2
translation: MCGDEASAVRSALQVSYPMENGIIRNWEDMGHLWDYSFYERMKIDPRGRKILLTEPPLNPVANREKMVGTMFEKYGFNGVYVAIQAVLALYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLTRRLDIAGRDITRNLINLLLRRGYAFNRTADFETVRQIKEKFCYVSYDLEYDDRLANETTALMETYELPDGRTIKLGPERFQAPECLFQPHLVDSEQPGVAEFLFNTIQAADVDIRSSLYKAIVLSGGSSMYPGLPSRLEKELKQLWLTRVLNGDPERLSKFKVRIEDPPRRRHMVFLGGAVLANIMHDKEHMWISKAEWEEHGANILSKLGPR
SIO_010081: AWJ20_4899
subclass of: SO_0000673
so part of: AWJ20_4899
location: 877948..878958
location: region:877948-878958:1
so has part: feature:877948-878958:1:exon

XP_018736424.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:877948-878958:1:exon

AWJ20_4900
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4900
so part of: sequence
location: complement(<879174..>880973)
location: region:879174-880973:-1
so has part: feature:879174-880973:-1:exon
subclass of: SO_0000010

30037083
type: Gene
SIO_000068: ncbigene

position:879174:-1
position: 879174
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:880973:-1
position: 880973
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:879174-880973:-1:exon

AWJ20_4900
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4900
product: hypothetical protein
transcript id: XM_018882004.1
SIO_010081: AWJ20_4900
subclass of: SO_0000673
so part of: AWJ20_4900
location: complement(<879174..>880973)
location: region:879174-880973:-1
so has part: feature:879174-880973:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:879174-880973:-1:exon

AWJ20_4900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4900
codon start: 1
product: hypothetical protein
translation: MKDLITDFTSGVRLIQLLEIIGNEPLGRYNPNPRLNVQKAENINTALAFIKHRGILLHNIGAGDIIEGNLKLILGLLWILILRFTISEINEEGLSAKEGLLLWCQRKTAGYPGVNIKDFSSSWTDGLAFCALMDRHRPDLIDFDELDKSNHKKNVSLAFKLAAEEVGIPQLLDVEDICDVKSPDERSVMTYVAYWFHAFSALDKIETAGRRLEKFVDVTSSALTMQHNFEKRMKVLIQSIKKTQESWAKSEFSGTYSDAKLQSSRFSEYKKTTKREWITEKSELASLLGNIRTKLATYGLREYVPPEGLRLQDLEQIWRELISAEATRSRAINNTMRQIKEKLRKNFADTANELSLSLDTVSLKISDLEGELEKQLEGITILSDQLKPLDRMLADLKKLDDQCLEANVEENDYTVYSLNELEYELGLAKQSVVKKLAFIENQIVARSMTNLTPIQLEEFESVFRFFDKGQRNSLQESEFSGALASLGLVYSEEEMHQVFVVASGGNSRVSFEEFIKFMVEVTEDQQTAEQVYQSFFDIANGKPYVTELDLQNSLIPDSMIDELKNSMPLAKGANESEEEGVSLDYVTYMSQLTGVNGHK
SIO_010081: AWJ20_4900
subclass of: SO_0000673
so part of: AWJ20_4900
location: complement(879174..880973)
location: region:879174-880973:-1
so has part: feature:879174-880973:-1:exon

XP_018736425.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:879174-880973:-1:exon

AWJ20_4901
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4901
so part of: sequence
location: complement(<882712..>882801)
location: region:882712-882801:-1
so has part: feature:882712-882801:-1:exon
subclass of: SO_0000663

30037084
type: Gene
SIO_000068: ncbigene

position:882712:-1
position: 882712
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:882801:-1
position: 882801
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:882712-882801:-1:exon

AWJ20_4901
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_4901
product: tRNA-Phe
SIO_010081: AWJ20_4901
subclass of: SO_0000673
so part of: AWJ20_4901
location: complement(<882712..>882801)
location: region:882712-882801:-1
so has part: feature:882712-882801:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:882712-882801:-1:exon

AWJ20_4902
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: hus1
locus tag: AWJ20_4902
so part of: sequence
location: <884710..>885375
location: region:884710-885375:1
so has part: feature:884710-885375:1:exon
subclass of: SO_0000010

30037085
type: Gene
SIO_000068: ncbigene

position:884710:1
position: 884710
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:885375:1
position: 885375
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:884710-885375:1:exon

AWJ20_4902
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: hus1
locus tag: AWJ20_4902
product: checkpoint clamp complex protein Hus1
transcript id: XM_018882005.1
SIO_010081: AWJ20_4902
subclass of: SO_0000673
so part of: AWJ20_4902
location: <884710..>885375
location: region:884710-885375:1
so has part: feature:884710-885375:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:884710-885375:1:exon

AWJ20_4902
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: hus1
locus tag: AWJ20_4902
inference: similar to AA sequence:KEGG_Orthology:K10903
codon start: 1
product: checkpoint clamp complex protein Hus1
translation: MYRAIRSFDTGGRGIGSISLKLRRQNKTPLLRVSFEQSMGIGDSTYVQHEFPVRLVRVDERKAIEEPQCPPPDLYLELPNALSEINRVIDKFKALGTHVRIRVNKLGHISFEVHGDGLRVESTFKYGKVVLAVDDENNTTQPPELEQDPYSNEPANDPSVTVMLKDLSNVLRITTVVKRIVVGVCNEYALILYCYLDRDPDKHDDSGDEEVLTYYMSHFDV
SIO_010081: AWJ20_4902
subclass of: SO_0000673
so part of: AWJ20_4902
location: 884710..885375
location: region:884710-885375:1
so has part: feature:884710-885375:1:exon

XP_018736426.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:884710-885375:1:exon

AWJ20_4903
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SER1
locus tag: AWJ20_4903
so part of: sequence
location: complement(<885684..>886841)
location: region:885684-886841:-1
so has part: feature:885684-886841:-1:exon
subclass of: SO_0000010

30037086
type: Gene
SIO_000068: ncbigene

position:885684:-1
position: 885684
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:886841:-1
position: 886841
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:885684-886841:-1:exon

AWJ20_4903
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SER1
locus tag: AWJ20_4903
product: O-phospho-L-serine:2-oxoglutarate transaminase
transcript id: XM_018882006.1
SIO_010081: AWJ20_4903
subclass of: SO_0000673
so part of: AWJ20_4903
location: complement(<885684..>886841)
location: region:885684-886841:-1
so has part: feature:885684-886841:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:885684-886841:-1:exon

AWJ20_4903
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SER1
locus tag: AWJ20_4903
inference: similar to AA sequence:KEGG_Orthology:K00831
note: 3-phosphoserine aminotransferase; catalyzes the formation of phosphoserine from 3-phosphohydroxypyruvate, required for serine and glycine biosynthesis; regulated by the general control of amino acid biosynthesis mediated by Gcn4p; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004648 - O-phospho-L-serine:2-oxoglutarate aminotransferase activity [Evidence IEA,IEA]; GO_function: GO:0004648 - O-phospho-L-serine:2-oxoglutarate aminotransferase activity [Evidence IMP,ISS] [PMID 8017107]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006564 - L-serine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006564 - L-serine biosynthetic process [Evidence IMP,ISS] [PMID 8017107]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009113 - purine nucleobase biosynthetic process [Evidence IMP] [PMID 10509016]; GO_process: GO:0009070 - serine family amino acid biosynthetic process [Evidence IMP] [PMID 1326413]
codon start: 1
product: O-phospho-L-serine:2-oxoglutarate transaminase
translation: MVLNKLDRAPPHYFGAGPALLPTEVLQQAAVELIQYQNLGIGLGEMSHRSSQAIDIINTTKQKVTQLLDVPDTHEVFFAQGGGTGGFAAVAGNLLAAHAHKTGKKGVANYIVTGSWSQKAAEEAERLGADVNIVVDARKFTPNGKYGVIPAQSDWKFTPNAEDIAYVYYCDNETVGGVEFHAPPEVPEGVELVADMSSNFLSKPVDVSKFGLIFGGAQKNIGIAGISLYIIKKSLLQHASLEQLRQLQVPIIPIFLDFPTLVKNNSAYNTLSIFALRIVQLNVEHLLAKGGLKAQGEESKRKAAKIYALLDKHPEIYKSPVAPTARSNMNIVFTIPGDGKEETFIKEAAIWGLTGLKGHRSVGGIRVSNCKSTGDVLPPAAGAPP
SIO_010081: AWJ20_4903
subclass of: SO_0000673
so part of: AWJ20_4903
location: complement(885684..886841)
location: region:885684-886841:-1
so has part: feature:885684-886841:-1:exon

XP_018736427.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:885684-886841:-1:exon

AWJ20_4904
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4904
so part of: sequence
location: <888611..>889315
location: region:888611-889315:1
so has part: feature:888611-889315:1:exon
subclass of: SO_0000010

30037087
type: Gene
SIO_000068: ncbigene

position:888611:1
position: 888611
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:889315:1
position: 889315
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:888611-889315:1:exon

AWJ20_4904
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4904
product: hypothetical protein
transcript id: XM_018882007.1
SIO_010081: AWJ20_4904
subclass of: SO_0000673
so part of: AWJ20_4904
location: <888611..>889315
location: region:888611-889315:1
so has part: feature:888611-889315:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:888611-889315:1:exon

AWJ20_4904
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4904
inference: similar to AA sequence:KEGG_Orthology:K13119
codon start: 1
product: hypothetical protein
translation: MESNGGLVSLKELRRRKEEAKRLAAGGVNVPTEEIKPAEEATNSQDRSTSSPAASTDSGERKRELTSDNSTITTTKSRFKKRKQVFSKLSFANDEDEEDDNERDNGPSRPVSKLKRDPTIDTSNLKTKKQILKDRELLNKEKNSEAQKHAIIREQVVNFPFVYYDGSETASFVEIKKGDPVWMILEKTRKGFKKFHRGTVDDIMLVKHNVIIPHVSPPPLLLHHTSIYSLNLFY
SIO_010081: AWJ20_4904
subclass of: SO_0000673
so part of: AWJ20_4904
location: 888611..889315
location: region:888611-889315:1
so has part: feature:888611-889315:1:exon

XP_018736428.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:888611-889315:1:exon

AWJ20_4905
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: BUD23
locus tag: AWJ20_4905
so part of: sequence
location: complement(<889958..>890764)
location: region:889958-890764:-1
so has part: feature:889958-890764:-1:exon
subclass of: SO_0000010

30037088
type: Gene
SIO_000068: ncbigene

position:889958:-1
position: 889958
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:890764:-1
position: 890764
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:889958-890764:-1:exon

AWJ20_4905
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: BUD23
locus tag: AWJ20_4905
product: Bud23p
transcript id: XM_018882008.1
SIO_010081: AWJ20_4905
subclass of: SO_0000673
so part of: AWJ20_4905
location: complement(<889958..>890764)
location: region:889958-890764:-1
so has part: feature:889958-890764:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:889958-890764:-1:exon

AWJ20_4905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: BUD23
locus tag: AWJ20_4905
inference: similar to AA sequence:KEGG_Orthology:K19306
note: Methyltransferase; methylates residue G1575 of 18S rRNA; required for rRNA processing and nuclear export of 40S ribosomal subunits independently of methylation activity; diploid mutant displays random budding pattern; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 18332120]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence ISS] [PMID 9873020]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016435 - rRNA (guanine) methyltransferase activity [Evidence IMP] [PMID 18332120]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0000282 - cellular bud site selection [Evidence IMP] [PMID 11452010]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 18332120]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0070476 - rRNA (guanine-N7)-methylation [Evidence IMP] [PMID 18332120]; GO_process: GO:0000056 - ribosomal small subunit export from nucleus [Evidence IMP] [PMID 18332120]
codon start: 1
product: Bud23p
translation: MSRPEYTAPPEVFYNDDESKKYTTSTRVQHIQAEMTLRALELLNVPPSQHILDIGCGSGLSGEILSEEGHSWIGMDISTSMIANAVDREVEGDLFLADMGSGIPFRAGSFDAAISISAIQWLCNADTSTANPKKRLMTFFQTLYASLKRGGKVVCQFYPSNDKQTDAILNAAKMTGFAGGLVVDDAESKKNKKYYLVLAAGQTDADQEINLDGVKMDASAMVTSKKRRNKKDESRKDYIMRKKELMRKRGKTIAKDSKFTARKRGPKF
SIO_010081: AWJ20_4905
subclass of: SO_0000673
so part of: AWJ20_4905
location: complement(889958..890764)
location: region:889958-890764:-1
so has part: feature:889958-890764:-1:exon

XP_018736429.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:889958-890764:-1:exon

AWJ20_4906
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: VMA4
locus tag: AWJ20_4906
so part of: sequence
location: complement(<892332..>893027)
location: region:892332-893027:-1
so has part: feature:892332-893027:-1:exon
subclass of: SO_0000010

30037089
type: Gene
SIO_000068: ncbigene

position:892332:-1
position: 892332
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:893027:-1
position: 893027
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:892332-893027:-1:exon

AWJ20_4906
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: VMA4
locus tag: AWJ20_4906
product: H(+)-transporting V1 sector ATPase subunit E
transcript id: XM_018882009.1
SIO_010081: AWJ20_4906
subclass of: SO_0000673
so part of: AWJ20_4906
location: complement(<892332..>893027)
location: region:892332-893027:-1
so has part: feature:892332-893027:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:892332-893027:-1:exon

AWJ20_4906
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: VMA4
locus tag: AWJ20_4906
inference: similar to AA sequence:KEGG_Orthology:K02150
note: Subunit E of the V1 domain of the vacuolar H+-ATPase (V-ATPase); V-ATPase is an electrogenic proton pump found throughout the endomembrane system; V1 domain has eight subunits; required for the V1 domain to assemble onto the vacuolar membrane; protein abundance increases in response to DNA replication stress; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence TAS] [PMID 11717306]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 23708375]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0033178 - proton-transporting two-sector ATPase complex, catalytic domain [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0000221 - vacuolar proton-transporting V-type ATPase, V1 domain [Evidence IDA] [PMID 16774922]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence IEA]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence TAS] [PMID 10224039]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence TAS] [PMID 9442887]; GO_process: GO:0015991 - ATP hydrolysis coupled proton transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007035 - vacuolar acidification [Evidence TAS] [PMID 10224039]; GO_process: GO:0007035 - vacuolar acidification [Evidence TAS] [PMID 9442887]
codon start: 1
product: H(+)-transporting V1 sector ATPase subunit E
translation: MPANQALSDDQVAGELQKMVEFIKKEADEKAKEIELKANEEYEIDKATVVRSETASIDHLYERKYKQSELSQQIAKSTIANQIRLKVLRAKEDALSEILEEAAQKLKTVANDKAKYETVLDGLIQEGLFALMDDKISLRVREADVGLVEKAIPSAIKAFEEKTSHTGTQVSIDKDNFLPKDSAGGVIIVNSTGKIDVDNTLEERLKLLSETSLPQIRLALFGASASRKHFD
SIO_010081: AWJ20_4906
subclass of: SO_0000673
so part of: AWJ20_4906
location: complement(892332..893027)
location: region:892332-893027:-1
so has part: feature:892332-893027:-1:exon

XP_018736430.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:892332-893027:-1:exon

AWJ20_4907
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4907
so part of: sequence
location: <894757..>895827
location: region:894757-895827:1
so has part: feature:894757-895827:1:exon
subclass of: SO_0000010

30037090
type: Gene
SIO_000068: ncbigene

position:894757:1
position: 894757
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:895827:1
position: 895827
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:894757-895827:1:exon

AWJ20_4907
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4907
product: hypothetical protein
transcript id: XM_018882010.1
SIO_010081: AWJ20_4907
subclass of: SO_0000673
so part of: AWJ20_4907
location: <894757..>895827
location: region:894757-895827:1
so has part: feature:894757-895827:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:894757-895827:1:exon

AWJ20_4907
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4907
inference: similar to AA sequence:KEGG_Orthology:K14715
codon start: 1
product: hypothetical protein
translation: MITSLGIGILVGTSLIVIIPEGADAMYSIGLAQGTGSAVDAFGGDKGMTGDGTEMDSGAGGGGGGGLDSRKSIGLALIAGYLLMYLIDKLPSSWDGLWSLIRHRRGGRNRFNMGIDMSSLRFTSLGSGGGTGGVGGGVGGGRSSDSIERGLGSGGSGGSGGSGGHGLSGGGLGGGSGGGVGGGGGEVKSTSTAIGLIIHAIADGVALGASVSTESSALETIIFLAIMIHKAPASFGLTTVLIGSGVDLDKVKRDLIAFAAAAPVGAILTYFLISILGSNDSELIQWWTGVLLVFSGGTFLYVAVHAMSELHDVNSPINSLEYSSSSSPTPIEPSMDLLLSSVGMLVPLVTFFVPDV
SIO_010081: AWJ20_4907
subclass of: SO_0000673
so part of: AWJ20_4907
location: 894757..895827
location: region:894757-895827:1
so has part: feature:894757-895827:1:exon

XP_018736431.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:894757-895827:1:exon

AWJ20_4908
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CSR1
locus tag: AWJ20_4908
so part of: sequence
location: <899325..>900770
location: region:899325-900770:1
so has part: feature:899325-900770:1:exon
subclass of: SO_0000010

30037091
type: Gene
SIO_000068: ncbigene

position:899325:1
position: 899325
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:900770:1
position: 900770
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:899325-900770:1:exon

AWJ20_4908
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CSR1
locus tag: AWJ20_4908
product: Csr1p
transcript id: XM_018882011.1
SIO_010081: AWJ20_4908
subclass of: SO_0000673
so part of: AWJ20_4908
location: <899325..>900770
location: region:899325-900770:1
so has part: feature:899325-900770:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:899325-900770:1:exon

AWJ20_4908
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CSR1
locus tag: AWJ20_4908
note: Phosphatidylinositol transfer protein; has a potential role in regulating lipid and fatty acid metabolism under heme-depleted conditions; interacts specifically with thioredoxin peroxidase; may have a role in oxidative stress resistance; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12869188]; GO_component: GO:0005768 - endosome [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 10848624]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 12869188]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 17803462]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0008525 - phosphatidylcholine transporter activity [Evidence IDA] [PMID 10848624]; GO_function: GO:0008526 - phosphatidylinositol transporter activity [Evidence IDA] [PMID 10848624]; GO_process: GO:0043001 - Golgi to plasma membrane protein transport [Evidence IGI] [PMID 10848624]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IGI] [PMID 16126894]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0045717 - negative regulation of fatty acid biosynthetic process [Evidence IDA,IGI,IMP] [PMID 17803462]; GO_process: GO:1901352 - negative regulation of phosphatidylglycerol biosynthetic process [Evidence IGI] [PMID 12869188]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IGI] [PMID 16262726]; GO_process: GO:0009395 - phospholipid catabolic process [Evidence IEA]; GO_process: GO:0015914 - phospholipid transport [Evidence IDA] [PMID 10848624]; GO_process: GO…
codon start: 1
product: Csr1p
translation: MTPTTSYPELNMTSSNVVRTFTASSRMSHISFGSSNSDLTPSNRSILSESSDSTPLPEDYVIKVKQMYAHILVYTGDAPKSTIPGLMASTTKNFDHRAQNVLKSHLYKISPDKFKTTYRNVVRAENFDIILLRYLKKRKFNVLKALALFADFMVWRVKFAIDELNERGDEGALASGDEGFILQYKLGKAVFNQGRDKAGRPLVIVRVQRHNPKAQSDAAMNRFIAKVFEDAKLLLLGYNESGAAIFDLTDFTISNMDYSAVKMINSCYKFYVGLLGHVYIYNAPSIFLTIWKAIKVWLDPSLVARVTFTKNLSKHITADNLPPDMEGTQPHIYEYKQVVPGENRKMKDLETIDRLQTTRGELFDLLSDLTVLWIKAPENTQLTHNLAKQRALVLDDLRRNYYQLDPYIRGRTVYDRDGTFGAIVPELTEGYAESEAAGIVLSQSASSIVTAVNNPPPDSSPRASHSPKHMHTKVSLVPLIV
SIO_010081: AWJ20_4908
subclass of: SO_0000673
so part of: AWJ20_4908
location: 899325..900770
location: region:899325-900770:1
so has part: feature:899325-900770:1:exon

XP_018736432.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:899325-900770:1:exon

AWJ20_4909
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: APL5
locus tag: AWJ20_4909
so part of: sequence
location: <903030..>905768
location: region:903030-905768:1
so has part: feature:903030-905768:1:exon
subclass of: SO_0000010

30037092
type: Gene
SIO_000068: ncbigene

position:903030:1
position: 903030
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:905768:1
position: 905768
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:903030-905768:1:exon

AWJ20_4909
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: APL5
locus tag: AWJ20_4909
product: Apl5p
transcript id: XM_018882012.1
SIO_010081: AWJ20_4909
subclass of: SO_0000673
so part of: AWJ20_4909
location: <903030..>905768
location: region:903030-905768:1
so has part: feature:903030-905768:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:903030-905768:1:exon

AWJ20_4909
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: APL5
locus tag: AWJ20_4909
inference: similar to AA sequence:KEGG_Orthology:K12396
note: Delta adaptin-like subunit of the clathrin associated protein complex; functions in transport of alkaline phosphatase to the vacuole via the alternate pathway; suppressor of loss of casein kinase 1 function; the clathrin associated protein complex is also known as AP-3; GO_component: GO:0030123 - AP-3 adaptor complex [Evidence IMP] [PMID 9250663]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA,IEA]; GO_component: GO:0030665 - clathrin-coated vesicle membrane [Evidence IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030117 - membrane coat [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 10559961]; GO_function: GO:0008565 - protein transporter activity [Evidence IEA]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IMP] [PMID 9335339]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 17895371]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]
codon start: 1
product: Apl5p
translation: MAIMKLTYLEMYGNDMSWASFHVLEVMSSAKFQQKRVGYLAAAQSFRANTDVLMLTTNLLKKDLGSANPLEVSTSLSAAASIVTPSLAHDLSPDILKMLNHSRPYIRKKAVLAMYKVFLQYPEALPGAFPRLKDKLEDADPSVVSATVNVICELAKQTSGTGSEITKTYLSLAPQLYELLTTSKNNWMLIKILKLFSALAPTEPRLKPKLLPPIIQLMRTTTAMSLLYECINCIVSGDMLDEDDYEVAELCVSKLRTFLEEHDQNLKYVGLLALGKIVVKHPQFVINLQDVILECADDKDLTIRDCVLDLIPGIVTENNIYHIVNKLMDQLRASRGILSPGSAGVAAGAGGTSAEDNKNNSALDNHNSRIIESIISVCSKDTYSLVPDFEWYTTILVELVQLGTDNVGWRIGDQLRNIAIRVKSMRGVIVEASVRLLMNYQLMTHMPSVVKFVVWIVGEYASLVPNVHELLTQLITSRYGDEEAELGYMANSGISGTFGMFTTFGSAVSGGAGGNTSSSHGNGRHGPGSNSPSNAQFGTVEASIQAVVKLYSNWAGQANWPSGFHFQVLEATNQLITYLEHYSTAISYEVQERAVGFLELVKVAKEAIEQLPDNSETPPLLLTLAIPSMFNGYELNPVAQNSQRKIPLPEDLDLDTEIYPAYALSDIEDDYEIEDEASTLVDGTTILIEDTPLTEQDLERKRLERLERQRDDPFYIPISSGNQTPLENSRSNTPTPGIAIANAGGSGSQPSSYTPGSHISSASQPSKFMPPPRRTKVEIIQDEKIDGVDDVDETTTTTVKTKSKTSKSRSKPLFKIESRLTKLDLNPETSTTTDQAATLEVQKLRQQLLNESSSKPAASSDEILVTHKKIKKKKPKSTTGEAGEATPKKKKKKKVTSSEPPAAAEPAPETMY
SIO_010081: AWJ20_4909
subclass of: SO_0000673
so part of: AWJ20_4909
location: 903030..905768
location: region:903030-905768:1
so has part: feature:903030-905768:1:exon

XP_018736433.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:903030-905768:1:exon

AWJ20_4910
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RAD52
locus tag: AWJ20_4910
so part of: sequence
location: <906218..>907750
location: region:906218-907750:1
so has part: feature:906218-907750:1:exon
subclass of: SO_0000010

30037094
type: Gene
SIO_000068: ncbigene

position:906218:1
position: 906218
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:907750:1
position: 907750
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:906218-907750:1:exon

AWJ20_4910
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RAD52
locus tag: AWJ20_4910
product: recombinase RAD52
transcript id: XM_018882014.1
SIO_010081: AWJ20_4910
subclass of: SO_0000673
so part of: AWJ20_4910
location: <906218..>907750
location: region:906218-907750:1
so has part: feature:906218-907750:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:906218-907750:1:exon

AWJ20_4910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RAD52
locus tag: AWJ20_4910
inference: similar to AA sequence:KEGG_Orthology:K10873
note: Protein that stimulates strand exchange; stimulates strand exchange by facilitating Rad51p binding to single-stranded DNA; anneals complementary single-stranded DNA; involved in the repair of double-strand breaks in DNA during vegetative growth and meiosis and UV induced sister chromatid recombination; GO_component: GO:0000228 - nuclear chromosome [Evidence IDA] [PMID 12766777]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11459964]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0000150 - recombinase activity [Evidence IDA] [PMID 15205482]; GO_process: GO:0006277 - DNA amplification [Evidence IMP] [PMID 23271978]; GO_process: GO:0000730 - DNA recombinase assembly [Evidence IDA] [PMID 11459983]; GO_process: GO:0006310 - DNA recombination [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0000733 - DNA strand renaturation [Evidence IDA] [PMID 9619627]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0000727 - double-strand break repair via break-induced replication [Evidence IMP] [PMID 17096599]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IMP] [PMID 17096599]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IMP] [PMID 24190138]; GO_process: GO:0045002 - double-strand break repair via single-strand annealing [Evidence IGI] [PMID 11606529]; GO_process: GO:0000709 - meiotic joint molecule formation [Evidence IGI,IMP] [PMID 18313389]; GO_process: GO:0006301 - postreplication repair [Evidence IMP] [PMID 7038396]; GO_process: GO:0000722 - telomere maintenance via recombination [Evidence IMP] [PMID 11238918]
codon start: 1
product: recombinase RAD52
translation: MPNYGDQHLSNGSRYGTNGGGGYLPNNNRSWSNGNASGSGTGSSGNGGAAVNGTNFTIKESNHIRQQLGKQLGPEYISHRPGGGGLKVPYLEGWKVINLANEVFGFNGWSSEIINHEIDYCDEIRDGRFNLGMSAKIRVTLRDGTYREDVGYGQVENARSKGMAFDKCKKEATTDGLKRALRLFGNALGNCLYDSSYTRNISRVKVSMPPFDESQLIRRPEIVTMQKAAAAAKAAREAAEAAELEELAALNTSTKPSIKSEASTVAASSTPQNGLAAKGTNLTAVGTGNNGATSRIANNSGSGQPSLPSLPTKAFAKPDGSGVDSSSTAVSGSLDFMPAGFLDSDDMFDDHEFAEIDGLPYIAPREEPVPAPARVPLNIKADTSIDTTANITANTTADLTSNTTANTTANITNESGTTTNKPNKESEDHTASPVQFFSARAALAVQKDMIPENSQFDPSFQSPSLRRTVPNKSVPIKKSSVNPLSQDPQPPTLASDRTPEPDSRKRMRLD
SIO_010081: AWJ20_4910
subclass of: SO_0000673
so part of: AWJ20_4910
location: 906218..907750
location: region:906218-907750:1
so has part: feature:906218-907750:1:exon

XP_018736434.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:906218-907750:1:exon

AWJ20_4911
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: GCD7
locus tag: AWJ20_4911
so part of: sequence
location: complement(<907976..>908749)
location: region:907976-908749:-1
so has part: feature:907976-908749:-1:exon
subclass of: SO_0000010

30037095
type: Gene
SIO_000068: ncbigene

position:907976:-1
position: 907976
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:908749:-1
position: 908749
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:907976-908749:-1:exon

AWJ20_4911
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: GCD7
locus tag: AWJ20_4911
product: translation initiation factor eIF2B subunit beta
transcript id: XM_018882015.1
SIO_010081: AWJ20_4911
subclass of: SO_0000673
so part of: AWJ20_4911
location: complement(<907976..>908749)
location: region:907976-908749:-1
so has part: feature:907976-908749:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:907976-908749:-1:exon

AWJ20_4911
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: GCD7
locus tag: AWJ20_4911
inference: similar to AA sequence:KEGG_Orthology:K03754
note: Beta subunit of the translation initiation factor eIF2B; the guanine-nucleotide exchange factor for eIF2; activity subsequently regulated by phosphorylated eIF2; first identified as a negative regulator of GCN4 expression; GO_component: GO:0005851 - eukaryotic translation initiation factor 2B complex [Evidence IDA,IGI,IPI] [PMID 8336705]; GO_component: GO:0005851 - eukaryotic translation initiation factor 2B complex [Evidence IMP] [PMID 8441423]; GO_component: GO:0005851 - eukaryotic translation initiation factor 2B complex [Evidence IDA,IPI] [PMID 8506384]; GO_component: GO:0032045 - guanyl-nucleotide exchange factor complex [Evidence IPI] [PMID 8336705]; GO_component: GO:0032045 - guanyl-nucleotide exchange factor complex [Evidence IDA] [PMID 8506384]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IGI] [PMID 8164676]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IGI,IPI] [PMID 8887689]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IMP] [PMID 9032257]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IPI] [PMID 8336705]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IDA] [PMID 8506384]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IGI,IPI] [PMID 8336705]; GO_process: GO:0044237 - cellular metabolic process [Evidence IEA]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IGI] [PMID 8164676]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IDA] [PMID 8506384]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IGI,IPI] [PMID 8887689]; GO_process: GO:0006446 - regula…
codon start: 1
product: translation initiation factor eIF2B subunit beta
translation: MFGLLSVDPSATSNSPTKALTNEEARKAHRDTKADIIEGIQELIEEISNIDDSIAGMSVDMIHENEVLLTASPNSKTVLEFLLRASQKRTFTVLVTEGFPNEVTASHEFALTLSKAGIHTVIIPDTATSAVMSRVGKVIIGTRAVLANGGCVSSSGVALVCEAAKDYRVPVLAVTGLYKLSPLYPFDIDQLIEVGDTGKVIGFNDTGLMDKIGVMNPVYDYVAPEHIDIYVTNIGGFSPSFTYRIILDHYSNQDVSL
SIO_010081: AWJ20_4911
subclass of: SO_0000673
so part of: AWJ20_4911
location: complement(907976..908749)
location: region:907976-908749:-1
so has part: feature:907976-908749:-1:exon

XP_018736435.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:907976-908749:-1:exon

AWJ20_4912
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4912
so part of: sequence
location: <909623..>910453
location: region:909623-910453:1
so has part: feature:909623-910453:1:exon
subclass of: SO_0000010

30037096
type: Gene
SIO_000068: ncbigene

position:909623:1
position: 909623
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:910453:1
position: 910453
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:909623-910453:1:exon

AWJ20_4912
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4912
product: hypothetical protein
transcript id: XM_018882016.1
SIO_010081: AWJ20_4912
subclass of: SO_0000673
so part of: AWJ20_4912
location: <909623..>910453
location: region:909623-910453:1
so has part: feature:909623-910453:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:909623-910453:1:exon

AWJ20_4912
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4912
codon start: 1
product: hypothetical protein
translation: MTYFFVKAIPGVQDFGVHVASLASLTVADLISQINSRLPPAVAKSTYVSMQNGSIISQNRNQKLSEVFPDDPEYLLLRLNGCLCGGKGGFGSMLRDMGKKKRKKGPRREEEMDSFKTLDGRSMKSIRQAKELLAHLDKLPEMEKQKIEKKRAKLLSIIDSANRATNSASSSKFSDTDYLETCEKLVSDVRQAVMNHSEESLSDSASVSSETSKSSKSSVTDSEISSKSTSLKGKEKTTQKTPNIQITSSEEVVVATSRPKAMNFFEDEDYDEDDDE
SIO_010081: AWJ20_4912
subclass of: SO_0000673
so part of: AWJ20_4912
location: 909623..910453
location: region:909623-910453:1
so has part: feature:909623-910453:1:exon

XP_018736436.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:909623-910453:1:exon

AWJ20_4913
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: JEN1
locus tag: AWJ20_4913
so part of: sequence
location: <911509..>912012
location: region:911509-912012:1
so has part: feature:911509-912012:1:exon
subclass of: SO_0000010

30037097
type: Gene
SIO_000068: ncbigene

position:911509:1
position: 911509
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:912012:1
position: 912012
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:911509-912012:1:exon

AWJ20_4913
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: JEN1
locus tag: AWJ20_4913
product: Jen1p
transcript id: XM_018882017.1
SIO_010081: AWJ20_4913
subclass of: SO_0000673
so part of: AWJ20_4913
location: <911509..>912012
location: region:911509-912012:1
so has part: feature:911509-912012:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:911509-912012:1:exon

AWJ20_4913
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: JEN1
locus tag: AWJ20_4913
inference: similar to AA sequence:KEGG_Orthology:K08178
note: Monocarboxylate/proton symporter of the plasma membrane; transport activity is dependent on the pH gradient across the membrane; mediates high-affinity uptake of carbon sources lactate, pyuvate, and acetate, and also of the micronutrient selenite, whose structure mimics that of monocarboxylates; expression and localization are tightly regulated, with transcription repression, mRNA degradation, and protein endocytosis and degradation all occurring in the presence of glucose; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17710650]; GO_function: GO:0015144 - carbohydrate transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015355 - secondary active monocarboxylate transmembrane transporter activity [Evidence IMP] [PMID 17710650]; GO_function: GO:0097079 - selenite:proton symporter activity [Evidence IMP] [PMID 20861301]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_process: GO:0034219 - carbohydrate transmembrane transport [Evidence IEA]; GO_process: GO:0035879 - plasma membrane lactate transport [Evidence IMP] [PMID 10198029]; GO_process: GO:0035879 - plasma membrane lactate transport [Evidence IMP] [PMID 17710650]; GO_process: GO:0006849 - plasma membrane pyruvate transport [Evidence IMP] [PMID 17710650]; GO_process: GO:0097080 - plasma membrane selenite transport [Evidence IMP] [PMID 20861301]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Jen1p
translation: MSSQSYSPYVEDEKPDLSVGALVRYLASRPSTLFTLPESDTKRLNPIPPLRAMKLRHWNWYMMGFLAWTVDAMDFFVVSASASAIAESLNVTIVKITWGMTLVLMFRSVGAVIFGTISDTWGRKWSYIACCLCFVALEIGMGFITSYKQFLAVRALFGISMGGKSSR
SIO_010081: AWJ20_4913
subclass of: SO_0000673
so part of: AWJ20_4913
location: 911509..912012
location: region:911509-912012:1
so has part: feature:911509-912012:1:exon

XP_018736437.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:911509-912012:1:exon

AWJ20_4914
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: JEN1
locus tag: AWJ20_4914
so part of: sequence
location: <912067..>913065
location: region:912067-913065:1
so has part: feature:912067-913065:1:exon
subclass of: SO_0000010

30037098
type: Gene
SIO_000068: ncbigene

position:912067:1
position: 912067
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:913065:1
position: 913065
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:912067-913065:1:exon

AWJ20_4914
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: JEN1
locus tag: AWJ20_4914
product: Jen1p
transcript id: XM_018882018.1
SIO_010081: AWJ20_4914
subclass of: SO_0000673
so part of: AWJ20_4914
location: <912067..>913065
location: region:912067-913065:1
so has part: feature:912067-913065:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:912067-913065:1:exon

AWJ20_4914
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: JEN1
locus tag: AWJ20_4914
inference: similar to AA sequence:KEGG_Orthology:K08178
note: Monocarboxylate/proton symporter of the plasma membrane; transport activity is dependent on the pH gradient across the membrane; mediates high-affinity uptake of carbon sources lactate, pyuvate, and acetate, and also of the micronutrient selenite, whose structure mimics that of monocarboxylates; expression and localization are tightly regulated, with transcription repression, mRNA degradation, and protein endocytosis and degradation all occurring in the presence of glucose; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17710650]; GO_function: GO:0015144 - carbohydrate transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015355 - secondary active monocarboxylate transmembrane transporter activity [Evidence IMP] [PMID 17710650]; GO_function: GO:0097079 - selenite:proton symporter activity [Evidence IMP] [PMID 20861301]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_process: GO:0034219 - carbohydrate transmembrane transport [Evidence IEA]; GO_process: GO:0035879 - plasma membrane lactate transport [Evidence IMP] [PMID 10198029]; GO_process: GO:0035879 - plasma membrane lactate transport [Evidence IMP] [PMID 17710650]; GO_process: GO:0006849 - plasma membrane pyruvate transport [Evidence IMP] [PMID 17710650]; GO_process: GO:0097080 - plasma membrane selenite transport [Evidence IMP] [PMID 20861301]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Jen1p
translation: MYGTAAATSLENIPPESISMMSGLFLPGYNLGYIFAIIFYRAFQYTHGGEGWRSLCWFTAGPAALLAIWRLCFPEGEYFSKLKEKREFEKLNAVGRWNDAKVAIANYWVVFVYLIFLMSGMNFMSHGTMDLYPTLLVTQAKLGTDAKTVVMVVSNLGAIAGGLIFGQLSEILGRRLCISVCCLLGGAFVYPAFLGANENTLMAGSTLLMAAVFGAWGQITIHLFELSPPRYRTLAAGLAYQLGNLASSASATIEATIGARFPIGDKPGVYNYGLVMCIFSGAVFGYVLIVIFLGPERFHRDLYEQVRTDDEKIYTLDDEKAETHHIDSVGRV
SIO_010081: AWJ20_4914
subclass of: SO_0000673
so part of: AWJ20_4914
location: 912067..913065
location: region:912067-913065:1
so has part: feature:912067-913065:1:exon

XP_018736438.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:912067-913065:1:exon

AWJ20_4915
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4915
so part of: sequence
location: <913920..>914177
location: region:913920-914177:1
so has part: feature:913920-914177:1:exon
subclass of: SO_0000010

30037099
type: Gene
SIO_000068: ncbigene

position:913920:1
position: 913920
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:914177:1
position: 914177
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:913920-914177:1:exon

AWJ20_4915
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4915
product: hypothetical protein
transcript id: XM_018882019.1
SIO_010081: AWJ20_4915
subclass of: SO_0000673
so part of: AWJ20_4915
location: <913920..>914177
location: region:913920-914177:1
so has part: feature:913920-914177:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:913920-914177:1:exon

AWJ20_4915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4915
codon start: 1
product: hypothetical protein
translation: MDQDVMVPWVLQNKVNKKKNQLKEAAAEPETAPEPPKPEEPPVVWNRYYHLYKQGELEEDVVTAKGRVVESGYERDNWWAIISKE
SIO_010081: AWJ20_4915
subclass of: SO_0000673
so part of: AWJ20_4915
location: 913920..914177
location: region:913920-914177:1
so has part: feature:913920-914177:1:exon

XP_018736439.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:913920-914177:1:exon

AWJ20_4916
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PRP8
locus tag: AWJ20_4916
so part of: sequence
location: complement(<914375..>915817)
location: region:914375-915817:-1
so has part: feature:914375-915817:-1:exon
subclass of: SO_0000010

30037100
type: Gene
SIO_000068: ncbigene

position:914375:-1
position: 914375
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:915817:-1
position: 915817
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:914375-915817:-1:exon

AWJ20_4916
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PRP8
locus tag: AWJ20_4916
product: U4/U6-U5 snRNP complex component PRP8
transcript id: XM_018882020.1
SIO_010081: AWJ20_4916
subclass of: SO_0000673
so part of: AWJ20_4916
location: complement(<914375..>915817)
location: region:914375-915817:-1
so has part: feature:914375-915817:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:914375-915817:-1:exon

AWJ20_4916
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PRP8
locus tag: AWJ20_4916
inference: similar to AA sequence:KEGG_Orthology:K12856
note: Component of U4/U6-U5 snRNP complex; involved in second catalytic step of splicing; participates in spliceosomal assembly through its interaction with U1 snRNA; largest and most evolutionarily conserved protein of the spliceosome; mutations in its human ortholog, PRPF8, cause Retinitis pigmentosa and missplicing in Myelodysplastic syndrome; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10377396]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10449419]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 17934474]; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 11720284]; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 11720285]; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 17934474]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 17934474]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0030619 - U1 snRNA binding [Evidence IDA] [PMID 23393194]; GO_function: GO:0030620 - U2 snRNA binding [Evidence IDA] [PMID 23393194]; GO_function: GO:0030623 - U5 snRNA binding [Evidence IEA]; GO_function: GO:0030623 - U5 snRNA binding [Evidence IDA] [PMID 23393194]; GO_function: GO:0030623 - U5 snRNA binding [Evidence IDA] [PMID 9848662]; GO_function: GO:0017070 - U6 snRNA binding [Evidence IEA]; GO_function: GO:0017070 - U6 snRNA binding [Evidence IDA] [PMID 23393194]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0097157 - pre-mRNA intronic binding [Evidence IDA] [PMID 23393194]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IMP] [PMID…
codon start: 1
product: U4/U6-U5 snRNP complex component PRP8
translation: MLDPLEVHMLDFPNISIRPSELQLPFQDAMKIEKLADTILKATEPKMLLYNLYDDWLIDNKTEPGTAFSRLILILRALHVNQEKAKLILRPDRSVLTEEHHLWPSFTTEQWINVENQLSDLILNDYGKKNNVNVASLTQHEIRDLILGQEIKAPSLKRQEMADIDQQRQDQQSQLTALKTKTQNVHGDEMVVVTTSNYEQESFSSKTDWRNRAIASTSINLRTKHIYVSSEDIRDDSQNYTYILPKNILKKFTQISDLRAQVGGFLYGVSPPDNPQIKEIRVIALVPQVGNANSVQLPLKLPSTGGSEPLLKGLEPLGWIHTQAQETPVLSAIDVTTQAKIMDANSGAAGGWDSNAITMTVSFTPGSVTLSAFSLKPEGYEWGSRNRDIAAINPLGYSTKFGEKCQLLLSDRINGYFLVPEDSVWNYAFMGAAWSANAAYELKIDVPLPYYHELHRPIHFTSFNDLEDNVIELDKQDVFA
SIO_010081: AWJ20_4916
subclass of: SO_0000673
so part of: AWJ20_4916
location: complement(914375..915817)
location: region:914375-915817:-1
so has part: feature:914375-915817:-1:exon

XP_018736440.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:914375-915817:-1:exon

AWJ20_4917
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PRP8
locus tag: AWJ20_4917
so part of: sequence
location: complement(<916027..>921720)
location: region:916027-921720:-1
so has part: feature:916027-921720:-1:exon
subclass of: SO_0000010

30037101
type: Gene
SIO_000068: ncbigene

position:916027:-1
position: 916027
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:921720:-1
position: 921720
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:916027-921720:-1:exon

AWJ20_4917
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PRP8
locus tag: AWJ20_4917
product: U4/U6-U5 snRNP complex component PRP8
transcript id: XM_018882021.1
SIO_010081: AWJ20_4917
subclass of: SO_0000673
so part of: AWJ20_4917
location: complement(<916027..>921720)
location: region:916027-921720:-1
so has part: feature:916027-921720:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:916027-921720:-1:exon

AWJ20_4917
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PRP8
locus tag: AWJ20_4917
inference: similar to AA sequence:KEGG_Orthology:K12856
note: Component of U4/U6-U5 snRNP complex; involved in second catalytic step of splicing; participates in spliceosomal assembly through its interaction with U1 snRNA; largest and most evolutionarily conserved protein of the spliceosome; mutations in its human ortholog, PRPF8, cause Retinitis pigmentosa and missplicing in Myelodysplastic syndrome; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10377396]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10449419]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 17934474]; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 11720284]; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 11720285]; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 17934474]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 17934474]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0030619 - U1 snRNA binding [Evidence IDA] [PMID 23393194]; GO_function: GO:0030620 - U2 snRNA binding [Evidence IDA] [PMID 23393194]; GO_function: GO:0030623 - U5 snRNA binding [Evidence IEA]; GO_function: GO:0030623 - U5 snRNA binding [Evidence IDA] [PMID 23393194]; GO_function: GO:0030623 - U5 snRNA binding [Evidence IDA] [PMID 9848662]; GO_function: GO:0017070 - U6 snRNA binding [Evidence IEA]; GO_function: GO:0017070 - U6 snRNA binding [Evidence IDA] [PMID 23393194]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0097157 - pre-mRNA intronic binding [Evidence IDA] [PMID 23393194]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IMP] [PMID…
codon start: 1
product: U4/U6-U5 snRNP complex component PRP8
translation: MSGRNPGAPPGFPGAGKRPNGGPPPPPPPPGGAGVKRKPGTGGLAPPPPPPPSGGKRRTANGSHPPPPPPPPSRPPPAEKREEERRLRALERKRKWQQLQKQKYGAKQGKATFVHSTKVDMPPEHLRKIIRDHGDLSTKRVAADKRSYLGALKFIPHAVVKLMENMPQPWEQVREVKVLYHITGAITFVNEVPRVIEPVYTAQWATMWTMMRREKRDRRHFKRMRFPPFDDEEPPISWSENIEIAEPGDAIQMELDQEEDSPVYEWFYDHRPLIEDPKYVPGPAYKKWNLELPQMANLYRLASPLVADIATRNDLYLFDKKSFFTAKALNTAIPGGPKFEPLYKDVDEDNEDFGEFNAIDRIIFRNPIRTEYKIAFPHLYNSLPRSVQIDWYHDPQDVHIKTEDPDLPAYYYDPAINPITARRREIDEQEADDLILDDDLEEEEEEEEEEEKEGEQRSTGFTLGDDFETFLENVPLTTDNTSHAIALWWAPFPFNRRSGTMVRAQDVALVKNWYVQHAPDGNPVKVRVSYQKLLKTYVLNALKTKPPSNQKKRYLLKSLKNTKFFQQTTIDWVEAGLQLCRQGFTMLNLLIHRKGLTYLHLDYNFNLKPIKTLTTKERKRSRFGNAFHLMREILRVVKLIVDAHVQYRLGNVDAYQLADGLHYTLNHLGQLTGIYRYKYKVMHQIRTCKDLKHVIYYRFNSVIGKGPGCGFWQPAWRVWLFFLRGTIPLLERWLGNLLARQFEGRHSKAVAKTITKQRVESYYDLELRASVLNDILDMIPEGIKQNKAKTIIQHLSEAWRCWKANIPWKVPGLPAPIENIILRYVKAKADGWISVAHYNRERIKRGTTVEKTVAKKNLGRLTRLWLKSEQERQHNFSKDGPYVAPEDAVAIFSTMVHWLESRKFSPIPFPPLSYKHDTKLLVLALEGLKESYSVKNRLNQSQREELALIEQAYDNPHECLSRIKRFLLTQRVFKEVGLDMMDYYSHILPVYEIDPLEKITDAYLDQYLWYEADKRHLFPNWIKPSDSEVPPLLVYKWCQGINNLQDVWDVSEGQCNVMLQTTLSKMAEKIDFTLLNRLLRLIVDSNIADYITAKNNVALSYKDMTHVNQYGLIRGLQFSSFVMQYYGLVLDLLLLGLPRASELAGPPQQPNDFLQFKDEETEVNHPIRLYIRYVDKVHILFRFRATEARDLIQRFLTENPDPNFENVVGYNNKKCWPRDSRMRLMRHDVNLGRAVFWEMKNRLPRSLTTFEWEDTFASVYSRDNPNLLFSMVGFEVRILPKSRVENDIQIRDSVWNLTNEETKERTAYAFLRVTDEDIAKFNNRIRQILMSSGSTTFTKIANKWNTALISLFTYYREAAVASENLLDTLVKCETKIQTRVKIGLNSKMPSRFPPAVFYTPKELGGLGMLSASHILIPTSDLRWSKQTDTGITHFRSGMTHQDDQLIPNIFRYIASWESEFIDSQNVWAEYAMKRQEASQQNRRLTLEDLEDRWDRGLPRINTLFQKDRHTLAYDKGHRIRTQFRQYSLAKVNPFWWTSQRHDGKLWNLNAYRTDVIQALGGIETILEHTLFKGTGFDNWEGLFWEKASGFEDSMKFKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFLVQLDLTGIFLHGKIPTLKISLIQIFRAHLWQKIHESIIFDICHVLDAEMDTLQIENVNKESIHPRKSYKMNSSAADIVLHSTYKWSVSGPSLLNDSKDVMDFATANKFWLDIQLRYGDYDSHDISRYTRAKFLDYTSDGISIYPSPTGAMIGVDLAYNMYDAYGNWFPGLKPLMQQAMSKIMKANPALFVLRERIRKGLQLYQSQPQEAFLNSNNYSELFGKDVQFFIDDSNVYRVTVHKTFEGNLTTKPINGAIFIFNPRTGK
SIO_010081: AWJ20_4917
subclass of: SO_0000673
so part of: AWJ20_4917
location: complement(916027..921720)
location: region:916027-921720:-1
so has part: feature:916027-921720:-1:exon

XP_018736441.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:916027-921720:-1:exon

AWJ20_4918
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: STS1
locus tag: AWJ20_4918
so part of: sequence
location: complement(<926261..>927481)
location: region:926261-927481:-1
so has part: feature:926261-927481:-1:exon
subclass of: SO_0000010

30037102
type: Gene
SIO_000068: ncbigene

position:926261:-1
position: 926261
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:927481:-1
position: 927481
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:926261-927481:-1:exon

AWJ20_4918
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: STS1
locus tag: AWJ20_4918
product: Sts1p
transcript id: XM_018882022.1
SIO_010081: AWJ20_4918
subclass of: SO_0000673
so part of: AWJ20_4918
location: complement(<926261..>927481)
location: region:926261-927481:-1
so has part: feature:926261-927481:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:926261-927481:-1:exon

AWJ20_4918
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: STS1
locus tag: AWJ20_4918
inference: similar to AA sequence:KEGG_Orthology:K11888
note: Protein required for localizing proteasomes to the nucleus; involved in cotranslational protein degradation; mediates interaction between nuclear import factor Srp1p and the proteasome; Sts1p and Srp1p couple proteasomes to nascent polypeptides emerging from the ribosome for cotranslational degradation; involved in ubiquitin-mediated protein degradation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10913188]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 8065366]; GO_process: GO:0071630 - nucleus-associated proteasomal ubiquitin-dependent protein catabolic process [Evidence IEA]; GO_process: GO:0071630 - nucleus-associated proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 21075847]; GO_process: GO:0031144 - proteasome localization [Evidence IEA]; GO_process: GO:0031144 - proteasome localization [Evidence IMP] [PMID 21075847]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Sts1p
translation: MVVSAVLPPRTGWGFEFASSSESASQVQDRPGGQFGSPVFGLAGENNSGVSAGATGFAGAATAPSTPTLRSGKRKMNSMDRYDSDEDHNIENDNDNDVYDEYDEHRNFASHSQSRLNGGGPSGTRSVPGSAFRGSNSSVLNSEMDLFSSSFQKRLSTGVSNRLKAHATGSKVSKRARTHTAMGHPLPIGRILESLDKKNLRSIIENLCQTHPYLVGEISNLAPRITVSTAIEHLKNLLSAVYNSLPFKGDQRGDYAYLRVRPAVEEFLSALSDYTSNFLPPTESQPSNTLAFLDSATDLLHQLPVWSNPVNNHHQWVCYDDIASAWIVAIREASKRAGGLGLVHDGWQVKLDKHNEKSDDRLKDAVACIRNELSWLNSNNDEANSTPKQNIFSIYNPHSQTPSMWT
SIO_010081: AWJ20_4918
subclass of: SO_0000673
so part of: AWJ20_4918
location: complement(926261..927481)
location: region:926261-927481:-1
so has part: feature:926261-927481:-1:exon

XP_018736442.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:926261-927481:-1:exon

AWJ20_4919
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: THS1
locus tag: AWJ20_4919
so part of: sequence
location: <928588..>930895
location: region:928588-930895:1
so has part: feature:928588-930895:1:exon
subclass of: SO_0000010

30037103
type: Gene
SIO_000068: ncbigene

position:928588:1
position: 928588
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:930895:1
position: 930895
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:928588-930895:1:exon

AWJ20_4919
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: THS1
locus tag: AWJ20_4919
product: threonine--tRNA ligase THS1
transcript id: XM_018882023.1
SIO_010081: AWJ20_4919
subclass of: SO_0000673
so part of: AWJ20_4919
location: join(<928588..928674,928835..>930895)
location: region:928588-930895:1
so has part: feature:928588-928674:1:exon
so has part: feature:928835-930895:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:928588-928674:1:exon

position:928674:1
position: 928674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:928835-930895:1:exon

position:928835:1
position: 928835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

AWJ20_4919
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: THS1
locus tag: AWJ20_4919
inference: similar to AA sequence:KEGG_Orthology:K01868
note: Threonyl-tRNA synthetase; essential cytoplasmic protein; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IMP] [PMID 2995918]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0016876 - ligase activity, forming aminoacyl-tRNA and related compounds [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004829 - threonine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004829 - threonine-tRNA ligase activity [Evidence ISA] [PMID 2995918]; GO_function: GO:0004829 - threonine-tRNA ligase activity [Evidence IDA] [PMID 8143729]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IMP] [PMID 10471698]; GO_process: GO:0043039 - tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006435 - threonyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006435 - threonyl-tRNA aminoacylation [Evidence ISA] [PMID 2995918]; GO_process: GO:0006435 - threonyl-tRNA aminoacylation [Evidence IDA] [PMID 8143729]; GO_process: GO:0006412 - translation [Evidence IEA]
codon start: 1
product: threonine--tRNA ligase THS1
translation: MAAAGVSELIEKVADATIAPKKGPPALYPAEPKFSFIDERLKFFDELKKAQDEEIAKKERKPIKITLKDGSVREGTAWETSPADIAKEISKSLFEKTVISKVNGELWDLERPFEEDSKLELLDFDSEDGKKVFWHSSAHVLGEACECHFGAHLCVGPPTDDGFFYEMSIDNGDRAVSSADFPAVEAVTKRAVKDKQRFERLVVSKENLLKMFAYNKYKQTLIQSKIPDGTSSTVYRCGPLIDLCRGPHVPHTGRIKSIKLLKNSASYFLGDSANDSLQRIYGVSFPDKKQLDEHLKFLEEAAKRDHRKIGKDQELFMFHDMSPGSCFWLPHGARIYNTLGDFLRTEYRKRGYEEVITPNMYNAKLWETSGHWANYKENMFTFDVEKEKFGLKPMNCPGHCLMFKARERSYRELPWRVADFGVIHRNEFSGALSGLTRVRRFQQDDAHIFCRQDQIEAEITGIFEFLKHVYGVFGFDFKMELSTRPEKYVGQLETWNDAEAKLASALDSWGAKWELNPGDGAFYGPKIDIMISDALKRWHQCATIQLDFQLPDRFGLQFRGADVTDAAGEVQHYDRPVMIHRALYGSFERMIAILTEHFFGKWPLWLSPRQVLVVPVGVKYFDYAQKVRDYFHENGFFADVDVGPNTLQKKVRQGQLQQYNYLLVVGEEEESSNTVNIRKRDDPSKHGKTETVSLEDAVAKMKQLVASKSLVDNVF
SIO_010081: AWJ20_4919
subclass of: SO_0000673
so part of: AWJ20_4919
location: join(928588..928674,928835..930895)
location: region:928588-930895:1
so has part: feature:928588-928674:1:exon
so has part: feature:928835-930895:1:exon

XP_018736443.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:928588-928674:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:928835-930895:1:exon

AWJ20_4920
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SIF2
locus tag: AWJ20_4920
so part of: sequence
location: complement(<931120..>932925)
location: region:931120-932925:-1
so has part: feature:931120-932925:-1:exon
subclass of: SO_0000010

30037105
type: Gene
SIO_000068: ncbigene

position:931120:-1
position: 931120
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:932925:-1
position: 932925
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:931120-932925:-1:exon

AWJ20_4920
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SIF2
locus tag: AWJ20_4920
product: Sif2p
transcript id: XM_018882025.1
SIO_010081: AWJ20_4920
subclass of: SO_0000673
so part of: AWJ20_4920
location: complement(<931120..>932925)
location: region:931120-932925:-1
so has part: feature:931120-932925:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:931120-932925:-1:exon

AWJ20_4920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SIF2
locus tag: AWJ20_4920
inference: similar to AA sequence:KEGG_Orthology:K04508
note: WD40 repeat-containing subunit of Set3C histone deacetylase complex; complex represses early/middle sporulation genes; antagonizes telomeric silencing; binds specifically to the Sir4p N-terminus; GO_component: GO:0070210 - Rpd3L-Expanded complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0034967 - Set3 complex [Evidence IDA] [PMID 11711434]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9651685]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0016575 - histone deacetylation [Evidence IDA] [PMID 11711434]; GO_process: GO:0031939 - negative regulation of chromatin silencing at telomere [Evidence IMP,IPI] [PMID 9651685]; GO_process: GO:0045835 - negative regulation of meiosis [Evidence IPI] [PMID 11711434]; GO_process: GO:0032874 - positive regulation of stress-activated MAPK cascade [Evidence IMP] [PMID 18487345]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IMP] [PMID 19379692]
codon start: 1
product: Sif2p
translation: MGEEEEKRLRELESQNSSNNHKPDEKVSAIEAENGSANAKSITQNSTQDHENGETDESQVATNKSHHARDHHKVGLLGNVKSNSLALHTLRPSYSLEGSQTSQFNPVKSNLVAYGTVEGARILSYKEKSRSPQTVDADKDVEMKDIDSTSAVAVAVTDASNSKATSNTDSKIDDSNAISTNKPTDETSKKDNSEANSNSNTNSSLITETIVLTHAPNEDKEITALTWSPNGTILATGSFDGKIRIWTSEGKLRSLLALHRAPILAIRFNPGGRLLGSVDCTGTVIVWEVSNGEIREFHGEKDLANSLTNHQPVAQSETSITSSNLQTQQPHSQTQSPTHQYPSQSPSLSSHGQDASKFTANNVETETESDQPNGGDLTWIDDTTYVTTGQSQSILVYKLGEQQPLLRLSAHTQSINSLQFEPSTKLLASASDDYTVRIWHGISPVSIMTLAGHTAPVIDIKWLSGSALEHSSLPLLISSSIDSTIRIWDIAKGTCISLLKLHDSPLFTTELSPNNRYIASGSAGGELVVWDIQEVLKYDANSHQTDSIVCRPIGRHKLDQSPSDPVPTDTTVSSLSWSPASDGLFVGYTTVSEIIPFSLII
SIO_010081: AWJ20_4920
subclass of: SO_0000673
so part of: AWJ20_4920
location: complement(931120..932925)
location: region:931120-932925:-1
so has part: feature:931120-932925:-1:exon

XP_018736444.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:931120-932925:-1:exon

AWJ20_4921
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: EXO84
locus tag: AWJ20_4921
so part of: sequence
location: <934139..>936700
location: region:934139-936700:1
so has part: feature:934139-936700:1:exon
subclass of: SO_0000010

30037106
type: Gene
SIO_000068: ncbigene

position:934139:1
position: 934139
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:936700:1
position: 936700
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:934139-936700:1:exon

AWJ20_4921
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: EXO84
locus tag: AWJ20_4921
product: Exo84p
transcript id: XM_018882026.1
SIO_010081: AWJ20_4921
subclass of: SO_0000673
so part of: AWJ20_4921
location: <934139..>936700
location: region:934139-936700:1
so has part: feature:934139-936700:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:934139-936700:1:exon

AWJ20_4921
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: EXO84
locus tag: AWJ20_4921
note: Exocyst subunit with dual roles in exocytosis and spliceosome assembly; subunit of the the exocyst complex which mediates polarized targeting and tethering of post-Golgi secretory vesicles to active sites of exocytosis at the plasma membrane (PM) prior to SNARE-mediated fusion; required for exocyst assembly and targeting the complex to specific sites on the bud tip PM; associates the U1 snRNP; role in pre-mRNA splicing and prespliceosome formation; possible Cdc28 substrate; GO_component: GO:0005933 - cellular bud [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 10438536]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 10438536]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0000145 - exocyst [Evidence IDA] [PMID 10438536]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 10438536]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_component: GO:0030133 - transport vesicle [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IMP] [PMID 10438536]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IMP] [PMID 15788396]; GO_process: GO:0001927 - exocyst assembly [Evidence IMP] [PMID 15788396]; GO_process: GO:0051601 - exocyst localization [Evidence IMP] [PMID 15788396]; GO_process: GO:0006887 - exocytosis [Evidence IEA]; GO_process: GO:0006887 - exocytosis [Evidence IGI,IMP] [PMID 10438536]; GO_process: GO:0006887 - exocytosis [Evidence IMP] [PMID 15788396]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0000245 - spliceosomal complex assembly [Evidence IMP,IPI] [PMID 11425851]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0090522 - v…
codon start: 1
product: Exo84p
translation: MSELPALSLRKHRQTMISDAKRPDLSQFAGIPGQQPASQDSTLQLPTVGIKDREKVGKLVKKRLSSRPTPQMYGKDAGSAPAMPVNAHDLILEVSNNDYPLPPKQRYNNNHAGGIDKASVNRDDFDGDERTGARTGPGSGTTGNFYPVPLGPGSGIPPGDKTEGTKGLGPGHGPVKTAPDLPSKDYPDREYPSQPGHGVPYGQNDRRHLASTAIPIQNDRKPFLAPDFDAKTFISDNLSNATDVEISEFAKKLSSLKEDLVQEKKDEMYSNYQKFLLVGRTISGLNTDLETLRKILNDLNLATSALKDDAARHLSLNNNNSSSTQLNRNMSLSANESKMSGLSDSSGTSSGPGAGSSLSPSSAGYDRRASVLAMEEFWQRNLTSLFRHVEGAQKYLPIIPGRHVIKEQGGWYELNAATWKPLQPAHMFLLNDNLLIATKKRSREHNSASVQPTRALIANQCWSLLDIDVTEVKSYPQIGQRVLQRAISIKFESMTYVYRAEKSENHDVFLQEFRRVRDELYQLKNSRRTNGLHSHTRSASGSSFNNIPPPSPSTGGGAGVGPIRRHNGVARSDSLSLLPSSASSSSKSALVREVDQTLSELDLKIAHRQFSAVVDMILKSKPRFQQVSDTLSAETSVPIPRPSTPKSSSNLTVGSGAGAGAGTATGPAGSSYTQFTGDILPIDKLEARITTTADLLLQRLSEEYLSRKELGEFVKMLTQLDAADSAKTTLMNMRHFVIQRRIKQVPFQGDIPGYIRQVAFITFQLIVSTVEIYRACFPDPQDSSTIAVWAKAEVDSYSMLFARQLHNVNPSTATYQQCCDITRDESACLKTVNLDFSFMLDYMFDATAAKRKH
SIO_010081: AWJ20_4921
subclass of: SO_0000673
so part of: AWJ20_4921
location: 934139..936700
location: region:934139-936700:1
so has part: feature:934139-936700:1:exon

XP_018736445.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:934139-936700:1:exon

AWJ20_4922
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TRI1
locus tag: AWJ20_4922
so part of: sequence
location: complement(<937041..>938000)
location: region:937041-938000:-1
so has part: feature:937041-938000:-1:exon
subclass of: SO_0000010

30037107
type: Gene
SIO_000068: ncbigene

position:937041:-1
position: 937041
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:938000:-1
position: 938000
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:937041-938000:-1:exon

AWJ20_4922
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TRI1
locus tag: AWJ20_4922
product: Tri1p
transcript id: XM_018882027.1
SIO_010081: AWJ20_4922
subclass of: SO_0000673
so part of: AWJ20_4922
location: complement(<937041..>938000)
location: region:937041-938000:-1
so has part: feature:937041-938000:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:937041-938000:-1:exon

AWJ20_4922
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TRI1
locus tag: AWJ20_4922
inference: similar to AA sequence:KEGG_Orthology:K15223
note: Non-essential sumoylated hypothetical protein; similar to components of human SWI/SNF complex including SMRD3; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm, nucleus and nucleolus; TRI1 has a paralog, UAF30, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]
codon start: 1
product: Tri1p
translation: MNEALTIGQAILGVSDLSVISSKRIRRSLQELLNQDLTAYKKELDNVIVERFVLIQEKRNHADTNSEDGQKTGVQNPRNGTDHEKPSNGHSSNGTDSHKNSQKNHQSQTTNGTARKTVASGPGSDPLSSPNSSLSDSSSAVTGLNTPAKSVSSKTTTASKSSKPKPSVKRSVDDDAEMAAKLHAELNRPSLRRETRQPASKRSRKTKKRRADDDSDEDKPKRKANPNNPFMRPVVLSPALSTVLGETEMPRPHIVKALWKYIKEHKLQNPENMKEIICDDTLRPVFGSSKCGTPASGGWGSAPDPVAPLAPLESVARGL
SIO_010081: AWJ20_4922
subclass of: SO_0000673
so part of: AWJ20_4922
location: complement(937041..938000)
location: region:937041-938000:-1
so has part: feature:937041-938000:-1:exon

XP_018736446.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:937041-938000:-1:exon

AWJ20_4923
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CAB2
locus tag: AWJ20_4923
so part of: sequence
location: complement(<938658..>941835)
location: region:938658-941835:-1
so has part: feature:938658-941835:-1:exon
subclass of: SO_0000010

30037108
type: Gene
SIO_000068: ncbigene

position:938658:-1
position: 938658
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:941835:-1
position: 941835
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:938658-941835:-1:exon

AWJ20_4923
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CAB2
locus tag: AWJ20_4923
product: phosphopantothenate--cysteine ligase CAB2
transcript id: XM_018882028.1
SIO_010081: AWJ20_4923
subclass of: SO_0000673
so part of: AWJ20_4923
location: complement(join(<938658..940304,940996..>941835))
location: region:938658-941835:-1
so has part: feature:940996-941835:-1:exon
so has part: feature:938658-940304:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:940996-941835:-1:exon

position:940996:-1
position: 940996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:938658-940304:-1:exon

position:940304:-1
position: 940304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

AWJ20_4923
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CAB2
locus tag: AWJ20_4923
inference: similar to AA sequence:KEGG_Orthology:K01922
note: Subunit of the CoA-Synthesizing Protein Complex (CoA-SPC); subunits of this complex are: Cab2p, Cab3p, Cab4p, Cab5p, Sis2p and Vhs3p; probable phosphopantothenoylcysteine synthetase (PPCS), which catalyzes the second step of coenzyme A biosynthesis from pantothenate; null mutant lethality is complemented by E. coli coaBC (encoding a bifunctional enzyme with PPCS activity); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14690591]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14690591]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004632 - phosphopantothenate--cysteine ligase activity [Evidence IEA]; GO_function: GO:0004632 - phosphopantothenate--cysteine ligase activity [Evidence ISS] [PMID 11923312]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence ISS] [PMID 11923312]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence IGI] [PMID 19266201]
codon start: 1
product: phosphopantothenate--cysteine ligase CAB2
translation: MIHTSGPKAETAVDREAPEFPPAQSTDEDSYFKHNDEPSYLASLQVQVAEFIKIHKDRKIALVTSGGTTVPLENNTVRFIDNFSAGTRGSTSAEYFLEAGYAVIFLHRQFSLLPYSRHYSHSTNCFLDYMVEGNDNHSVQVDKKYEEQMLQVLKKYQYAKRNKLLLLVPFTTVNQYLFTLRMISQELGQQKAQNRSTTLFYLAAAVSDFFLPRSRVADHKIQSQGTGKLVVDLDPVPKFLKRLVDEWTPGAMIVSFKLETDSSLLIGKARGALERYSHQLGKKGDEVDQAEIERQVKAAVAAKEYFSELLERNASRHVQVRAIRAVGGGARSTRREFLNQQFEPIFQARNLSSLLSAVDTVYDNLAGLGIYENVTVALDETKEKVNGNGVRGLDNLDPFAGLFGNDSGRAYDNNERRNSGSKLELDAVVKLAQAKRFYAKTGTDLGNGEGNGYANMTFKNIFGGAEILSLDATMGTRTRSSYIANFSTPVLSVLPPQWRLETVAYMTSRTIPWASNEQLVRGMSTKIKSVPSLLKRPGQTPSPQQELGFEAVWRTIACSPGASSSVRDEAGNSLKASIFHSIAYDTRDSILLATHGNYYKFSHELAGLGGIGNAFYKTSFESQHNWLLFASPPTTSSSSSEPSTISSQQTTEPVSRTSLHIGTKAGLLWMLARPSSNSDTPPPSNLMDRFYLGGPNDVRGFYSSGIGPRDQSDSLGGEALLAAGVSLLTPIPKIKRTTPLRFHTFLNAGNLLALDRIGSSTTTAPTTSSILSSTAAELLNTPSISTGVGLLYCHPAARFELNITFPLIARRNEATRKGIQFGVGLSFL
SIO_010081: AWJ20_4923
subclass of: SO_0000673
so part of: AWJ20_4923
location: complement(join(938658..940304,940996..941835))
location: region:938658-941835:-1
so has part: feature:940996-941835:-1:exon
so has part: feature:938658-940304:-1:exon

XP_018736447.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:940996-941835:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:938658-940304:-1:exon

AWJ20_4924
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PUB1
locus tag: AWJ20_4924
so part of: sequence
location: <949197..>950243
location: region:949197-950243:1
so has part: feature:949197-950243:1:exon
subclass of: SO_0000010

30037109
type: Gene
SIO_000068: ncbigene

position:949197:1
position: 949197
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:950243:1
position: 950243
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:949197-950243:1:exon

AWJ20_4924
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PUB1
locus tag: AWJ20_4924
product: Pub1p
transcript id: XM_018882029.1
SIO_010081: AWJ20_4924
subclass of: SO_0000673
so part of: AWJ20_4924
location: <949197..>950243
location: region:949197-950243:1
so has part: feature:949197-950243:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:949197-950243:1:exon

AWJ20_4924
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PUB1
locus tag: AWJ20_4924
inference: similar to AA sequence:KEGG_Orthology:K13201
note: Poly (A)+ RNA-binding protein; abundant mRNP-component protein that binds mRNA and is required for stability of many mRNAs; component of glucose deprivation induced stress granules, involved in P-body-dependent granule assembly; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8413212]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8413213]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 23222640]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 18981231]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8413212]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 15964806]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003729 - mRNA binding [Evidence IDA,IMP] [PMID 8413212]; GO_function: GO:0003729 - mRNA binding [Evidence IDA,IMP] [PMID 8413213]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008266 - poly(U) RNA binding [Evidence IDA] [PMID 8413213]; GO_process: GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [Evidence IDA] [PMID 10892745]; GO_process: GO:0043488 - regulation of mRNA stability [Evidence IMP] [PMID 15964806]; GO_process: GO:0034063 - stress granule assembly [Evidence IMP] [PMID 18981231]
codon start: 1
product: Pub1p
translation: MVNNHEIKINWAFQTQQAIKDLDFFNIFVGDLSSDVNDELLSQTFNHFPSLVEARVMWDMTTGRSRGYGFVSFKDEADATTALETMDGKLIGSRAIRLNWAQQKVGGMAGGPGGGPGGYQNQQGHHHHHHHHHPHSHHQQPYYNNSGGRQGGGSGRRGGPGGASGGPGGGYGPGGGYGGGPGGGGGGAGGYGGAGGSYGSSGGSYGGSGGYSGPNSGISVGPSHSGTSSGAASVSSSSDSGQVPAGAMTYDMVFHATPNWQTTVYVGNLAPYTPPNDLLSVLQSFGYIVDFKFQPERGYAFVKFDTHERAAMAIVQLSGYQFNGRLLKCGWGKDRNNSHSNYQPYRQY
SIO_010081: AWJ20_4924
subclass of: SO_0000673
so part of: AWJ20_4924
location: 949197..950243
location: region:949197-950243:1
so has part: feature:949197-950243:1:exon

XP_018736448.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:949197-950243:1:exon

AWJ20_4925
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: UBP1
locus tag: AWJ20_4925
so part of: sequence
location: <951662..>953401
location: region:951662-953401:1
so has part: feature:951662-953401:1:exon
subclass of: SO_0000010

30037110
type: Gene
SIO_000068: ncbigene

position:951662:1
position: 951662
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:953401:1
position: 953401
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:951662-953401:1:exon

AWJ20_4925
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: UBP1
locus tag: AWJ20_4925
product: Ubp1p
transcript id: XM_018882030.1
SIO_010081: AWJ20_4925
subclass of: SO_0000673
so part of: AWJ20_4925
location: <951662..>953401
location: region:951662-953401:1
so has part: feature:951662-953401:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:951662-953401:1:exon

AWJ20_4925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: UBP1
locus tag: AWJ20_4925
inference: similar to AA sequence:KEGG_Orthology:K11870
note: Ubiquitin-specific protease; removes ubiquitin from ubiquitinated proteins; cleaves at the C terminus of ubiquitin fusions irrespective of their size; capable of cleaving polyubiquitin chains; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 1429680]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15635103]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 15635103]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA] [PMID 1429680]; GO_process: GO:0016579 - protein deubiquitination [Evidence IDA] [PMID 1429680]; GO_process: GO:0016579 - protein deubiquitination [Evidence IDA] [PMID 2050695]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]
codon start: 1
product: Ubp1p
translation: MLSDTIKGSMDMASASMKYLYDKAATKVLGPMPFDESELTEAEKANGIEEMRMYNVGGIYNEGNTCFMNSVVQSFASLQYLEEFLDDSLGIPRTQRVLPELKKPVIPESASDGLTENAGETGTSIASTANDNSGLNGSLESADTLNGGSGNYEQGGQSDKVESRAGTLPETQLKLHQPSTNGYFSLPRNESQRPMTPGTAKVSLLKTLLSLMSQLNEKKPSSHTYTTTQLIKSISYVLGKDADVLTGYDQEDAQEFFQQILSCLEKEVKKTPTSNTAWEQRRLRESSVETNASIDNETNGSANSASSNNSSNNNNNEKLLTPFDGVFATRVGCVKCGEMEGIRRGTLSSVDLSLQNGGDDFELEGLLAEYCAMETISGVECYRCSLNAYKTELETRLENQTVGALRNLYATRVEELKSALSDLVIDEAKYAKLKPTKLKELGDKTKQTMFAMPCADIMMIHINRSVFDLNTGYSRKNYAPVRFPVQLDMSPFIVDTNDPVNRDPSKPMAHIASGRRYLYNLKATVIHYGSHNFGHYVCFRKCEQGFWWRISDHSVDLTTEHEVLRTQGVFMLFYERDHE
SIO_010081: AWJ20_4925
subclass of: SO_0000673
so part of: AWJ20_4925
location: 951662..953401
location: region:951662-953401:1
so has part: feature:951662-953401:1:exon

XP_018736449.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:951662-953401:1:exon

AWJ20_4926
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: GUT1
locus tag: AWJ20_4926
so part of: sequence
location: complement(<954209..>955822)
location: region:954209-955822:-1
so has part: feature:954209-955822:-1:exon
subclass of: SO_0000010

30037111
type: Gene
SIO_000068: ncbigene

position:954209:-1
position: 954209
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:955822:-1
position: 955822
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:954209-955822:-1:exon

AWJ20_4926
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: GUT1
locus tag: AWJ20_4926
product: glycerol kinase
transcript id: XM_018882031.1
SIO_010081: AWJ20_4926
subclass of: SO_0000673
so part of: AWJ20_4926
location: complement(<954209..>955822)
location: region:954209-955822:-1
so has part: feature:954209-955822:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:954209-955822:-1:exon

AWJ20_4926
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: GUT1
locus tag: AWJ20_4926
inference: similar to AA sequence:KEGG_Orthology:K00864
note: Glycerol kinase; converts glycerol to glycerol-3-phosphate; glucose repression of expression is mediated by Adr1p and Ino2p-Ino4p; derepression of expression on non-fermentable carbon sources is mediated by Opi1p and Rsf1p; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17054397]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004370 - glycerol kinase activity [Evidence IEA,IEA]; GO_function: GO:0004370 - glycerol kinase activity [Evidence IMP,ISS] [PMID 8358828]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0019563 - glycerol catabolic process [Evidence IEA]; GO_process: GO:0006071 - glycerol metabolic process [Evidence IEA]; GO_process: GO:0006071 - glycerol metabolic process [Evidence TAS] [PMID 8358828]; GO_process: GO:0006072 - glycerol-3-phosphate metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]
codon start: 1
product: glycerol kinase
translation: MSPEPTVLEVAGELQMASIDRDAFKNVSDVPVDEEQYVLALDQGTTSARVIVFSSESVPVASHQVELNQHYPHPGWVEHDPMELIRACRECIDKVGDKLDAKRIPRKNVKALGITNQRETTVLWDKRNGQPVYNAIVWSDTRTEGTVVRLEQKPNADKVPKICGLHISTYFAAVKVRWILDNVPKAREVYEEGCLCFGTVDSWILYNFTNGARHITDATNASRSMFMNIQTLEYDAELVDFFDVPKLNLPDVVSSSEIYGYFSDDDAAFPSLPISGCLGDQSSALVGHLGFDKGDAKNTYGTGCFLLYNTGNDPVTSENGLLTTIAFQLKGQKPVYALEGSIAVAGSIIKWFRNNLGLIETSEQMSDLAGQVKDSAGVYFVTAFSGLFAPYWRRDARGTIVGLTAYTTRAHIARAAIEATCFQTRAILESMSRDSGVPFHKLLVDGGMSSSAVAMQIQSDILGMEVVRPGMREPTALGAAIVAGLATGVWNDLDHVRSKLQKRRTITSFTGSLTEKERDEQYRMWGRAVEKACGWVE
SIO_010081: AWJ20_4926
subclass of: SO_0000673
so part of: AWJ20_4926
location: complement(954209..955822)
location: region:954209-955822:-1
so has part: feature:954209-955822:-1:exon

XP_018736450.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:954209-955822:-1:exon

AWJ20_4927
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4927
so part of: sequence
location: complement(<961417..>962115)
location: region:961417-962115:-1
so has part: feature:961417-962115:-1:exon
subclass of: SO_0000010

30037112
type: Gene
SIO_000068: ncbigene

position:961417:-1
position: 961417
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:962115:-1
position: 962115
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:961417-962115:-1:exon

AWJ20_4927
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4927
product: hypothetical protein
transcript id: XM_018882032.1
SIO_010081: AWJ20_4927
subclass of: SO_0000673
so part of: AWJ20_4927
location: complement(<961417..>962115)
location: region:961417-962115:-1
so has part: feature:961417-962115:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:961417-962115:-1:exon

AWJ20_4927
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4927
codon start: 1
product: hypothetical protein
translation: MDQYIYNPPPPPPPPAPGSGVGSARKTNSRGNQTNSINSYHNRADSRQHPYKKPNIGAATSFGAASGSAMGGASGGGSVKMDGDLSSISPEIREAAKDIENWIAERRKKWPSAQRIVEKEKEDQQRQEREKKRHEFRLEHEGASSTAITASSTSSSSTKPLCRYFLKGKCKAGTKCQYSHDKTNPSTSTPKYKRFEAPDRSSLFKKLVQTDLDRENSRILDFLVYLGETGVL
SIO_010081: AWJ20_4927
subclass of: SO_0000673
so part of: AWJ20_4927
location: complement(961417..962115)
location: region:961417-962115:-1
so has part: feature:961417-962115:-1:exon

XP_018736451.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:961417-962115:-1:exon

AWJ20_4928
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: FMP37
locus tag: AWJ20_4928
so part of: sequence
location: <963337..>963648
location: region:963337-963648:1
so has part: feature:963337-963648:1:exon
subclass of: SO_0000010

30037113
type: Gene
SIO_000068: ncbigene

position:963337:1
position: 963337
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:963648:1
position: 963648
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:963337-963648:1:exon

AWJ20_4928
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: FMP37
locus tag: AWJ20_4928
product: Mpc1p
transcript id: XM_018882033.1
SIO_010081: AWJ20_4928
subclass of: SO_0000673
so part of: AWJ20_4928
location: <963337..>963648
location: region:963337-963648:1
so has part: feature:963337-963648:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:963337-963648:1:exon

AWJ20_4928
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: FMP37
locus tag: AWJ20_4928
codon start: 1
product: Mpc1p
translation: MCTTHFWGPVSNFGIPVAAIMDLKKDPTLISGPMTGSLIVYSLVFMRYATAVTPWNPLLFGCHVVNEIAQIGQGARFVNYWYLGGKDKATTAPAAPAASSEEK
SIO_010081: AWJ20_4928
subclass of: SO_0000673
so part of: AWJ20_4928
location: 963337..963648
location: region:963337-963648:1
so has part: feature:963337-963648:1:exon

XP_018736452.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:963337-963648:1:exon

AWJ20_4929
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4929
so part of: sequence
location: complement(<963887..>964933)
location: region:963887-964933:-1
so has part: feature:963887-964933:-1:exon
subclass of: SO_0000010

30037114
type: Gene
SIO_000068: ncbigene

position:963887:-1
position: 963887
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:964933:-1
position: 964933
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:963887-964933:-1:exon

AWJ20_4929
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4929
product: hypothetical protein
transcript id: XM_018882034.1
SIO_010081: AWJ20_4929
subclass of: SO_0000673
so part of: AWJ20_4929
location: complement(<963887..>964933)
location: region:963887-964933:-1
so has part: feature:963887-964933:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:963887-964933:-1:exon

AWJ20_4929
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4929
codon start: 1
product: hypothetical protein
translation: MKNYLELMAQRAEIFEITFGAEHVQLSSYTTGIYTSESTILRQPLNTQMIMRLDQIEALAVEENMSLGIRLKEFRVFISLLDSLSPQSLFEAYFFKAGYPMLFSLSDQAVISLPVQQLNPGGDSTGGGGPAKAVPRGIDISFVFLTTGPSTGSDIGTTSTTSHLPSDSDAIVESRNVSIIRRGISRAAAASDTMTTSGSTTTAAESIIGARSMSTVTDTDSLTSGGRNHNHNRRAYNFDGDDPSGSLTASGSMLVDSAHELNNNNNDDYEIQPSVRWNDNDDHELMAPDQTMHQQQPQPSTTESSLFVYQENDDEEEALDHELLTFASQLDAIGPTQNKSQAHGLFDD
SIO_010081: AWJ20_4929
subclass of: SO_0000673
so part of: AWJ20_4929
location: complement(963887..964933)
location: region:963887-964933:-1
so has part: feature:963887-964933:-1:exon

XP_018736453.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:963887-964933:-1:exon

AWJ20_4930
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4930
so part of: sequence
location: complement(<965985..>967706)
location: region:965985-967706:-1
so has part: feature:965985-967706:-1:exon
subclass of: SO_0000010

30037116
type: Gene
SIO_000068: ncbigene

position:965985:-1
position: 965985
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:967706:-1
position: 967706
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:965985-967706:-1:exon

AWJ20_4930
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4930
product: hypothetical protein
transcript id: XM_018882036.1
SIO_010081: AWJ20_4930
subclass of: SO_0000673
so part of: AWJ20_4930
location: complement(<965985..>967706)
location: region:965985-967706:-1
so has part: feature:965985-967706:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:965985-967706:-1:exon

AWJ20_4930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4930
codon start: 1
product: hypothetical protein
translation: MSWADEKKGVEAQLPVPVLEPRVESRETQKKKKKTWSLIFSVVAGVIFVGLFRSIVSSGFWPHFRLRFPHHCHGSDGDESGDLVWKELAKGSNVLHANITLPLDYNDRSAGNVTVALNKIPATHKDGSLGSILLNPGGPGGSGTNLLYRRGADISEIVEGRYDIIGFDPRGINWTSPNFYCGVGDKQISGFNAISNELLSTHGDNVSYGEQLAYGKLQGLACSSDDSGKYISTALVSTDMLHISRALGDEKLNYWGFSYGSILGNTFAQMYPESVGRMIVDGVMDAEDYYAGTWFSNLENTDNVTRTFYEACSASTNCPIEGSPDEIEHLFGDLITKLKFEPATVFDIESGSVGLVTYSGFLSSFFATLYSPVVWNRFANVTLDLLNGNALPFYQMYLAPGPDADSLADSAGYATLCGDASNATYPKTVTSPEALKNLVATLRKSSKWWSDNWLIASGCFGYKQTPVMLWDGPFQKVNASMLLIGNTYDPVTPISAARKMATFYTDSAVIHQSGVGHCSLAQKSSCTAELVRNWFNNGVLPPPNTVCPTDEVPFETAQEATVTDLFIPRFFSV
SIO_010081: AWJ20_4930
subclass of: SO_0000673
so part of: AWJ20_4930
location: complement(965985..967706)
location: region:965985-967706:-1
so has part: feature:965985-967706:-1:exon

XP_018736454.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:965985-967706:-1:exon

AWJ20_4931
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: GEP4
locus tag: AWJ20_4931
so part of: sequence
location: complement(<968037..>968618)
location: region:968037-968618:-1
so has part: feature:968037-968618:-1:exon
subclass of: SO_0000010

30037117
type: Gene
SIO_000068: ncbigene

position:968037:-1
position: 968037
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:968618:-1
position: 968618
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:968037-968618:-1:exon

AWJ20_4931
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: GEP4
locus tag: AWJ20_4931
product: Gep4p
transcript id: XM_018882037.1
SIO_010081: AWJ20_4931
subclass of: SO_0000673
so part of: AWJ20_4931
location: complement(<968037..>968618)
location: region:968037-968618:-1
so has part: feature:968037-968618:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:968037-968618:-1:exon

AWJ20_4931
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: GEP4
locus tag: AWJ20_4931
inference: similar to AA sequence:KEGG_Orthology:K01094
note: Mitochondrial phosphatidylglycerophosphatase (PGP phosphatase); dephosphorylates phosphatidylglycerolphosphate to generate phosphatidylglycerol, an essential step during cardiolipin biosynthesis; null mutant is sensitive to tunicamycin, DTT; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 20485265]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008962 - phosphatidylglycerophosphatase activity [Evidence IEA]; GO_function: GO:0008962 - phosphatidylglycerophosphatase activity [Evidence IDA,IGI,IMP] [PMID 20485265]; GO_process: GO:0032049 - cardiolipin biosynthetic process [Evidence IMP] [PMID 20485265]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006655 - phosphatidylglycerol biosynthetic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA]; GO_process: GO:0046838 - phosphorylated carbohydrate dephosphorylation [Evidence IMP] [PMID 20485265]
codon start: 1
product: Gep4p
translation: MNVSGTVNALRLFYNPWQFLPQITVSTFNQIPIPIPSANGKKPIRVVILDKDNCFAEPHKNVVWPEYEQHFAKLKEAYPDGVLIVSNTAGSGDDVGYKQAELLEQNTGIKVLHHTSKKPGCHSEIMDYLRTQNLATDASEVAVVGDRLMTDVLMANLMGSTSVWIRDGVVPPTSVLSRVEYALYDSLANKDQK
SIO_010081: AWJ20_4931
subclass of: SO_0000673
so part of: AWJ20_4931
location: complement(968037..968618)
location: region:968037-968618:-1
so has part: feature:968037-968618:-1:exon

XP_018736455.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:968037-968618:-1:exon

AWJ20_4932
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4932
so part of: sequence
location: complement(<972542..>973846)
location: region:972542-973846:-1
so has part: feature:972542-973846:-1:exon
subclass of: SO_0000010

30037118
type: Gene
SIO_000068: ncbigene

position:972542:-1
position: 972542
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:973846:-1
position: 973846
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:972542-973846:-1:exon

AWJ20_4932
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4932
product: hypothetical protein
transcript id: XM_018882038.1
SIO_010081: AWJ20_4932
subclass of: SO_0000673
so part of: AWJ20_4932
location: complement(<972542..>973846)
location: region:972542-973846:-1
so has part: feature:972542-973846:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:972542-973846:-1:exon

AWJ20_4932
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4932
codon start: 1
product: hypothetical protein
translation: MISQHSDIVGKSRAARRVDVDFGFSRGPGGSSSSSGSGAGGNNSGFGSQLSTIPPGLSVGGNNTGGSARGSGGAIIGVASGASAASGLGAGVGGGSNGSYPPSRTTTPALDPESFPTLGSSVQSSNSSSSNSRLPASVTAYHANLPPSDNSPEMLKRRLEERARQYLNYDTSKMAKFQELTSKYKDGQLDSKMVVFEYNRLFDIKPAQLELLIQDLAVLYKNLPSKRNALISAFDDWKSKQAFPALALASSASTSPSFSSSSGLSHSLPGSKTNLSSSWVSANRATPGSIKTSLASSSHFPSLSGATPSAAKPPPVSSSSPGNLSPVSATAKSFSTASLIGSAKVIPRASPSPAAAAKLSDSSFPSLPAAKPKRLPPVRAKTTSTPGPSVWTSGLSATPVDDSPPLSSSTPPPTSNKKKGKGKQVLFRLGAFEN
SIO_010081: AWJ20_4932
subclass of: SO_0000673
so part of: AWJ20_4932
location: complement(972542..973846)
location: region:972542-973846:-1
so has part: feature:972542-973846:-1:exon

XP_018736456.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:972542-973846:-1:exon

AWJ20_4933
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CRZ1
locus tag: AWJ20_4933
so part of: sequence
location: complement(<975920..>979045)
location: region:975920-979045:-1
so has part: feature:975920-979045:-1:exon
subclass of: SO_0000010

30037119
type: Gene
SIO_000068: ncbigene

position:975920:-1
position: 975920
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:979045:-1
position: 979045
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:975920-979045:-1:exon

AWJ20_4933
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CRZ1
locus tag: AWJ20_4933
product: DNA-binding transcription factor CRZ1
transcript id: XM_018882039.1
SIO_010081: AWJ20_4933
subclass of: SO_0000673
so part of: AWJ20_4933
location: complement(<975920..>979045)
location: region:975920-979045:-1
so has part: feature:975920-979045:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:975920-979045:-1:exon

AWJ20_4933
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CRZ1
locus tag: AWJ20_4933
codon start: 1
product: DNA-binding transcription factor CRZ1
translation: MTDSFQPELVLHQAADTLRAQAPVSGERHLFSVRKISTEPRMVVGDETRDGVSRGGLRTGAVVTNETITTVTADSGSVPTAPLFPETQKGSLKSSHEESTAATKARGEPPVKAFTTNPVSISTESTEVPVPVTVPVSTSTATSPLASRPISPTPATSKSTPSPLLATAVSGQGSDSSSGSSSGSTTETSKPPAVSSTTATATAESSERTTSINIEAEPKTSAALSPNLGSGPTEDSTSKPLAPTPTLIQKPLKTTTSTDKSDAITTTTSNSDSNAGSLAASSGLTSTGTDITDSNPVTSSDSVKSPESPSKSPISNTPASKLSPLDTPVINSETVPSTSHDSATPSTAGPTAGSLVHPTAGAPAEMSTFMHDTGDSAVPSATATRSGSATPSTTSTGNSSTTTASINPNINTSEDATIVRSDPDSKSLSPTSTTTTSTTPGKHACPYCPQTYTRNHNLKSHLLTHSYERPFTCETCSSKFRRLHDLKRHLKLHTGEKPFICEKCGRRFARGDALIRHLKSSGQCAGVRRASFVGDVDTGSSGASVAASAGEENIAASSTGVNPGSDSRGLGSRPDIFDHRNGTGLTVGSISGLKGQELVSHKGDISHFPGDGHASSTSSSGSSRGPVLVHQFSSGHGHTSSHGNSPTSSGASQGPQGPHGSHSQSPVPLPISASSSDSSSRPNKVLLLSSSNYSQAVPAPVLVTIQPNNTGPGSSSLPGMEESRLFIHAKPGLIGPRFEPPASLISYPSHSSSSNNNSHNSQGLPGSRPPAPPVLNHKPLMVDSRSLPPITGTRSYGYKQPGDLSQQASASATAGASAGASAGASAPSSSVQHQPIAPAPPQLPASTQTTTISSPVQSDRIQSVQSSTSNHRPGQLQTAVSGHPPAPAPSVHPTNHSLPRENSRIDPVPLQPQTLSQSHSHLQPQQQQKPQQVQMSTGHSILPQNEHLSPSQTHVPRPPSQPQLSFTRHNPSPSAADAPAPSTSISFTHTPPLPGTSHEPTDESSTDSLLRVVKILESRVRMLEERLHVTEGRLSFMESQR
SIO_010081: AWJ20_4933
subclass of: SO_0000673
so part of: AWJ20_4933
location: complement(975920..979045)
location: region:975920-979045:-1
so has part: feature:975920-979045:-1:exon

XP_018736457.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:975920-979045:-1:exon

AWJ20_4934
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: GID7
locus tag: AWJ20_4934
so part of: sequence
location: <982375..>984192
location: region:982375-984192:1
so has part: feature:982375-984192:1:exon
subclass of: SO_0000010

30037120
type: Gene
SIO_000068: ncbigene

position:982375:1
position: 982375
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:984192:1
position: 984192
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:982375-984192:1:exon

AWJ20_4934
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: GID7
locus tag: AWJ20_4934
product: glucose-induced degradation complex subunit GID7
transcript id: XM_018882040.1
SIO_010081: AWJ20_4934
subclass of: SO_0000673
so part of: AWJ20_4934
location: <982375..>984192
location: region:982375-984192:1
so has part: feature:982375-984192:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:982375-984192:1:exon

AWJ20_4934
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: GID7
locus tag: AWJ20_4934
note: Subunit of GID Complex that binds directly to central component Vid30p; GID complex is involved in proteasome-dependent catabolite inactivation of fructose-1,6-bisphosphatase; Gid7p contains six WD40 repeats; computational analysis suggests that Gid7p and Moh1p have similar functions; GO_component: GO:0034657 - GID complex [Evidence IDA] [PMID 18508925]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0045721 - negative regulation of gluconeogenesis [Evidence IMP] [PMID 12686616]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12686616]
codon start: 1
product: glucose-induced degradation complex subunit GID7
translation: MTAIPMNRTRDSNNSSSTSNNSNGNSASSTSNGNSKLASTTGIEANGNGNNQNGNSTIASSASITSTESTAATLSERDSSAKNTSGIGTEVLSPTYFGFDKKETTRLLIQSLHDLGYHDIGKSLENASGYTIESPQVVDLRNAVLSGEWDNAEQILLAGSIEVPNPSDINSMIFLIRKQRYLEILEKDDREEALWFLRNQLSPVNGNGHKEELHFLSKLAMFSLDDIKADAHWDGVNGKSRQLLLESLQEHLSPSIMIPPHRLATLLHQAKSSQLKASDYYLGDESSATSDFSLYKDYVGDRTKFPNVTTHILKDHFDEVWYLAFSNDGKYLASSSADKRVFIWDVEDNFKLHRRLEGHHKGVVFFSWSPNDKYIVSCGQDSHAIVWDVQKGEKVSQASHDEAVDSCAWSHDNRSFITGSPDKKMILWDLDGREIHTWTNIRAQSMAVTPDGNRLIVICSDMIIHVFDLRTYEMITQISVSNKILTSISVSRDSRYAVISVAPEEIHLWDLETYRLVRKYVGQLQDEFVIRSSFGGLNENFILSGSEDSHVYIWNRDNANLIEALPGHTGTVNCVQWRPGHPAMFASAGDDSTIRIWQPASRQDL
SIO_010081: AWJ20_4934
subclass of: SO_0000673
so part of: AWJ20_4934
location: 982375..984192
location: region:982375-984192:1
so has part: feature:982375-984192:1:exon

XP_018736458.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:982375-984192:1:exon

AWJ20_4935
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ALO1
locus tag: AWJ20_4935
so part of: sequence
location: complement(<984745..>986340)
location: region:984745-986340:-1
so has part: feature:984745-986340:-1:exon
subclass of: SO_0000010

30037121
type: Gene
SIO_000068: ncbigene

position:984745:-1
position: 984745
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:986340:-1
position: 986340
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:984745-986340:-1:exon

AWJ20_4935
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ALO1
locus tag: AWJ20_4935
product: D-arabinono-1,4-lactone oxidase
transcript id: XM_018882041.1
SIO_010081: AWJ20_4935
subclass of: SO_0000673
so part of: AWJ20_4935
location: complement(<984745..>986340)
location: region:984745-986340:-1
so has part: feature:984745-986340:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:984745-986340:-1:exon

AWJ20_4935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ALO1
locus tag: AWJ20_4935
inference: similar to AA sequence:KEGG_Orthology:K00107
note: D-Arabinono-1,4-lactone oxidase; catalyzes the final step in biosynthesis of dehydro-D-arabinono-1,4-lactone, which is protective against oxidative stress; GO_component: GO:0031307 - integral component of mitochondrial outer membrane [Evidence IDA] [PMID 16689936]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 10094636]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003885 - D-arabinono-1,4-lactone oxidase activity [Evidence IEA,IEA]; GO_function: GO:0003885 - D-arabinono-1,4-lactone oxidase activity [Evidence IDA] [PMID 10094636]; GO_function: GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]; GO_function: GO:0016899 - oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 10094636]; GO_process: GO:0070485 - dehydro-D-arabinono-1,4-lactone biosynthetic process [Evidence IMP] [PMID 10094636]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]
codon start: 1
product: D-arabinono-1,4-lactone oxidase
translation: MADRLAPFSFANRTHRTWAGTFRCKPQLYIQPRTAEEIRDAVVEAKRLNKTLMLTGSGHSPSTLTMSDEWIMNLDIFNKVLSIERHESGKFADVTVEAGIRIYQLTEILAAEGLAIQNLGSISEQSAAGIISTGTHGSSAYHGLVSEQIVKFTLLCSGKADPETIECSPGDNLDLFRAGLLSVGKLGIITHVTLRVVPAYNLKSRQQIVSFDRFVDELWPTVWTSSEFIRVWWYPYSDRCVLWRADKCKQEEPLREPINNFYGTTLGRFFYESLLWLAVKVYPSLTPSIERWVFKHQYGFEESINSEGNVAVQRSDLALNMDCLFSQFVNEWAMPLTEGPKVLRQLETIIKDAAKNNSFYVHAPFEVRISNTAVSGSTDTINPDNYSVPHLGTVPGNTVRPLLDGTPKLGAATTPITYDKLTLYLNATVYRPFGFDCPIDKWYRTFEDTVAAVGGKPHWAKNFLGTFDDKPASTLTDGEMRGLKPTMDSWFGDDLTLFKTLRETHDPQGTFLSGRHWAEINGFVSSVTDIV
SIO_010081: AWJ20_4935
subclass of: SO_0000673
so part of: AWJ20_4935
location: complement(984745..986340)
location: region:984745-986340:-1
so has part: feature:984745-986340:-1:exon

XP_018736459.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:984745-986340:-1:exon

AWJ20_4936
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4936
so part of: sequence
location: <986836..>988308
location: region:986836-988308:1
so has part: feature:986836-988308:1:exon
subclass of: SO_0000010

30037122
type: Gene
SIO_000068: ncbigene

position:986836:1
position: 986836
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:988308:1
position: 988308
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:986836-988308:1:exon

AWJ20_4936
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4936
product: hypothetical protein
transcript id: XM_018882042.1
SIO_010081: AWJ20_4936
subclass of: SO_0000673
so part of: AWJ20_4936
location: <986836..>988308
location: region:986836-988308:1
so has part: feature:986836-988308:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:986836-988308:1:exon

AWJ20_4936
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4936
codon start: 1
product: hypothetical protein
translation: MNRARKRRRDEPWHQLRRGTTERSGGDMRSVREERKGGSGDGSSGSSLSRHGSSNDITVRDITIDSTGNSGWQRDAVPADLPDEKDAIEKRVARARVRAAIEKSSDRENSMNTGSNADHGAVNPRETNSGNSETSPRNGVESLRSIAARSVASHSRDIRRMLLRNSNVSWELGWKLVWEWIRLMGLDSYPLFTLFLKEFGTKRDFHCHHRQTVPVADITGYRAGSKRDVFLDSRLLPSINTKHRIEYIPYGGVSGVVSLVQSISQYNLSMEIGNNIVLLDLSGLRIPRESLNDMCLSLTSLKSLAGLDVSGCGILESSNILTLWRVAMTSGAWTNLRLLCLGDSYLNSTTMSVYQTLFDTSLAYIEGPSNYTPDETKWVHGRNLTGISPRFTVNYSLAFKYRFLSSSANINEPRVRLPKATVLQEFILTRDESSPPWLSKRPSFNCRDCYIRKPTSSSPPTLPSKPASKSKLTIRKDKLRGPLTAQGFLF
SIO_010081: AWJ20_4936
subclass of: SO_0000673
so part of: AWJ20_4936
location: 986836..988308
location: region:986836-988308:1
so has part: feature:986836-988308:1:exon

XP_018736460.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:986836-988308:1:exon

AWJ20_4937
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PHO84
locus tag: AWJ20_4937
so part of: sequence
location: <994711..>996717
location: region:994711-996717:1
so has part: feature:994711-996717:1:exon
subclass of: SO_0000010

30037123
type: Gene
SIO_000068: ncbigene

position:994711:1
position: 994711
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:996717:1
position: 996717
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:994711-996717:1:exon

AWJ20_4937
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PHO84
locus tag: AWJ20_4937
product: phosphate transporter PHO84
transcript id: XM_018882043.1
SIO_010081: AWJ20_4937
subclass of: SO_0000673
so part of: AWJ20_4937
location: <994711..>996717
location: region:994711-996717:1
so has part: feature:994711-996717:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:994711-996717:1:exon

AWJ20_4937
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PHO84
locus tag: AWJ20_4937
codon start: 1
product: phosphate transporter PHO84
translation: MPDRSHHNPIPGEIPVPHGVQEYDTVDGRIINDIDDFQYTDKSEKEIFAYLLQPADAYTPEGVYWADLPFGKKVSFVTSVDSAEAKKELKTIGRMFKEDPLSPVAWYFRNCVLPGAGLGLEGYVLFSIGNVSSLFSAAWPECWGSKATVCNKNWIAAVSYLEIVGIIFGQVIVGFIGDGIGRKWGLIQDASIMFIGLIMLTASWGVTLNGWVICYAWSLFFYSVGVGGEYPMTATSGMERGTRSVFTSADDRLHRGRKVLQAFLMQGWGQFFNQVILILLLLIFHHGSGNPPYSKVAVQWTFRIAFAIPAIGTLWLVYYRAYKMPYPSKDLEAVKKKSKVTGYDVESLKLVLKYFGPRLLATTGAWFANDVFFYGNKLFQGQFIAVIAPNDKSVILGWLYNLINIGVSLAGYYLAAFLIDNKLYGRNRMMQVGFLMDFILFVIPAFHYKYYTAPENVAKFQTMYFLSSFFNQFGPNAVTFLVAAEVYPTQVRATAHGISAACGKLGALFASVVYSYISVQTRFYLVPWFGLAGMLVTFVFMPDTTGLDLREQDRRFQFIREGRDHEYHGIAVHPQHLSLWERFRGVGKNYNPELDYKQKVDELRSDWEERQKLKAAEGDNASNDEELTGDYSPDVHQYFVRTSPLLTANKQGVEDNLKLPEAATNEKL
SIO_010081: AWJ20_4937
subclass of: SO_0000673
so part of: AWJ20_4937
location: 994711..996717
location: region:994711-996717:1
so has part: feature:994711-996717:1:exon

XP_018736461.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:994711-996717:1:exon

AWJ20_4938
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CUS2
locus tag: AWJ20_4938
so part of: sequence
location: complement(<998023..>998436)
location: region:998023-998436:-1
so has part: feature:998023-998436:-1:exon
subclass of: SO_0000010

30037124
type: Gene
SIO_000068: ncbigene

position:998023:-1
position: 998023
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:998436:-1
position: 998436
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:998023-998436:-1:exon

AWJ20_4938
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CUS2
locus tag: AWJ20_4938
product: Cus2p
transcript id: XM_018882044.1
SIO_010081: AWJ20_4938
subclass of: SO_0000673
so part of: AWJ20_4938
location: complement(<998023..>998436)
location: region:998023-998436:-1
so has part: feature:998023-998436:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:998023-998436:-1:exon

AWJ20_4938
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CUS2
locus tag: AWJ20_4938
inference: similar to AA sequence:KEGG_Orthology:K13093
note: Putative checkpoint factor in transcription; binds to U2 snRNA and Prp11p; may be involved in U2 snRNA folding; contains two RNA recognition motifs (RRMs); GO_component: GO:0005686 - U2 snRNP [Evidence TAS] [PMID 11804584]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IMP,ISS] [PMID 9710584]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IGI,IPI] [PMID 9710584]
codon start: 1
product: Cus2p
translation: MDRKLADWDDDEPKAISKRWEKVIVLKNAFTLDELQDASTAFDIKQDIMEGCEDIGPVTSVTLYDLEPEGIATVKFQEKDDAVTCIEVMNGRYFGGKQLEAFPYDGKIKYRKSKKDGEDDKEQERLDKFGSWLNKGE
SIO_010081: AWJ20_4938
subclass of: SO_0000673
so part of: AWJ20_4938
location: complement(998023..998436)
location: region:998023-998436:-1
so has part: feature:998023-998436:-1:exon

XP_018736462.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:998023-998436:-1:exon

AWJ20_4939
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CUS2
locus tag: AWJ20_4939
so part of: sequence
location: complement(<998592..>999323)
location: region:998592-999323:-1
so has part: feature:998592-999323:-1:exon
subclass of: SO_0000010

30037125
type: Gene
SIO_000068: ncbigene

position:998592:-1
position: 998592
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:999323:-1
position: 999323
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:998592-999323:-1:exon

AWJ20_4939
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CUS2
locus tag: AWJ20_4939
product: Cus2p
transcript id: XM_018882045.1
SIO_010081: AWJ20_4939
subclass of: SO_0000673
so part of: AWJ20_4939
location: complement(<998592..>999323)
location: region:998592-999323:-1
so has part: feature:998592-999323:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:998592-999323:-1:exon

AWJ20_4939
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CUS2
locus tag: AWJ20_4939
inference: similar to AA sequence:KEGG_Orthology:K13093
note: Putative checkpoint factor in transcription; binds to U2 snRNA and Prp11p; may be involved in U2 snRNA folding; contains two RNA recognition motifs (RRMs); GO_component: GO:0005686 - U2 snRNP [Evidence TAS] [PMID 11804584]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IMP,ISS] [PMID 9710584]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IGI,IPI] [PMID 9710584]
codon start: 1
product: Cus2p
translation: MGHTTDPIAKVNFPPIPKGTPSDSLEWAKDPRIAYSQVTGKWIFEDVDNGDEYEFNEEVRSWVPILEEEDIKSQQQAYQPPSKRSPDREDESKHEDTSTNGSKRTKKPKLDQPSHKERKPTGIYLSNLPKDVTYEELDTTFSKYGVIAEDLNTGNKKIKIYRDDKDQPKGDALIVYFKPESVPLAIEMMDNSELRPGEPGRNPNGKIAVQLAEYKHSEDNHEKPKLNAKEKLKIQKKLQKLNE
SIO_010081: AWJ20_4939
subclass of: SO_0000673
so part of: AWJ20_4939
location: complement(998592..999323)
location: region:998592-999323:-1
so has part: feature:998592-999323:-1:exon

XP_018736463.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:998592-999323:-1:exon

AWJ20_4940
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TPO3
locus tag: AWJ20_4940
so part of: sequence
location: complement(<999602..>1001269)
location: region:999602-1001269:-1
so has part: feature:999602-1001269:-1:exon
subclass of: SO_0000010

30037127
type: Gene
SIO_000068: ncbigene

position:999602:-1
position: 999602
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1001269:-1
position: 1001269
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:999602-1001269:-1:exon

AWJ20_4940
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TPO3
locus tag: AWJ20_4940
product: Tpo3p
transcript id: XM_018882047.1
SIO_010081: AWJ20_4940
subclass of: SO_0000673
so part of: AWJ20_4940
location: complement(<999602..>1001269)
location: region:999602-1001269:-1
so has part: feature:999602-1001269:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:999602-1001269:-1:exon

AWJ20_4940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TPO3
locus tag: AWJ20_4940
note: Polyamine transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; specific for spermine; localizes to the plasma membrane; TPO3 has a paralog, TPO2, that arose from the whole genome duplication; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IMP] [PMID 11171066]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12562762]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Tpo3p
translation: MSSDNSLTEERQIGGYGDITHHYDLTKKISRENNPMEDNDVDPMYEPPHNYDILRVKSHPDPTHQELNADDPWKYPVDAETGFRIVTFVPDDKDDPRTWSKTRKWFITLALGVVCFTVAFSSAAVTGAMVGPNAPGATFNVSDEVVILTVTLFVIGFGVGPLLFAPLSEEVGRRPIYVVTLALAVIFIIPCAVAQNIGTLLVGRFIDGIFFSAPLTIIGGSLADMWVNSERGVAMAIFSAAPFLGPAAGPLVGGFVGDNAGWRWIYYVMLIFAFCVYVFSTISIPETHHNTLLAKRAKKLIKLTGDTRYKTAKQLVPKSFAETAKVTLQRPPQLLCEIIVFLVTIYMAVLYGLLYMFFFAYPVIFMEGKGWSASLTGLTFIPIIVGVLISTAISPYVNSDYVRRANAYLDKGEVPPAELRLIPMMVGCWFVPIGLFIYAWTSYPTISWVGPTLAGLPCGFGFILIYNSATNYIVDSYQHYAASALAAKTFVRSFWGASVPLFTIQMYHRLGYEWAGSLLAFISLACCIIPYLFFFYGAKIRERSKYAYTPEVTKN
SIO_010081: AWJ20_4940
subclass of: SO_0000673
so part of: AWJ20_4940
location: complement(999602..1001269)
location: region:999602-1001269:-1
so has part: feature:999602-1001269:-1:exon

XP_018736464.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:999602-1001269:-1:exon

AWJ20_4941
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4941
so part of: sequence
location: complement(<1003096..>1003914)
location: region:1003096-1003914:-1
so has part: feature:1003096-1003914:-1:exon
subclass of: SO_0000010

30037128
type: Gene
SIO_000068: ncbigene

position:1003096:-1
position: 1003096
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1003914:-1
position: 1003914
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1003096-1003914:-1:exon

AWJ20_4941
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4941
product: hydrophobic surface binding protein A
transcript id: XM_018882048.1
SIO_010081: AWJ20_4941
subclass of: SO_0000673
so part of: AWJ20_4941
location: complement(<1003096..>1003914)
location: region:1003096-1003914:-1
so has part: feature:1003096-1003914:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1003096-1003914:-1:exon

AWJ20_4941
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4941
codon start: 1
product: hydrophobic surface binding protein A
translation: MKFTTLVLTSLLSSYALADVGSLVSAIKQLQTDVETTDKDVKGFDKSQGINGALSIQSTEGNIEKDVDSVTSEVNGLGDLSDSDVSQIADAIKSVSSAVTGLLSDLTSKASDLISVGTQSIVAGDLSSLSGKTYELESAAYKKVPCANAAEIASDFAQINSGFDAAFKAYSAQASGSPPAAPSGCASSAAAGGSSAAAATSAAPASSAAATSAAAPASSAAAESSAPASTSAAAPATESASSSAPAVAEGGAAGLKAGALGAAAAGVAALLL
SIO_010081: AWJ20_4941
subclass of: SO_0000673
so part of: AWJ20_4941
location: complement(1003096..1003914)
location: region:1003096-1003914:-1
so has part: feature:1003096-1003914:-1:exon

XP_018736465.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1003096-1003914:-1:exon

AWJ20_4942
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4942
so part of: sequence
location: complement(<1010664..>1012022)
location: region:1010664-1012022:-1
so has part: feature:1010664-1012022:-1:exon
subclass of: SO_0000010

30037129
type: Gene
SIO_000068: ncbigene

position:1010664:-1
position: 1010664
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1012022:-1
position: 1012022
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1010664-1012022:-1:exon

AWJ20_4942
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4942
product: hypothetical protein
transcript id: XM_018882049.1
SIO_010081: AWJ20_4942
subclass of: SO_0000673
so part of: AWJ20_4942
location: complement(<1010664..>1012022)
location: region:1010664-1012022:-1
so has part: feature:1010664-1012022:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1010664-1012022:-1:exon

AWJ20_4942
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4942
codon start: 1
product: hypothetical protein
translation: MATTGASDFSIIALLTPPGAAPGTGLSGVIAGANTMFAAAGGAEGLGPVIIDQVIGELQGLFGDYPNSTDIAPSAIFLAIFAILGAAHLYIFLKDYSRGHRFWISFGLFIYCVFRVIGFACRISWAKDVLRINTGIVSVVFSQVSVLYMNVLCMILGHRIFTWRHPETGAASWFNAIISVIYLLICGVVAMAIVGQAIPYLYFLSPENWARYQKVVKAAAILNLLYALAGLALVTLAYTFKPGSIDHRLWRMPKMQAKDFLPPTIQPTWIESTGLFYFPRRGSQIPILKGDRLEKAIRVIPSREAPASGLTNSHSPDHTSGPSIRTAVIVVVSLSLILTMNVAFRVAAVFTVKPRGGGTPGSHLNAWVFHNYVFYIWYGAFEVIVNLILLLSRVDLRFYIPDMARKRRADEPLPNHQYENDEVKLTASNNEVSDVENHPQYDGQYNTHNLAE
SIO_010081: AWJ20_4942
subclass of: SO_0000673
so part of: AWJ20_4942
location: complement(1010664..1012022)
location: region:1010664-1012022:-1
so has part: feature:1010664-1012022:-1:exon

XP_018736466.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1010664-1012022:-1:exon

AWJ20_4943
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: STE11
locus tag: AWJ20_4943
so part of: sequence
location: complement(<1016263..>1019097)
location: region:1016263-1019097:-1
so has part: feature:1016263-1019097:-1:exon
subclass of: SO_0000010

30037130
type: Gene
SIO_000068: ncbigene

position:1016263:-1
position: 1016263
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1019097:-1
position: 1019097
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1016263-1019097:-1:exon

AWJ20_4943
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: STE11
locus tag: AWJ20_4943
product: mitogen-activated protein kinase kinase kinase STE11
transcript id: XM_018882050.1
SIO_010081: AWJ20_4943
subclass of: SO_0000673
so part of: AWJ20_4943
location: complement(<1016263..>1019097)
location: region:1016263-1019097:-1
so has part: feature:1016263-1019097:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1016263-1019097:-1:exon

AWJ20_4943
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: STE11
locus tag: AWJ20_4943
inference: similar to AA sequence:KEGG_Orthology:K11228
codon start: 1
product: mitogen-activated protein kinase kinase kinase STE11
translation: MCLSFGNFPEPLLAGYIVQVLNGLRFLHEQGTIHRDIKGANILTDKEGKIKLADFGVATQSVVGTLSRDKSVVGTPYWMAPEVIEVNGATAASDIWSLGCTIVELLTGKPPNYHLDPMSAMYAIVSKEIPLPEGISSELKDFLLECFQKDPNLRVSAKALQKHPWLKKHSPSMASSNTKYEEAIKTVKIHNSPKRATSTTLGDDIFSPVPRAEGGKRQSPVRNSLFNVSPAKRRTSLVQKGDPPLAKNLAKQFSENWHDDDDEFADLEGDLNADRLQAVLSSKFASRQPPKPDFKLESEPMQRQTSQTSQVSLESQLSDISLTDESRVSQSNGKSRSSDIHGYAETNENDYTNDFEDVGTFDTMALSPFIKESPDIRGQSTKESPPSVQEPPPSAAVSMESTTTADTDNPFLKIESEDVVEADPELRMAHTRLEQVISTMENASNSADLKNTTEELLDILRNFPETRTTFFKSSGLSLAYTVLRDSTSKTVVVNIVHLLLVIAKDEANANALDDFWLLGGMQVVIRLLSRRKIFQVRSGAATLIEQCCNDSLLSLQSFMACGGLKYLYELLEEDCQKERVLVRVALTMLKEILQTITSSVLRKSIYKNLCEDGVMNSLVSIPGPNNASKDLVDLTLNLLLSMSQDSIVRANIGLNYGRKLLSKYDKVQEQKDKLSILKFVKNISQEQSHLEPNQEVSIISLLVTILQQATDKASTAIKKDVLNQAVPALFNICRLNGSRQEKAAEFGLVPILTNILQDTSIQSRDNVRQLALQMLCDMTHAGKLSREELNRNNCLELLLTYVPDPYWQRDIYDALGAWLRGDINIQHKLATPPAVDTLLDGLKTNINGISYGDLMNSFGSMIRLSPLLCKSMPLSKFYSIIRGGLLSTDPLVIVNVLRVLNIVVETTGATVLDAKLRDQLKKHAKTNNSKLARQLASDLLGPGV
SIO_010081: AWJ20_4943
subclass of: SO_0000673
so part of: AWJ20_4943
location: complement(1016263..1019097)
location: region:1016263-1019097:-1
so has part: feature:1016263-1019097:-1:exon

XP_018736467.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1016263-1019097:-1:exon

AWJ20_4944
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RAD16
locus tag: AWJ20_4944
so part of: sequence
location: <1023031..>1025604
location: region:1023031-1025604:1
so has part: feature:1023031-1025604:1:exon
subclass of: SO_0000010

30037131
type: Gene
SIO_000068: ncbigene

position:1023031:1
position: 1023031
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1025604:1
position: 1025604
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1023031-1025604:1:exon

AWJ20_4944
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RAD16
locus tag: AWJ20_4944
product: DNA repair protein RAD16
transcript id: XM_018882051.1
SIO_010081: AWJ20_4944
subclass of: SO_0000673
so part of: AWJ20_4944
location: <1023031..>1025604
location: region:1023031-1025604:1
so has part: feature:1023031-1025604:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1023031-1025604:1:exon

AWJ20_4944
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RAD16
locus tag: AWJ20_4944
inference: similar to AA sequence:KEGG_Orthology:K15083
note: Nucleotide excision repair (NER) protein; binds damaged DNA during NER; binds DNA in an ATP-dependent manner (with Rad7p) during NER; required for NER of non-transcribed chromatin; subunit of Nucleotide Excision Repair Factor 4 (NEF4) and the Elongin-Cullin-Socs (ECS) ligase complex; GO_component: GO:0031463 - Cul3-RING ubiquitin ligase complex [Evidence IDA] [PMID 16675952]; GO_component: GO:0000113 - nucleotide-excision repair factor 4 complex [Evidence IDA] [PMID 9497356]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IDA] [PMID 9497356]; GO_function: GO:0003684 - damaged DNA binding [Evidence IDA] [PMID 9497356]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 16675952]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0000715 - nucleotide-excision repair, DNA damage recognition [Evidence IDA,IMP] [PMID 15177043]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 16675952]
codon start: 1
product: DNA repair protein RAD16
translation: MSSGSALSTPPSSIEDDEDWLSMPMSSRQAADLLGVVDSNNGSGTKRKRPAAKKKSPRQVARDALNSAVNGEEFRLTPEPTAKKTPRKPRMKVASSSEDADFEEDNSEVTRPRSARSRRKPRIVEASDNDNDDEDDDDEEYKEKSDNSADSEEEVVKEEEIDELQGEDDNVETAAVVPAPRRRQRRGGKREPRAPKLPRHVVMYNRLNEGLHEFHPELKTIFEDMKNRPEIKPEQIPQPEGMACELLPFQREGLNWLIKQEQGMYKGGILADEMGMGKTIQTVALLMTDPSDAPPTLVVAPTVALMQWKHEIDLHTQGKLSVLLYHGQNRSSDESVIQQHRIVLTTYAVLESVFRRQVLGFTRKGSEKKVRQKSPLHQIHWNRIVLDEAHNIKDRQSNTARAVFNMKANYRLCLSGTPLQNRIGEIYSLMRFLGIEPFSKYYCSKCDCESHTWNFGSSYHCEICNHVVMHHVNFFNHSLLKHIQRYGFKDEGGVAMGRLRSVLSQIMLRRTKMERADDLGLPPRVVEIRRDYFNEEEKDLYSSVYSESNRKFNTYVAANVVLNNYANIFTLITRMRQISDHPDLVLRRTIGNSEDADAINRLVCKICDDEAEEAIQSKCHHTFCRLCIKEYVEGWTGDQSELECPVCHLQLTIDLTAPAIQADESLVKKGSIVNRINMTGGWRSSTKIEALVEELYKLRSDRQTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMSPTQRDNIIRHFMETPSVEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQHRPVKITRLVIEDSIESRIIELQEKKAQMIQATIESDDGAMNKLTPADMQFLFQN
SIO_010081: AWJ20_4944
subclass of: SO_0000673
so part of: AWJ20_4944
location: 1023031..1025604
location: region:1023031-1025604:1
so has part: feature:1023031-1025604:1:exon

XP_018736468.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1023031-1025604:1:exon

AWJ20_4945
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4945
so part of: sequence
location: <1025830..>1025916
location: region:1025830-1025916:1
so has part: feature:1025830-1025916:1:exon
subclass of: SO_0000663

30037132
type: Gene
SIO_000068: ncbigene

position:1025830:1
position: 1025830
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:1025916:1
position: 1025916
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1025830-1025916:1:exon

AWJ20_4945
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_4945
product: tRNA-Thr
SIO_010081: AWJ20_4945
subclass of: SO_0000673
so part of: AWJ20_4945
location: <1025830..>1025916
location: region:1025830-1025916:1
so has part: feature:1025830-1025916:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1025830-1025916:1:exon

AWJ20_4946
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SOR1
locus tag: AWJ20_4946
so part of: sequence
location: complement(<1026316..>1027365)
location: region:1026316-1027365:-1
so has part: feature:1026316-1027365:-1:exon
subclass of: SO_0000010

30037133
type: Gene
SIO_000068: ncbigene

position:1026316:-1
position: 1026316
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1027365:-1
position: 1027365
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1026316-1027365:-1:exon

AWJ20_4946
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SOR1
locus tag: AWJ20_4946
product: L-iditol 2-dehydrogenase SOR1
transcript id: XM_018882052.1
SIO_010081: AWJ20_4946
subclass of: SO_0000673
so part of: AWJ20_4946
location: complement(<1026316..>1027365)
location: region:1026316-1027365:-1
so has part: feature:1026316-1027365:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1026316-1027365:-1:exon

AWJ20_4946
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SOR1
locus tag: AWJ20_4946
inference: similar to AA sequence:KEGG_Orthology:K05351
note: Sorbitol dehydrogenase; expression is induced in the presence of sorbitol or xylose; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0003939 - L-iditol 2-dehydrogenase activity [Evidence IEA]; GO_function: GO:0003939 - L-iditol 2-dehydrogenase activity [Evidence IDA,ISS] [PMID 8125328]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0019318 - hexose metabolic process [Evidence IEP] [PMID 8125328]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]
codon start: 1
product: L-iditol 2-dehydrogenase SOR1
translation: MSNPSFVLQKVNEVSFEDRPVPEIKDPHYVKIAVKKTGICGSDVHYYTHGAIGDFVVKAPMVLGHESAGVIVEVGSEVKNLKVGDRVAMEPGVPSRYSDEYKSGRYNLCPCMAFAATPPYDGTLAKYYLLPEDYCVKLPDHVSLDEGALVEPLAVGVHSSKLADVRPGSKVAVFGAGPVGLLITAVASAFGASSVTVIDIVQNRLDLAKELGATHTVLASIKDTSDETAKKVVAATGAQPDIVLDASGAESSINAAISAIKPGGTYVQVGMGKPNVNFPIANVIGKELTIKGSFRYGYGDYPLAVELISSGKVNVKKLISHTVKFEEAKEAFELVMSGKAVKVIIDGPQ
SIO_010081: AWJ20_4946
subclass of: SO_0000673
so part of: AWJ20_4946
location: complement(1026316..1027365)
location: region:1026316-1027365:-1
so has part: feature:1026316-1027365:-1:exon

XP_018736469.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1026316-1027365:-1:exon

AWJ20_4947
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: LYP1
locus tag: AWJ20_4947
so part of: sequence
location: <1030449..>1032098
location: region:1030449-1032098:1
so has part: feature:1030449-1032098:1:exon
subclass of: SO_0000010

30037134
type: Gene
SIO_000068: ncbigene

position:1030449:1
position: 1030449
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1032098:1
position: 1032098
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1030449-1032098:1:exon

AWJ20_4947
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: LYP1
locus tag: AWJ20_4947
product: lysine permease
transcript id: XM_018882053.1
SIO_010081: AWJ20_4947
subclass of: SO_0000673
so part of: AWJ20_4947
location: <1030449..>1032098
location: region:1030449-1032098:1
so has part: feature:1030449-1032098:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1030449-1032098:1:exon

AWJ20_4947
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: LYP1
locus tag: AWJ20_4947
inference: similar to AA sequence:KEGG_Orthology:K03293
codon start: 1
product: lysine permease
translation: MASTSVNPQPSFGSEIGTTDSKNKNGLSNLSERSFGEPEMGYIVKSEDRLSRSLSARQVQMIAIAGVIGTGLFLGTGKSLAEAGPASLLIAYFIIGIVVYLTMNALGEMATYVPVAGSFCTYATRYVDEAFGFALLWNYWFNDAVSTASDLTALQLVFAYWTDFPSWIIALIFWVFLICANLIHVKVYGELEYWLALLKVVTIVIFMIISIVVNAGANTQHEYLGFHYWYIGDAPFVNNFKGFASVFVTASFAYGGTESIAITAGETKNPSRVMPRVVKTVFWRILFFYVLTVLFIGINVPYNYPNLSTGGTALSPFTITFQLVGSKAAGSFMNAVIVTSVISAGNHALFAGTRLLYTLGVEGFAPKIFTVLTPHKVPYVALLATASISGLCFGASFIGTGTLWAWLQNLVGVSNQLAWLSIGVTAIRFRQALNKQGKTHLLKFKNWTYPWGPWIVVVGVTVIILVQGWSAFAPWSVSSFFSYYIELFIMPVMYIFWKIVKRTKFVKLEDMDLDTDRYVETEEDLAEMEYEDSLTGWRRVVNYLKGFVV
SIO_010081: AWJ20_4947
subclass of: SO_0000673
so part of: AWJ20_4947
location: 1030449..1032098
location: region:1030449-1032098:1
so has part: feature:1030449-1032098:1:exon

XP_018736470.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1030449-1032098:1:exon

AWJ20_4948
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CHS3
locus tag: AWJ20_4948
so part of: sequence
location: complement(<1032380..>1035931)
location: region:1032380-1035931:-1
so has part: feature:1032380-1035931:-1:exon
subclass of: SO_0000010

30037135
type: Gene
SIO_000068: ncbigene

position:1032380:-1
position: 1032380
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1035931:-1
position: 1035931
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1032380-1035931:-1:exon

AWJ20_4948
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CHS3
locus tag: AWJ20_4948
product: chitin synthase CHS3
transcript id: XM_018882054.1
SIO_010081: AWJ20_4948
subclass of: SO_0000673
so part of: AWJ20_4948
location: complement(<1032380..>1035931)
location: region:1032380-1035931:-1
so has part: feature:1032380-1035931:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1032380-1035931:-1:exon

AWJ20_4948
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CHS3
locus tag: AWJ20_4948
inference: similar to AA sequence:KEGG_Orthology:K00698
note: Chitin synthase III; catalyzes the transfer of N-acetylglucosamine (GlcNAc) to chitin; required for synthesis of the majority of cell wall chitin, the chitin ring during bud emergence, and spore wall chitosan; contains overlapping di-leucine and di-acidic signals that mediate, respectively, intracellular trafficking by AP-1 and trafficking to plasma membrane by exomer complex; requires AP-3 complex for its intracellular retention; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 15470103]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 8909536]; GO_component: GO:0045009 - chitosome [Evidence IDA] [PMID 8970154]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9008706]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 15470103]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 9008706]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 15755916]; GO_function: GO:0004100 - chitin synthase activity [Evidence IEA]; GO_function: GO:0004100 - chitin synthase activity [Evidence IMP] [PMID 9760183]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IMP] [PMID 1293886]; GO_process: GO:0034221 - fungal-type cell wall chitin biosynthetic process [Evidence TAS] [PMID 7565410]
codon start: 1
product: chitin synthase CHS3
translation: MTEKKDVASSEHKAEVEGNSSLKSGSKSKTSGPGHCKAVLSSGATAIAIAKARATAKARARARSKLRTNSRSVSTTNFPTDYYYHLWPVSSVASSVSHNTVLTGDLRPSGEADRTAETRSEDISDGISEGISMGISEGKSKGTSESLAEGSLDTIDGVGERKEENQISKIQAMPVSADAVTGDKPASTGSSTNKSAKDPTEITKLSFSAPEMTANSKSTAGPRHAPGYPSYFVERFETASAISQPPGPKMSINSQPLNKRLIKSKRAELEFNVGPCSESSAHIIWTGYCNLISCFVRPIMLRWCGIKSHQQQVAWREKIGLFSVIVLITCTVGVFTFGFNEMVCGHNSNVPRIHFSSIPPDTVVIHGRLFNMTTFNHNPKFLRPAPWSSNSFTLTGVSSIPIDASLLFQNVNGHCRPHIKPSRSSQVAHDSDLRVPWYLPCKLLTINDNRIVDFYVPTISSSAYKQLSFIKKYSPEACHTSKYSRERLYEMNSVSDIYYTWKDIDSSPRNIAVLFNDVLDLDRLKLLPPEDWELSKALSQFVSLDASQGLPVSDISKYFVADPSLFKLAKCLTEIAKVGVIDVESVGCISSQIVLYVALMFIFSIVLIKFTFALYFEWFVSWRMGIKGVSSTSWVFWFIWSLFRAKEKIGTGENSGKSDISLSNSERQYSLKSSESKSSSSLSNSSVSQTPMETRSESTAFSQMHMFPSTCESLDDQMYVVCLVTVYSESEDGLRLSLDSLASTDYPDCRKLLLVVCDGLVTGANNDRMTSEIALSLMEDVAVPFHEVPDLSYISVGYGKRRINMAQVHCGYYAHVPSDSSKPKRRVPMICVVKCGLEEERQTSSKPGNRGKRDSQLILMGFFQKLCMGDRKTDLENEIHYCIEHVYGINPQLFEAILMVDADTKVYEDSLGHMVATLVADSTVIGLCGETKIANKWESWITMIQVFEYFISHHLTKSFESVFGGVTCLPGCFSMYRIKAPPKSGHVLLLLVSPAVVSRYSDNIVNTVHRKNLLLLGEDRYLTTLMLKAFPVHKLIFVPQAKCKTIVPSKFKGLLDQRRRWINSTIHNLLELLLVQELCGVFCFSMQFVVLIDLIGTVTLPAALVFTVYLLIACIYRHPPPVVPLMLLALILGIPGVLILVTAHQWIYVLWMLIYLISLPVWNFILPLNACKLTAWVLRHNRD
SIO_010081: AWJ20_4948
subclass of: SO_0000673
so part of: AWJ20_4948
location: complement(1032380..1035931)
location: region:1032380-1035931:-1
so has part: feature:1032380-1035931:-1:exon

XP_018736471.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1032380-1035931:-1:exon

AWJ20_4949
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: URH1
locus tag: AWJ20_4949
so part of: sequence
location: <1037460..>1038506
location: region:1037460-1038506:1
so has part: feature:1037460-1038506:1:exon
subclass of: SO_0000010

30037136
type: Gene
SIO_000068: ncbigene

position:1037460:1
position: 1037460
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1038506:1
position: 1038506
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1037460-1038506:1:exon

AWJ20_4949
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: URH1
locus tag: AWJ20_4949
product: trifunctional uridine nucleosidase/nicotinamide riboside hydrolase/nicotinic acid riboside hydrolase
transcript id: XM_018882055.1
SIO_010081: AWJ20_4949
subclass of: SO_0000673
so part of: AWJ20_4949
location: <1037460..>1038506
location: region:1037460-1038506:1
so has part: feature:1037460-1038506:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1037460-1038506:1:exon

AWJ20_4949
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: URH1
locus tag: AWJ20_4949
inference: similar to AA sequence:KEGG_Orthology:K01240
note: Uridine nucleosidase (uridine-cytidine N-ribohydrolase); cleaves N-glycosidic bonds in nucleosides; involved in the pyrimidine salvage and nicotinamide riboside salvage pathways; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds [Evidence IEA]; GO_function: GO:0070635 - nicotinamide riboside hydrolase activity [Evidence IDA] [PMID 19001417]; GO_function: GO:0070636 - nicotinic acid riboside hydrolase activity [Evidence IDA] [PMID 19001417]; GO_function: GO:0050263 - ribosylpyrimidine nucleosidase activity [Evidence IDA] [PMID 11872485]; GO_function: GO:0050263 - ribosylpyrimidine nucleosidase activity [Evidence IDA] [PMID 12111094]; GO_function: GO:0045437 - uridine nucleosidase activity [Evidence IEA]; GO_function: GO:0045437 - uridine nucleosidase activity [Evidence IDA] [PMID 19001417]; GO_process: GO:0034356 - NAD biosynthesis via nicotinamide riboside salvage pathway [Evidence IGI] [PMID 19001417]; GO_process: GO:0006216 - cytidine catabolic process [Evidence IMP] [PMID 23670538]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0019358 - nicotinate nucleotide salvage [Evidence IGI] [PMID 17482543]; GO_process: GO:0046135 - pyrimidine nucleoside catabolic process [Evidence IDA] [PMID 11872485]; GO_process: GO:0046135 - pyrimidine nucleoside catabolic process [Evidence IDA] [PMID 12111094]; GO_process: GO:0008655 - pyrimidine-containing compound salvage [Evidence IMP] [PMID 11872485]; GO_process: GO:0006218 - uridine catabolic process [Evidence IMP] [PMID 23670538]
codon start: 1
product: trifunctional uridine nucleosidase/nicotinamide riboside hydrolase/nicotinic acid riboside hydrolase
translation: MSLILPKIPLWIDCDPGHDDAIGLLLGSGLDQYHLVGVSTVHGNASLGNTTSNAISILTAFKRLDVNVYPGAEKPLVRKLNVADSIHGRSGLDGTAFLPMPSFDAQPDHTAVAAMAKAIETYPGTLAIAALGPLTNIALLAMNYPDLLPSLRLLSIMGGGLGLGNWTKFAEFNIWCDAHAAQIVFSDTTLIPKTLLVPLNLTHQAIATDEILEQIQKSRQLDRRSVLRQMLYELMIYFAGTYKKKFGFKNGPPVHDAVAVAAILPFYSDNSTERSEHSNDPPAADLDLRFARYQVHVVEEGPQEGMLVFEPDSDNGIMIAQEMNFTEFWRLVLDAVDNVESSTSLLVS
SIO_010081: AWJ20_4949
subclass of: SO_0000673
so part of: AWJ20_4949
location: 1037460..1038506
location: region:1037460-1038506:1
so has part: feature:1037460-1038506:1:exon

XP_018736472.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1037460-1038506:1:exon

AWJ20_4950
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: GAL11
locus tag: AWJ20_4950
so part of: sequence
location: complement(<1038815..>1043804)
location: region:1038815-1043804:-1
so has part: feature:1038815-1043804:-1:exon
subclass of: SO_0000010

30037138
type: Gene
SIO_000068: ncbigene

position:1038815:-1
position: 1038815
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1043804:-1
position: 1043804
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1038815-1043804:-1:exon

AWJ20_4950
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: GAL11
locus tag: AWJ20_4950
product: Gal11p
transcript id: XM_018882057.1
SIO_010081: AWJ20_4950
subclass of: SO_0000673
so part of: AWJ20_4950
location: complement(join(<1038815..1043134,1043463..1043527,1043699..>1043804))
location: region:1038815-1043804:-1
so has part: feature:1043699-1043804:-1:exon
so has part: feature:1043463-1043527:-1:exon
so has part: feature:1038815-1043134:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1043699-1043804:-1:exon

position:1043699:-1
position: 1043699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1043463-1043527:-1:exon

position:1043463:-1
position: 1043463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1043527:-1
position: 1043527
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1038815-1043134:-1:exon

position:1043134:-1
position: 1043134
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

AWJ20_4950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: GAL11
locus tag: AWJ20_4950
note: Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; affects transcription by acting as target of activators and repressors; forms part of the tail domain of mediator; GO_component: GO:0070847 - core mediator complex [Evidence IDA] [PMID 9891034]; GO_component: GO:0016592 - mediator complex [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IDA] [PMID 20308326]; GO_function: GO:0001128 - RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly [Evidence IDA] [PMID 8378310]; GO_function: GO:0001104 - RNA polymerase II transcription cofactor activity [Evidence IEA]; GO_function: GO:0001135 - RNA polymerase II transcription factor recruiting transcription factor activity [Evidence IMP] [PMID 15254252]; GO_function: GO:0001088 - TFIIE-class binding transcription factor activity [Evidence IDA] [PMID 8790357]; GO_function: GO:0001095 - TFIIE-class transcription factor binding [Evidence IDA] [PMID 8790357]; GO_function: GO:0001097 - TFIIH-class transcription factor binding [Evidence IDA] [PMID 10973956]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IDA] [PMID 12482986]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11470794]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 8187178]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9891034]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]
codon start: 1
product: Gal11p
translation: MDFNRTGMTFNGMAGAGNNQGQAQAPGQSSNTTQPVGRWGSPVGFFGVVVKVLTECRQQQQQQQPNQSQMDPSGLLGMLPNQGAASSQFMSGAGGAGANAGAGANDTNNFNIQMMRNAAATAGGGAGAGATGMEMTPQMQAAFKQFIQQQQQQQQQQQQQQQNQGQNQGQNPTAQQLQQQFQQQQQQKNGQFQQHKLQGQVQNALNSGANVNSAAAQRTQQQQQQFFRQQQQYNQQQQQQQQQQQQQGQGQQQQQPQQQQQLQNMYQTLRGANGGGPGQVQGQVPQNQNQGQLPTTTGPGANPLAMTREQQFQFLAMQRQQQQQQQQAQAQAQAQAQAQQNQNLNRSPQVNIGNGQTVNPMTQQNIAGAASAGAGIPGAGLGVNGGGGAATGVAPNTGAPPNAVNAAAILGPNAMKTAEIPQALLNRIPGLPPNVNTWLQITELLRNGQLPKSIMPEIRYVHGMHQKWLIHVKNKQLQAQAAAANGGAGAGPAGQRQIPGATTTGVPSGTGLGATAANGNPAAAGAGGQMGLGANQQLSTADAMMSQLGQLNRNYPGQPSSQTLGMQNPANAAAVAANQAQLRKTELQQQQLLQTQPQQNQGQQQQQQQAQQQQPSLQQQQYFLAAQAQARAARAKNSVASNVTNAAKPAMINAQQSPNQMFANLPKAAGAATSSGPGGSVGSVAGSGATGAGNQFQQWDPNNANFNRPQVSPQMTQMSPQQHQQQLFQNQLDFSGGAAGVGNNAGGATGVAGTVVPNAPAPVLGPGVAPGLAVAGGATGAPQQRAQMPQQRDADRMKLRQIFEEAANIPIRLQNFTDTLSAEEKRQVAEQIKLMIHMYQKIDQLVPLFYFITKNENATRRLIQLKFMYKEQMEALQKGIYMTSPQILEKTKLEINRYFFFVRDNLQNPQRQQGLAQRQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQLQKGLIPGQIGTQLPGQVQAPGAGAGGAGAGGLMNQIPGQANASAAANSMDPQQMFVAQNFGGSMNANLQQQLPQQSVDVNQFAQGNLMNQQNNLGPAGLQQQQHLQPQLQQQQQQQHSFVNQPVNQSPQMTKKELAAAARKKQASTATAATTGAPVTTTMGPTGPGAAVAGANAGNYQAPGAVHTPSGVPAYVKPGLTQDQLKLPGPGRKRKLPPGSSQTTALSPEEVKSGNTPKLSPASLPRGRSSSTGEPSLKKEKLDPNSLTPQQKNALKAMQKKKELADSDPVAYFLTSLGEVLDIPEEDVVNGISKSQNGGTTPSGTGVSATGPNNGPGSNEMKKLPTYLGRTSTSGPSGGAGGGVTPNALLRTPLPFSAAKTPGAVAGGSGLTGGSTIKPGSTNDHLTGSSESGTLKTSSSPNTGLAPAWTGNVQAVAIRTAFQSIEAVKIGDMPFLASPKEDNNNNTTATTSSSDSSHTSGDSVSSIDATAVDEKEPVVLPIDGLDDGKQLKFDGWDDLSGVNIWDYDDALLSLGKDDATLRKEFWTVST
SIO_010081: AWJ20_4950
subclass of: SO_0000673
so part of: AWJ20_4950
location: complement(join(1038815..1043134,1043463..1043527,1043699..1043804))
location: region:1038815-1043804:-1
so has part: feature:1043699-1043804:-1:exon
so has part: feature:1043463-1043527:-1:exon
so has part: feature:1038815-1043134:-1:exon

XP_018736473.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1043699-1043804:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1043463-1043527:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1038815-1043134:-1:exon

AWJ20_4951
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: YVC1
locus tag: AWJ20_4951
so part of: sequence
location: complement(<1048115..>1050901)
location: region:1048115-1050901:-1
so has part: feature:1048115-1050901:-1:exon
subclass of: SO_0000010

30037139
type: Gene
SIO_000068: ncbigene

position:1048115:-1
position: 1048115
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1050901:-1
position: 1050901
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1048115-1050901:-1:exon

AWJ20_4951
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: YVC1
locus tag: AWJ20_4951
product: Yvc1p
transcript id: XM_018882058.1
SIO_010081: AWJ20_4951
subclass of: SO_0000673
so part of: AWJ20_4951
location: complement(<1048115..>1050901)
location: region:1048115-1050901:-1
so has part: feature:1048115-1050901:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1048115-1050901:-1:exon

AWJ20_4951
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: YVC1
locus tag: AWJ20_4951
note: Vacuolar cation channel; mediates release of Ca(2+) from the vacuole in response to hyperosmotic shock; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 11427713]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 11781332]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 20035756]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005227 - calcium activated cation channel activity [Evidence IDA] [PMID 1700419]; GO_function: GO:0005262 - calcium channel activity [Evidence IEA]; GO_function: GO:0005262 - calcium channel activity [Evidence IDA] [PMID 11781332]; GO_function: GO:0005216 - ion channel activity [Evidence IEA]; GO_function: GO:0005267 - potassium channel activity [Evidence IDA] [PMID 1700419]; GO_function: GO:0005272 - sodium channel activity [Evidence IDA] [PMID 1700419]; GO_function: GO:0005244 - voltage-gated ion channel activity [Evidence IDA] [PMID 1700419]; GO_process: GO:0070588 - calcium ion transmembrane transport [Evidence IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IEA]; GO_process: GO:0030003 - cellular cation homeostasis [Evidence IDA,IMP] [PMID 11427713]; GO_process: GO:0030003 - cellular cation homeostasis [Evidence IDA,IMP] [PMID 11781332]; GO_process: GO:0006811 - ion transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Yvc1p
translation: MDTEETTLLLPRFQPSALDSIPIYNIVLDIYDLISARVDTALKYDQLRSPQVHSFLIKPLVADLRDGLCAGTLYGLMANSIQFTKESSSYAAMAGVMATRAMICEIVAIKLLKDFDEDDLMNALTYDFYPLARGMPENSSTSQSTQSQLIPRWQRLSTLELAIKAEAKRFLAHPVVIQVLEEIWNGSIMFQTSMHKLHRVKFANEEEVLASQFGRRGAGIRYNYSDASILKLSRLRVPRYRHLLNLASFCVLLGLYLMVLSSHSMKISTQEIVFALWSLGFILDEIVGFTDVGFTLYILSLWNLFDLMILLQLIGYACCRINAIRLNATGQIDDAKKMLTLSYDILATVAIFLFPRLFSIFDNNESFSRMVIAVRKMSIDLAISWLVIVMLSSGFWIAFTLAFARNVFSSNQVAFDLMRILFGFTPVVWENWKYYSPIGRTILLFYLFITHFVVMTLLFAVLSNSFSEIVANSREEHQYLCAVNTISMIKSESSTLFSYSPPLNLIEWLVRPFFYILPLRQFLILNRTLVKITHFPVLYTIFIYERLYLRLVQIREKVKKDSQNQYRKKQEERLKALVTQLSSADDEIRSGSATPRKTRKKGKPVSTPVPVPGAVSHTEAVKKHQLMSKKISKYDLLDEVFKRPYKGTIKVRPKKPKIDLDVDINDSISRPQRNRDMSRLFHSRAGSSWTSTRPPGTEIYSDPEDTTARPYYESDAIDDEEWPGSYIPNTFERHLSGNSSIVRRLNDRTSPYLLPTVPSSTVLNKFHNEDNSAQNTRRRLPITSRGRLFSSTSSLFRQDSTMLGISPTRSTSSILRRANIHGAVRNRKWGPDHVSDHGKVKRSTNHDDEDNDDDDDYIVAKSDADVEDEPDQDDEDDRDDGEPTSLAAFNANPVDLWQMQEQIMNRIDSLEGLFKNIDKKLSQIASQN
SIO_010081: AWJ20_4951
subclass of: SO_0000673
so part of: AWJ20_4951
location: complement(1048115..1050901)
location: region:1048115-1050901:-1
so has part: feature:1048115-1050901:-1:exon

XP_018736474.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1048115-1050901:-1:exon

AWJ20_4952
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SPS19
locus tag: AWJ20_4952
so part of: sequence
location: <1052006..>1052797
location: region:1052006-1052797:1
so has part: feature:1052006-1052797:1:exon
subclass of: SO_0000010

30037140
type: Gene
SIO_000068: ncbigene

position:1052006:1
position: 1052006
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1052797:1
position: 1052797
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1052006-1052797:1:exon

AWJ20_4952
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SPS19
locus tag: AWJ20_4952
product: Sps19p
transcript id: XM_018882059.1
SIO_010081: AWJ20_4952
subclass of: SO_0000673
so part of: AWJ20_4952
location: <1052006..>1052797
location: region:1052006-1052797:1
so has part: feature:1052006-1052797:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1052006-1052797:1:exon

AWJ20_4952
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SPS19
locus tag: AWJ20_4952
inference: similar to AA sequence:KEGG_Orthology:K18337
note: Peroxisomal 2,4-dienoyl-CoA reductase; auxiliary enzyme of fatty acid beta-oxidation; homodimeric enzyme required for growth and sporulation on petroselineate medium; expression induced during late sporulation and in the presence of oleate; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 9268358]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IDA,ISS] [PMID 9268358]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IEP,IMP] [PMID 7969036]; GO_process: GO:0009062 - fatty acid catabolic process [Evidence IDA,ISS] [PMID 9268358]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]
codon start: 1
product: Sps19p
translation: MSGLLANKVAAITGGSSGIGRAIALEFAKNGAKVVINYYPNEQETSRAISLGNEIKQLFPNTTEPVYSSVPGDIGDPATGKALVAKAVDEFGKLDVFVSNAGICPFHEFTTMPEEVYYRTVKTNLDGAFFSTQAAANQMKLQGTGGSIIGISSISALVGGEFQTHYTTTKAGVLSLMQSTAVALGKYNIRCNALLPGTIETDINKDDLKDQSKRDYFNKRIPLGRLGEPSDLAGPAVFLASDLSKYVTGSQILVDGGLFVNLQ
SIO_010081: AWJ20_4952
subclass of: SO_0000673
so part of: AWJ20_4952
location: 1052006..1052797
location: region:1052006-1052797:1
so has part: feature:1052006-1052797:1:exon

XP_018736475.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1052006-1052797:1:exon

AWJ20_4953
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4953
so part of: sequence
location: <1055821..>1058106
location: region:1055821-1058106:1
so has part: feature:1055821-1058106:1:exon
subclass of: SO_0000010

30037141
type: Gene
SIO_000068: ncbigene

position:1055821:1
position: 1055821
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1058106:1
position: 1058106
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1055821-1058106:1:exon

AWJ20_4953
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4953
product: hypothetical protein
transcript id: XM_018882060.1
SIO_010081: AWJ20_4953
subclass of: SO_0000673
so part of: AWJ20_4953
location: <1055821..>1058106
location: region:1055821-1058106:1
so has part: feature:1055821-1058106:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1055821-1058106:1:exon

AWJ20_4953
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4953
codon start: 1
product: hypothetical protein
translation: MASANSRGETLLSSSPSNVISGTSYKGFPGNEQDEDDKDHFHQANVSIGSESNRTSRSLTSPVLSQHQLHHDPHVLHDLPSQHDFTYNSHIYSIGQASPQSPGFSRRSETGSHSSESSLSFTRDTPKRYSKPSLDRRRLSINTLLTNNERLESALELEEMECHKLEKTLQDHKIKLSNSLLLQSQLEDDLVKRDEQIGLLQKQAKDARKTRIELETELSEEVKKYINEKQMWLSKEEEYEEKLSNCNTKIKSLSENLEVARLEFENLKFSGGSSRSAAPSVKNVEASQPISDSGANKFIERMKKESEMAQQQMEMVTREYQARYNRIKSEMEQVQEVNKRLIEENEGFQLLLAEKTILGGFSLADELDQDVNQDVFISEDDETENQQKLSDTEASSSFESDSDLETPVSKRRPVRNSSLPNYAKDEAVTNAEGVDDIDPLDTDDDNIRSLDIPSDSSPTSDSKKSESKTPPSLSTNAKRQVYQLQFEKTSLQNYNRALKSSLERLVSRLLEYREFEKVVEDHNVLNKRSITSFQDRVVSLSNQHPPTLDVPRQRLNSASAPASTASNQRGHSFTSSISSGFSSVMGRSKGANSISGPSGNIQGHHSHSSSNPLFHMNPPTTPSGIVPRPYRGTLRPSSTWSSMLFAASPSTPTSPNINRDSRQFSTTSTNSESTAPRSPSSTSSLVSSSSAASISSGCSGTLSVIDPTILPLSDNKHLVRTTTRSQKQLRPLRLVVAPTDANSNPAPPLQSASSQSSGWFS
SIO_010081: AWJ20_4953
subclass of: SO_0000673
so part of: AWJ20_4953
location: 1055821..1058106
location: region:1055821-1058106:1
so has part: feature:1055821-1058106:1:exon

XP_018736476.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1055821-1058106:1:exon

AWJ20_4954
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: GCN20
locus tag: AWJ20_4954
so part of: sequence
location: <1058423..>1060684
location: region:1058423-1060684:1
so has part: feature:1058423-1060684:1:exon
subclass of: SO_0000010

30037142
type: Gene
SIO_000068: ncbigene

position:1058423:1
position: 1058423
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1060684:1
position: 1060684
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1058423-1060684:1:exon

AWJ20_4954
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: GCN20
locus tag: AWJ20_4954
product: putative AAA family ATPase GCN20
transcript id: XM_018882061.1
SIO_010081: AWJ20_4954
subclass of: SO_0000673
so part of: AWJ20_4954
location: <1058423..>1060684
location: region:1058423-1060684:1
so has part: feature:1058423-1060684:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1058423-1060684:1:exon

AWJ20_4954
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: GCN20
locus tag: AWJ20_4954
inference: similar to AA sequence:KEGG_Orthology:K06158
note: Positive regulator of the Gcn2p kinase activity; forms a complex with Gcn1p; proposed to stimulate Gcn2p activation by an uncharged tRNA; GO_component: GO:0005829 - cytosol [Evidence IPI] [PMID 9234705]; GO_component: GO:0022626 - cytosolic ribosome [Evidence IDA] [PMID 9234705]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 7621831]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006448 - regulation of translational elongation [Evidence IMP,IPI] [PMID 9234705]
codon start: 1
product: putative AAA family ATPase GCN20
translation: MPSLPDQVRQSVPAIDPIVAEYAAGYVQHISESTSDPVFANNLDIDGEVEFISSLLKDAGGDPSSVDSLYEKLIEELKKIYAASASKPYIDSASRKLDRDTLLSAQKHNTNRFGAGGGSDGMDLDLLSGRKVESRVDKKKLEKAEKKIAAKLAKRAAKMTAVGYEASKLLNIDDKEDYDTFFLTVNPLELGASQGKSKDIKIENFDLYVGAGQRILSNTSLTLAYGRRYGVVGQNGIGKSTLLKALSRRELAVPKHITILYVEQEVTGDETSALQTVLDADVWRKHLLLEQKKINDRISEISDLVRPLETTDPDYKALDEERDDLESNLNDIYDKLTEIESDKAEGRAAAILFGLGFSAEAQQQPTNSFSGGWRMRLSLARALFCKPDLLLLDEPSNMLDVPSITYLSNYLQSYPSTVVVVSHDRAFLNEVATDIIHQHSERLDYYRGSNFDSFYATREERRKNQQREYENQMAYRKHLQTFIDKFRYNAAKSSEAQSRIKKLEKLPILEPPEEDQTVTFRFPDPDKLSPPVIQLQGVDFGYSPDKLLLKNVDLDVGIDSRIALVGGNGCGKTTLLKILMDQLKPISGLVSRNGRLRIGYFAQHHIDGMDINLSPVEWMAKMSPGKSDEECRRLLGAFGITGTLGLQKIALLSGGQKSRVAFACLGLNTPHILVLDEPSNHLDTAGLDALADALRNFKGGILMVSHDVSTIDRVCNEIWLSESGTVRKFPGSIYDYKKYTLKQSTGAGVIAKQ
SIO_010081: AWJ20_4954
subclass of: SO_0000673
so part of: AWJ20_4954
location: 1058423..1060684
location: region:1058423-1060684:1
so has part: feature:1058423-1060684:1:exon

XP_018736477.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1058423-1060684:1:exon

AWJ20_4955
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: DIS3
locus tag: AWJ20_4955
so part of: sequence
location: complement(<1060860..>1063883)
location: region:1060860-1063883:-1
so has part: feature:1060860-1063883:-1:exon
subclass of: SO_0000010

30037143
type: Gene
SIO_000068: ncbigene

position:1060860:-1
position: 1060860
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1063883:-1
position: 1063883
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1060860-1063883:-1:exon

AWJ20_4955
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: DIS3
locus tag: AWJ20_4955
product: exosome catalytic subunit DIS3
transcript id: XM_018882062.1
SIO_010081: AWJ20_4955
subclass of: SO_0000673
so part of: AWJ20_4955
location: complement(<1060860..>1063883)
location: region:1060860-1063883:-1
so has part: feature:1060860-1063883:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1060860-1063883:-1:exon

AWJ20_4955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: DIS3
locus tag: AWJ20_4955
inference: similar to AA sequence:KEGG_Orthology:K12585
note: Exosome core complex catalytic subunit; has both endonuclease and 3'-5' exonuclease activity; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; role in degradation of tRNAs; has similarity to E. coli RNase R and to human DIS3; mutations in Dis3p corresponding to human mutations implicated in multiple myeloma cause phenotypes suggesting impaired exosome function; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0000178 - exosome (RNase complex) [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 9562621]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0000175 - 3'-5'-exoribonuclease activity [Evidence IDA,IMP] [PMID 17173052]; GO_function: GO:0000175 - 3'-5'-exoribonuclease activity [Evidence IDA,IMP] [PMID 17643380]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0004521 - endoribonuclease activity [Evidence IDA,IMP] [PMID 19060886]; GO_function: GO:0004521 - endoribonuclease activity [Evidence IDA] [PMID 19060898]; GO_function: GO:0004521 - endoribonucle…
codon start: 1
product: exosome catalytic subunit DIS3
translation: MAVATKRQSSSGRGSIAHKVFVRSSKAGNASKIVREQYLRSDIPCSSEACSVCIPPQNADGTFRPPVLAKIPNSNKQRGPHYVVVDTNIALKAIDLLEHKSIFYDVIIPQIVLEEVRNRSLPVYNRLRNLTKASDDEKRFYVFHNEFHQDTHVTRNKNESINDRNDRAIRQTSKWYQDHLKKTVDTRQNISSMDVDGDSSSSSAKMVVVPQIVLISDDRDNRTKAEAEGITALSLRSYLKEFPNGDDLLDLAPSDDWTATSSGLAAIYPSFYPMSRLLGGIKNGTLHQGILSISQFNFLEGSVRTQAYPKPILVLGRENLNRGFNGDVVVVELLPKSQWKIPSSSIIEEEELGKTEGADNESETIETDEERKALAEEALKAQHQQGESAASKVQPTARIVGIIKRNWRFYVGHVSAQSAAGVSSSDNSQKSIFVVPLDKCIPRIRIKTRKLGELVNKRIVVSIDDWPIHSRHPEGHFIRSLGEIESKEAETEALLLEHDVEYRPFPKSVLNCLPPEGHDWKVPENIESTTDEQLKKRRDLRHLLVCSIDPPNCQDIDDALHAHVLPNGNYEVGVHIADVTHFVKPNTPLDDEGASRGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFSFSVLWEMTPQGEIVNTEFTKSIIRSREAFEYGQAQARIDDESQNDDLTKGMRILLDLSKKLKKGRMDAGALNLSSPEVKVNTESETSDPGNVEIKKLLDTNSLVEEFMLLANISVAKKIYESYPQTAMLRRHGAPPATNFEILNDQLRIKKGMSIDLESSKTLADSLDKCVDPEEPFFNNLVRIMATRCMLAAEYFPSGEYGYPEFRHYGLASEIYTHFTSPIRRYADVVAHRQLAGAIDYESLHPSHRDRNKMESICRNINKRHRNAQFAGRASIEYYVGQVLKADESEQEGFIIKVFSNGINILVPKFGVESLIHLEDLGDPETASYDEDTYTLHLQSKDDKKPIALSIFDKVKVYVRSVKDETSGKRKVHMSLRS
SIO_010081: AWJ20_4955
subclass of: SO_0000673
so part of: AWJ20_4955
location: complement(1060860..1063883)
location: region:1060860-1063883:-1
so has part: feature:1060860-1063883:-1:exon

XP_018736478.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1060860-1063883:-1:exon

AWJ20_4956
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SKI8
locus tag: AWJ20_4956
so part of: sequence
location: <1064005..>1065479
location: region:1064005-1065479:1
so has part: feature:1064005-1065479:1:exon
subclass of: SO_0000010

30037144
type: Gene
SIO_000068: ncbigene

position:1064005:1
position: 1064005
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1065479:1
position: 1065479
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1064005-1065479:1:exon

AWJ20_4956
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SKI8
locus tag: AWJ20_4956
product: SKI complex subunit WD repeat protein SKI8
transcript id: XM_018882063.1
SIO_010081: AWJ20_4956
subclass of: SO_0000673
so part of: AWJ20_4956
location: join(<1064005..1064046,1064506..1064511,1064592..>1065479)
location: region:1064005-1065479:1
so has part: feature:1064005-1064046:1:exon
so has part: feature:1064506-1064511:1:exon
so has part: feature:1064592-1065479:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1064005-1064046:1:exon

position:1064046:1
position: 1064046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1064506-1064511:1:exon

position:1064506:1
position: 1064506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1064511:1
position: 1064511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1064592-1065479:1:exon

position:1064592:1
position: 1064592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

AWJ20_4956
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SKI8
locus tag: AWJ20_4956
inference: similar to AA sequence:KEGG_Orthology:K12601
note: Ski complex component and WD-repeat protein; mediates 3'-5' RNA degradation by the cytoplasmic exosome; also required for meiotic double-strand break recombination; null mutants have superkiller phenotype; GO_component: GO:0055087 - Ski complex [Evidence IDA] [PMID 10744028]; GO_component: GO:0055087 - Ski complex [Evidence IDA,IPI] [PMID 18042677]; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000228 - nuclear chromosome [Evidence IDA] [PMID 14992724]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0051607 - defense response to virus [Evidence IEA]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IGI,IMP] [PMID 12881429]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IMP] [PMID 9482746]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IMP] [PMID 11910110]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IMP] [PMID 17660569]; GO_process: GO:0006461 - protein complex assembly [Evidence IMP] [PMID 14992724]; GO_process: GO:0065004 - protein-DNA complex assembly [Evidence IMP] [PMID 14992724]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IGI,IMP,IPI] [PMID 14992724]
codon start: 1
product: SKI complex subunit WD repeat protein SKI8
translation: MKINFSTAARLLHELTILLWNNKDPEPKSAVKLNSPSSGTHHLSTDRSGRWLVAVSFDGKATLYDLDNLAGENGGSGRLLFEDVWAVAIEPNARHVVASQITGDIAVWDISAITEETPDQTTESAASQPQIKRIQKFSGNGGVLGLSVDFASNEEHVAAGFESGAIHVYNYKTGRLEYSLTGHSNPIRTVKFSPAATLLAIGGDSKLISLYSMTSGEHITNLTGSDGWVFGLDWNETGEFLLSASYDGRSRVWWLESRQCVAAQNDSSQPLFGCKWLKKGWGVGVIGGINQGFATVGVDKTLRWYREAAGN
SIO_010081: AWJ20_4956
subclass of: SO_0000673
so part of: AWJ20_4956
location: join(1064005..1064046,1064506..1064511,1064592..1065479)
location: region:1064005-1065479:1
so has part: feature:1064005-1064046:1:exon
so has part: feature:1064506-1064511:1:exon
so has part: feature:1064592-1065479:1:exon

XP_018736479.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1064005-1064046:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1064506-1064511:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1064592-1065479:1:exon

AWJ20_4957
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PRP6
locus tag: AWJ20_4957
so part of: sequence
location: complement(<1066075..>1069014)
location: region:1066075-1069014:-1
so has part: feature:1066075-1069014:-1:exon
subclass of: SO_0000010

30037145
type: Gene
SIO_000068: ncbigene

position:1066075:-1
position: 1066075
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1069014:-1
position: 1069014
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1066075-1069014:-1:exon

AWJ20_4957
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PRP6
locus tag: AWJ20_4957
product: Prp6p
transcript id: XM_018882064.1
SIO_010081: AWJ20_4957
subclass of: SO_0000673
so part of: AWJ20_4957
location: complement(<1066075..>1069014)
location: region:1066075-1069014:-1
so has part: feature:1066075-1069014:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1066075-1069014:-1:exon

AWJ20_4957
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PRP6
locus tag: AWJ20_4957
inference: similar to AA sequence:KEGG_Orthology:K12855
note: Splicing factor; component of the U4/U6-U5 snRNP complex; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10377396]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10449419]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 10377396]
codon start: 1
product: Prp6p
translation: MSGNKLSFLDMPAPAGYVPGLGRGATGFTTRSDIGPAKAGIVGDAVRAGEGDGNVVDDEERFRDPENDSGLLRSGFLDADDAEADRIYEAIDQRMEERRRQQREAREREEQEEFERKNPKISTQFKDLKRALGTISADEWASLPEVGDLTRKNKRQRKDMERRFYALPDSVIMGARNSGAVDSSIEAGGAAGLDETDETITDFRSISLAKDKMLGLRLDQAGTTAVPGSLTNGNGVGSVLNTSNNELVNGTENGRQTSVQRQPVYGGASTIDAKSYLSLSASAGVSGAEIGDIRRVRPLLESLVKTDPKEPRGWIGLARLEEIAHRMNKARSVIQQGCDNCPRNEDVWLENIRLHDKRTGKIIAAKAVGMIPNSINLWLAASDLEDDVNAKKRVIQKALESNPTSDTLWKKAVNLESEPNDAKLLLAQAVELVPLAEDLWLALARIETYKNARKVLGKARKALRVSRAVWIAAARLEEQEKGDAKTVDNIMSKGVRELESEGGLPERTVWISEAEQCESENAPLTCHAIIKTTIAQGLDESTVDDDDKKATWLEDAKGSISRGFLDTARSIYNYALEKFPTSRTLWMDLVKLEQLEKTAPKPPVTSTNGLDESNTQLAIVNGNNGDAATNRLWDVLEKAVTACPSTEEFWLIYYTEKAAIGDTAGAQEVLARAFKSNPKNESIWLAAVKLEVDTKQYDRASKLLERARRDAGTERVWIKSVVLERQLNHHDEALELIDHGLKLFPQSAKLHLQKGQIYLAKGDIPSARTAFTVGTRSSPKCVPLWLLLSKLEEQQTGVVRARAILDRASLVNDKNALIWLHRIQLEKRAGNESQAMKLMARALQDCPKSGLLWSEYILLQPRQSRMQILKQAVTECEHDPYVLTSAGRYFWQENKLPMAKKWLERAVKADNDNGDAWLWLYHFSVSNDKFLFEAPQVLKQMLAARPKHGLIWPSFFKDVASHETPLVDIFTRAAATLGQ
SIO_010081: AWJ20_4957
subclass of: SO_0000673
so part of: AWJ20_4957
location: complement(1066075..1069014)
location: region:1066075-1069014:-1
so has part: feature:1066075-1069014:-1:exon

XP_018736480.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1066075-1069014:-1:exon

AWJ20_4958
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ISW2
locus tag: AWJ20_4958
so part of: sequence
location: complement(<1069305..>1072295)
location: region:1069305-1072295:-1
so has part: feature:1069305-1072295:-1:exon
subclass of: SO_0000010

30037146
type: Gene
SIO_000068: ncbigene

position:1069305:-1
position: 1069305
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1072295:-1
position: 1072295
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1069305-1072295:-1:exon

AWJ20_4958
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ISW2
locus tag: AWJ20_4958
product: Isw2p
transcript id: XM_018882065.1
SIO_010081: AWJ20_4958
subclass of: SO_0000673
so part of: AWJ20_4958
location: complement(<1069305..>1072295)
location: region:1069305-1072295:-1
so has part: feature:1069305-1072295:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1069305-1072295:-1:exon

AWJ20_4958
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ISW2
locus tag: AWJ20_4958
inference: similar to AA sequence:KEGG_Orthology:K11654
note: ATP-dependent DNA translocase involved in chromatin remodeling; ATPase component that, with Itc1p, forms a complex required for repression of a-specific genes, INO1, and early meiotic genes during mitotic growth; the Isw2 complex exhibits basal levels of chromatin binding throughout the genome as well as target-specific chromatin interactions; targeted by Ume6p- and Sua7p-dependent DNA looping to many loci genome-wide; GO_component: GO:0008623 - CHRAC [Evidence IPI,ISS] [PMID 14673157]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 11238381]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 19203228]; GO_function: GO:0003682 - chromatin binding [Evidence IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 16227570]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0031491 - nucleosome binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 19203228]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IMP] [PMID 11238381]; GO_process: GO:0006338 - chromatin remodeling [Evidence IDA,IMP] [PMID 16227570]; GO_process: GO:0000183 - chromatin silencing at rDNA [Evidence IMP] [PMID 17689493]; GO_process: …
codon start: 1
product: Isw2p
translation: MANSARGSDNGSGRSRRGRGRAGAASRRRKTEREEDAELLHEEEEEEEDKTTVFTESPAFIRGTLREYQIQGLNWLISLHENSISGILADEMGLGKTLQTISFLGYLRWVRGVEGPHIVIVPKSTLDNWSREFAKWTPEVSVFILQGDKESRAEIINEKLLECDFDICVTSYEMVIREKAHLRKIAWQYIIVDEAHRIKNEESMLSQIIRLFHSRNRLLITGTPLQNNLHELWALLNFLLPDVFSDSQVFDQWFESQGSDQDKVVQQLHKVLRPFLLRRVKADVEKSLLPKKEVNVYIGMSEMQVKWYRKLLEKDIDAVNGAIGKREGKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHLVFNCGKMIILDKLLKRMKEIGSRVLIFSQMSRMLDILEDYCIFRDYEYSRIDGSTGHEDRIAAIDDYNKEGSDKFVFLLTTRAGGLGINLTSADIVVLYDSDWNPQADLQAMDRAHRIGQTKQVYVYRFVTENAIEEKVLERAAQKLRLDQLVIQQGRATSSTKDSKDSGSNSKTNAAASKDELLRMIQHGAPAIFENSTGTITSDTSIDSILKHGEERTAELNSRYAKLGLDDLQKFTSDSSAYEWNGQDFAKRNKLNNGMAWINPSKRERKEHAYSIDNYYKEVMATGNNANNNGFKPRYTSGRTPRFLKQANIQDHQFYTPRLRELQEKELAYSRRQAGYLLSEGDITEVDEGQTRQERLKIENDLIKNAEPLTEEEEAEKNELAASGFDNWARRDFTTFIHLIAKHGRHNYEAVAADFNDEDKTADEIKRYSEVFWKRYKEIDGYDKYIAQVEQGEERMRKMGRHKELLRQKIEQYEAPLSTMDVTYPATAKKIYSIEEDRFLLVAINDIGLETENLYEKVRDRISKSPLFRFNWYFQSRTPVELSRRCATLLLAINREAEGPVAAAKRKTGRPGRPRNLPSNTGSPDISFDEDNLEETSTYGTPAAPDRKSKKSRIEEVKDMTPDVA
SIO_010081: AWJ20_4958
subclass of: SO_0000673
so part of: AWJ20_4958
location: complement(1069305..1072295)
location: region:1069305-1072295:-1
so has part: feature:1069305-1072295:-1:exon

XP_018736481.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1069305-1072295:-1:exon

AWJ20_4959
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: HNM1
locus tag: AWJ20_4959
so part of: sequence
location: <1077739..>1079295
location: region:1077739-1079295:1
so has part: feature:1077739-1079295:1:exon
subclass of: SO_0000010

30037147
type: Gene
SIO_000068: ncbigene

position:1077739:1
position: 1077739
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1079295:1
position: 1079295
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1077739-1079295:1:exon

AWJ20_4959
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: HNM1
locus tag: AWJ20_4959
product: Hnm1p
transcript id: XM_018882066.1
SIO_010081: AWJ20_4959
subclass of: SO_0000673
so part of: AWJ20_4959
location: <1077739..>1079295
location: region:1077739-1079295:1
so has part: feature:1077739-1079295:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1077739-1079295:1:exon

AWJ20_4959
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: HNM1
locus tag: AWJ20_4959
note: Plasma membrane transporter for choline, ethanolamine, and carnitine; involved in the uptake of nitrogen mustard and the uptake of glycine betaine during hypersaline stress; co-regulated with phospholipid biosynthetic genes and negatively regulated by choline and myo-inositol; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 2203793]; GO_function: GO:1901235 - (R)-carnitine transmembrane transporter activity [Evidence IMP] [PMID 23755272]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015220 - choline transmembrane transporter activity [Evidence IMP] [PMID 2203793]; GO_function: GO:0015220 - choline transmembrane transporter activity [Evidence IGI] [PMID 3514579]; GO_function: GO:0034228 - ethanolamine transmembrane transporter activity [Evidence IGI] [PMID 3514579]; GO_process: GO:1900749 - (R)-carnitine transport [Evidence IMP] [PMID 23755272]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0015871 - choline transport [Evidence IMP] [PMID 2203793]; GO_process: GO:0015871 - choline transport [Evidence IGI] [PMID 3514579]; GO_process: GO:0034229 - ethanolamine transport [Evidence IGI] [PMID 3514579]; GO_process: GO:0031460 - glycine betaine transport [Evidence IMP] [PMID 16487344]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Hnm1p
translation: MEEPGNSKYDDTLLLEQFGYKQELKRSFSLLSMCGFCFAILSCWTALGGSLVEAMNAGGPVALVWGWIIVCAFSLMVALSLAELASAYPVAGGQYSWVLILCRGTKWGKGLSYATAFIQLAGLICMGSTALYQFGSFACGLGVLNSDGETWEPKDWQVVLICWALCLVCLVINIFINKMLHHISKFALWWTIGGFIVCTVTILAVSKYKQDASFVFTGYINNSGWNNNGMAVFFLQNAAYGMCCYDAPCHMGEEMENASRDIARAVVLSVVVGFVTGFAFVLALLFCIRDLDTVAATATGVPLLEIFFQSTNNSKAGASCLLVIIMVCQFLASNGLLTEGSRSVYAFARDGAFPYQINKYMGTVNSNYDVPICALIFCAVLQCAFIAIYFGSSTAFFTVISIATVGLYVSYLVPIIVVMFRRKLKTAGYYNLGRWGLWVNAPAALFLIYTSVCFFFPTALPITGDNMNYTIAAFAVCAILGLLSWFLGGRHTYGTLTESEFLEGVRDEPVVEIVEQKR
SIO_010081: AWJ20_4959
subclass of: SO_0000673
so part of: AWJ20_4959
location: 1077739..1079295
location: region:1077739-1079295:1
so has part: feature:1077739-1079295:1:exon

XP_018736482.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1077739-1079295:1:exon

AWJ20_4960
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MYO5
locus tag: AWJ20_4960
so part of: sequence
location: <1083035..>1086493
location: region:1083035-1086493:1
so has part: feature:1083035-1086493:1:exon
subclass of: SO_0000010

30037149
type: Gene
SIO_000068: ncbigene

position:1083035:1
position: 1083035
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1086493:1
position: 1086493
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1083035-1086493:1:exon

AWJ20_4960
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MYO5
locus tag: AWJ20_4960
product: myosin 5
transcript id: XM_018882068.1
SIO_010081: AWJ20_4960
subclass of: SO_0000673
so part of: AWJ20_4960
location: <1083035..>1086493
location: region:1083035-1086493:1
so has part: feature:1083035-1086493:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1083035-1086493:1:exon

AWJ20_4960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MYO5
locus tag: AWJ20_4960
inference: similar to AA sequence:KEGG_Orthology:K10356
note: One of two type I myosin motors; contains proline-rich tail homology 2 (TH2) and SH3 domains; MYO5 deletion has little effect on growth, but myo3 myo5 double deletion causes severe defects in growth and actin cytoskeleton organization; MYO5 has a paralog, MYO3, that arose from the whole genome duplication; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 16824951]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 20647997]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016459 - myosin complex [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000146 - microfilament motor activity [Evidence IDA] [PMID 16824951]; GO_function: GO:0003774 - motor activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0051666 - actin cortical patch localization [Evidence IGI,IMP] [PMID 18177206]; GO_process: GO:0007121 - bipolar cellular bud site selection [Evidence TAS] [PMID 10652251]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 16824951]; GO_process: GO:0006887 - exocytosis [Evidence TAS] [PMID 10652251]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence TAS] [PMID 10652251]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0006898 - receptor-mediated endocytosis [Evidence IMP] [PMID 8614799]; GO_process: GO:0006970 - response to osmotic stress [Evidence TAS] [PMID 10652251]; GO_process: GO:0009651 - response to salt stress [Evidence IGI,IPI] [PMID 12391157]
codon start: 1
product: myosin 5
translation: MKSYSESQCVIISGESGAGKTEAAKRIMQYIASVSGGSASSDIQRIKDMVLATNPLLESFGCAKTLRNDNSSRHGKYLEILFNGQGEPVGAQITNYLLEKARVVGQIRNERNFHIFYQFTKGATQQYREVYGIQGPETYLYTSASKCTSVDSIDDVKDFQETINAMKVIGLTQDEQDSVFRLLAAILWIGNIDFIENDEGSQIRDSSVPNFVAYLLDVDAASIEKALTIRIVETSRGGRRGSVYESPLNVVQAKAVRDALAKAIYDKLFDWIVYRVNESLKAQKGSSSLSIGILDIYGFEIFENNSFEQICINYVNEKLQQIFIQLTLKSEQEEYVREQISWTPIDYFNNKVVCDLIEERRPPGIFSVLNDAVATAHADSGAADQNFAMKLSMLSSNAHFEQRQNKFLIKHYAGDVMYDINGMTDKNKDQLLKDLLVLIDGSSNQFLKQLFPDQVDTDSRKRPPTASDKIKKSANALMDTLAQAQPSYIRTIKPNQHRSPSEYDEKAVLHQVKYLGLKENVRIRRAGFAYRQTFDKFVERFYLLSRKTSYAGDFIWQGDSRSATIQIFKDTGIPASEYQMGVTKAFIKTPETLFALEHMRDMYWHNMAARIQRAWRRHQKFKADCATKIQRAWREAKGSKKYIELRERGHAVLKNQKERRRMSLLGYRRFWGDYLACNVKNSPGGFMMKAIGVTDTVRFSCRGEILFAKFGRSSQRLDRVFILTAGKFFVVAESVIQNQLSFVVEHTYAASSIRSVSMTNLRDDWFALNTGSSSEPEPLLWCYFKTELVTLLNVPVKIGPTIQYNKKPGKPSTVKSQRDETAPPNYDAYKSGTIRVRTGQPANSVSEPIPKPKPKVKSATTTRSTPAAKPKTRRPPPRAPTVTALPSQAAAGVPPPRAANTYSYPSSTPAAASSIPAGPAVTAQPASMTNNTLGSGPGAAAAAAAAAAMSHTTSSARQAPVKATPSPAVPAQRTSPAAKRVSRVPPPPPVASSKPSPPPPAPPAQPTAKALYDYAGTRPNELSISKDEIVYVLQKADNGWWLAEKLDKSAQGWTPASYVEEIKVESAPPAAARKAPPPAPPKKKAIGSALTPNGGAATPSSDQTPSPTLASGLAEALKQKNQATNHLAGGLADALKARAGRHESEDEGDDDW
SIO_010081: AWJ20_4960
subclass of: SO_0000673
so part of: AWJ20_4960
location: 1083035..1086493
location: region:1083035-1086493:1
so has part: feature:1083035-1086493:1:exon

XP_018736483.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1083035-1086493:1:exon

AWJ20_4961
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4961
so part of: sequence
location: <1086761..>1086831
location: region:1086761-1086831:1
so has part: feature:1086761-1086831:1:exon
subclass of: SO_0000663

30037150
type: Gene
SIO_000068: ncbigene

position:1086761:1
position: 1086761
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:1086831:1
position: 1086831
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1086761-1086831:1:exon

AWJ20_4961
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_4961
product: tRNA-Gly
SIO_010081: AWJ20_4961
subclass of: SO_0000673
so part of: AWJ20_4961
location: <1086761..>1086831
location: region:1086761-1086831:1
so has part: feature:1086761-1086831:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1086761-1086831:1:exon

AWJ20_4962
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SEO1
locus tag: AWJ20_4962
so part of: sequence
location: <1088422..>1090065
location: region:1088422-1090065:1
so has part: feature:1088422-1090065:1:exon
subclass of: SO_0000010

30037151
type: Gene
SIO_000068: ncbigene

position:1088422:1
position: 1088422
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1090065:1
position: 1090065
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1088422-1090065:1:exon

AWJ20_4962
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SEO1
locus tag: AWJ20_4962
product: putative permease SEO1
transcript id: XM_018882069.1
SIO_010081: AWJ20_4962
subclass of: SO_0000673
so part of: AWJ20_4962
location: <1088422..>1090065
location: region:1088422-1090065:1
so has part: feature:1088422-1090065:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1088422-1090065:1:exon

AWJ20_4962
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SEO1
locus tag: AWJ20_4962
codon start: 1
product: putative permease SEO1
translation: MSKEKSDQLAAEPPVVHIPEPTVVSIPEPPVVHIPVQGDDELLRENAPTHWYDSFVRMVNWYPKHISKDERRLLIKVDFVLLSYVCISYFCKALEKSNITNAYVSGMKEDIDFGGNDLSYAKSLYSAGYIVSMCLGTMFVTRDWARLMLPVLEITWGVLSACESAVTNSSQMFALRFLIGFAEGPIFPSVLYIIGSWYNRDERYRRIMAFSVSSSLGGMFSGYLQSAAYGHLQGVGGHTGWQWGFIIDGAVIAIPLGVIGIFIFPGTPQQAKNVWWLKKSDIQLAVDRTIRNGVATPTKLNWSIVKRTLLRWHVHFFATFWVLLNIVALPDGTGFPLWLKSQSPERFSVAQVNNYPTIASAVGVVAQFLIAGFADSYPVYPFLSLCQVLFIISYSSLAAWDIPDGWRWVCFLIVGFDGVNQMLVSGWINDVTKADAEERAFVLGYSDAVSQAINIWTNIVFFPTEDAPKFHLGYIISTVGAILMLFLPILGYFGERWDKKHNYGLGSEVLVERSTGKIEATTSIAPSSALDPSSSLEHEPPAYSATQ
SIO_010081: AWJ20_4962
subclass of: SO_0000673
so part of: AWJ20_4962
location: 1088422..1090065
location: region:1088422-1090065:1
so has part: feature:1088422-1090065:1:exon

XP_018736484.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1088422-1090065:1:exon

AWJ20_4963
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PAN3
locus tag: AWJ20_4963
so part of: sequence
location: <1091776..>1093512
location: region:1091776-1093512:1
so has part: feature:1091776-1093512:1:exon
subclass of: SO_0000010

30037152
type: Gene
SIO_000068: ncbigene

position:1091776:1
position: 1091776
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1093512:1
position: 1093512
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1091776-1093512:1:exon

AWJ20_4963
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PAN3
locus tag: AWJ20_4963
product: Pan3p
transcript id: XM_018882070.1
SIO_010081: AWJ20_4963
subclass of: SO_0000673
so part of: AWJ20_4963
location: <1091776..>1093512
location: region:1091776-1093512:1
so has part: feature:1091776-1093512:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1091776-1093512:1:exon

AWJ20_4963
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PAN3
locus tag: AWJ20_4963
inference: similar to AA sequence:KEGG_Orthology:K12572
note: Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex; complex acts to control poly(A) tail length and regulate the stoichiometry and activity of postreplication repair complexes; GO_component: GO:0031251 - PAN complex [Evidence IDA] [PMID 8816488]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004535 - poly(A)-specific ribonuclease activity [Evidence IDA,IMP] [PMID 8816488]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 11953437]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IMP,IPI] [PMID 8816488]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0006301 - postreplication repair [Evidence IGI,IPI] [PMID 11953437]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]
codon start: 1
product: Pan3p
translation: MGNGQAAPSPGPGGGGAFVVPAHAPQQQQQQQQQQQQQQQQVQHQQQQQQQQQVHGGPVPPHHFQLQQTADEFNGLMIDSHQPPPPPPPQSHHHHQTMAPPPLHFQTPMTGNPDMLFQPHSAFPLQYHLYAPVPMRRARETLSPHERRIEDFFIRNDLREELQKKNEALLQKLPNSALPEFVHIYHSLVPLDTNIDKNDRLFGYPTWAYKATSNRDGRIYCLRRVEGFRLTNEHAIKLVQKWRNIDSPNIVKLYEAFTTRAFGDNSLVFVYDYYPLATTLFSTYFGPMVKFQHPLEQTRPIDEGLIWAYIIELVNALKAIHEAGLAARIVDPTRILVVKKGRIRLNCCGIFDILQFESSNGVISKEEIAALQQEDFINIGRLILILACKSTLGASQPLAKSFETISKQYSADLLQFTQHLLSSDAVEQPDAAVPTPITVGSLVTMLADKTLEYLSSSLYANDDLESQLSQELENGRLVRLLAKFGFINERPEYEHDPNWSESGDRYLIKLFRDYVFHQVDEMGKPIVDMGHVLACLNKLDAGVDEPILLVSRDEQSCLLVSYKELKSCISSAFRDLSK
SIO_010081: AWJ20_4963
subclass of: SO_0000673
so part of: AWJ20_4963
location: 1091776..1093512
location: region:1091776-1093512:1
so has part: feature:1091776-1093512:1:exon

XP_018736485.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1091776-1093512:1:exon

AWJ20_4964
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CYB2
locus tag: AWJ20_4964
so part of: sequence
location: complement(<1097279..>1099405)
location: region:1097279-1099405:-1
so has part: feature:1097279-1099405:-1:exon
subclass of: SO_0000010

30037153
type: Gene
SIO_000068: ncbigene

position:1097279:-1
position: 1097279
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1099405:-1
position: 1099405
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1097279-1099405:-1:exon

AWJ20_4964
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CYB2
locus tag: AWJ20_4964
product: Cyb2p
transcript id: XM_018882071.1
SIO_010081: AWJ20_4964
subclass of: SO_0000673
so part of: AWJ20_4964
location: complement(join(<1097279..1097589,1098268..>1099405))
location: region:1097279-1099405:-1
so has part: feature:1098268-1099405:-1:exon
so has part: feature:1097279-1097589:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1098268-1099405:-1:exon

position:1098268:-1
position: 1098268
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1097279-1097589:-1:exon

position:1097589:-1
position: 1097589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

AWJ20_4964
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CYB2
locus tag: AWJ20_4964
inference: similar to AA sequence:KEGG_Orthology:K11517
note: Cytochrome b2 (L-lactate cytochrome-c oxidoreductase); component of the mitochondrial intermembrane space, required for lactate utilization; expression is repressed by glucose and anaerobic conditions; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 3004948]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 6290489]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0070469 - respiratory chain [Evidence IEA]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0004460 - L-lactate dehydrogenase (cytochrome) activity [Evidence IEA]; GO_function: GO:0004460 - L-lactate dehydrogenase (cytochrome) activity [Evidence IDA] [PMID 3004948]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006089 - lactate metabolic process [Evidence IMP] [PMID 8492799]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]
codon start: 1
product: Cyb2p
translation: MSSSSNEKTKRILSIGELEAAALPMAPKMARDYWLSGANEMQTVRDNRSAFDNYRIRARALRDVSRINNRPQQLFGKTFEIPVGIAPTGFQKLAHEEGELATARAAQAKNWPMGLSSYSNTPLDEVKKAGGDSVVFLQLYVFKNRDTTEKLVRWAEQTGYKALLLTVDTPVIGRRFSDVHNDFKLPSHLVLGNFPESSGSGPVDVGVEPESLSRRGFADDSTGESQAGKANVLDPSLTWEETIPWLRSITKMEIWVKGIVTSEDAQLALDAGVDGVWVSNHGGRQLDSAVATLDSLPEVVETIKGRIPVHVDGGVRSGADVFKALALGADFVWLGRPVLFGLQYNGQAGVELLIDIIEEDLGYVMALSGNTDISKLSTKTGAPAAAEGEGAEAGAPAGAAAPPGVDGEGAGAPAGAPAALGEGAGAPAAGALGAGAAAGALGAGAGAGAGAGAGAGAGAPAAGALGAGAGAPAAALGAGAGS
SIO_010081: AWJ20_4964
subclass of: SO_0000673
so part of: AWJ20_4964
location: complement(join(1097279..1097589,1098268..1099405))
location: region:1097279-1099405:-1
so has part: feature:1098268-1099405:-1:exon
so has part: feature:1097279-1097589:-1:exon

XP_018736486.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1098268-1099405:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1097279-1097589:-1:exon

AWJ20_4965
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TAF11
locus tag: AWJ20_4965
so part of: sequence
location: <1101852..>1102523
location: region:1101852-1102523:1
so has part: feature:1101852-1102523:1:exon
subclass of: SO_0000010

30037154
type: Gene
SIO_000068: ncbigene

position:1101852:1
position: 1101852
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1102523:1
position: 1102523
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1101852-1102523:1:exon

AWJ20_4965
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TAF11
locus tag: AWJ20_4965
product: Taf11p
transcript id: XM_018882072.1
SIO_010081: AWJ20_4965
subclass of: SO_0000673
so part of: AWJ20_4965
location: <1101852..>1102523
location: region:1101852-1102523:1
so has part: feature:1101852-1102523:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1101852-1102523:1:exon

AWJ20_4965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TAF11
locus tag: AWJ20_4965
inference: similar to AA sequence:KEGG_Orthology:K03135
note: TFIID subunit (40 kDa); involved in RNA polymerase II transcription initiation, similar to histone H3 with atypical histone fold motif of Spt3-like transcription factors; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 10818000]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 12840001]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12138208]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15448131]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9083082]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]
codon start: 1
product: Taf11p
translation: MPPRKSKKEASRLKSEAARTPSAGDGLDDDDNFVAHAGNSERRPDQYDEEEEEDDDEDDAMGLGVTSARAGANGMAGLSVGGENGAINGVMAADLEREKMNLLLANFNEDQMSRYEAFRRANINRNGVKKLANAILNQSITPNVAVALSGMSKVFVGEVVERARDIQLRMNPPQSFEEYENRGAVPLKPEHLREAWRMMKLEAGTVPNAHWRRQGNADGMFFR
SIO_010081: AWJ20_4965
subclass of: SO_0000673
so part of: AWJ20_4965
location: 1101852..1102523
location: region:1101852-1102523:1
so has part: feature:1101852-1102523:1:exon

XP_018736487.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1101852-1102523:1:exon

AWJ20_4966
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SAC1
locus tag: AWJ20_4966
so part of: sequence
location: complement(<1102842..>1105616)
location: region:1102842-1105616:-1
so has part: feature:1102842-1105616:-1:exon
subclass of: SO_0000010

30037155
type: Gene
SIO_000068: ncbigene

position:1102842:-1
position: 1102842
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1105616:-1
position: 1105616
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1102842-1105616:-1:exon

AWJ20_4966
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SAC1
locus tag: AWJ20_4966
product: phosphatidylinositol-3-phosphatase SAC1
transcript id: XM_018882073.1
SIO_010081: AWJ20_4966
subclass of: SO_0000673
so part of: AWJ20_4966
location: complement(<1102842..>1105616)
location: region:1102842-1105616:-1
so has part: feature:1102842-1105616:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1102842-1105616:-1:exon

AWJ20_4966
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SAC1
locus tag: AWJ20_4966
note: Phosphatidylinositol phosphate (PtdInsP) phosphatase; involved in hydrolysis of PtdIns[4]P in the early and medial Golgi; regulated by interaction with Vps74p; ER localized transmembrane protein which cycles through the Golgi; involved in protein trafficking and processing, secretion, and cell wall maintenance; regulates sphingolipid biosynthesis through the modulation of PtdIns(4)P metabolism; GO_component: GO:0005797 - Golgi medial cisterna [Evidence IDA] [PMID 22553352]; GO_component: GO:0035339 - SPOTS complex [Evidence IDA] [PMID 20182505]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0030173 - integral component of Golgi membrane [Evidence IDA,IMP] [PMID 15657391]; GO_component: GO:0030173 - integral component of Golgi membrane [Evidence IDA] [PMID 8314848]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA,IMP] [PMID 11514624]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IMP] [PMID 11792713]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA,IMP] [PMID 15657391]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 8314848]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016791 - phosphatase activity [Evidence IMP] [PMID 22452743]; GO_function: GO:0043813 - phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity [Evidence IDA] [PMID 10625610]; GO_function: GO:0004438 - phosphatidylin…
codon start: 1
product: phosphatidylinositol-3-phosphatase SAC1
translation: MEKIVVGGKEGGDKPETESGGVVDSSATPAGELEFYSYGLVGKVDYGPGFVFAITKREHVATVHGRDIYRIKKVVAIPLSYHEAKRKIIASKQAGKKPGYCHEVEGDGKGQGGEDGHETEEQAETEEEEADLDGGDQVDDMDESDLLSLVNDDRSDDPSQKLTRRESISVLADDVAGETEVVKVTAKKGKGPKWKRWFSKSSSQENKGSETPQNDKSDSDIAQTGKKDKGRRKSSHGKAGDDAGDSDIQVNQAKSETEVGKNDKMDRSRRRSSHGKTGEVIEDKSEETAMQTKQPKSGLMGKFVRYVRMSLSSGSFYFSYDLDLTSTLGVEPGESPFKNIRDVFFFNRHATTIFQGTDLLLPVIQGFIGHCSIPLQPVSEDHIKENIQSQKEDNTETTADGETSGSTGDMFLISRRSNKRAGVRFLRRGIDDDANCANWVETEQLVQIPQGTQTTVCSFTQVRGSMPLYFSQSPYKLQPKPKLLKKKDEMRPVFIKHFERLQRHYGEVAGISLVEKAPSRESGVGELYKQLADETGVYLEWFDFHRVCKGLRFDNVETLFDTDIGTKLSQFGWSDSSNHKTQKGVFRVNCIDCLDRTNVVETFIGKRVIKQIIAEHGLEFEDWKRFQKQFNNVWADNGDAISQQYSSTNALKGDFTRTSKRNYRGVLNDAFLTMSRYFYGMVSDFFMQATIDYVLGNVDEQVFDEFEENMESRDLLVNLNSVRSSAIEATISIVVASELEVLYGGWWLLTPRQGDIRRAELKDTVVLVTDSAVYICDFDLKAEKVVDYHRIPANSVETIQKGSFYGEILSQASKNPSRNRGFLIKYRLDGVTSASDDSSISASTQTPTTKPPSDGTPAPTPTQSVAIKIPATQPDDFIHLLTALQQCCKHAQLIDQDIVSLKEATSNTGLWDTLEYYMKRAVWA
SIO_010081: AWJ20_4966
subclass of: SO_0000673
so part of: AWJ20_4966
location: complement(1102842..1105616)
location: region:1102842-1105616:-1
so has part: feature:1102842-1105616:-1:exon

XP_018736488.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1102842-1105616:-1:exon

AWJ20_4967
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CCT8
locus tag: AWJ20_4967
so part of: sequence
location: <1106562..>1108235
location: region:1106562-1108235:1
so has part: feature:1106562-1108235:1:exon
subclass of: SO_0000010

30037156
type: Gene
SIO_000068: ncbigene

position:1106562:1
position: 1106562
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1108235:1
position: 1108235
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1106562-1108235:1:exon

AWJ20_4967
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CCT8
locus tag: AWJ20_4967
product: Cct8p
transcript id: XM_018882074.1
SIO_010081: AWJ20_4967
subclass of: SO_0000673
so part of: AWJ20_4967
location: <1106562..>1108235
location: region:1106562-1108235:1
so has part: feature:1106562-1108235:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1106562-1108235:1:exon

AWJ20_4967
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CCT8
locus tag: AWJ20_4967
inference: similar to AA sequence:KEGG_Orthology:K09500
note: Subunit of the cytosolic chaperonin Cct ring complex; related to Tcp1p, required for the assembly of actin and tubulins in vivo; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IPI] [PMID 15704212]; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IDA] [PMID 16762366]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 16762366]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IDA] [PMID 16762366]
codon start: 1
product: Cct8p
translation: MSNLKMPSAPNSGLFKQGYQTYQAEDGAVNRNIAAVREISSMVRTSVGPCGRNKIVVNHLQKIFLTSDAATILRELEIVHPAAKLVVMASQQQETEMGDASNLVLILAGELLSLAEGLLRLGLNPSEISQGYEMAKNFAVDTLEKGTLFKNLANNQITDLTDVDQLRKAVSTAIGSKQYGSEQFLSGLVAEAVSYVMPKNPRYFNVDNVRVVKIMGSSLEASAVVRGMVFAREPEGSIKKVGTKSKVGVFSCPIDISTTETKGTVLLHNAKEMLEFSKGEEAQLESIVKELADSGLRVVIAGAGVGELALHYLNRYGILVFKVGSKFDLRRLCRVVGATPLPRLGAPMPEEMGVIDVVETIEIGGDRVTVFRQDHEQTRTSTIVVRGATQNSLDDIERAIDDGVNVVKALTKDTHLLPGAGATEIALATQIVAFGERTPGLLQHAIKKYGEAFEVIPRTLAENAGLDATDLVSKLYAAHAGTESTIGVDVDDNDGTGLLDAAQNGIFDLLAAKKSAIQLATDAATTVLSVDQIIMAKRAGGPVMPKQQSTGNWDQDD
SIO_010081: AWJ20_4967
subclass of: SO_0000673
so part of: AWJ20_4967
location: 1106562..1108235
location: region:1106562-1108235:1
so has part: feature:1106562-1108235:1:exon

XP_018736489.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1106562-1108235:1:exon

AWJ20_4968
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_4968
so part of: sequence
location: complement(<1110950..>1112794)
location: region:1110950-1112794:-1
so has part: feature:1110950-1112794:-1:exon
subclass of: SO_0000010

30037157
type: Gene
SIO_000068: ncbigene

position:1110950:-1
position: 1110950
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1112794:-1
position: 1112794
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1110950-1112794:-1:exon

AWJ20_4968
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_4968
product: 1-phosphatidylinositol-4-phosphate 5-kinase
transcript id: XM_018882075.1
SIO_010081: AWJ20_4968
subclass of: SO_0000673
so part of: AWJ20_4968
location: complement(<1110950..>1112794)
location: region:1110950-1112794:-1
so has part: feature:1110950-1112794:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1110950-1112794:-1:exon

AWJ20_4968
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_4968
inference: similar to AA sequence:KEGG_Orthology:K00889
note: Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]
codon start: 1
product: 1-phosphatidylinositol-4-phosphate 5-kinase
translation: MGALFFSNGNVLPSNGTHKVPRRPVLSDVRCGVSVPKYGACVQQENRRPARRSAFAYHKVLILECSPDDSGVSVGSDETLNEPTVWKPINIVSEQPYCEESNNTYSAPIDNDDDNFSEWSFEAGDEAAFTACQIQTTWSEENTEATWSAPATSWALSDCPIEIDENDFFPDSHGDVTLVESPLETSTTDLAESEEITPAKVDDETPCVIADAPAPATEGNSSIDGLVDEIIAVANLFKGLPQLIVSGGLQAEPDSELPTTAPLAPSRPIAQTPSDNLVIQVEEVNKSETPLLMTRAKAKLASFTGRASPITKSTLMFNGVQTAIDATPLSSQEALTMENKKYRLDGGAIIKAYSPIVYQNIRTICGIDYHEFLNSFLLQSDLTKTKSPGKSGSDFLFTPNGKYIIKTIKRKEHNVIANEEFLADYYNHIKAHPSTRLPFYLGNYTLVSGGKKTHFIIMKNLLQKETDLIYDLKGSSHDRSAGPRKDNRGRVVFKDLDWTDKHEAISLTQEDRDNLMVQISKDVDFLKRHNIMDYSLLVGLQSDTRTCEQQPVIGMIDTLCPFSWRKRAETTVKGLMFGRSAVDVVHPAKYGARFLNFVQSAVVPGTGRLVSTRC
SIO_010081: AWJ20_4968
subclass of: SO_0000673
so part of: AWJ20_4968
location: complement(1110950..1112794)
location: region:1110950-1112794:-1
so has part: feature:1110950-1112794:-1:exon

XP_018736490.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1110950-1112794:-1:exon

AWJ20_4969
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CDC11
locus tag: AWJ20_4969
so part of: sequence
location: <1116892..>1118268
location: region:1116892-1118268:1
so has part: feature:1116892-1118268:1:exon
subclass of: SO_0000010

30037158
type: Gene
SIO_000068: ncbigene

position:1116892:1
position: 1116892
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1118268:1
position: 1118268
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1116892-1118268:1:exon

AWJ20_4969
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CDC11
locus tag: AWJ20_4969
product: septin CDC11
transcript id: XM_018882076.1
SIO_010081: AWJ20_4969
subclass of: SO_0000673
so part of: AWJ20_4969
location: <1116892..>1118268
location: region:1116892-1118268:1
so has part: feature:1116892-1118268:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1116892-1118268:1:exon

AWJ20_4969
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CDC11
locus tag: AWJ20_4969
inference: similar to AA sequence:KEGG_Orthology:K16945
note: Component of the septin ring that is required for cytokinesis; septins are GTP-binding proteins that assemble into rod-like hetero-oligomers that can associate with other rods to form filaments; septin rings at the mother-bud neck act as scaffolds for recruiting cell division factors and as barriers to prevent diffusion of specific proteins between mother and daughter cells; GO_component: GO:0005619 - ascospore wall [Evidence IDA] [PMID 8636217]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0000144 - cellular bud neck septin ring [Evidence IDA] [PMID 1934633]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 18826657]; GO_component: GO:0001400 - mating projection base [Evidence IDA] [PMID 8791410]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0072687 - meiotic spindle [Evidence IDA] [PMID 18826657]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 18826657]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_component: GO:0031105 - septin complex [Evidence IEA]; GO_component: GO:0031105 - septin complex [Evidence IDA] [PMID 18550837]; GO_component: GO:0031105 - septin complex [Evidence IPI] [PMID 9813094]; GO_component: GO:0032160 - septin filament array [Evidence IDA] [PMID 15282341]; GO_component: GO:0005876 - spindle microtubule [Evidence IDA] [PMID 18826657]; GO_function: GO:0005545 - 1-phosphatidylinositol binding [Evidence IDA] [PMID 12665577]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IDA] [PMID 12665577]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005198 - structural molecule activity [Evidence IDA] [PMID 18550837]; GO_process: GO:0007049 - cell cycle [Evidence IEA,IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0030011 - main…
codon start: 1
product: septin CDC11
translation: MSSYSGLRKKAVKKIQFTVMVCGASGTGRTSFINTLCGQNVIPSSDLEYDPRNAHLEKGIEVRPIATEIEDPDGTRIALTIIDTPGFGDNIDNSECFDKIVGYLEFQYDEVLAEESRIRRNPRFKDNRVHVCLYFIESTGHGLRELDVEMMKKLSHRVNVIPVIGRADSLTPLEKTTSKRMIMEDLKQHNIPIFNFPYDPEEDDPETIQDNSELREMLPFAVVSGNEIIQTATSGRRIYGRVYPWGYVDVEDPSHSDFISLRSALFGSHLMDLKDLTHDYLYENYRTEKLSGTSAENVRASRLLNAEDLANQSYLLKGEQLAREEEKLREIELRVQREINEKRLELTARENELRAIEARLSRERSVSSSVPDQKSISTSNPGTPIADNTGSDETGSDSLMQSPSQENITRVTSNTTSNTAHSTNAASSHHLPDTQSPASFVSSNAEAFSSPVAVKQEI
SIO_010081: AWJ20_4969
subclass of: SO_0000673
so part of: AWJ20_4969
location: 1116892..1118268
location: region:1116892-1118268:1
so has part: feature:1116892-1118268:1:exon

XP_018736491.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1116892-1118268:1:exon

AWJ20_4970
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SAT4
locus tag: AWJ20_4970
so part of: sequence
location: complement(<1118508..>1122203)
location: region:1118508-1122203:-1
so has part: feature:1118508-1122203:-1:exon
subclass of: SO_0000010

30037160
type: Gene
SIO_000068: ncbigene

position:1118508:-1
position: 1118508
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1122203:-1
position: 1122203
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1118508-1122203:-1:exon

AWJ20_4970
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SAT4
locus tag: AWJ20_4970
product: serine/threonine protein kinase SAT4
transcript id: XM_018882078.1
SIO_010081: AWJ20_4970
subclass of: SO_0000673
so part of: AWJ20_4970
location: complement(<1118508..>1122203)
location: region:1118508-1122203:-1
so has part: feature:1118508-1122203:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1118508-1122203:-1:exon

AWJ20_4970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SAT4
locus tag: AWJ20_4970
codon start: 1
product: serine/threonine protein kinase SAT4
translation: MTGRGRGGASTGSGGGGYYAPNENTLAMMLAVAHPRDPVSRGSSRDPSQSQIRSPSQSLSLSSRSLSQSQSPAHSPALSQSQSPVFRSVSQSQSQFLSHPQDPILASAAVLAGRDHELERRRDLDGDIHTERDGERQRDRGRNPSHHHHHHHHQSRTRTASNNNSNSNINNSSNSNSNNNSSNNNSSNNNSSNTNSSNNNSSNTNSSNTNSSSNQRPKMHVKKSQGAELFIDEPLPEVPPSPGYEPPAFISGFGPDPGISVAVATNDSSIGKFPAPLKPMANSYYDEDLVTSVGSLKSDRSDRSGPLDMARRRSSANSFIHGELMRSGTQSSFKSDSSASSLGPHPSVHSGSVGTTITTNTITAVTTGSTITAAATDSTIGTKADSVGTIGGIASANRNSNSNSSGNNSGSEINTSTNNTNNNKNIGNENIKKIINDESNCNTINNINSNSSSSSTHKINSDKIAGNTAKTSSSSDLTPSTTDNSGVSAFNTPSFSATDGSTNVADTGNKSPTSVSPGSSSPLSSSRSPADIQPSPATQTRDDTPLGNNKPQRKGHGPLSGISKLIAKSAPSSQMKSFASAAYPTFNKPNTVTPGASRADTIAALAAQARQSVPVVIPPPSVTTSAATTAISTNQGIGTSISKATPNSSQPPSRSQSRPPSRPPSRPPSANRSGTPSEISSPSSESSSDGLSIRYERPVYTEQELNSAIASSDNTYDNSTDLEDYSERESNSASLRNSFYKEDRKTKSSTKSRRFPFRSNSMSTPISTSPKPKSRGFFSSSKSTTSNNPTPSNNNLKSIPITHLPGEYLPVQLHPSNNDWSLNSKYSLYKNLIRSNKLVGRGSTATVRTIQNTTTKQLFAVKIYHRYNSALDGDVTHYFKRLATEYQAGRQLNHRQIVRTFDLLVDNNGQWCSVLELCDGGDLFSLIESFRMDHKKMPKDDRNCLFKQLLLGINYLHFHGIVHRDIKPENLLLTSTGYLKISDLGVADSIFCSDLMMKDVNADSECDADDEDDACSRISSQVNMIRLSAGINGSGPYISPEVLMSKDDPAAPYYDGRLLDIWSCGIVYLNMAFNAGIFAKAHKSDPRYVKYVEEHKKYSDTEQKSDAILRNIFSMSSLTPSSSMTNISATSSLADTSNTMLPDSKEPPPVKERSYLSYFDEFGESGKKVIATMLSPDPQKRPQVGEVLSTHFIKAIELCVEPDPTDRDELLPHASKHGANHVHKAPQKSSK
SIO_010081: AWJ20_4970
subclass of: SO_0000673
so part of: AWJ20_4970
location: complement(1118508..1122203)
location: region:1118508-1122203:-1
so has part: feature:1118508-1122203:-1:exon

XP_018736492.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1118508-1122203:-1:exon

AWJ20_4971
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: KGD1
locus tag: AWJ20_4971
so part of: sequence
location: <1128650..>1131523
location: region:1128650-1131523:1
so has part: feature:1128650-1131523:1:exon
subclass of: SO_0000010

30037161
type: Gene
SIO_000068: ncbigene

position:1128650:1
position: 1128650
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1131523:1
position: 1131523
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1128650-1131523:1:exon

AWJ20_4971
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: KGD1
locus tag: AWJ20_4971
product: alpha-ketoglutarate dehydrogenase KGD1
transcript id: XM_018882079.1
SIO_010081: AWJ20_4971
subclass of: SO_0000673
so part of: AWJ20_4971
location: <1128650..>1131523
location: region:1128650-1131523:1
so has part: feature:1128650-1131523:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1128650-1131523:1:exon

AWJ20_4971
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: KGD1
locus tag: AWJ20_4971
inference: similar to AA sequence:KEGG_Orthology:K00164
note: Subunit of the mitochondrial alpha-ketoglutarate dehydrogenase complex; catalyzes a key step in the tricarboxylic acid (TCA) cycle, the oxidative decarboxylation of alpha-ketoglutarate to form succinyl-CoA; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IEA,IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 11926067]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 15692048]; GO_component: GO:0009353 - mitochondrial oxoglutarate dehydrogenase complex [Evidence IDA] [PMID 2072900]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016624 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor [Evidence IEA]; GO_function: GO:0004591 - oxoglutarate dehydrogenase (succinyl-transferring) activity [Evidence IEA,IEA]; GO_function: GO:0004591 - oxoglutarate dehydrogenase (succinyl-transferring) activity [Evidence TAS] [PMID 9175438]; GO_function: GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]; GO_process: GO:0006103 - 2-oxoglutarate metabolic process [Evidence TAS] [PMID 9175438]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence TAS] [PMID 9175438]
codon start: 1
product: alpha-ketoglutarate dehydrogenase KGD1
translation: MYSAWREDPSSVHVSWQSYFKNIEGGKPSSEAFSAPPTIVPTPSGGVVTFASSGESSGAGNGIIDHLKIQLLVRAYQVRGHQKAKVDPLGISFGADSKKNNVPKELTLEHYGFTEKDLDKKITLGPGILPRFAADGESQKSLRQIIEICEKIYCGSYGVEYIHISDRFKCDWIRERIEIPVPYKYSVDEKRRILDRLIWATLFESFLSSKFPNDKRFGLEGAETMVPGMKSLIDRSVDKGIEDVVIGMPHRGRLNMLSNVVRKPNESIFSEFAGSASFDEGSGDVKYHLGMNYRRPTPSGKKVNLSLVANPSHLEAEDPVVLGQTRAIQHYKKDEGTYEKAMGVLLHGDAAFAGQGVVYETIGFHSLPAYSTGGTIHIIINNQIGFTTDPRFSRSTPYPSDIAKGIEAPIFHVNGDDIEAVTFIFNLAADWRATFKSDVIIDIVCYRKYGHNETDQPSFTQPLMYQKIAKKDTALNYYVEKLLAEGSFTKEDIEEHKKWVWQLLEESFSKSKDYTPTQKEWVSSAWEGFKTPKELATEILPHLPTAIDEATVKEVGKIVSTVPEDFNLHRNLKRILNTRLKSIEEGKNIDWSTGEALAFGSLVKEGYHVRLSGQDVERGTFSQRHAVLHDQESEKTYVPIQTVGPDPDKFVISNSSLSEYGVMGFEYGYSLTSPDALVIWEAQFGDFANTAQVITDQFVAAGESKWAQRTGLVLSLPHGYDGQGPEHSSARIERYLQLANEDPRVFPSPDKLERQHQDCNMQIAYPSTPANLFHLLRRQMHRAFRKPLVLTFSKSLLRHPLARSSIEDFTGDSHFQWVIEDAEHGVSINSKEETKRLVLCSGQVFTALHKARETNGIKDTAFVKIEQFHPFPFAQIKDVLDSYPNVEDIVWCQEEPLNAGAWSFVSPRFATTFAETEHHKNATLRYAGRPPSASVAAGTKKAHLAEEEAFIKDALNL
SIO_010081: AWJ20_4971
subclass of: SO_0000673
so part of: AWJ20_4971
location: 1128650..1131523
location: region:1128650-1131523:1
so has part: feature:1128650-1131523:1:exon

XP_018736493.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1128650-1131523:1:exon

AWJ20_4972
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4972
so part of: sequence
location: complement(<1130657..>1131256)
location: region:1130657-1131256:-1
so has part: feature:1130657-1131256:-1:exon
subclass of: SO_0000010

30037162
type: Gene
SIO_000068: ncbigene

position:1130657:-1
position: 1130657
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1131256:-1
position: 1131256
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1130657-1131256:-1:exon

AWJ20_4972
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4972
product: hypothetical protein
transcript id: XM_018882080.1
SIO_010081: AWJ20_4972
subclass of: SO_0000673
so part of: AWJ20_4972
location: complement(<1130657..>1131256)
location: region:1130657-1131256:-1
so has part: feature:1130657-1131256:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1130657-1131256:-1:exon

AWJ20_4972
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4972
codon start: 1
product: hypothetical protein
translation: MELLDLDESSILDAICLTGLVQSSEDLTRTQNKTFRFLLGVNRNTVFSIFNNPLEVRVTSEVLNGGTGQRMTQQRLRECQDKRLSESSVHLSSQQVEQVGRSRGVGNLHVTVLVLTFKLVRRWENSRVFIGKLEVTFNSCRRVLRSLTVVTVRKRQNKTSSLGPLGLTGSHKLISNDLGGVGEITELGLPNNKSIGTGQ
SIO_010081: AWJ20_4972
subclass of: SO_0000673
so part of: AWJ20_4972
location: complement(1130657..1131256)
location: region:1130657-1131256:-1
so has part: feature:1130657-1131256:-1:exon

XP_018736494.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1130657-1131256:-1:exon

AWJ20_4973
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4973
so part of: sequence
location: complement(<1132153..>1134036)
location: region:1132153-1134036:-1
so has part: feature:1132153-1134036:-1:exon
subclass of: SO_0000010

30037163
type: Gene
SIO_000068: ncbigene

position:1132153:-1
position: 1132153
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1134036:-1
position: 1134036
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1132153-1134036:-1:exon

AWJ20_4973
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4973
product: Double-strand-break repair protein rad21-like protein 1
transcript id: XM_018882081.1
SIO_010081: AWJ20_4973
subclass of: SO_0000673
so part of: AWJ20_4973
location: complement(<1132153..>1134036)
location: region:1132153-1134036:-1
so has part: feature:1132153-1134036:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1132153-1134036:-1:exon

AWJ20_4973
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4973
inference: similar to AA sequence:KEGG_Orthology:K06670
codon start: 1
product: Double-strand-break repair protein rad21-like protein 1
translation: MIYSETSLTKQGSPLAHVWLVGSLDKKLTRREINSTDILKSVRIIRDNEGGTFALRLEGQLLLGVSRIYNTKVKNLETDCTVAFSELKAAFKPGNVNLPGSTDILSLLPEDNGITRNRQRSRTAVIIQNNASGESRSLLQNTLTDFTDLLPAFPMELSGDILSQASGTHNGPGNTNRFRDDDFNSAPSQFTQEVADTFDQSIEIGRRRGGLDEDEDEDEQNTRILADDDDENELNLDLDLDLDKEIEIGRGEEELPSFNLGADDDDGEMPPMIPDEEEGFGNVSANSPGINNPATPTGNELDEMIDIGVEDNANSKSVATAALLGDVNPKRKRALRDQTTTIVGPRADSRVQASQSQADRDEAIESILTDHPVLPNNSIAYGLLCLSDNHNQLLDSVFNQYSNPLLDIRSIAELLKKKADMESGRAEEGDATLQQIDFENDFGMSIVPGGDEDEEEGPNQKALRVDEEGNRAELVLDDEDGFPIVSEPLYNLDLEEEEEEDFFGTSFFGPSTQPENGEENQQPQSSQSNNRGVSRNTIIAAQKLRQGLEFEESISFSELSEGGRKSDKVKMFFEMLVLATKDAISIDQPAAFGDFNISAKPKLHNPIWDEPEQQEDATASLPAGIAV
SIO_010081: AWJ20_4973
subclass of: SO_0000673
so part of: AWJ20_4973
location: complement(1132153..1134036)
location: region:1132153-1134036:-1
so has part: feature:1132153-1134036:-1:exon

XP_018736495.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1132153-1134036:-1:exon

AWJ20_4974
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4974
so part of: sequence
location: <1135047..>1135119
location: region:1135047-1135119:1
so has part: feature:1135047-1135119:1:exon
subclass of: SO_0000663

30037164
type: Gene
SIO_000068: ncbigene

position:1135047:1
position: 1135047
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:1135119:1
position: 1135119
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1135047-1135119:1:exon

AWJ20_4974
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_4974
product: tRNA-Arg
SIO_010081: AWJ20_4974
subclass of: SO_0000673
so part of: AWJ20_4974
location: <1135047..>1135119
location: region:1135047-1135119:1
so has part: feature:1135047-1135119:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1135047-1135119:1:exon

AWJ20_4975
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SCP1
locus tag: AWJ20_4975
so part of: sequence
location: <1136414..>1137226
location: region:1136414-1137226:1
so has part: feature:1136414-1137226:1:exon
subclass of: SO_0000010

30037165
type: Gene
SIO_000068: ncbigene

position:1136414:1
position: 1136414
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1137226:1
position: 1137226
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1136414-1137226:1:exon

AWJ20_4975
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SCP1
locus tag: AWJ20_4975
product: Scp1p
transcript id: XM_018882082.1
SIO_010081: AWJ20_4975
subclass of: SO_0000673
so part of: AWJ20_4975
location: <1136414..>1137226
location: region:1136414-1137226:1
so has part: feature:1136414-1137226:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1136414-1137226:1:exon

AWJ20_4975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SCP1
locus tag: AWJ20_4975
note: Component of yeast cortical actin cytoskeleton; binds and cross links actin filaments; originally identified by its homology to calponin (contains a calponin-like repeat) but the Scp1p domain structure is more similar to transgelin; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 12857851]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_function: GO:0051015 - actin filament binding [Evidence IDA] [PMID 12857851]; GO_function: GO:0030674 - protein binding, bridging [Evidence IDA] [PMID 12857851]; GO_process: GO:0007015 - actin filament organization [Evidence IDA] [PMID 12857851]; GO_process: GO:0001300 - chronological cell aging [Evidence IGI,IMP] [PMID 15024029]
codon start: 1
product: Scp1p
translation: MENIAAFLKAAEVIGVPHHELFETVDLYEESNPAQVLITLRSLSRHAHSKNPSVPVLGPKLQSPSTKRKDFNPVNIPAWNTRQYGSLEGASQGTEGVIFGGTRNIIAQQSKPAPPPPNIVVNRNANRSETTKIEVKVPPKPGPKPVGLSFKSGGGSNSRLGTAPRGPRAFGSSASTRASVFGEDEEDTTDTPVSFSGKHRTVSFEERKRVNAELAAHGAKQQSGTDPESLDPSTYAYDEVYDTIQALRQQTNESEKDKGERKVSRLQTTS
SIO_010081: AWJ20_4975
subclass of: SO_0000673
so part of: AWJ20_4975
location: 1136414..1137226
location: region:1136414-1137226:1
so has part: feature:1136414-1137226:1:exon

XP_018736496.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1136414-1137226:1:exon

AWJ20_4976
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4976
so part of: sequence
location: <1137605..>1138135
location: region:1137605-1138135:1
so has part: feature:1137605-1138135:1:exon
subclass of: SO_0000010

30037166
type: Gene
SIO_000068: ncbigene

position:1137605:1
position: 1137605
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1138135:1
position: 1138135
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1137605-1138135:1:exon

AWJ20_4976
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4976
product: hypothetical protein
transcript id: XM_018882083.1
SIO_010081: AWJ20_4976
subclass of: SO_0000673
so part of: AWJ20_4976
location: <1137605..>1138135
location: region:1137605-1138135:1
so has part: feature:1137605-1138135:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1137605-1138135:1:exon

AWJ20_4976
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4976
codon start: 1
product: hypothetical protein
translation: MRSFYKSVLEEEDRRNEAIIEATKSVATVDSDKIKNVDNGEENALLTKAEKINKEVGYQKVQINDSGELVDDRQLLSAGLNVVKKRPVDNTKSTNSGRSISISDTKKPATYRKDRRRETELIERQLLAQEKRKRQEIESSKERIISQVKSRKTDDSISQARERYLARKKANQNTTD
SIO_010081: AWJ20_4976
subclass of: SO_0000673
so part of: AWJ20_4976
location: 1137605..1138135
location: region:1137605-1138135:1
so has part: feature:1137605-1138135:1:exon

XP_018736497.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1137605-1138135:1:exon

AWJ20_4977
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MIP1
locus tag: AWJ20_4977
so part of: sequence
location: complement(<1138305..>1141826)
location: region:1138305-1141826:-1
so has part: feature:1138305-1141826:-1:exon
subclass of: SO_0000010

30037167
type: Gene
SIO_000068: ncbigene

position:1138305:-1
position: 1138305
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1141826:-1
position: 1141826
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1138305-1141826:-1:exon

AWJ20_4977
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MIP1
locus tag: AWJ20_4977
product: DNA-directed DNA polymerase gamma MIP1
transcript id: XM_018882084.1
SIO_010081: AWJ20_4977
subclass of: SO_0000673
so part of: AWJ20_4977
location: complement(<1138305..>1141826)
location: region:1138305-1141826:-1
so has part: feature:1138305-1141826:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1138305-1141826:-1:exon

AWJ20_4977
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MIP1
locus tag: AWJ20_4977
inference: similar to AA sequence:KEGG_Orthology:K02332
note: Mitochondrial DNA polymerase gamma subunit; conserved C-terminal segment is required for the maintenance of mitochondrial genome; its human ortholog, POLG, can rescue mip1 phenotypes, and mutations in POLG are associated with Alpers-Huttenlocher syndrome (AHS) and other mitochondrial diseases; Mip1p is the single subunit of mitochondrial DNA polymerase in yeast, in contrast to metazoans in which there is a complex of a catalytic subunit and an accessory subunit; GO_component: GO:0005760 - gamma DNA polymerase complex [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 10567545]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0008408 - 3'-5' exonuclease activity [Evidence IDA] [PMID 20601675]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA] [PMID 20601675]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IEA]; GO_process: GO:0006264 - mitochondrial DNA replication [Evidence IDA] [PMID 12023279]; GO_process: GO:0006264 - mitochondrial DNA replication [Evidence IMP] [PMID 2684980]
codon start: 1
product: DNA-directed DNA polymerase gamma MIP1
translation: MRSRVFGTKPQILPDVDRIEQAKEHLALNNLLGKKTSISELIKFPVPELIGKDLDEHFHHIGRHMSEPYLTMATNFVRNGLPTMPSPETWIRKSGWTRYDPDGSTKSVPYPDDSALVFDTEVLYKISDFPVLAVAASEKAWYGWVSPWLLEETENPRQLVPLGTREKQKLVVGHNVGYDRKRVKDEYHITSSKSFFLDTMSLHIAVNGMCSRQRPAWMKMNKKKKNGEQTDEGTKAVDEFAASSKDRMGNANELPDEQSLSCDLEENPWFTHSALNNLADVAMLHCNIKMDKTTRDYFGTLDRRGVVDMFGDLMEYCATDVDVTYKVFQKVLPNFLEVCNHPVSFGALRHLSSCFLPINQEWEQFVEGAEKQYQEVQLEIYNRLKKLADDAVAMLSEAEDGTRTVVGDNILKDPWLSQLDWTIKPIKMVKGKKKGEPSRPAKNQKLPGMPQWYKDLYPTAASPMNISLRTRVAPLLLRLQWDEHPLFWVDSFGWIFKVKGGKETAKYTKLNYTRCDMTSLSKEELEKLGISKRSIYFKIPHNDGQAARCTNPMAKQYVSYFDRGVLSSQFEYAKSAVELNSQCTYWISSRERISRQMPIYDEDTDMGISNAETGDSKFGMIIPKIIPMGTVTRRAVEDLWLTASNAKKSRIGSELKAMVKAPAGYKFVGADVDSEELWIASVIGDSLFGIHGGTALGWMTLEGNKNDGTDLHSRTANILGISRNEAKVFNYGRIYGAGLKFAIQLLKQFNPLITDKEAEEAATKLYDATKGKKARSNAFKANRFWRGGSESIVFNRLEEMAEQDVPRTPVLGASVTQALMKQNLRKSNFLTSRINWTIQSSGVDYLHLLIASMDYLISKFNIEARLVITVHDEIRYLVKEEDKYRAALALQISNLWTRAMFCQQLGIDNVPQSVAFFSLIDIDHVLRKEVDLDCVTPSHPEAIPHGEAISIVDLLKICSDLAGDSGSENPSYATSDYKERIPVLRDLSMAEPNMTEYLAAQITCEKDKFQSIVQSVKNKSLKRPRRVNAKRDSGADDSVSKVASDQANNETKDPPKRSSKPKSTVNRKKPGDSSTSGKKTATAKDSSKHKKTSKSKDTLSANINETSEGTCENIIENDTSTDLDEAVPEHLPIRTSSVSPFKFPESSKVFDNSTIFFDNGDFVLPTRSEYREY
SIO_010081: AWJ20_4977
subclass of: SO_0000673
so part of: AWJ20_4977
location: complement(1138305..1141826)
location: region:1138305-1141826:-1
so has part: feature:1138305-1141826:-1:exon

XP_018736498.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1138305-1141826:-1:exon

AWJ20_4978
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4978
so part of: sequence
location: <1142699..>1143340
location: region:1142699-1143340:1
so has part: feature:1142699-1143340:1:exon
subclass of: SO_0000010

30037168
type: Gene
SIO_000068: ncbigene

position:1142699:1
position: 1142699
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1143340:1
position: 1143340
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1142699-1143340:1:exon

AWJ20_4978
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4978
product: hypothetical protein
transcript id: XM_018882085.1
SIO_010081: AWJ20_4978
subclass of: SO_0000673
so part of: AWJ20_4978
location: <1142699..>1143340
location: region:1142699-1143340:1
so has part: feature:1142699-1143340:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1142699-1143340:1:exon

AWJ20_4978
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4978
codon start: 1
product: hypothetical protein
translation: MSDSGANDLLEALAKDTNPDAVQSTSSRRQLRRRNSLTAATDFTSSHLGAESSSERPLALIHGSSSTSEASKLDDPSVAEYPESYLNAADEVSSLSSFIGSDESSSDSELSPVQLLSDLMTNVFDPSSLDRVVVLQAQSSGMVHAKTREVQQLHLQATARLEEIKQTFSQDLKAAKQLVKDLEWTQRRLAAAIKKAKVVYPIEYAQAVEKIKP
SIO_010081: AWJ20_4978
subclass of: SO_0000673
so part of: AWJ20_4978
location: 1142699..1143340
location: region:1142699-1143340:1
so has part: feature:1142699-1143340:1:exon

XP_018736499.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1142699-1143340:1:exon

AWJ20_4979
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: OXR1
locus tag: AWJ20_4979
so part of: sequence
location: complement(<1143662..>1144726)
location: region:1143662-1144726:-1
so has part: feature:1143662-1144726:-1:exon
subclass of: SO_0000010

30037169
type: Gene
SIO_000068: ncbigene

position:1143662:-1
position: 1143662
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1144726:-1
position: 1144726
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1143662-1144726:-1:exon

AWJ20_4979
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: OXR1
locus tag: AWJ20_4979
product: Oxr1p
transcript id: XM_018882086.1
SIO_010081: AWJ20_4979
subclass of: SO_0000673
so part of: AWJ20_4979
location: complement(<1143662..>1144726)
location: region:1143662-1144726:-1
so has part: feature:1143662-1144726:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1143662-1144726:-1:exon

AWJ20_4979
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: OXR1
locus tag: AWJ20_4979
note: hypothetical protein required for oxidative damage resistance; required for normal levels of resistance to oxidative damage; null mutants are sensitive to hydrogen peroxide; member of a conserved family of proteins found in eukaryotes; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 15060142]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 11114193]
codon start: 1
product: Oxr1p
translation: MPDPKRRLSFNPFSWGSHDENNASEDPESTGRDNTVKGPNDDEFEKDIDVSDTHLKVKGGDDANNLQEKELHSTDDDTHQHGHLEHGGSINSTSRHHTFPESSEKSGDNPQDNTTDGSEEGGKHSGWRFTRRHTMEPSRAAKQNSSPARPPERPQSIEFELPPLDPVTLIGYNENTKSRLMTESLSTELRDLLPERLQLYSTWKLSYSLEQHGASLHTLYSNVVPKPQKRPGYLLVVKDKKGDIFGAYANEYFHTTESRRFYGNGECFLWKTSRLPNGDIRFQAFPYTGVNDFVIFCAPNFLSMGGGDGHYGLWLDDNLEHGVSSRTTTFGNEVLSSEPNFYVVALEVWCIGPS
SIO_010081: AWJ20_4979
subclass of: SO_0000673
so part of: AWJ20_4979
location: complement(1143662..1144726)
location: region:1143662-1144726:-1
so has part: feature:1143662-1144726:-1:exon

XP_018736500.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1143662-1144726:-1:exon

AWJ20_4980
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PUT4
locus tag: AWJ20_4980
so part of: sequence
location: complement(<1145796..>1146866)
location: region:1145796-1146866:-1
so has part: feature:1145796-1146866:-1:exon
subclass of: SO_0000010

30037171
type: Gene
SIO_000068: ncbigene

position:1145796:-1
position: 1145796
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1146866:-1
position: 1146866
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1145796-1146866:-1:exon

AWJ20_4980
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PUT4
locus tag: AWJ20_4980
product: proline permease PUT4
transcript id: XM_018882088.1
SIO_010081: AWJ20_4980
subclass of: SO_0000673
so part of: AWJ20_4980
location: complement(<1145796..>1146866)
location: region:1145796-1146866:-1
so has part: feature:1145796-1146866:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1145796-1146866:-1:exon

AWJ20_4980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PUT4
locus tag: AWJ20_4980
inference: similar to AA sequence:KEGG_Orthology:K16261
note: Proline permease; required for high-affinity transport of proline; also transports the toxic proline analog azetidine-2-carboxylate (AzC); PUT4 transcription is repressed in ammonia-grown cells; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 10654085]; GO_function: GO:0015193 - L-proline transmembrane transporter activity [Evidence IGI] [PMID 14968425]; GO_function: GO:0015193 - L-proline transmembrane transporter activity [Evidence IMP] [PMID 3552672]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015175 - neutral amino acid transmembrane transporter activity [Evidence IDA] [PMID 10654085]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IDA,IGI] [PMID 8455553]; GO_process: GO:0015804 - neutral amino acid transport [Evidence IDA] [PMID 10654085]; GO_process: GO:0015824 - proline transport [Evidence IDA] [PMID 10654085]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]
codon start: 1
product: proline permease PUT4
translation: MIVGVVLFFGGGPNHDRLGFRYWKDGNAFRPYIVGGAAGRFCGFWNSVVRAGYSVIMSPELITIASGEAEAPRRNTPKATKRFIYRLVFFYVFSVLVIGCIVSSSDPRLLNAVSSGVANAAASPFVIGIQNAGIPILNHIINAAILTSAWSAANSFLFAGSRSLYSLSLQGKAPKVFRYCNRKGVPYVALLAVSAIGCLGFLNASASSANVFTWFTNLSTIAGFIAWICILITYLRFRRAMAFNNILDTLPFKTAFQPYTTWVALVLLVIITITNGFTVFVGGSFTGADFVAAYITLPIFVVLYLGHKIYYRRWRWFTPTSEVDVTSGLSECEAYERSCPERVPRNALEKVWMWIA
SIO_010081: AWJ20_4980
subclass of: SO_0000673
so part of: AWJ20_4980
location: complement(1145796..1146866)
location: region:1145796-1146866:-1
so has part: feature:1145796-1146866:-1:exon

XP_018736501.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1145796-1146866:-1:exon

AWJ20_4981
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PUT4
locus tag: AWJ20_4981
so part of: sequence
location: complement(<1147052..>1147507)
location: region:1147052-1147507:-1
so has part: feature:1147052-1147507:-1:exon
subclass of: SO_0000010

30037172
type: Gene
SIO_000068: ncbigene

position:1147052:-1
position: 1147052
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1147507:-1
position: 1147507
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1147052-1147507:-1:exon

AWJ20_4981
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PUT4
locus tag: AWJ20_4981
product: proline permease PUT4
transcript id: XM_018882089.1
SIO_010081: AWJ20_4981
subclass of: SO_0000673
so part of: AWJ20_4981
location: complement(<1147052..>1147507)
location: region:1147052-1147507:-1
so has part: feature:1147052-1147507:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1147052-1147507:-1:exon

AWJ20_4981
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PUT4
locus tag: AWJ20_4981
inference: similar to AA sequence:KEGG_Orthology:K16261
note: Proline permease; required for high-affinity transport of proline; also transports the toxic proline analog azetidine-2-carboxylate (AzC); PUT4 transcription is repressed in ammonia-grown cells; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 10654085]; GO_function: GO:0015193 - L-proline transmembrane transporter activity [Evidence IGI] [PMID 14968425]; GO_function: GO:0015193 - L-proline transmembrane transporter activity [Evidence IMP] [PMID 3552672]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015175 - neutral amino acid transmembrane transporter activity [Evidence IDA] [PMID 10654085]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IDA,IGI] [PMID 8455553]; GO_process: GO:0015804 - neutral amino acid transport [Evidence IDA] [PMID 10654085]; GO_process: GO:0015824 - proline transport [Evidence IDA] [PMID 10654085]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]
codon start: 1
product: proline permease PUT4
translation: MSKANEKKLNVEYYGDDVSVIPKEDDVLITEDNKFGQTERSLKSRHVQFIALGGCIGTGLFVGSGAILQNGPGSLLCAYILMSFVIWSVNNTLGEMTTYLPVKGNSPGLMIGRYACPDLSFAANYIYVYSFALLVPSECVAGAIVVEYCKS
SIO_010081: AWJ20_4981
subclass of: SO_0000673
so part of: AWJ20_4981
location: complement(1147052..1147507)
location: region:1147052-1147507:-1
so has part: feature:1147052-1147507:-1:exon

XP_018736502.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1147052-1147507:-1:exon

AWJ20_4982
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MTW1
locus tag: AWJ20_4982
so part of: sequence
location: complement(<1150661..>1151479)
location: region:1150661-1151479:-1
so has part: feature:1150661-1151479:-1:exon
subclass of: SO_0000010

30037173
type: Gene
SIO_000068: ncbigene

position:1150661:-1
position: 1150661
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1151479:-1
position: 1151479
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1150661-1151479:-1:exon

AWJ20_4982
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MTW1
locus tag: AWJ20_4982
product: MIND complex subunit MTW1
transcript id: XM_018882090.1
SIO_010081: AWJ20_4982
subclass of: SO_0000673
so part of: AWJ20_4982
location: complement(<1150661..>1151479)
location: region:1150661-1151479:-1
so has part: feature:1150661-1151479:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1150661-1151479:-1:exon

AWJ20_4982
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MTW1
locus tag: AWJ20_4982
inference: similar to AA sequence:KEGG_Orthology:K11559
codon start: 1
product: MIND complex subunit MTW1
translation: MSLFSQSTGILTEHLGYVPIALIDELINAVNDILYKCTLAIEEFLQKRYGPRSNSSKKVSDQDIQLGTAKLETLLESIVDRCFDNFELYTLRNILTIPEDLITEGWIRLKHHRGIDFTSVDSDSLSDLDDEIERLEAQLYFETQLNAALKQKHQQTLQELDTFQNLKTNYPFLSASPPSSQQLKDTILFLSSQSIGLISKLEQTEQLYKSRPLRKSPASIPREVYIDQFSRRALESSGVQVISHVEKKTEQDVLKALQAASFFKSDSSSRDS
SIO_010081: AWJ20_4982
subclass of: SO_0000673
so part of: AWJ20_4982
location: complement(1150661..1151479)
location: region:1150661-1151479:-1
so has part: feature:1150661-1151479:-1:exon

XP_018736503.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1150661-1151479:-1:exon

AWJ20_4983
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RPA43
locus tag: AWJ20_4983
so part of: sequence
location: complement(<1153279..>1154337)
location: region:1153279-1154337:-1
so has part: feature:1153279-1154337:-1:exon
subclass of: SO_0000010

30037174
type: Gene
SIO_000068: ncbigene

position:1153279:-1
position: 1153279
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1154337:-1
position: 1154337
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1153279-1154337:-1:exon

AWJ20_4983
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RPA43
locus tag: AWJ20_4983
product: DNA-directed RNA polymerase I subunit RPA43
transcript id: XM_018882091.1
SIO_010081: AWJ20_4983
subclass of: SO_0000673
so part of: AWJ20_4983
location: complement(<1153279..>1154337)
location: region:1153279-1154337:-1
so has part: feature:1153279-1154337:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1153279-1154337:-1:exon

AWJ20_4983
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RPA43
locus tag: AWJ20_4983
inference: similar to AA sequence:KEGG_Orthology:K03004
note: RNA polymerase I subunit A43; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IDA] [PMID 11486042]; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IDA] [PMID 9837969]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0001054 - RNA polymerase I activity [Evidence IDA] [PMID 9837969]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006360 - transcription from RNA polymerase I promoter [Evidence IDA] [PMID 9837969]; GO_process: GO:0042790 - transcription of nuclear large rRNA transcript from RNA polymerase I promoter [Evidence IGI] [PMID 7592632]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]
codon start: 1
product: DNA-directed RNA polymerase I subunit RPA43
translation: MGAEAETKKRKLSVEQLESSKRPRQEEDESAQTTTSVVEVTSSIATPSQCFYKVSVSLYVSLAPVHLNDPVSGIKSQHLDPLLMTFFPEAGGVVLAHYNLELCGQDKRPAKSSSKPSDDLDGETDESGPIAVAKIMYDSPFAFMWINVDLLVWKPRAGDIVEGWINMQSPSHIGLLIHDTFNASIKRDAIPRDWRFVPNQEDEAEDGEDHTPNDQEQESAEDVTAATTGIEEEGVNDEKLINTSAENSGTSKASKGALVSPPRSLGYWVDGNGLRVDGKLNFTVRVFNVSGRTVSVQGSLLKPGAVKEDLTQPYRKTEDDIQVHGVPKAKHVTFVDDLEASSQSPNTGDDSN
SIO_010081: AWJ20_4983
subclass of: SO_0000673
so part of: AWJ20_4983
location: complement(1153279..1154337)
location: region:1153279-1154337:-1
so has part: feature:1153279-1154337:-1:exon

XP_018736504.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1153279-1154337:-1:exon

AWJ20_4984
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RAD17
locus tag: AWJ20_4984
so part of: sequence
location: complement(<1154727..>1155836)
location: region:1154727-1155836:-1
so has part: feature:1154727-1155836:-1:exon
subclass of: SO_0000010

30037175
type: Gene
SIO_000068: ncbigene

position:1154727:-1
position: 1154727
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1155836:-1
position: 1155836
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1154727-1155836:-1:exon

AWJ20_4984
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RAD17
locus tag: AWJ20_4984
product: Rad17p
transcript id: XM_018882092.1
SIO_010081: AWJ20_4984
subclass of: SO_0000673
so part of: AWJ20_4984
location: complement(<1154727..>1155836)
location: region:1154727-1155836:-1
so has part: feature:1154727-1155836:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1154727-1155836:-1:exon

AWJ20_4984
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RAD17
locus tag: AWJ20_4984
inference: similar to AA sequence:KEGG_Orthology:K02830
note: Checkpoint protein; involved in the activation of the DNA damage and meiotic pachytene checkpoints; with Mec3p and Ddc1p, forms a clamp that is loaded onto partial duplex DNA; homolog of human and S. pombe Rad1 and U. maydis Rec1 proteins; GO_component: GO:0030896 - checkpoint clamp complex [Evidence IEA]; GO_component: GO:0030896 - checkpoint clamp complex [Evidence IDA] [PMID 12604797]; GO_component: GO:0030896 - checkpoint clamp complex [Evidence IDA] [PMID 9891048]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 11356855]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003684 - damaged DNA binding [Evidence IEA]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IEA]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 12604797]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_process: GO:0000077 - DNA damage checkpoint [Evidence IEA]; GO_process: GO:0000077 - DNA damage checkpoint [Evidence IMP] [PMID 9564050]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006302 - double-strand break repair [Evidence IEA]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 17624540]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IEA]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IMP] [PMID 10511543]
codon start: 1
product: Rad17p
translation: MDVLFTATTTHVHHIYRVLKAISVTGKEASITVSDQGLKISVENASKSCQAHLFLNETLFSVYKFRPDLYNELETNDNINAGDATPLVATFNISLRALTGCLQIFADSTDKTTNSTNTANSAGGRDFSQRERQRANGNVGGNGKLNEISVSNQCLFVYRGPGYPFMIYFTQGLNAAVTTKCELATYDRNGSFDNPEKTEMENDYDDESQDAITIDPNSIVQKVILKGNVMEDALKELDAINTSIITIRASAKTAPHFTFISEGELGKSEYSFPNEGKILEVFLVAPPGQLYNGDIDSVMDRDDYDTTPDWVVVNSYAFATFNLIRETVFLANRINIRCDALGVMSIQSLCEGEPGCQSYIDFRFLPSEE
SIO_010081: AWJ20_4984
subclass of: SO_0000673
so part of: AWJ20_4984
location: complement(1154727..1155836)
location: region:1154727-1155836:-1
so has part: feature:1154727-1155836:-1:exon

XP_018736505.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1154727-1155836:-1:exon

AWJ20_4985
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MON1
locus tag: AWJ20_4985
so part of: sequence
location: <1157332..>1159215
location: region:1157332-1159215:1
so has part: feature:1157332-1159215:1:exon
subclass of: SO_0000010

30037176
type: Gene
SIO_000068: ncbigene

position:1157332:1
position: 1157332
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1159215:1
position: 1159215
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1157332-1159215:1:exon

AWJ20_4985
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MON1
locus tag: AWJ20_4985
product: Mon1p
transcript id: XM_018882093.1
SIO_010081: AWJ20_4985
subclass of: SO_0000673
so part of: AWJ20_4985
location: <1157332..>1159215
location: region:1157332-1159215:1
so has part: feature:1157332-1159215:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1157332-1159215:1:exon

AWJ20_4985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MON1
locus tag: AWJ20_4985
note: Protein required for cvt-vesicle/autophagosome fusion with the vacuole; associates, as a complex with Ccz1p, with a perivacuolar compartment; potential Cdc28p substrate; GO_component: GO:0035658 - Mon1-Ccz1 complex [Evidence IPI] [PMID 20797862]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12387888]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 12364329]; GO_component: GO:0031902 - late endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0032585 - multivesicular body membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0006914 - autophagy [Evidence IMP] [PMID 12387888]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 12134085]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0048278 - vesicle docking [Evidence IMP] [PMID 14662743]
codon start: 1
product: Mon1p
translation: MVIQPVTDDEILSVASPEPMRDDLSESATPNRRDSISDTSSNANVSLLTVDEHYLAPRRSFLDEMTASTTSAEGGDGSELERSGELQGPATTALSLEPGVAQEDVPQSRKSGASSTADLTKLLSEVLNNSAVGLESLSLNDSGSEAAGPVFTFPDTTKTQPTTSLSTNNNTSSKANMSSRVDGAQSIVEETESSESDMFLRHDKQYFVLSKAGKFIYSTYGTDEQVSGYTGILQTIMSYFESPSENGMESGVSNKASENNQNGSPLESSYLKSFTAGRTSFVFLVEKNLILVAVDKLGQSEAQLRQQLDFIYAQILSALTETRIAREFERRPNFDLRPLLGSTEKVLDTLTKEMCKGSPPVLLGALECLKLRKTVRDKINNVLMDCRSSNLLYGMIVADSRLVSVVRPRRHSLHPPDLYLLFSLLFKSASLKDGGEHWMPVCLPKFNPTGFLHAYINFFADNTALLLISPDKTAFYELQTARNEIVSQLTKQSLLGPIREALRKDRFKPMDIPAPLIRHFLYKSKNYVQFVMPSLELHYHDPAARYKLMNLYHELHPAVHSRTGGNAKIFYITRPNTTALAWVTPYFEMYCVTGTTTKEAISQSVRAAVSWIKAHEQRLFVIDGASF
SIO_010081: AWJ20_4985
subclass of: SO_0000673
so part of: AWJ20_4985
location: 1157332..1159215
location: region:1157332-1159215:1
so has part: feature:1157332-1159215:1:exon

XP_018736506.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1157332-1159215:1:exon

AWJ20_4986
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RVB2
locus tag: AWJ20_4986
so part of: sequence
location: <1160635..>1161999
location: region:1160635-1161999:1
so has part: feature:1160635-1161999:1:exon
subclass of: SO_0000010

30037177
type: Gene
SIO_000068: ncbigene

position:1160635:1
position: 1160635
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1161999:1
position: 1161999
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1160635-1161999:1:exon

AWJ20_4986
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RVB2
locus tag: AWJ20_4986
product: RuvB family ATP-dependent DNA helicase reptin
transcript id: XM_018882094.1
SIO_010081: AWJ20_4986
subclass of: SO_0000673
so part of: AWJ20_4986
location: <1160635..>1161999
location: region:1160635-1161999:1
so has part: feature:1160635-1161999:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1160635-1161999:1:exon

AWJ20_4986
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RVB2
locus tag: AWJ20_4986
inference: similar to AA sequence:KEGG_Orthology:K11338
note: ATP-dependent DNA helicase, also known as reptin; member of the AAA+ and RuvB protein families, similar to Rvb1p; conserved component of multiple complexes including the INO80 complex, the Swr1 complex, and the R2TP complex (Rvb1-Rvb2-Tah1-Pih1); involved in multiple processes such as chromatin remodeling, box C/D snoRNP assembly, and RNA polymerase II assembly; GO_component: GO:0070209 - ASTRA complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 10952318]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 24034245]; GO_component: GO:0097255 - R2TP complex [Evidence IDA] [PMID 15766533]; GO_component: GO:0097255 - R2TP complex [Evidence IPI] [PMID 18268103]; GO_component: GO:0000812 - Swr1 complex [Evidence IPI] [PMID 14645854]; GO_component: GO:0000812 - Swr1 complex [Evidence IPI] [PMID 14690608]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 16299513]; GO_component: GO:0005724 - nuclear telomeric heterochromatin [Evidence IDA] [PMID 22100294]; GO_component: GO:0005654 - nucleoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11604509]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0043140 - ATP-dependent 3'-5' DNA helicase activity [Evidence IDA] [PMID 10952318]; GO_function: GO:0043140 - ATP-dependent 3'-5' DNA helicase activity [Evidence IDA] [PMID 20553504]; GO_function: GO:0043141 - ATP-dependent 5'-3' DNA helicase activity [Evidence IEA]; GO_function: GO:0043141 - ATP-dependent 5'-3' DNA helicase activity [Evidence IDA] [PMID 18234224]; GO_function: GO:0003678 - DNA helicase activity [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:003250…
codon start: 1
product: RuvB family ATP-dependent DNA helicase reptin
translation: MVGQLKARKAAAVVLQMIKEGKIAGRAVLVAGPPSTGKTAIAMGISQSLGSDVPFTTVAGSEIFSLELSKTEALTQAFRKSIGVRIKEETELIEGEVVEIQVDRSIAGGQKQGKLTIKTTDMETVYELGTKMIDSLSKEKVTAGDVVSIDKASGKITKLGRSYTRSRDYDAMSADTKFVQCPEGELQRRKEVVHTVSLHEIDVINSRSQGFLALFSGDTGEIRSEVRDQINTKVSEWREEGKAEIIPGVLFIDEVHMLDIESFSYINRALEDDLSPIVIMATNRGVSRTRGTNYKSPHGLPVDLLDRVIIISTTPYNPEEIKQILSIRAQEEEVDVSVDALAILTKIGEETSLRYAANLITVANLIATKRKSQTVDVEDVKRSYSLFWDANRSVQYLSQYSDNLVNDAGAATLGGVKTIANPAAPAQAPATTAPVPSTTPATTTASGDTMDTTS
SIO_010081: AWJ20_4986
subclass of: SO_0000673
so part of: AWJ20_4986
location: 1160635..1161999
location: region:1160635-1161999:1
so has part: feature:1160635-1161999:1:exon

XP_018736507.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1160635-1161999:1:exon

AWJ20_4987
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4987
so part of: sequence
location: complement(<1163439..>1166153)
location: region:1163439-1166153:-1
so has part: feature:1163439-1166153:-1:exon
subclass of: SO_0000010

30037178
type: Gene
SIO_000068: ncbigene

position:1163439:-1
position: 1163439
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1166153:-1
position: 1166153
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1163439-1166153:-1:exon

AWJ20_4987
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4987
product: hypothetical protein
transcript id: XM_018882095.1
SIO_010081: AWJ20_4987
subclass of: SO_0000673
so part of: AWJ20_4987
location: complement(<1163439..>1166153)
location: region:1163439-1166153:-1
so has part: feature:1163439-1166153:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1163439-1166153:-1:exon

AWJ20_4987
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4987
codon start: 1
product: hypothetical protein
translation: MTSSIEDPWGDGTMSGIGGGDLSVPDANSSTPNSPVVIEEVNLEDPEDVVLDESKSHEEKSQILQKMLFSASSNGDIDRVHDLLGSETTRPFIDVNRKDENGSTALIYSSCFGHDAVVAELLRFSASPDEQDKHEWTALMWAINNHHTSIVRQLIENEASVTLKTSTGRSALNFVTPHSDIYKYLEQRGYINDTGAEDDFYFQAKDPNEVEEELSRQFMIESAAINLDVDLAHLNVKDDDDDDFYDGTTARTPRGDDDEDDNTGSQHFIWERCLPDQMFVFNISDIPRILNIAITDMQPQRSRSQKPVPANMIFLSARYAHYYCNEETLEHLLNPVIMRIRSVMNEHTQDIAFLAFWLSNCSLLLYYLRKDPGLNAVTTQFQGNLSQLIGDIYVLITQDVELRFDKTLDASILDHETIPGLDAIAYQSEWKIFKSKAKPLTHKEEVDQVTKPPSPKRKAQPSPRNITSVLSSVLFVMDLYDVHPIITQQIISQILFWLGAVLFNRVMSNRKYLARSRAMQVRLNVSAIEDWARSNNRQPEQVDEFGNSTATTTSKSNLAYLSIVDICQRHFSSLVQILQWLQCFTGFGDDFTNVIATLQQLTNLNPLQLLHVAKKYRAEVGEKGLSKEYKAYLAQLAVHHERQYTHHATVDKPDIKREIRAANDKSKGKDKENVDNATSSKVEEKVVATTEKSSTESQSNGNVDNSSSQKPNNKPENTVQKADAAESDSKEEEQSSKEKENTTKPEEHKSSAESSDDSSNPAISAEDEERQKQPVQTTFTNNDSERDEQPGKLEIYLDASEVLPFIIPTLREMIVTWGAGLGGVNKQRAKKYEPSLPTDIIDKFDLSKEESDEYNDATLSSTTGASALDGGDTSMFQALAVPQPSVHKSWGDDPSVTDDLDAGW
SIO_010081: AWJ20_4987
subclass of: SO_0000673
so part of: AWJ20_4987
location: complement(1163439..1166153)
location: region:1163439-1166153:-1
so has part: feature:1163439-1166153:-1:exon

XP_018736508.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1163439-1166153:-1:exon

AWJ20_4988
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4988
so part of: sequence
location: complement(<1166461..>1167495)
location: region:1166461-1167495:-1
so has part: feature:1166461-1167495:-1:exon
subclass of: SO_0000010

30037179
type: Gene
SIO_000068: ncbigene

position:1166461:-1
position: 1166461
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1167495:-1
position: 1167495
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1166461-1167495:-1:exon

AWJ20_4988
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4988
product: hypothetical protein
transcript id: XM_018882096.1
SIO_010081: AWJ20_4988
subclass of: SO_0000673
so part of: AWJ20_4988
location: complement(<1166461..>1167495)
location: region:1166461-1167495:-1
so has part: feature:1166461-1167495:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1166461-1167495:-1:exon

AWJ20_4988
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4988
codon start: 1
product: hypothetical protein
translation: MLYHIRFYKVPTISIDSKKDLVLKSVITITNDLGDKFFFGNVNLKVDIGVGLNPILLSWTSGMQSCNLNIPIPKRTKSISVNVIAEISSLDDVLEENPQFLRLKTLPFKLPSGTCERVSIRYDLLHPPATQSNNGSESIDRSTDKLARPQLTIAEEAGSNNLARHVWDAGLATCQWLVDNRTVSQRKLLGSPRTIVELGTGCGLVGLALSKLFIDSKVILTDLEDANEICNRNIQLNIAQTNKRKRDVHNVAFQVFDWDSDETPVEKDKIDLVVVTDCTYNPSSYDSLLKALSIVTRTGTKILLAHKYRDPDEEEFFKRLTFKKLLDTTVDYYSQSVRLLVMEA
SIO_010081: AWJ20_4988
subclass of: SO_0000673
so part of: AWJ20_4988
location: complement(1166461..1167495)
location: region:1166461-1167495:-1
so has part: feature:1166461-1167495:-1:exon

XP_018736509.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1166461-1167495:-1:exon

AWJ20_4989
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RBD2
locus tag: AWJ20_4989
so part of: sequence
location: <1172739..>1173266
location: region:1172739-1173266:1
so has part: feature:1172739-1173266:1:exon
subclass of: SO_0000010

30037180
type: Gene
SIO_000068: ncbigene

position:1172739:1
position: 1172739
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1173266:1
position: 1173266
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1172739-1173266:1:exon

AWJ20_4989
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RBD2
locus tag: AWJ20_4989
product: Rbd2p
transcript id: XM_018882097.1
SIO_010081: AWJ20_4989
subclass of: SO_0000673
so part of: AWJ20_4989
location: <1172739..>1173266
location: region:1172739-1173266:1
so has part: feature:1172739-1173266:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1172739-1173266:1:exon

AWJ20_4989
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RBD2
locus tag: AWJ20_4989
note: Possible rhomboid protease; has similarity to eukaryotic rhomboid proteases including Pcp1p; GO_component: GO:0030137 - COPI-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 14562095]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IEA]; GO_function: GO:0008236 - serine-type peptidase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006508 - proteolysis [Evidence IEA]
codon start: 1
product: Rbd2p
translation: MIQVLAVVPGVVYCILGLLFFPNAAVAGASGWVFSFLGYFAYQDYRRTPLFNLSATHAIPTWSTPLVPLVMLAIFLPGSSFLGHLLGLLAGWAMALGYLDPLIEPSTKVVEWIEVKLARAIALIPSQFHFIGEVSARESRALARSDPLPTTETPVAATAGAGTQSFSGPGHVLGQ
SIO_010081: AWJ20_4989
subclass of: SO_0000673
so part of: AWJ20_4989
location: 1172739..1173266
location: region:1172739-1173266:1
so has part: feature:1172739-1173266:1:exon

XP_018736510.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1172739-1173266:1:exon

AWJ20_4990
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MRPS17
locus tag: AWJ20_4990
so part of: sequence
location: <1176584..>1177312
location: region:1176584-1177312:1
so has part: feature:1176584-1177312:1:exon
subclass of: SO_0000010

30037182
type: Gene
SIO_000068: ncbigene

position:1176584:1
position: 1176584
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1177312:1
position: 1177312
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1176584-1177312:1:exon

AWJ20_4990
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MRPS17
locus tag: AWJ20_4990
product: mitochondrial 37S ribosomal protein MRPS17
transcript id: XM_018882099.1
SIO_010081: AWJ20_4990
subclass of: SO_0000673
so part of: AWJ20_4990
location: <1176584..>1177312
location: region:1176584-1177312:1
so has part: feature:1176584-1177312:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1176584-1177312:1:exon

AWJ20_4990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MRPS17
locus tag: AWJ20_4990
inference: similar to AA sequence:KEGG_Orthology:K02961
note: Mitochondrial ribosomal protein of the small subunit; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 24390141]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]
codon start: 1
product: mitochondrial 37S ribosomal protein MRPS17
translation: MARQSFIGFVTSQGKMNKTIKVRVRKVKFNRVIHKDIIEYKDFMVHDELNKCQEGDVVRIQYVRPLSAHKSFAVAEIMKYKGTEWMKYQAEAPQKVTEEELKKLEEYKLERQARIEAKGTSSIAENIRKVEKSFAGDKSLAESDKPLVQDLMKKYGISSWPPSHEIIKLDASKLKKELQELDIEISALSYSSYTKDFLASQPEEADKILQSLGHDTTTMNSSIKKNILMKHFAKSFNSIPVA
SIO_010081: AWJ20_4990
subclass of: SO_0000673
so part of: AWJ20_4990
location: 1176584..1177312
location: region:1176584-1177312:1
so has part: feature:1176584-1177312:1:exon

XP_018736511.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1176584-1177312:1:exon

AWJ20_4991
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_4991
so part of: sequence
location: complement(<1179577..>1181421)
location: region:1179577-1181421:-1
so has part: feature:1179577-1181421:-1:exon
subclass of: SO_0000010

30037183
type: Gene
SIO_000068: ncbigene

position:1179577:-1
position: 1179577
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1181421:-1
position: 1181421
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1179577-1181421:-1:exon

AWJ20_4991
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_4991
product: 1-phosphatidylinositol-4-phosphate 5-kinase
transcript id: XM_018882100.1
SIO_010081: AWJ20_4991
subclass of: SO_0000673
so part of: AWJ20_4991
location: complement(<1179577..>1181421)
location: region:1179577-1181421:-1
so has part: feature:1179577-1181421:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1179577-1181421:-1:exon

AWJ20_4991
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_4991
inference: similar to AA sequence:KEGG_Orthology:K00889
note: Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]
codon start: 1
product: 1-phosphatidylinositol-4-phosphate 5-kinase
translation: MGAFFFSNGDVLPSNGTHKVPRRPVLSDIRCGVSVPKYGACVQQENRRPARRSAFAYHKVLILECSSDDSGISVGSDETLNEPTVWKPIDIVSEQPHCEESSNTYSATIDNDDDNFSEWSFEAGDEAAFTTRQIQTTWSEENTEATWTTPAASWALSDCPIEIDENDFSPDSHGDVTLVESPLETSTSDLAESEEITPAKVDDGTPCAIADAPTPAIEGNSSIDGLVAEIIAVANLFKGLPQLIVSGGLQAEPDSELPTTAPLAPFKPIAQTPSDNLVIQVEEVNKSKTPFLLTRAKAKLTSCTGRAAPITKSTLMFNGVQTAVDATPLSSQEALTMENKKYRLDGGAIIKAYSPIVYQNIRTLCGIDYHEFLNSFLLQSDLTKTKSPGKSGSDFLITPNGKYIIKTIKRKEHNVIANAEFLADYYNHIKAHSSTQLPFYLGNYTLVADGKKTHFIIMKNLLQKETDLIYDLKGSSHDRRAGPRKDNRGRVVFKDLDWTDKHEAISMTQEDRDKLMVQVSKDVDFLKRHNIMDYSLLVGLQSDTRTCEQQPVIGMIDTLCPFSWRKRAETTVKGLMFGRSAVDVVHPAKYGARFLNFVQSAVVPGPGRSVSTRC
SIO_010081: AWJ20_4991
subclass of: SO_0000673
so part of: AWJ20_4991
location: complement(1179577..1181421)
location: region:1179577-1181421:-1
so has part: feature:1179577-1181421:-1:exon

XP_018736512.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1179577-1181421:-1:exon

AWJ20_4992
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SCD5
locus tag: AWJ20_4992
so part of: sequence
location: <1183139..>1185460
location: region:1183139-1185460:1
so has part: feature:1183139-1185460:1:exon
subclass of: SO_0000010

30037184
type: Gene
SIO_000068: ncbigene

position:1183139:1
position: 1183139
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1185460:1
position: 1185460
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1183139-1185460:1:exon

AWJ20_4992
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SCD5
locus tag: AWJ20_4992
product: Scd5p
transcript id: XM_018882101.1
SIO_010081: AWJ20_4992
subclass of: SO_0000673
so part of: AWJ20_4992
location: <1183139..>1185460
location: region:1183139-1185460:1
so has part: feature:1183139-1185460:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1183139-1185460:1:exon

AWJ20_4992
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SCD5
locus tag: AWJ20_4992
note: Protein required for normal actin organization and endocytosis; targeting subunit for protein phosphatase type 1; undergoes Crm1p-dependent nuclear-cytoplasmic shuttling; multicopy suppressor of clathrin deficiency; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 12181333]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IMP] [PMID 16251346]; GO_function: GO:0008157 - protein phosphatase 1 binding [Evidence IDA] [PMID 12356757]; GO_function: GO:0008157 - protein phosphatase 1 binding [Evidence IPI] [PMID 8754819]; GO_process: GO:0007015 - actin filament organization [Evidence IMP] [PMID 12356757]; GO_process: GO:0030866 - cortical actin cytoskeleton organization [Evidence IMP] [PMID 12181333]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 16251346]; GO_process: GO:0009306 - protein secretion [Evidence IGI,IMP] [PMID 8688556]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Scd5p
translation: MNPFFETSVEDLNLSVEEQKSYPRWYTDLLVRKGKQSVAIGDTLSFVDNFGLTEADKHKILSIFGDPLVTLEPAQFYIFIRLASHILQGESISSSLIYIQAPVPKPKSILSRKRKKDVQSPSLAGTTGSNSISNGSANVGNNPFRRAPTVVSEESSVHSKPQKLDIDSFTQFILTGSMPSKSTPDSGAKSDYDSDDADRPPPTSRRKKRVTFNNDPPQVAEAAARSMEELLRQKGLQREQPTAVYQGSSGYPGGDLNSGSGMGFGGSNGSYDDSSQGQEEDEPDVEIDNTFKNVNIDSVLYHGVSNVTPEQEHFTFSDVISPSPSPPPPALYQSHTGNGAADNSKLSSIASMAGMMTPNGDPVSRSSLTSSIGSGTSPAIGLGLGAGVGGGPGSGSGTNSPNQQSFPNHSPIPFPAVGNGSEGNSSAPLPPPPPPPPPPRPRSDSRPNVSSSLAYSSITAGNHNNNTNVNSYPQSSNAGHALNHTISNSQVSNFHTGSSSSLVNPPTGPRLTSPLNSMTNSPFPSAPASISSTPTPAYNQIPVPSIQVNQHQYQNQQQQHHDHYQEQTLQPLQPQHTRSRPIPPPIRPMATGGDIPAIAPPPPQSRRVGSNSSIKSVNSINGSLSNGLSLQPQNGPPPQSLSSNTLQAFPSHFATSPPPPPASFSGQFVPHPGSPAPSLPPRQPSPLYQGGLAPPPPPSRRRAPSLPSQAVQYRASNPPGFSTPPLGAGGPNSFMPHRAALGQQQTGYTSSAPDLLADLKALQDEVDRINAQR
SIO_010081: AWJ20_4992
subclass of: SO_0000673
so part of: AWJ20_4992
location: 1183139..1185460
location: region:1183139-1185460:1
so has part: feature:1183139-1185460:1:exon

XP_018736513.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1183139-1185460:1:exon

AWJ20_4993
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MIF2
locus tag: AWJ20_4993
so part of: sequence
location: <1185846..>1187318
location: region:1185846-1187318:1
so has part: feature:1185846-1187318:1:exon
subclass of: SO_0000010

30037185
type: Gene
SIO_000068: ncbigene

position:1185846:1
position: 1185846
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1187318:1
position: 1187318
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1185846-1187318:1:exon

AWJ20_4993
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MIF2
locus tag: AWJ20_4993
product: Muscle M-line assembly protein unc-89
transcript id: XM_018882102.1
SIO_010081: AWJ20_4993
subclass of: SO_0000673
so part of: AWJ20_4993
location: <1185846..>1187318
location: region:1185846-1187318:1
so has part: feature:1185846-1187318:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1185846-1187318:1:exon

AWJ20_4993
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MIF2
locus tag: AWJ20_4993
codon start: 1
product: Muscle M-line assembly protein unc-89
translation: MDGLFKLLWPMSHHAGPSIDIPTYQQGCGEDQIDLQIKSLLYMFRRCGIAKSEQFRQGDELNGVTIRRHKLSDKRSVADLRVLGETPDNALNKYSPDGLQGMSAMDKQKLDVMYSKSQFERVLSNDEHRVLIDWTKNKFRSLCILSGRPKEIEIPSFECPNYHFIILPADASEEEYIRKLSTSDLYIEHSFSLAQRQKIIKEILFSVRAKKGRTTASPDNASQGNNTRFSKDERAFIIHKYLSVLATEIQVERLYRATLRAKQQQQHQQYQEQLQQQMNQSDLSEGSTSPPTASVFGSPGRMPRAGFVPSSADRSRSRSPERLSNGSSGNTGNRSPSRSPERLSNGTASANRIYIHGQNPASHSAVHSPKPAPKLSSYPSLPSLSSTNTRPYTGQSLSRSPSPGKFSLASSPPRATGGPVSMNAPTSPSAQRLRSKASNLNLRKTAPDLAPSAVAKIGDNIPPAIQRETMEQARFAVRSRIEKEKSLLST
SIO_010081: AWJ20_4993
subclass of: SO_0000673
so part of: AWJ20_4993
location: 1185846..1187318
location: region:1185846-1187318:1
so has part: feature:1185846-1187318:1:exon

XP_018736514.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1185846-1187318:1:exon

AWJ20_4994
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ERG10
locus tag: AWJ20_4994
so part of: sequence
location: <1187862..>1189106
location: region:1187862-1189106:1
so has part: feature:1187862-1189106:1:exon
subclass of: SO_0000010

30037186
type: Gene
SIO_000068: ncbigene

position:1187862:1
position: 1187862
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1189106:1
position: 1189106
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1187862-1189106:1:exon

AWJ20_4994
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ERG10
locus tag: AWJ20_4994
product: acetyl-CoA C-acetyltransferase
transcript id: XM_018882103.1
SIO_010081: AWJ20_4994
subclass of: SO_0000673
so part of: AWJ20_4994
location: <1187862..>1189106
location: region:1187862-1189106:1
so has part: feature:1187862-1189106:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1187862-1189106:1:exon

AWJ20_4994
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ERG10
locus tag: AWJ20_4994
inference: similar to AA sequence:KEGG_Orthology:K00626
note: Acetyl-CoA C-acetyltransferase (acetoacetyl-CoA thiolase); cytosolic enzyme that transfers an acetyl group from one acetyl-CoA molecule to another, forming acetoacetyl-CoA; involved in the first step in mevalonate biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 5571830]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence IEA]; GO_function: GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence IDA] [PMID 7989303]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_function: GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 200835]; GO_process: GO:0008152 - metabolic process [Evidence IEA]
codon start: 1
product: acetyl-CoA C-acetyltransferase
translation: MQRFATRSFSTSRASRSLKSAYILGGARTPIGNFGGSLKAVSAVDLGIVAANGAIEKAGIKKSDVQEVYFGHVIQGNVGQAPARQVVIKGGFPETTEATTINKVCASGLKSVSLAVQAIQTGDRDVLLAGGMESMSNTPYYSVRNASFGNQQLTDSILGDGLTDVYNKIHMGLCCENTNKREGITREDQDNFAIESYKRAIEAQKNGGFDNEIVPVTIKTKKGDVVVSEDEAPKVIKFESVPKLRPAFAKDGTITAANASSLNDGAAALVVSSGSKAKELGANVVAKVIAYADAATAPIDFTIAPSKAVPILLKRAGLTVDDIAKWELNEAFAGVSIANNRILGLDPAKVNVKGGAVAIGHPIGASGARILVTLINNLKEGEYGVAGICNGGGAATTLLIQKVSKVEDEVSSKL
SIO_010081: AWJ20_4994
subclass of: SO_0000673
so part of: AWJ20_4994
location: 1187862..1189106
location: region:1187862-1189106:1
so has part: feature:1187862-1189106:1:exon

XP_018736515.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1187862-1189106:1:exon

AWJ20_4995
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4995
so part of: sequence
location: <1189309..>1189893
location: region:1189309-1189893:1
so has part: feature:1189309-1189893:1:exon
subclass of: SO_0000010

30037187
type: Gene
SIO_000068: ncbigene

position:1189309:1
position: 1189309
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1189893:1
position: 1189893
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1189309-1189893:1:exon

AWJ20_4995
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4995
product: hypothetical protein
transcript id: XM_018882104.1
SIO_010081: AWJ20_4995
subclass of: SO_0000673
so part of: AWJ20_4995
location: <1189309..>1189893
location: region:1189309-1189893:1
so has part: feature:1189309-1189893:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1189309-1189893:1:exon

AWJ20_4995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4995
codon start: 1
product: hypothetical protein
translation: MRVEYYEERDDDSQELKKAVEIIKKRRGPTGLLELDRGLLHSPQMAVGWSQFLGSVRADSKLSRDIKELAISRVAFLNKAKYEWEHHSVIAAEAGVSAKGLTTIQQPDAISKGLSHDESVYGLTLKQQASVLYTDEMTKNVQVKDETFALLKQLFSEEEIVELTITVGAYNCVSRFLVALDINEQNERSRNWSS
SIO_010081: AWJ20_4995
subclass of: SO_0000673
so part of: AWJ20_4995
location: 1189309..1189893
location: region:1189309-1189893:1
so has part: feature:1189309-1189893:1:exon

XP_018736516.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1189309-1189893:1:exon

AWJ20_4996
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: EFR3
locus tag: AWJ20_4996
so part of: sequence
location: complement(<1190096..>1193077)
location: region:1190096-1193077:-1
so has part: feature:1190096-1193077:-1:exon
subclass of: SO_0000010

30037188
type: Gene
SIO_000068: ncbigene

position:1190096:-1
position: 1190096
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1193077:-1
position: 1193077
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1190096-1193077:-1:exon

AWJ20_4996
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: EFR3
locus tag: AWJ20_4996
product: Efr3p
transcript id: XM_018882105.1
SIO_010081: AWJ20_4996
subclass of: SO_0000673
so part of: AWJ20_4996
location: complement(<1190096..>1193077)
location: region:1190096-1193077:-1
so has part: feature:1190096-1193077:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1190096-1193077:-1:exon

AWJ20_4996
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: EFR3
locus tag: AWJ20_4996
note: Protein required for Stt4-containing PI kinase complex localization; required for Stt4-containing phosphoinositide (PI) kinase patch assembly at the plasma membrane; recruited to the plasma membrane via a conserved basic patch near its N-terminus; exhibits synthetic lethal genetic interactions with PHO85; has sequence similarity to the Drosophila rolling blackout (RBO) gene; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 19075114]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0090002 - establishment of protein localization to plasma membrane [Evidence IMP] [PMID 19075114]
codon start: 1
product: Efr3p
translation: MIRNKIAPKHQKLIRQCYPPGAKGLDKRPNASELSYLLYYVSTRRIKLTKVASFLEKLTRADVARDRFGNVQVTLEIVDALIERCYEDLNLFAPYVVSILLVVLPKADISLAHVAGKVFATFSKYHNGDLFAGDSDYVRACHELVVQFVGLASRHSSTSSGNLQWVQVSMEAAKSAASSAALATRVGQNEITTILPPVLNTLSLAQDSNGSSLLALQQQVNESGEENFDDGVTTTINRRQSILVIPPASSANPQVSQQGDDDDDDEDDDGDDDAIDYEEGNTTDFSTSRADISLDETNANVSKTTHAHSLSHMASKTKNLLGHAGSTTVNAASNVLTGLSNGADDSLNVSNSRVSFSSHQFEAELSEDESNASQENDILIIALKALVHLFDSTALIQVRHAALTVVGYIIEHNSPVAWSNVLLQLVTTWTPVQLRFVVLSALVEKYVNLKTTNLPLQKKLAYLIKSLLSSSVSMVGLSVMDILRSLLYHQQRFILVEAKPAEATQFQAMIDSTRETIAALASHNYYSDQISDMIAELLTRCIHGGAIGSGGISGSISTHSGDRAGTNNGSGQAPHPERQLSPRVSNTLIVNDLLNIREILDTVAANKDSYKVRVPLTVWEGTQSLISHDSVDVIDSFTSVFIKYLSSGLISTDKSRPVSKSMTSEKVILYRFIQTSFNVLREPSCSSQSILSVYYILVAFIRILGLHSVVSILPNIWSLEEVALKSEHKEVGTVQRGIELSSLILGVLAAVGQELSLQDFSAIVSNYINERKSNNVWYEGIQVPLSDYKQQIQQLNGSLNGIDSSHASRTSPIDRQSLADKFLADPNVISAKTKSELFESQPQHELKEESTEYSNGALQLSKARSLRQLKKGPLSINSANSGNRGPLVVGLRKASFANSIEQKRDFSPRVNDLRRAVSGVVLNGALGTNGRLQVPSNRERAGSSASSLSAHSASSHFEDSVKDVADFRDRVDLSSFLGSLNISQNTQRGRLTT
SIO_010081: AWJ20_4996
subclass of: SO_0000673
so part of: AWJ20_4996
location: complement(1190096..1193077)
location: region:1190096-1193077:-1
so has part: feature:1190096-1193077:-1:exon

XP_018736517.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1190096-1193077:-1:exon

AWJ20_4997
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4997
so part of: sequence
location: complement(<1194755..>1196146)
location: region:1194755-1196146:-1
so has part: feature:1194755-1196146:-1:exon
subclass of: SO_0000010

30037189
type: Gene
SIO_000068: ncbigene

position:1194755:-1
position: 1194755
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1196146:-1
position: 1196146
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1194755-1196146:-1:exon

AWJ20_4997
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4997
product: hypothetical protein
transcript id: XM_018882106.1
SIO_010081: AWJ20_4997
subclass of: SO_0000673
so part of: AWJ20_4997
location: complement(<1194755..>1196146)
location: region:1194755-1196146:-1
so has part: feature:1194755-1196146:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1194755-1196146:-1:exon

AWJ20_4997
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4997
codon start: 1
product: hypothetical protein
translation: MLAFQSRLRPVLCKLGGVQEITAAIGVLNPSRTSVFIGITAIAANSSGTRLFHLSAALYSVSGIRQKPPKSNKQAAQPSLRHVPTGTGGRKQGNTDTRTIRTPIQPDHNSPYYDADTNNSSGSLRTCTTASTCEHYDLAMAVDLFYKMGLRSATVLLPGEMVHVKYPFSTGKVADVLVLSNGTVVAWGMSESEVMDQLVPVLEKAEIRHYKVAETEDMDYVEEVDRDSEQRPATIATDEGSSETRNSDRDNVKASAIPNKGDNVPDPTPLNQFPNNSTQHVSHQNAGQTSTMVGDVIYIRGETSMARLLDKAAFSSGLARNTKLAALEISLDNYIKSIKELSDNLATGRKIELRGSEVLQITGKLLQIRGHLNLYSELIETPDLYWSEPQLEQLYSLISRKLDVSPRIAILNKRLDYASELAGILKSHISEEQSTRLEWMIIILITVEVCFEIVHFCEKYWPL
SIO_010081: AWJ20_4997
subclass of: SO_0000673
so part of: AWJ20_4997
location: complement(1194755..1196146)
location: region:1194755-1196146:-1
so has part: feature:1194755-1196146:-1:exon

XP_018736518.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1194755-1196146:-1:exon

AWJ20_4998
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MFG1
locus tag: AWJ20_4998
so part of: sequence
location: <1197435..>1199897
location: region:1197435-1199897:1
so has part: feature:1197435-1199897:1:exon
subclass of: SO_0000010

30037190
type: Gene
SIO_000068: ncbigene

position:1197435:1
position: 1197435
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1199897:1
position: 1199897
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1197435-1199897:1:exon

AWJ20_4998
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MFG1
locus tag: AWJ20_4998
product: Mfg1p
transcript id: XM_018882107.1
SIO_010081: AWJ20_4998
subclass of: SO_0000673
so part of: AWJ20_4998
location: <1197435..>1199897
location: region:1197435-1199897:1
so has part: feature:1197435-1199897:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1197435-1199897:1:exon

AWJ20_4998
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MFG1
locus tag: AWJ20_4998
note: Regulator of filamentous growth; interacts with FLO11 promoter and regulates FLO11 expression; binds to transcription factors Flo8p and Mss11p; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; YDL233W is not an essential gene; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]
codon start: 1
product: Mfg1p
translation: MMSASPIQGHQIPPGMVSAQKVPPGAPHQVMRANFPQGVNNQMAPFQLQMAMQQQQQQQQQQQQQQQQQQQQGPVTSQGPFPGVNNGSASGPGAGPGPSSGIGPSGSGTGTGLGPPNSNGSGQIPGPGPGPQQQFAAAHVNNAAVAAAAAHNSPIPGHLNPGSGGSGPPTTGVGAPGVPGNNLQAQIAQQQMQAQFLALQRQQAQQAAAAAAQGAGGEHQIPVNLQQQALQRQQQQQQQQQQQQQFQLRQLAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAHGQTPLPTGTNTPAASVGARGSPQTSNLPSQQAAAAAALHQRAVQTAALHSQQQHQQSIQNPQNQANPANPQNQPTPQNAQNTPNPQSSQSGQATPAPQTANPSIPSTPGTIPAGVSVADWNASLVAAAAAANSTAKPVAGSAVIRLLHFAELVGSVGDQTHDIEFWRRLVAEFFSENAMLKLSLSTGKETKHFDVPYQIIPRFFHTFIQSGVRRIQVNLENPREYFSSNSDHFVDCSRCSICYWFEDGTLVTCRCPTRILLNPALKIEWLEQQNLEHSEFINRQALMTSFTNPGPGSSQGDARFVKLAPTKVTPFGVTSSVVRFLEVSETISHMRDLMSFSVQPQAGGPLKALEALARALQSRDASNPAAQVQAQAQARVQQAQAQAQAQAQAQAQAQVQAQAQAQAHARAQAAAAAAAGGAAQNLINGGKLPFNGGPMMIPNGANTATGDMNAPQGSMSPHTFVPPGTPIPGPNATPTMSAKNPPRPVASPRAAKRRRPSAVKGEAESPALKQSPTSRKK
SIO_010081: AWJ20_4998
subclass of: SO_0000673
so part of: AWJ20_4998
location: 1197435..1199897
location: region:1197435-1199897:1
so has part: feature:1197435-1199897:1:exon

XP_018736519.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1197435-1199897:1:exon

AWJ20_4999
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: NOC4
locus tag: AWJ20_4999
so part of: sequence
location: <1201849..>1203513
location: region:1201849-1203513:1
so has part: feature:1201849-1203513:1:exon
subclass of: SO_0000010

30037191
type: Gene
SIO_000068: ncbigene

position:1201849:1
position: 1201849
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1203513:1
position: 1203513
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1201849-1203513:1:exon

AWJ20_4999
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: NOC4
locus tag: AWJ20_4999
product: Noc4p
transcript id: XM_018882108.1
SIO_010081: AWJ20_4999
subclass of: SO_0000673
so part of: AWJ20_4999
location: <1201849..>1203513
location: region:1201849-1203513:1
so has part: feature:1201849-1203513:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1201849-1203513:1:exon

AWJ20_4999
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: NOC4
locus tag: AWJ20_4999
inference: similar to AA sequence:KEGG_Orthology:K14771
note: Nucleolar protein; forms a complex with Nop14p that mediates maturation and nuclear export of 40S ribosomal subunits; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0030692 - Noc4p-Nop14p complex [Evidence IPI] [PMID 12446671]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12446671]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15590835]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10684247]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 15590835]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 12446671]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 12446671]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA,IEA]
codon start: 1
product: Noc4p
translation: MKRSGNDNSGAKTKKSKSSSTVETGLSESEITALQESILSSPKNYNEIAKLIDIVRDNSIKTSCRHSASAALLKIFGKLSKKGSLKKSGVVGASEQVAIWLNQRFIQFKELLLNNLSGASGSTNSPSLAVSALTILLKVFSVVEHKYLTPSTEYYYPKQTYSDIISSIVLSSLPSAVIDVVLEEFVKNYLMIYDDLRYYFYTELAAILSKELETEKKGGYDSPPFNGVPKTVVSRRVISTLQSISKFPKTDEEIENFFLSKPQFSKSSLKSGTPLKLSSHKIAFQKAWLAGLRLPQSSSQYKEVLNILHQRIIPNMQKPQLLMDFLTDSYNAGGPVALLALNGLFVLMQQYNLDYPNFFTKLYSLFDGSIMHAKHRSRFFRLVDLFLSSTHLPATICASFIKKMARLGLTAPPAAVVTIIPFIYNQLKRHPSCMKMIHRPEIDGEFSDPFDPTESDPLLTNAFDSSLWELEVLQTHYHPNVSTLAKIMSQPFRKPQYLLEDFLDHSYKTLFDAEKTRRVKAALPALEYESFDSVFVNPEINTGASTYMVGWSFA
SIO_010081: AWJ20_4999
subclass of: SO_0000673
so part of: AWJ20_4999
location: 1201849..1203513
location: region:1201849-1203513:1
so has part: feature:1201849-1203513:1:exon

XP_018736520.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1201849-1203513:1:exon

AWJ20_5000
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TPC1
locus tag: AWJ20_5000
so part of: sequence
location: complement(<1203669..>1204712)
location: region:1203669-1204712:-1
so has part: feature:1203669-1204712:-1:exon
subclass of: SO_0000010

30037195
type: Gene
SIO_000068: ncbigene

position:1203669:-1
position: 1203669
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1204712:-1
position: 1204712
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1203669-1204712:-1:exon

AWJ20_5000
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TPC1
locus tag: AWJ20_5000
product: Tpc1p
transcript id: XM_018882112.1
SIO_010081: AWJ20_5000
subclass of: SO_0000673
so part of: AWJ20_5000
location: complement(<1203669..>1204712)
location: region:1203669-1204712:-1
so has part: feature:1203669-1204712:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1203669-1204712:-1:exon

AWJ20_5000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TPC1
locus tag: AWJ20_5000
inference: similar to AA sequence:KEGG_Orthology:K15108
note: Mitochondrial membrane transporter; mediates uptake of the essential cofactor thiamine pyrophosphate (ThPP) into mitochondria; expression appears to be regulated by carbon source; member of the mitochondrial carrier family; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0031305 - integral component of mitochondrial inner membrane [Evidence IDA] [PMID 12411483]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0015234 - thiamine transmembrane transporter activity [Evidence IDA] [PMID 12411483]; GO_process: GO:0030974 - thiamine pyrophosphate transport [Evidence IDA,IMP] [PMID 12411483]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Tpc1p
translation: MATVPPIATSSSLGEEEAKSIPHSSRKRKHEDHLNSAVEISRLESIVCGGSAGLVSRFVISPLDVVKIRLQLQIKRLPLGPAGITAVPGETIFKTVKDIYQKEGVKVFWKGNVPAEVMYVLYGAIQFTTYKSVSKFLNDDVHWLGETPKLLISGSLAGTAATCLTYPLDLLRTRFAADSSKQRSSILESVRSIARIEGAKGFYRGLSPTLLSLIPNMGIFFVTYEETRRLMNASNLDSILPAPEATAGFIAGVFSKGCVFPLDVIRKRLQVQGPSYGRRTDIPIYPGNLFKCAKHIVIHEGARGLYKGFLISLLKSGPSSAVTIWTFENSLKVMRYFSNNQTATDSF
SIO_010081: AWJ20_5000
subclass of: SO_0000673
so part of: AWJ20_5000
location: complement(1203669..1204712)
location: region:1203669-1204712:-1
so has part: feature:1203669-1204712:-1:exon

XP_018736521.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1203669-1204712:-1:exon

AWJ20_5001
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SLP1
locus tag: AWJ20_5001
so part of: sequence
location: <1205530..>1208049
location: region:1205530-1208049:1
so has part: feature:1205530-1208049:1:exon
subclass of: SO_0000010

30037196
type: Gene
SIO_000068: ncbigene

position:1205530:1
position: 1205530
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1208049:1
position: 1208049
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1205530-1208049:1:exon

AWJ20_5001
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SLP1
locus tag: AWJ20_5001
product: Slp1p
transcript id: XM_018882113.1
SIO_010081: AWJ20_5001
subclass of: SO_0000673
so part of: AWJ20_5001
location: <1205530..>1208049
location: region:1205530-1208049:1
so has part: feature:1205530-1208049:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1205530-1208049:1:exon

AWJ20_5001
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SLP1
locus tag: AWJ20_5001
note: Glycosylated integral ER membrane hypothetical protein; forms an ER-membrane associated protein complex with Emp65p; member of the SUN-like family of proteins; genetic interactions suggest a role in folding of ER membrane proteins; required for nuclear envelope localization of Mps3p; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA,ISM] [PMID 23275891]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034975 - protein folding in endoplasmic reticulum [Evidence IGI] [PMID 19325107]
codon start: 1
product: Slp1p
translation: MNLKLRYKRRIRSLETLAGILTRLTAFSLVLANSDVTTAGQEGNTLDFNIIGNPNLNSDQNTYSTLEKGDALLAESPSLSLPSKGSELDASLLAVTDSAPQSTSTIHISTQIRSLDTQQDSIANFSVPSKLSDISYSQSSTVSVSPAITPSSSATSSTDESTTRRTEQLMDEEIDQFLSFEEWRKLNLEKSGQSEKDLIPRQQQQNDLHQNMKRPAQYDGNFIGDELEIEMDLFKRSSDGKESNDPKSEGKLYKTRFNYASFDCAATIVKSNSHAKGVSNILSENKDSYLINKCSESNKFFIIELCQDILVDQVSMANYEFFSSMFRRIRISVADRFPAPESSWKVLGEFEAQSVRDIQSFDITNPLIWARYLRVEVLSHWGHEYYCPVSLVRVHGTTMMDEYKNQDGAERDKKADDDRATPVVDNKSNAVSFPESLHSTLNRYSSPIPSSIDDIVSTTSVFVAKTLEPNAYSIDSLSQLSSPEPSVGSEHRSVEAVDPDESNSGICEPGYKSIENTYDQLRVFYPGHLISPLVLNESCQWDDYMNNHSIQLQNGNASSDSIIQASESVVQHDVTTPSTPKTQDSIYQTIMKRLSLLESNTTLSLQYVEMQSQSLRELLVKIEKRQSTRIENFFEEFNRTVTEQIRSFQFQYSRLLLSTVDEMEAQRHRTEEDVLSLSTRLSLIADELVYQKKLSIAQAVILLVVLIFVIATRTTPIDSSLAMAVHGNQAGIRDLWKLSNSMRSPTRVLSPKRNFDRSHHRVASTSSAEWYDEVYSDRDYENTENLTQHLASNSTTPRNKHRQVNEFPFPTFSSSPRPRSLQDMNFNDSETDNDTLSPN
SIO_010081: AWJ20_5001
subclass of: SO_0000673
so part of: AWJ20_5001
location: 1205530..1208049
location: region:1205530-1208049:1
so has part: feature:1205530-1208049:1:exon

XP_018736522.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1205530-1208049:1:exon

AWJ20_5002
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SPF1
locus tag: AWJ20_5002
so part of: sequence
location: complement(<1208183..>1211647)
location: region:1208183-1211647:-1
so has part: feature:1208183-1211647:-1:exon
subclass of: SO_0000010

30037197
type: Gene
SIO_000068: ncbigene

position:1208183:-1
position: 1208183
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1211647:-1
position: 1211647
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1208183-1211647:-1:exon

AWJ20_5002
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SPF1
locus tag: AWJ20_5002
product: ion-transporting P-type ATPase SPF1
transcript id: XM_018882114.1
SIO_010081: AWJ20_5002
subclass of: SO_0000673
so part of: AWJ20_5002
location: complement(<1208183..>1211647)
location: region:1208183-1211647:-1
so has part: feature:1208183-1211647:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1208183-1211647:-1:exon

AWJ20_5002
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SPF1
locus tag: AWJ20_5002
inference: similar to AA sequence:KEGG_Orthology:K14950
note: P-type ATPase, ion transporter of the ER membrane; required to maintain normal lipid composition of intracellular compartments and proper targeting of mitochondrial outer membrane tail-anchored proteins; involved in ER function and Ca2+ homeostasis; required for regulating Hmg2p degradation; confers sensitivity to a killer toxin (SMKT) produced by Pichia farinosa KK1; GO_component: GO:0005801 - cis-Golgi network [Evidence IDA] [PMID 11791712]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 12058017]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 22745129]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [Evidence IDA] [PMID 12058017]; GO_function: GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [Evidence IDA] [PMID 22745129]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006874 - cellular calcium ion homeostasis [Evidence IMP] [PMID 12058017]; GO_process: GO:0030026 - cellular manganese ion homeostasis [Evidence IMP] [PMID 24392018]; GO_process: GO:0008152 - metabo…
codon start: 1
product: ion-transporting P-type ATPase SPF1
translation: MSVQALLALMPFWNVEIKKKFTTKPAETIEKASLIRLIPVPNSGAPEICKIQKIDTADHQEVSFLFQKRRYIYDDKTKSFSPPKFAIDESDIKLGSFQTTKGISGGKAKIDDLIRKYGPNKFDIPVPTFSELWLEHAVAPFFVFQMFCVALWFMDELWYYSLFSLFMLVAFESTVVFQRQKTMAEFRGMGIQPYDIHVYRDNKWVEIQTDGLLPGDLVSVTRTKEDSGLPCDLILINGSAIVNEAMLSGESTPLLKESIQLRPSEEKLDTDSLDKNSLLFGGTKVLQTTEVLNSHVPLPPDGGALAVVTRTGFETSQGSLVRVMIFSTERVGAGNKEAYFFILFLLVFAIAASWYVWTEGVKVDRKRSKLLLDCVLIITSVVPPELPMELTMAVNASLAALGKFYIYCTEPFRIPFAGRVDVCCFDKTGTLTNEDLVVEGIAGLVPGDIRGLTEISNIPQQSALVLASAHALVLLDDGEVVGDPMEKTTLNGIGWIVEKKDRVRSKTNPSDKLHILRRFQFSSALKRSSSIANVDGKTLVAVKGAPETLRKMITKLPEDYEETYKSFTRTGSRVLAFAYKYLEPNMSESKVTALVRENVESDLIFAGFLVFHCPLKEDAVKTVKMLNESSHRVVMITGDNPLTAVHVANEVAIVEREVLILDAPEEAHGLHNELVWRSVDEKTIIPVKPSEPLDIGIFENYDLCVTGYALAKLTDHEHIVDLIRHTWVYARVSPSQKEFILTTLKEAGYTTLMCGDGTNDVGALKQAHVGVALLNGTEEGMKKIAENNKINALQKIYEKQADLMRKWNQPPPPIPQAIAHLYPPGPKNPHYVKAIQARGGVVDEKLLAEIEQAQKRELAANKSAALADKITAMMEEDDENDPPALKLGDASVAAPFTSKLGNVSAITHIIRQGRCTLVATIQMYKILALNCLISAYSLSVLYLAGIKIGDGQATISGILLSVCFLSISRAKAIDELSKQRPQPGIFNFYIMGSILGQFAIHIATLIYITNTVYKLEPRDSNIDLEAEFKPSLLNTAIYLLQLAQQISTFAVNYQGRPFRDSISENRGMYWGLLGVGALALSGATEFIPEMNEGLKLVPMSSVFKFQLSTTMLLDLGGSWLIEIVLKHFFMDSKPADIALRYHERPGTLIQKKNQ
SIO_010081: AWJ20_5002
subclass of: SO_0000673
so part of: AWJ20_5002
location: complement(1208183..1211647)
location: region:1208183-1211647:-1
so has part: feature:1208183-1211647:-1:exon

XP_018736523.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1208183-1211647:-1:exon

AWJ20_5003
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_5003
so part of: sequence
location: <1212590..>1213033
location: region:1212590-1213033:1
so has part: feature:1212590-1213033:1:exon
subclass of: SO_0000010

30037198
type: Gene
SIO_000068: ncbigene

position:1212590:1
position: 1212590
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1213033:1
position: 1213033
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1212590-1213033:1:exon

AWJ20_5003
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_5003
product: hypothetical protein
transcript id: XM_018882115.1
SIO_010081: AWJ20_5003
subclass of: SO_0000673
so part of: AWJ20_5003
location: <1212590..>1213033
location: region:1212590-1213033:1
so has part: feature:1212590-1213033:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1212590-1213033:1:exon

AWJ20_5003
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_5003
inference: similar to AA sequence:KEGG_Orthology:K18064
codon start: 1
product: hypothetical protein
translation: MSGIPPAVQEWLDKYPEPNNKTLRYVDKSEVAEAIRRGSTDFLIIDLRKDDFVGGKIKGAYNIPAQSIYNSVEDLYKLAEDSGKKTIYVHCRSSRDRATRTAGYFNDVADNNGNTITTKIIRGGILDWVSGGPEYTQLLDEYDSTKF
SIO_010081: AWJ20_5003
subclass of: SO_0000673
so part of: AWJ20_5003
location: 1212590..1213033
location: region:1212590-1213033:1
so has part: feature:1212590-1213033:1:exon

XP_018736524.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1212590-1213033:1:exon

AWJ20_5004
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: POP7
locus tag: AWJ20_5004
so part of: sequence
location: <1214219..>1214854
location: region:1214219-1214854:1
so has part: feature:1214219-1214854:1:exon
subclass of: SO_0000010

30037199
type: Gene
SIO_000068: ncbigene

position:1214219:1
position: 1214219
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1214854:1
position: 1214854
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1214219-1214854:1:exon

AWJ20_5004
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: POP7
locus tag: AWJ20_5004
product: Pop7p
transcript id: XM_018882116.1
SIO_010081: AWJ20_5004
subclass of: SO_0000673
so part of: AWJ20_5004
location: <1214219..>1214854
location: region:1214219-1214854:1
so has part: feature:1214219-1214854:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1214219-1214854:1:exon

AWJ20_5004
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: POP7
locus tag: AWJ20_5004
inference: similar to AA sequence:KEGG_Orthology:K14526
note: Subunit of both RNase MRP and nuclear RNase P; forms a soluble heterodimer with Pop6p that binds P3 domain of RNase MRP and RNase P RNAs; RNase MRP cleaves pre-rRNA, while nuclear RNase P cleaves tRNA precursors to generate mature 5' ends and facilitates turnover of nuclear RNAs; GO_component: GO:0005655 - nucleolar ribonuclease P complex [Evidence IDA] [PMID 9618478]; GO_component: GO:0005655 - nucleolar ribonuclease P complex [Evidence IDA] [PMID 9620854]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0000172 - ribonuclease MRP complex [Evidence IPI] [PMID 17881380]; GO_component: GO:0000172 - ribonuclease MRP complex [Evidence IMP] [PMID 9618478]; GO_component: GO:0000172 - ribonuclease MRP complex [Evidence IDA] [PMID 9620854]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000171 - ribonuclease MRP activity [Evidence IDA,IMP] [PMID 9620854]; GO_function: GO:0004526 - ribonuclease P activity [Evidence IEA]; GO_function: GO:0004526 - ribonuclease P activity [Evidence IDA,IMP] [PMID 9620854]; GO_process: GO:0090501 - RNA phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA]; GO_process: GO:0034965 - intronic box C/D snoRNA processing [Evidence IDA] [PMID 18713869]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA] [PMID 14729943]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 9618478]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 9620854]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0008033 - tRNA processing [Evidence IMP] [PMID 9618478]; GO_process: GO:0008033 - tRNA processing [Evidence IMP] [PMID 9620854]
codon start: 1
product: Pop7p
translation: MVYSPSWPSESESEISVTNNSTKSKIQIADSKEVMSVFSNLAAKKQKRRGKGKGKEIKASKPDITQSNKSINKESLPSLRPEISTKITKRPPPKLVKELKQPAVYVSTKTPFVSGLKRVSKHISDVQKLGTKDSIKKNELHVTVYGLGKAIDKALAIGLNFMNQYSRVEVLTGTVNVVDESNEDDENGIPKINKRKTSKVEIKIYVWSQHE
SIO_010081: AWJ20_5004
subclass of: SO_0000673
so part of: AWJ20_5004
location: 1214219..1214854
location: region:1214219-1214854:1
so has part: feature:1214219-1214854:1:exon

XP_018736525.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1214219-1214854:1:exon

AWJ20_5005
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_5005
so part of: sequence
location: <1217159..>1219153
location: region:1217159-1219153:1
so has part: feature:1217159-1219153:1:exon
subclass of: SO_0000010

30037200
type: Gene
SIO_000068: ncbigene

position:1217159:1
position: 1217159
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1219153:1
position: 1219153
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1217159-1219153:1:exon

AWJ20_5005
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_5005
product: transcriptional activator xlnR
transcript id: XM_018882117.1
SIO_010081: AWJ20_5005
subclass of: SO_0000673
so part of: AWJ20_5005
location: <1217159..>1219153
location: region:1217159-1219153:1
so has part: feature:1217159-1219153:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1217159-1219153:1:exon

AWJ20_5005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_5005
note: XP_962611|transcriptional activator xlnR [Neurospora crassa OR74A]
codon start: 1
product: transcriptional activator xlnR
translation: MVSPDLTYPSQNSKRARISRACDQCRASRTKCDGVQPCKRCSALSKSCEYFLQRKKRGRGSELYSFKRNNHDNSGKNLPLPVTDSVEGYSFDGYNGKPMNNVDQTSKISQVPFAGEVVPVESVNPHLMSAASSSLPVTDLDLSGLTEPDQDSTDKHPSTYLFDFLPTMTSPRWLNMSTLFPTELFATSHSLRNFSDTTIQYPVLLPILPDLDFIQPELINDLIEVYFSNSVYGIAPIIRKSSLLSHHNPRKCTPALLFSFLLVSAHATDHPLIKSTASTREQITSRLSDLVISHMKALHSGGTLDDVITYIHLGILASMSEFKGAAMRWWHAAWGLARLLKFNQECPALDEEKREEQRRTWWLLFLTDRHLSLCYNQMPSTLDSESCDLYLPVNEKRWSSDEPLVPAESDTSRQKGPVFKVYDSGLFGMYLPLMTLLGGILDLHFLQMNQTLAVNDDVLEMLRTRFSARLNDFETSIEVFSSQIPDNGVGAYVKAWKEYCHCLVHIFHILVQGYLDPIDLLNSIDDLIGTPVFKKCVDHAIAAAKSIDSVLIFDPDLRLIPYFFGIQLLQAGFVLLCLADKLGTETSKEVRDACETLVHGHEVCIVTLNTEYQRNFRSILRSAIRPTVLPGMDGVTTELDEARHRRREVLGLYRWCSGGTGLAI
SIO_010081: AWJ20_5005
subclass of: SO_0000673
so part of: AWJ20_5005
location: 1217159..1219153
location: region:1217159-1219153:1
so has part: feature:1217159-1219153:1:exon

XP_018736526.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1217159-1219153:1:exon

AWJ20_5006
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_5006
so part of: sequence
location: <1219535..>1220914
location: region:1219535-1220914:1
so has part: feature:1219535-1220914:1:exon
subclass of: SO_0000010

30037201
type: Gene
SIO_000068: ncbigene

position:1219535:1
position: 1219535
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1220914:1
position: 1220914
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1219535-1220914:1:exon

AWJ20_5006
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_5006
product: hypothetical protein
transcript id: XM_018882118.1
SIO_010081: AWJ20_5006
subclass of: SO_0000673
so part of: AWJ20_5006
location: <1219535..>1220914
location: region:1219535-1220914:1
so has part: feature:1219535-1220914:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1219535-1220914:1:exon

AWJ20_5006
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_5006
codon start: 1
product: hypothetical protein
translation: MARPQDGSSESSTTPPARSLDLERLDMPYLHRPESVKSSSSLQRRTTGGPQSPIFSASSSSLPPQDKRDSRGSLEGRTGYSISGPRASMDISSRRIRDTSHPIRRDSAVSVGTVSSVASARAPVPQINSEVDLSIVSRKLPQEDDFDEEEDILEFRLNNANSGIIKYRDSTEDGVPELVRYSTSSRNKNGSKPDLRENLDEICTTNSGSFEGLEDPSSIVQPVGKSTAAESETVQTQQVSEAMFSQSLDPHNAQTRDPTLPSEFSHQSALISEFAHLNEPHESKVGDGLSEDEESGWQDMKIIGSYEVYDDKGQVVVHKSADFDNEVDPQATLTRETLGHASAATGYTRVAMDDDAKSVNSMDENTDFLFGEDDLERNPLSQLQATKDMLTDSQKIAYIGLCRLVMNGMAVDLLQLKGARQVATALTNSHESMAMWGQKMMIRLYAHMDIGPEGKSVAW
SIO_010081: AWJ20_5006
subclass of: SO_0000673
so part of: AWJ20_5006
location: 1219535..1220914
location: region:1219535-1220914:1
so has part: feature:1219535-1220914:1:exon

XP_018736527.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1219535-1220914:1:exon

AWJ20_5007
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_5007
so part of: sequence
location: <1220963..>1223227
location: region:1220963-1223227:1
so has part: feature:1220963-1223227:1:exon
subclass of: SO_0000010

30037202
type: Gene
SIO_000068: ncbigene

position:1220963:1
position: 1220963
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1223227:1
position: 1223227
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1220963-1223227:1:exon

AWJ20_5007
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_5007
product: hypothetical protein
transcript id: XM_018882119.1
SIO_010081: AWJ20_5007
subclass of: SO_0000673
so part of: AWJ20_5007
location: <1220963..>1223227
location: region:1220963-1223227:1
so has part: feature:1220963-1223227:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1220963-1223227:1:exon

AWJ20_5007
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_5007
codon start: 1
product: hypothetical protein
translation: MIEQLSQHGVLPSDLSPSLLKTARVKNPMAKGAHGTKIIAETGNESENNNIKASDMNVQRAEDLKDLQTLDIDIRWTILCDLFLVLISDSVYDSRSRTLFQKVGKELGVSELEIAQFESKVTDALEIEEGSIQTWDESEIMEARRKLALKKKYMYVGLATLGGGLVIGLSAGLLAPVIGAGLAAGFTTIGITGTTGFLAGAGGAAVVTTTGAAIGARIGSKGMSKRMGHVKTFEFRPLHNHKRVNAIITVSGWMLGKEDDVRLPFSTVDPIMGDILSVLWEPEMLQSMGQTINILATEVLTQSIQQILGSTVLVALMASIQLPMVLSKLGYLLDNPWSVSLDRAWSSGLILADTLINRNLGVRPVTLVGFSLGARVIYSCLVELARRGAFGLVEDVFIFGAPVVVKRSQFLLARSVVSGRFLNGYSRKDWILGYLFRATSGGLGRVAGLAPIENVPTIENYDNTELVDGHMGYRKAIPKLLRNCGWEVLSEEFTEIEDPDPDKLREKQRELIVEFDQARRQMEEEAKNQKKASGKSKLFSWMKPKKKEWWEMADKDANTTSEASENAPPQADDQMSDVIFDLDAIKQEVKNLEQVEQVKDNAKVADTIQVNSSYTEFEEYDPGQLNGEGEDVQMTFDAFEDDEVERNGGKPVYGSQSTTTLPNQDSYAQHSPHSSSLQFGAREAESQLEPKGNSDVTSHEPAPVESSRPKADRVSLESTSQDNKDVNTTANINTRYPEYEDEIPDENNIVMTFD
SIO_010081: AWJ20_5007
subclass of: SO_0000673
so part of: AWJ20_5007
location: 1220963..1223227
location: region:1220963-1223227:1
so has part: feature:1220963-1223227:1:exon

XP_018736528.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1220963-1223227:1:exon

AWJ20_5008
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_5008
so part of: sequence
location: complement(<1223272..>1224567)
location: region:1223272-1224567:-1
so has part: feature:1223272-1224567:-1:exon
subclass of: SO_0000010

30037203
type: Gene
SIO_000068: ncbigene

position:1223272:-1
position: 1223272
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1224567:-1
position: 1224567
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1223272-1224567:-1:exon

AWJ20_5008
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_5008
product: hypothetical protein
transcript id: XM_018882120.1
SIO_010081: AWJ20_5008
subclass of: SO_0000673
so part of: AWJ20_5008
location: complement(<1223272..>1224567)
location: region:1223272-1224567:-1
so has part: feature:1223272-1224567:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1223272-1224567:-1:exon

AWJ20_5008
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_5008
codon start: 1
product: hypothetical protein
translation: MGGLSIEDLEFFDKRNVLNSSKNDGFHLTPNVLEGDTKAPNDDDEDEGFGEFVEYDDAIKPQTKPDFHKPEIQDIYPDDVNISSMLSINNSYQNQPSVQKPHLQPDLLGLSDFVPSPTQTVESEVHISSPPKPQDPSSWDTPKTKTNSISIENEATQLSAFSSSMRFGQHLENKSGVTKVTEPTTLDQWNNILSALPGPSEPSTQQNKELRPEVKDTSLAPSNPSNKVAISRPLVPEKEQFQEEESLEVFDDFDEFSKASNIPSPNVLLAYFQTNVFASLNNFLNDLISISYLQKKRTIARPESKQFLSGFFEAVAIAGRIMTGRSRTAIDAAQLALADKESRELARIWKEELSVRLRSLLTTSMISDIPSLDARLTVSSKSVPGKEYCPICGLSRTELVKGSPRPEWDPNAKGHKSCLAFWDKRSTFGIE
SIO_010081: AWJ20_5008
subclass of: SO_0000673
so part of: AWJ20_5008
location: complement(1223272..1224567)
location: region:1223272-1224567:-1
so has part: feature:1223272-1224567:-1:exon

XP_018736529.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1223272-1224567:-1:exon

AWJ20_5009
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RPD3
locus tag: AWJ20_5009
so part of: sequence
location: complement(<1226117..>1227433)
location: region:1226117-1227433:-1
so has part: feature:1226117-1227433:-1:exon
subclass of: SO_0000010

30037204
type: Gene
SIO_000068: ncbigene

position:1226117:-1
position: 1226117
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1227433:-1
position: 1227433
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1226117-1227433:-1:exon

AWJ20_5009
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RPD3
locus tag: AWJ20_5009
product: histone deacetylase RPD3
transcript id: XM_018882121.1
SIO_010081: AWJ20_5009
subclass of: SO_0000673
so part of: AWJ20_5009
location: complement(<1226117..>1227433)
location: region:1226117-1227433:-1
so has part: feature:1226117-1227433:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1226117-1227433:-1:exon

AWJ20_5009
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RPD3
locus tag: AWJ20_5009
inference: similar to AA sequence:KEGG_Orthology:K06067
codon start: 1
product: histone deacetylase RPD3
translation: MAHSLIMNYGLYKHMEIYVSLGPFKTRRRVHLFDRFNSNNLKRAKPATKQEMCQFHTDEYVDFLSRVTPDNMELFAKEQVKFNVGDDCPVFDGLFEFCGISGGGSMEGAARLNREKCDIAVNWAGGLHHAKKSEASGFCYLNDIVLGIIELLRYHARVLYIDIDVHHGDGVEEAFYTTDRVMTCSFHKYGEFFPGTGELRDIGVGKGKNYAVNFPFRDGIDDRSYKSVFEPVISAIMEWYQPGAVVLQCGGDSLSGDRLGCFNLSMHGHANCVNFVKSFGKPTLVLGGGGYTMRNVSRTWAFETGLLVGKELGPEIPYNDYYEYYGPDYRLEVRPSNMQNANSPDYLKKILDQVLQNLSRTKFAPSVQMQDVPRDAPDEGDVEEDTEAAKETRGGSQFAHDERVEAGNEFYDDEDSTGGKKVSSTNYKEVDGDTSMQL
SIO_010081: AWJ20_5009
subclass of: SO_0000673
so part of: AWJ20_5009
location: complement(1226117..1227433)
location: region:1226117-1227433:-1
so has part: feature:1226117-1227433:-1:exon

XP_018736530.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1226117-1227433:-1:exon

AWJ20_5010
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_5010
so part of: sequence
location: <1228442..>1228822
location: region:1228442-1228822:1
so has part: feature:1228442-1228822:1:exon
subclass of: SO_0000010

30037206
type: Gene
SIO_000068: ncbigene

position:1228442:1
position: 1228442
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1228822:1
position: 1228822
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1228442-1228822:1:exon

AWJ20_5010
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_5010
product: hypothetical protein
transcript id: XM_018882123.1
SIO_010081: AWJ20_5010
subclass of: SO_0000673
so part of: AWJ20_5010
location: <1228442..>1228822
location: region:1228442-1228822:1
so has part: feature:1228442-1228822:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1228442-1228822:1:exon

AWJ20_5010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_5010
inference: similar to AA sequence:KEGG_Orthology:K03949
codon start: 1
product: hypothetical protein
translation: MCTVFHVTNTSLDPTGITGIWQHPNPRPALVKVYEHTLSLLSSKFPTESVYRQSVENLTKARKQIVEENEVGEVIEQKIGAGLIEEILEQAAEEFRLAEYLADQKPWEELEVKPSEDQWKYFDRSE
SIO_010081: AWJ20_5010
subclass of: SO_0000673
so part of: AWJ20_5010
location: 1228442..1228822
location: region:1228442-1228822:1
so has part: feature:1228442-1228822:1:exon

XP_018736531.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1228442-1228822:1:exon

AWJ20_5011
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SEC4
locus tag: AWJ20_5011
so part of: sequence
location: complement(<1229137..>1229757)
location: region:1229137-1229757:-1
so has part: feature:1229137-1229757:-1:exon
subclass of: SO_0000010

30037207
type: Gene
SIO_000068: ncbigene

position:1229137:-1
position: 1229137
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1229757:-1
position: 1229757
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1229137-1229757:-1:exon

AWJ20_5011
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SEC4
locus tag: AWJ20_5011
product: Rab family GTPase SEC4
transcript id: XM_018882124.1
SIO_010081: AWJ20_5011
subclass of: SO_0000673
so part of: AWJ20_5011
location: complement(<1229137..>1229757)
location: region:1229137-1229757:-1
so has part: feature:1229137-1229757:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1229137-1229757:-1:exon

AWJ20_5011
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SEC4
locus tag: AWJ20_5011
inference: similar to AA sequence:KEGG_Orthology:K07901
note: Rab family GTPase; essential for vesicle-mediated exocytic secretion and autophagy; associates with the exocyst component Sec15p and may regulate polarized delivery of transport vesicles to the exocyst at the plasma membrane; GO_component: GO:0030478 - actin cap [Evidence TAS] [PMID 10652251]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 9128251]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0030133 - transport vesicle [Evidence TAS] [PMID 12665530]; GO_component: GO:0030133 - transport vesicle [Evidence IDA] [PMID 23079598]; GO_component: GO:0030658 - transport vesicle membrane [Evidence IEA]; GO_component: GO:0031982 - vesicle [Evidence IDA] [PMID 12456647]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IDA] [PMID 2111819]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 2111819]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IMP] [PMID 9017592]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IMP] [PMID 9425151]; GO_process: GO:0006914 - autophagy [Evidence IGI,IMP] [PMID 20444978]; GO_process: GO:0007121 - bipolar cellular bud site selection [Evidence TAS] [PMID 10652251]; GO_process: GO:0006887 - exocytosis [Evidence IEA]; GO_process: GO:0006887 - exocytosis [Evidence IDA] [PMID 15772160]; GO_process: GO:0007107 - membrane addition at site of cytok…
codon start: 1
product: Rab family GTPase SEC4
translation: MSTTRTYDLLIKLLLIGDSGVGKSCLLLRFCDDQFTPSFITTIGIDFKIRTINLDDKRVKLQVWDTAGQERFKTITTAYYRGAMGILLVYDVCNEKSFENIRSWYSNVEQHASENVVLILVGNKSDMSEKRVISPEQGQALADELGIPFIEASAKTNDNVEDTFFSLARRVKQTMFSDNADANGATTGGSVNVGSANNSGTGGKCC
SIO_010081: AWJ20_5011
subclass of: SO_0000673
so part of: AWJ20_5011
location: complement(1229137..1229757)
location: region:1229137-1229757:-1
so has part: feature:1229137-1229757:-1:exon