Sugiyamaella lignohabitans strain CBS 10342 chromosome C, complete sequence.
type: Entry
definition: Sugiyamaella lignohabitans strain CBS 10342 chromosome C, complete sequence.
sequence version: NC_031671.1
sequence date: 2016-10-25
sequence: sequence
division: CON
label: NC_031671.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA342695
dblink: SAMN04417247
keyword: RefSeq
source: Sugiyamaella lignohabitans
organism: Sugiyamaella lignohabitans
taxonomy: Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Trichomonascaceae; Sugiyamaella.
reference: 1
reference: 2
reference: 3
comment: PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CP014500.\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000340
sequence length: 2773601
topology: linear
so has quality: SO_0000987
location: 1..2773601
location: region:1-2773601:1
RO_0002162: 796027

NC_031671
type: RefSeq
SIO_000068: refseq

PRJNA342695
type: BioProject
SIO_000068: bioproject

SAMN04417247
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence and transcriptome regulation of the pentose utilising yeast Sugiyamaella lignohabitans
author: Bellasio, M.
author: Peymann, A.
author: Valli, M.
author: Sipitzky, M.
author: Graf, A.
author: Sauer, M.
author: Marx, H.
author: Mattanovich, D.
journal: Unpublished

2
title: Direct Submission
journal: Submitted (25-OCT-2016) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Peymann, A.
author: Graf, A.
journal: Submitted (18-FEB-2016) Department of Biotechnology, University of Natural Resources and Life Sciences, Muthgasse 18, Vienna, Vienna 1190, Austria

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2773601:1
position: 2773601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-2773601:1:source
so part of: sequence
organism: Sugiyamaella lignohabitans
mol type: genomic DNA
strain: CBS 10342
chromosome: C

796027
type: Taxonomy
SIO_000068: taxonomy

AWJ20_3707
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RIP1
locus tag: AWJ20_3707
so part of: sequence
location: <2548..>3243
location: region:2548-3243:1
so has part: feature:2548-3243:1:exon
subclass of: SO_0000010

30035758
type: Gene
SIO_000068: ncbigene

position:2548:1
position: 2548
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:3243:1
position: 3243
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2548-3243:1:exon

AWJ20_3707
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RIP1
locus tag: AWJ20_3707
product: ubiquinol--cytochrome-c reductase catalytic subunit RIP1
transcript id: XM_018880729.1
SIO_010081: AWJ20_3707
subclass of: SO_0000673
so part of: AWJ20_3707
location: <2548..>3243
location: region:2548-3243:1
so has part: feature:2548-3243:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2548-3243:1:exon

AWJ20_3707
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RIP1
locus tag: AWJ20_3707
inference: similar to AA sequence:KEGG_Orthology:K00411
note: Ubiquinol-cytochrome-c reductase; a Rieske iron-sulfur protein of the mitochondrial cytochrome bc1 complex; transfers electrons from ubiquinol to cytochrome c1 during respiration; during import, Rip1p is first imported into the mitochondrial matrix where it is processed, acquires its Fe-S cluster, and is folded, then is translocated into the inner membrane by the action of a homo-oligomer of Bcs1p, and finally is delivered by Bcs1p to Complex III for assembly; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005750 - mitochondrial respiratory chain complex III [Evidence IDA] [PMID 10873857]; GO_component: GO:0005750 - mitochondrial respiratory chain complex III [Evidence IDA] [PMID 3036836]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IPI] [PMID 16962558]; GO_component: GO:0070469 - respiratory chain [Evidence IEA]; GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016679 - oxidoreductase activity, acting on diphenols and related substances as donors [Evidence IEA]; GO_function: GO:0008121 - ubiquinol-cytochrome-c reductase activity [Evidence IEA,IEA]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 3036836]; GO_process: GO:1902600 - hydrogen ion transmembrane transport [Evidence IEA,IEA]; GO_process: GO:0006122 - mitochondrial electron transport, ubiquinol to cytochrome c [Evidence IDA] [PMID 3036836]; GO_process: GO:0055114 - oxidation-redu…
codon start: 1
product: ubiquinol--cytochrome-c reductase catalytic subunit RIP1
translation: MNTLLRATSSAARAALRTSQQSSAFAMASGSSRFVSNNNKPVGGASSYKVPDFTPYMKENRNEDSNRAFSYFMVGTMGVISAAAARATVQDFLTTMSASADVLALAKVEVALGNIPEGKNIIVKWRGKPVFIRHRTPAEIHEANEVNVASLRDPQTDDQRVKMPEWLVMVGICTHLGCVPIGESGDYGGWFCPCHGSHYDISGRIRKGPAPLNLEIPEYEFIDNNEKVVIG
SIO_010081: AWJ20_3707
subclass of: SO_0000673
so part of: AWJ20_3707
location: 2548..3243
location: region:2548-3243:1
so has part: feature:2548-3243:1:exon

XP_018733390.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2548-3243:1:exon

AWJ20_3708
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: STE11
locus tag: AWJ20_3708
so part of: sequence
location: <4851..>7451
location: region:4851-7451:1
so has part: feature:4851-7451:1:exon
subclass of: SO_0000010

30035759
type: Gene
SIO_000068: ncbigene

position:4851:1
position: 4851
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:7451:1
position: 7451
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4851-7451:1:exon

AWJ20_3708
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: STE11
locus tag: AWJ20_3708
product: mitogen-activated protein kinase kinase kinase STE11
transcript id: XM_018880730.1
SIO_010081: AWJ20_3708
subclass of: SO_0000673
so part of: AWJ20_3708
location: <4851..>7451
location: region:4851-7451:1
so has part: feature:4851-7451:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4851-7451:1:exon

AWJ20_3708
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: STE11
locus tag: AWJ20_3708
inference: similar to AA sequence:KEGG_Orthology:K11228
codon start: 1
product: mitogen-activated protein kinase kinase kinase STE11
translation: MLTNRTWSSTDIKQWLESLHCGEYFQSFEDNHITGDVLLECDQTALKYMGIRKVGDRIKINQSLKELRSDYVKSLAEARGHSLFRYGPQSLEDLNRNSVSPFAALSSSQPSKPEHSTPAEGYFSPKHSSSAGPGSALGILSGLSLGVPPNSSSSSRFPFRRTAPNSAKSQYSTATTTTTVLSKTDSNGVQEIFSMDVVKQNNVKFIYPQGESKTVNIAGCTTADEIKRKALQKIMADNVVNPVEWIVFVLLEDKFRHLGDVELMSIAQSSDSSERKRLMLCAIGTSPSTKQLEKSKQIQVNSHLKLSSLSNIDSADSIAQATKPESKSISTNRLSLAQSIAATSYDDDDLDDDDLEQDGASVTANARPRKVGRLSEHRPPSELISSNLAHFFPSAPANDLEETIRNSRRFSKRMSRMSRISHRMSVASSTWGIPEDEEAPPPVPALPDHGEQGTIMPGSLPSPYTSTTPTIPKPTTPTTAPVPTTEAPAAPEAKRPSLRSSIRKSVMPRRYSSYESGNTNMLTALSNRISTMSLSKGGFSKSHNGGSEDQIHDGPTSDNEPETDANQEQHAPEVEDEDDEEDDNTFLDTVRKEESCPSKWIKGRLIGSGSFGTVYLGMNSFTGELMAVKQVEIPTEDTENGQRKKSMVDALQREMNLLRELQHKNIVQYLGSNSEGQFLNIFLEYVPGGSVAMLLSNYGIFEESLIRNFVRQILEGLKYLHGQNIIHRDIKGANVLVDNKGCIKISDFGISKKIETKLLTNNRVSLQGSVFWMAPEVVKQLPYTLKADIWSLGCLIVEMFSGTHPFPEFTQMQVIFRLGNSGTPAIPDDCSDDAKDFLAKTFAIDHQKRPTAAELLSHKFMDPIPQ
SIO_010081: AWJ20_3708
subclass of: SO_0000673
so part of: AWJ20_3708
location: 4851..7451
location: region:4851-7451:1
so has part: feature:4851-7451:1:exon

XP_018733391.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4851-7451:1:exon

AWJ20_3709
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3709
so part of: sequence
location: complement(<7585..>9435)
location: region:7585-9435:-1
so has part: feature:7585-9435:-1:exon
subclass of: SO_0000010

30035760
type: Gene
SIO_000068: ncbigene

position:7585:-1
position: 7585
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:9435:-1
position: 9435
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7585-9435:-1:exon

AWJ20_3709
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3709
product: hypothetical protein
transcript id: XM_018880731.1
SIO_010081: AWJ20_3709
subclass of: SO_0000673
so part of: AWJ20_3709
location: complement(<7585..>9435)
location: region:7585-9435:-1
so has part: feature:7585-9435:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7585-9435:-1:exon

AWJ20_3709
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3709
codon start: 1
product: hypothetical protein
translation: MNTDKTGGSTVYGPDHPDSQHYEDSDSAMATAIQQSIDSSNNNFKAVEGNYYQKYGEQESGELQKFGPATRESYDSKQWGIVPYSEASSSTSTVAAGLQQAQGSTTPIIYEFRNGIPIVLPADDAIYIAPLMMIIHSIPLGRKALLNGGVDLVPDYGFDPLWWLGEKLIDLQDGPIHNRERLMIEIQRYTAFLDGESRRPCALIAGVISEAGPRASKLILKSNSQDEKPIGRFLQDLVKFWGPDSEFANVFQSTAMQERPSSFEEEDGEVIQKFTNLVTDVTVALQQSIYDFIDDLMSADGGAPTTFIKDISDIVNITIKRDDGNSGTGIEIPAIWYPDRYSEEYFECVNLLHRRRTEFRKQLTDLNARRLEISSTKGKDISKLLNISYDYIKEISEKASDEDKENFSLVEKELADVKNLYKHRKESIVEQVTQTQQIMLREANLFKGLLSDEDKKYLAEIYPAAQSLPAMRPYRLRGLIISPTEFCFLRSQPADDDVDLVDLGNDGDSEKSFRDPTWTKIVWGDLSENGSSELYVGQITQQDAINWAKQGSSGYKWQEVVAFYANDYATNVEAHKVALSEGLRKFIQADKQCLEDQVANVKEDEEIKVEHEEKSR
SIO_010081: AWJ20_3709
subclass of: SO_0000673
so part of: AWJ20_3709
location: complement(7585..9435)
location: region:7585-9435:-1
so has part: feature:7585-9435:-1:exon

XP_018733392.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7585-9435:-1:exon

AWJ20_3710
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3710
so part of: sequence
location: complement(<10076..>13597)
location: region:10076-13597:-1
so has part: feature:10076-13597:-1:exon
subclass of: SO_0000010

30035762
type: Gene
SIO_000068: ncbigene

position:10076:-1
position: 10076
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:13597:-1
position: 13597
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10076-13597:-1:exon

AWJ20_3710
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3710
product: hypothetical protein
transcript id: XM_018880733.1
SIO_010081: AWJ20_3710
subclass of: SO_0000673
so part of: AWJ20_3710
location: complement(<10076..>13597)
location: region:10076-13597:-1
so has part: feature:10076-13597:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10076-13597:-1:exon

AWJ20_3710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3710
codon start: 1
product: hypothetical protein
translation: MGEEHGFKNGIDSQTDQPAYSPVEEGAYARPDGSRPGSRNRTEDSTDGDVDSVPDSPSQALADFHDEWSISDPLLIKQAVIFPPSFFNPLRARNHDTEWDKKIAQLRSLLTNDSSLLTSNNRNDSALDHVQLPYAHFIPSPQQSDISQYAVNSQVAQSLLLSPKIKENRFQYSRGLLISYLSRDKRSSTWSDAITTVCCESPSLGTLQPTSKTHDNPINVIPNFPRAFLPPLFIYSAFAIYKDVVFTDTRCVRSRTGLVIAQVVQIMLSVFSAATITSVFFPQFCFSALYSFSALPAIIIMGSIENTLTLINSVSGTRPEISPTSRVAIAAQQAFPKTVKAKLITAFLLSLVIMANLDKVINSIFLFSTLSVLIDLALHVTYFTAVLSVDIRRLELAEVLLNPLDDEEPIVKHDSGTSSIPFFRQYQQLKGFRLRTFLYLNYLNPRQRYPIVMASIVVIHMWLSLAGPLKDTATLQISSHFLDRTILFMNDLLNVHNYTVNIGSDVVPLVIYNPIVLSFDDNSNCFHFSPFLSTTSSIIGGYSLFILFEFVLSLAIILLAAALILKLLLPKRDCAEEDRAGLHSDSENKFSSKDLAGYHTLDVIQIVVNKSWIATVSLDHGICVWNVCDGKRSGSKQDCKFRTLPPRLWPVSRVLVGLNSMLVIISAHNHVIEAWDFKNNKILYSIKDDELFPANSLLLLSFIVADQVVIITRSGAFVTISRTGTKETICPDLTFGRDVELIAATLLVTPKINDKVVCLFSDNSIVVVTHVAGTQWSFRSLDLLESLTAVSERRRGSKDTVFYRPYPAYPPIEIAEASSPSFLVASNMNRASIPCTRPMEMKEKAHSVVSVPAIHMVLVVSELKASLFDVHTGVIVRHFQLGLYKPDTIRVFHAQPTHCRFCGCASIESISVAYYDQEDKGLVICHTVQIENRAKNNICLRVERDPRETRCLGFEAATEQVHWIDRVEGWDTTDINMMMGVRRKENPQSSGSPSPDSGRRSPATGTERRDLSMSATTSVLRRISNKLSQGASSTSSASYSTPQPPTHGQKKPPLNITWEGWAMTGKGKVSYYNIPDVPGKPGSYNIQNLSRDDYIPQASSRLLIRTVGPAVKYGKKSIAVAFGNVIKIMYFGNEEFHDEIIYGNRLVGIPSYESAPPSNTPSASRRWKREIAY
SIO_010081: AWJ20_3710
subclass of: SO_0000673
so part of: AWJ20_3710
location: complement(10076..13597)
location: region:10076-13597:-1
so has part: feature:10076-13597:-1:exon

XP_018733393.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10076-13597:-1:exon

AWJ20_3711
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: YDJ1
locus tag: AWJ20_3711
so part of: sequence
location: <16767..>17999
location: region:16767-17999:1
so has part: feature:16767-17999:1:exon
subclass of: SO_0000010

30035763
type: Gene
SIO_000068: ncbigene

position:16767:1
position: 16767
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:17999:1
position: 17999
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16767-17999:1:exon

AWJ20_3711
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: YDJ1
locus tag: AWJ20_3711
product: type I HSP40 co-chaperone YDJ1
transcript id: XM_018880734.1
SIO_010081: AWJ20_3711
subclass of: SO_0000673
so part of: AWJ20_3711
location: <16767..>17999
location: region:16767-17999:1
so has part: feature:16767-17999:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16767-17999:1:exon

AWJ20_3711
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: YDJ1
locus tag: AWJ20_3711
inference: similar to AA sequence:KEGG_Orthology:K09503
note: Type I HSP40 co-chaperone; involved in regulation of HSP90 and HSP70 functions; critical for determining cell size at Start as a function of growth rate; involved in protein translocation across membranes; member of the DnaJ family; GO_component: GO:0072380 - TRC complex [Evidence IDA] [PMID 20850366]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 1869583]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 8144572]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IEA]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IDA] [PMID 1869583]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 1400408]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 15342786]; GO_function: GO:0031072 - heat shock protein binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 9774392]; GO_process: GO:0006458 - 'de novo' protein folding [Evidence IMP] [PMID 10567418]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 15252059]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IGI,IMP] [PMID 15342786]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0042026 - protein refolding [Evidence IDA] [PMID 9674429]; GO_process: GO:0045047 - protein targeting to ER [Evidence IMP] [PMID 1473150]; GO_process: GO:0006626 - protein targeting to mitochondrion [Evidence IMP] [PMID 1729605]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0009408 - response to heat [Evidence IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006810 - transport [Evidenc…
codon start: 1
product: type I HSP40 co-chaperone YDJ1
translation: MVKDTKLYDILGVSPDATDSQIKKAYRVNALKYHPDKNQHSPEAADKFKEVSSAYEVLSDEQKRQVYDTYGMEGLSGQGGPDMGNAEDLFSHFFGGMGGMGGMGGMFGGGAPSGPRKSKDIMHAIRATLEDLYKGKVSKLALKKTVICKTCDGKGGKEGAVKTCPGCKGQGMKFVTRQMGNVIQRFQTVCPDCNGEGQIIDPKDRCKTCLGKKTTEEKKILQVHIDKGMANGQKIVFQGEGDQGPGIIPGDVIFVVNEQPHEKFERRGDDLLYKVKIDLLTALAGGSFGIKHLDGEWLKVEIIPGEVIAPGSFKLIEGKGMPSYRHHNFGNMIVEFEVEFPKDNFATPEQLAALETVLPPRAKLEIPADVHAEEVILADLDPSKYQSGGAMEEDDDDMHAGGERVQCASQ
SIO_010081: AWJ20_3711
subclass of: SO_0000673
so part of: AWJ20_3711
location: 16767..17999
location: region:16767-17999:1
so has part: feature:16767-17999:1:exon

XP_018733394.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16767-17999:1:exon

AWJ20_3712
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MSG5
locus tag: AWJ20_3712
so part of: sequence
location: complement(<18485..>19930)
location: region:18485-19930:-1
so has part: feature:18485-19930:-1:exon
subclass of: SO_0000010

30035764
type: Gene
SIO_000068: ncbigene

position:18485:-1
position: 18485
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:19930:-1
position: 19930
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18485-19930:-1:exon

AWJ20_3712
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MSG5
locus tag: AWJ20_3712
product: tyrosine/serine/threonine protein phosphatase MSG5
transcript id: XM_018880735.1
SIO_010081: AWJ20_3712
subclass of: SO_0000673
so part of: AWJ20_3712
location: complement(<18485..>19930)
location: region:18485-19930:-1
so has part: feature:18485-19930:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18485-19930:-1:exon

AWJ20_3712
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MSG5
locus tag: AWJ20_3712
inference: similar to AA sequence:KEGG_Orthology:K11240
codon start: 1
product: tyrosine/serine/threonine protein phosphatase MSG5
translation: MKSPHISPPISPNSFSNPKSHRSSTRNRNASSLSISIPISPQKIPPLESATYRRSSGASSFPEYSSGCTGTSSTSTDTCSGAGSGAGSNITPNVVYLDSDSNSIYRASSSSSSTTTTTTLHYQQFPQFSSGSSLPNIGSTEPQNSNSYYYYQQPLKTSTNTNFEVMPAENPYPNGPVLVREPNIYLYSEPSIQTASQFDVIVNVAREVPNPFEQTSRLSKEISSPMAPPPPAPFVKGARSSSSSSSSFTSNLSCSPLSSTSTHTEDTCFSPTGYPENSPPSSVNSTPNLNEELSSENDCEEETDEMTLRDLSSPITQSSTTAAFGLASSESLNGRTTPEYIYVPWDHTSKLTPDLARLTDLISSRSAEGKKILVHCQCGVSRSASLVVAYVMRQDKCDLNTAYDHVKKRSPNISPNMTLMFQLIDWARMLKRNPENPGVSTSLGPSLSSPPSSYDDDLIPSASGYSLASPPPSTPTTAVNH
SIO_010081: AWJ20_3712
subclass of: SO_0000673
so part of: AWJ20_3712
location: complement(18485..19930)
location: region:18485-19930:-1
so has part: feature:18485-19930:-1:exon

XP_018733395.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18485-19930:-1:exon

AWJ20_3713
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MIC26
locus tag: AWJ20_3713
so part of: sequence
location: complement(<23143..>23877)
location: region:23143-23877:-1
so has part: feature:23143-23877:-1:exon
subclass of: SO_0000010

30035765
type: Gene
SIO_000068: ncbigene

position:23143:-1
position: 23143
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:23877:-1
position: 23877
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23143-23877:-1:exon

AWJ20_3713
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MIC26
locus tag: AWJ20_3713
product: Mic26p
transcript id: XM_018880736.1
SIO_010081: AWJ20_3713
subclass of: SO_0000673
so part of: AWJ20_3713
location: complement(<23143..>23877)
location: region:23143-23877:-1
so has part: feature:23143-23877:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23143-23877:-1:exon

AWJ20_3713
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MIC26
locus tag: AWJ20_3713
inference: similar to AA sequence:KEGG_Orthology:K17786
note: Component of the MICOS complex; MICOS (formerly MINOS or MitOS) is a mitochondrial inner membrane complex that extends into the intermembrane space and has a role in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane; Mic26p is a non-essential component of the complex; GO_component: GO:0061617 - MICOS complex [Evidence IDA] [PMID 21944719]; GO_component: GO:0061617 - MICOS complex [Evidence IDA] [PMID 21987634]; GO_component: GO:0061617 - MICOS complex [Evidence IDA] [PMID 22009199]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0044284 - mitochondrial crista junction [Evidence IDA] [PMID 22009199]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0042407 - cristae formation [Evidence IMP] [PMID 21987634]; GO_process: GO:0042407 - cristae formation [Evidence IMP] [PMID 22009199]
codon start: 1
product: Mic26p
translation: MKLLTGQKQLLTLLGAGIVSYSAIPVAMADSKKPIYDDEEKNEETVVVVQPEETQLINTEYVGNTPIKSSKFLEENIEVARKWVYEQSQTVQAKVDDSFQTYLQAERSVTSTVSNLKDENEDILPGGIYILIGALSGSIFARRRGFVLRTVTPVIFGLGAFSYFLPKTFNNTRALVWSFEQKSPAIADTHIQIQNQVESLAESAKSAAEQSQSSLESGVHSVRQFVAESTGLQIGSSSSSNNKK
SIO_010081: AWJ20_3713
subclass of: SO_0000673
so part of: AWJ20_3713
location: complement(23143..23877)
location: region:23143-23877:-1
so has part: feature:23143-23877:-1:exon

XP_018733396.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23143-23877:-1:exon

AWJ20_3714
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: FRE3
locus tag: AWJ20_3714
so part of: sequence
location: complement(<24512..>26161)
location: region:24512-26161:-1
so has part: feature:24512-26161:-1:exon
subclass of: SO_0000010

30035766
type: Gene
SIO_000068: ncbigene

position:24512:-1
position: 24512
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:26161:-1
position: 26161
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24512-26161:-1:exon

AWJ20_3714
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: FRE3
locus tag: AWJ20_3714
product: Fre3p
transcript id: XM_018880737.1
SIO_010081: AWJ20_3714
subclass of: SO_0000673
so part of: AWJ20_3714
location: complement(<24512..>26161)
location: region:24512-26161:-1
so has part: feature:24512-26161:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:24512-26161:-1:exon

AWJ20_3714
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: FRE3
locus tag: AWJ20_3714
note: Ferric reductase; reduces siderophore-bound iron prior to uptake by transporters; expression induced by low iron levels; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 9726978]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 11120744]; GO_function: GO:0052851 - ferric-chelate reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence IGI] [PMID 11120744]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence ISA] [PMID 9726978]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IEP,IMP] [PMID 10341420]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IEP,IMP] [PMID 9726978]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0015891 - siderophore transport [Evidence IMP] [PMID 9726978]
codon start: 1
product: Fre3p
translation: MLAFWGIIILFKSIHNLFHRMGPYVLKYLDFPLSRRLRAEFFLPPTGRYHHSTPKSLLGFTFNIPARIETIIISLFFIQNILLAFVGIETIENSVFYDSMSDQYADSIGYRAGVICMAELVLLIVFAGRNNLLIYITGWEMNTFNVFHKWVARMTAMQAVIHSIGYTIEYVQEDYYTEYFSGEPGTAWFIWGVVATILMCALITHSVHFFRSINYELFLYGHITLTAVAIAGVWLHVIGMEGMNYTYAAIAIWAFDHVARIVRLLWSGVTSKASMKLHGEHILEIKIDYSKRWKFYPGCHVYLHILRTNRFWQSHPFTVVTSPRPDDQGKLVIFARVKKGLTKHTANYLKDKPDQSAQVRVLVEGPYGGRHPLHHYETVVLIAGGVGITSIYPYAAQLRENKDKAQRMVFIWVIRNEQPLSWFQDQLRHISEDPRIEVILFITGSNALVSNEGSATSSTTNLDKSPLESEASSQTEKKSPLVSSSVFDIRAGTPDLRSRVAHDISEAAGTVAFLVCGPNRMNDDVRMGIVDNIADSKHRVDYFEDSFSW
SIO_010081: AWJ20_3714
subclass of: SO_0000673
so part of: AWJ20_3714
location: complement(24512..26161)
location: region:24512-26161:-1
so has part: feature:24512-26161:-1:exon

XP_018733397.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24512-26161:-1:exon

AWJ20_3715
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3715
so part of: sequence
location: <28670..>29821
location: region:28670-29821:1
so has part: feature:28670-29821:1:exon
subclass of: SO_0000010

30035767
type: Gene
SIO_000068: ncbigene

position:28670:1
position: 28670
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:29821:1
position: 29821
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28670-29821:1:exon

AWJ20_3715
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3715
product: hypothetical protein
transcript id: XM_018880738.1
SIO_010081: AWJ20_3715
subclass of: SO_0000673
so part of: AWJ20_3715
location: <28670..>29821
location: region:28670-29821:1
so has part: feature:28670-29821:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:28670-29821:1:exon

AWJ20_3715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3715
codon start: 1
product: hypothetical protein
translation: MSQLFSSSDSCGPVNPLQNLGKHTGPTNSSQHERFVRENSAGPSSFRSTPSPSLVNGTNTDFQAFASRGSPSQSGFNFHPGQGQAASQVPGQLPGQLPVQLARNGAPLDQRNIGFQAPQTTSSDWASEFSKLSVGSRPSQDLRMATSPLSMTAASSSYQQYQPQQPMLRSDLMYYQTSASVSQQPEHHQIHKLNEEQASFENAFAEVERSLNSESISQQDTTIQKETEQVESLQKVNNTELSGVAQDIINSINESSQSTNSSTASKMKSSNFMALMDQLSKKNVVLEGTKFVDGVSGAEISADQLARQEDTANYKEPSLPEHLQPQNMSKAPQIPLQDPFSFINQLNIDPSKSTPFELAQLMSPGVALSDWEEKYEEDPDWTQ
SIO_010081: AWJ20_3715
subclass of: SO_0000673
so part of: AWJ20_3715
location: 28670..29821
location: region:28670-29821:1
so has part: feature:28670-29821:1:exon

XP_018733398.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28670-29821:1:exon

AWJ20_3716
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3716
so part of: sequence
location: complement(<31853..>32113)
location: region:31853-32113:-1
so has part: feature:31853-32113:-1:exon
subclass of: SO_0000010

30035768
type: Gene
SIO_000068: ncbigene

position:31853:-1
position: 31853
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:32113:-1
position: 32113
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31853-32113:-1:exon

AWJ20_3716
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3716
product: hypothetical protein
transcript id: XM_018880739.1
SIO_010081: AWJ20_3716
subclass of: SO_0000673
so part of: AWJ20_3716
location: complement(<31853..>32113)
location: region:31853-32113:-1
so has part: feature:31853-32113:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:31853-32113:-1:exon

AWJ20_3716
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3716
codon start: 1
product: hypothetical protein
translation: MTELARDMILKSQQIEVLIDSLPGIGISEQEQMARVRSLEEELKQVNNEKADVLTEREELLKKCDELILEVAREKVNLEKSQSMHS
SIO_010081: AWJ20_3716
subclass of: SO_0000673
so part of: AWJ20_3716
location: complement(31853..32113)
location: region:31853-32113:-1
so has part: feature:31853-32113:-1:exon

XP_018733399.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31853-32113:-1:exon

AWJ20_3717
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: POP2
locus tag: AWJ20_3717
so part of: sequence
location: complement(<40106..>41998)
location: region:40106-41998:-1
so has part: feature:40106-41998:-1:exon
subclass of: SO_0000010

30035769
type: Gene
SIO_000068: ncbigene

position:40106:-1
position: 40106
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:41998:-1
position: 41998
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40106-41998:-1:exon

AWJ20_3717
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: POP2
locus tag: AWJ20_3717
product: CCR4-NOT core DEDD family RNase subunit POP2
transcript id: XM_018880740.1
SIO_010081: AWJ20_3717
subclass of: SO_0000673
so part of: AWJ20_3717
location: complement(<40106..>41998)
location: region:40106-41998:-1
so has part: feature:40106-41998:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:40106-41998:-1:exon

AWJ20_3717
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: POP2
locus tag: AWJ20_3717
inference: similar to AA sequence:KEGG_Orthology:K12581
codon start: 1
product: CCR4-NOT core DEDD family RNase subunit POP2
translation: MMRASGNYNNRSNGPNAGLMSLQMLQGQGGQIQGQPQNQLQQQQQHQQQGVMPLQQQQYINAGAGYKQMLPDQRDDHGDDQQQMLQAQAQAQAQAQAQAQAQAHAHAQQAHVHQAQAHAHAHAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQGQPNLMFQRMQARNQNINQMAAASLQAFGGVPNVGAGADIGVGAGGLGNGLMSSSTGGGPLSNYNNTTDINAFNGSLPNLGLAGGMMNIANTGGAGGALGGPTGNLAAAGGLSAAAAGGSMKSSTIVNVWKWNLEDQMAAIRDLVERYKYISVDCKFPGIVARPIGTFKSTSEYHYQTLRSNVDILQVIQIGLTFADEYGNHPVGVASTFQFNFKFNVNEDMCSADGVELLRQSGIDFAKHETDGIDPFAFGELILTSGLTLDDTVSWITFHSGYDLGYILSIMLNNEVPVEERGFLSTLRTYFPNVWDVKCITKTFKLSNKSQLSEVADDFQVRRLPMPQSSVNGGLSSLGGLSQAGNDAFVTSGCFFEIKRLIGDANINKVRNYLFGLGDGFEDDPSQQSNNGTNNAAAAASAAILNAISGGATASASASHGVTNAANIFQFGKMGGGAL
SIO_010081: AWJ20_3717
subclass of: SO_0000673
so part of: AWJ20_3717
location: complement(40106..41998)
location: region:40106-41998:-1
so has part: feature:40106-41998:-1:exon

XP_018733400.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:40106-41998:-1:exon

AWJ20_3718
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SSK2
locus tag: AWJ20_3718
so part of: sequence
location: <46241..>49117
location: region:46241-49117:1
so has part: feature:46241-49117:1:exon
subclass of: SO_0000010

30035770
type: Gene
SIO_000068: ncbigene

position:46241:1
position: 46241
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:49117:1
position: 49117
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46241-49117:1:exon

AWJ20_3718
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SSK2
locus tag: AWJ20_3718
product: mitogen-activated protein kinase kinase kinase SSK2
transcript id: XM_018880741.1
SIO_010081: AWJ20_3718
subclass of: SO_0000673
so part of: AWJ20_3718
location: <46241..>49117
location: region:46241-49117:1
so has part: feature:46241-49117:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:46241-49117:1:exon

AWJ20_3718
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SSK2
locus tag: AWJ20_3718
inference: similar to AA sequence:KEGG_Orthology:K11230
codon start: 1
product: mitogen-activated protein kinase kinase kinase SSK2
translation: MSKEKKFATPPLKIDLSSARAAVPINQGFRSTTPTIHSPFLLSPGSQSLPSSTSSSSTSLHALAGGSFLGTSHGANHGYNNNVNGTSTGNNTGSNTGNGNGTGNGNSSIASIGHSNGISGPSSPGGVSHGSVGPGNSNGSTGLSRHRSIGSIPTTHRSRRDSGKSLGASGSMHTGLTAPARVSPRQSPRSSPRSSPRPRDGTGKEEDGGSYFTLSRPGTASSPVNIPGTSSSSNSKMSLSSQTSYSGSSFDFDGQVQRVNSSLRKYDAATAGSPTGTQPINASSPSMQSNNNALLSPTVSPRPHSPIRALSNSYAPARGPSHQNVSSVKTKGKAPQSPIQDDSLTSNKSNNSPKQQQQQQQQQSNSFHHRSTAHASGATTAAAAVTAAANSDESPIFAKRKDAHLSYLAQEPVYIHKMTNAAGDDYVKGLIGDNTNYEYLSDDDDTDSITEVQPEVIGFGGVGTSFDDEYTELGSSYPFLETTYNSNGPSTSSATNNEPAGSNSHKDRDKATASIESDGSTPERWRERLEWQAMLASVLTGEVFRAEKRRIKQPKKSGNGIDEEEMWLALRAKVSGRTMNEQKRVLEYSRSTVTDALERVQNFKIENPANITAEDALKQLNPVLQLLYRCESLYRTLAVLKGENAIYGNADFQTKVDCLLSWKSITEAINQELELLRKWTGNYDIDPSRVPEKSSPSEEGSRLSMIQEEKQTLVESILKQDNLSNIFDRRISNRLGPLIEKAREATIKYSDMFLELGLPLFNNSLLHVMVFPITLIREIIQMRLTYARRLVNPTLMIVDQMILDFQSIISHALVVMDRNLQYTSPILDKGWIFPTQIDESFNSTLLDSVNFYLDLLNKKFLDGGRSSKSLFRAYKETEQLEQHYTFLLGVGRLVEGGDLAVAELITSLESKILTRLLTYWEHQMKGPQSWAPTEIERWFTTTMEIIRSFQRKLLRFHK
SIO_010081: AWJ20_3718
subclass of: SO_0000673
so part of: AWJ20_3718
location: 46241..49117
location: region:46241-49117:1
so has part: feature:46241-49117:1:exon

XP_018733401.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:46241-49117:1:exon

AWJ20_3719
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SSK2
locus tag: AWJ20_3719
so part of: sequence
location: <49255..>51228
location: region:49255-51228:1
so has part: feature:49255-51228:1:exon
subclass of: SO_0000010

30035771
type: Gene
SIO_000068: ncbigene

position:49255:1
position: 49255
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:51228:1
position: 51228
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49255-51228:1:exon

AWJ20_3719
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SSK2
locus tag: AWJ20_3719
product: mitogen-activated protein kinase kinase kinase SSK2
transcript id: XM_018880742.1
SIO_010081: AWJ20_3719
subclass of: SO_0000673
so part of: AWJ20_3719
location: <49255..>51228
location: region:49255-51228:1
so has part: feature:49255-51228:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:49255-51228:1:exon

AWJ20_3719
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SSK2
locus tag: AWJ20_3719
inference: similar to AA sequence:KEGG_Orthology:K11230
codon start: 1
product: mitogen-activated protein kinase kinase kinase SSK2
translation: MSLLRLSGHFLVYTGTFEKYGIYAIADPYLKDRPETVRAILSGYSRIPKKDVEHVSYVMIFCIEEPLVWEGEIVNLDMPYFDIDMKPGRMRLITEGGSQELKRTRKEVSALTGGGDVFDIAVDTKSHITRVDHEMARVRKLFFKLSTSVITSCILFRRRCKPYGCQETVHNMFVFAREFGQRGISVMDANRRGTVAIKLINLCIEWVTFICDDCVPTENKTFRWTVVALEFAMVMTRGVNIVAISGDQFAKLRVKVADCMTLLISHFDITGAKSRAAQQGNSDVLRRGKALNISVDDDDELVAMLREDMVKKLELLEQQRQDTHSVGKVLDDSSGDTEFLTYLASAFSNLQIRWQQGRYIGGGTFGSVYAAVNLDTGGVMAVKEIRLQDTQSIRHILKSIKDEMTVLEILSHPNVVQYYGVEVHRDRVFIFMEYCQGGSLAGLLEYGRIEDEQVIQVYTLQMLEGLAYLHQSGIVHRDIKPENILLDHNGVIKFVDFGAAKVIAKTGKTRQASATNKSNATTGGNKTKLNSMTGTPMYMSPEVITGADSGRHGSIDIWSLGCCVLEMATGRRPWANLDNEWAIMYHIAAGHLPQLPSADQLSIEGQQFLMKTLERDPKKRPSAVDLLSDPWMVSIRNVVLGYSAGSDDSAVSSPSEG
SIO_010081: AWJ20_3719
subclass of: SO_0000673
so part of: AWJ20_3719
location: 49255..51228
location: region:49255-51228:1
so has part: feature:49255-51228:1:exon

XP_018733402.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:49255-51228:1:exon

AWJ20_3720
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: GEF1
locus tag: AWJ20_3720
so part of: sequence
location: <53001..>55439
location: region:53001-55439:1
so has part: feature:53001-55439:1:exon
subclass of: SO_0000010

30035773
type: Gene
SIO_000068: ncbigene

position:53001:1
position: 53001
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:55439:1
position: 55439
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:53001-55439:1:exon

AWJ20_3720
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: GEF1
locus tag: AWJ20_3720
product: Gef1p
transcript id: XM_018880744.1
SIO_010081: AWJ20_3720
subclass of: SO_0000673
so part of: AWJ20_3720
location: <53001..>55439
location: region:53001-55439:1
so has part: feature:53001-55439:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:53001-55439:1:exon

AWJ20_3720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: GEF1
locus tag: AWJ20_3720
inference: similar to AA sequence:KEGG_Orthology:K05012
note: Voltage-gated chloride channel; localized to the golgi, the endosomal system, and plasma membrane; involved in cation homeostasis; highly homologous to vertebrate voltage-gated chloride channels; modulates TBSV model (+) RNA virus replication by regulating copper metabolism; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 15710404]; GO_component: GO:0005797 - Golgi medial cisterna [Evidence IDA] [PMID 9614122]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0034707 - chloride channel complex [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 17662057]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 15710404]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 17662057]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17662057]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO_function: GO:0005254 - chloride channel activity [Evidence IEA]; GO_function: GO:0005216 - ion channel activity [Evidence IEA]; GO_function: GO:0005247 - voltage-gated chloride channel activity [Evidence IEA]; GO_function: GO:0005247 - voltage-gated chloride channel activity [Evidence IDA] [PMID 12074596]; GO_process: GO:0006878 - cellular copper ion homeostasi…
codon start: 1
product: Gef1p
translation: MSSDSRVHLESLPSGTSVANDSIPDSLVTEIRRYEDFSTIDWVEAASRENTLRIRTYKNAYGKSINSRRPSGPIDPVSENAEDSNAFGFDVLKGTGARYGLLVRQMYSAAQSWLVLALVGACIGLIAGFLSIVTELLSDFKTGYCTAGLYLNENFCCSGYDESDICPEWHRWSSFSGINYVIYIVFSTFFAFLAAFFVYSFAPYAAGSGISEIKCIIAGFIMNGFLDAKTLFIKSVTLPLTIASGLSVGKEGPSVHYAVCVGNTVAGLFPKYRVYKTKMREVLSSCAAAGVAVAFGSPMGGVLFSLEEMTSSFQLKSMWRSYFCALVATATLASVNPFRTGQLVLFSVKYDHDWHFFEIIFFILIGLFGGFGGLFIIKWNLRVQAFRKKYLGNYAIQEATLLAFITAVICYFNEFLRIDMTESMQILFHECDHGFEDNVTCQPSHRMYLATTLIFGMVIRTILTIISYGSKVPAGIFVPSLAIGALFGRFVGTVVWWLHDTFPDATFFSSCPPDAPCITPGTYALLGSAALLSGVMNITVTVVVIIFEVTGALRYILPTMIVVGVTKAVGDYFGPGGGGIADRTIVANGYPFLEDDGDDEHNHYANDPIELAMTKDPIQIPSKKFTISHIQSLLDGSSHQSYPVVDIDDEDASITSSIPTKSSTTATTINQTTNYTNNYLIGYIWRSELEYIVAHNRDTPDRYVSFDSLESSEDSLNFSRLVNFSPVVVQNNTPLSKVIALFSKVGPRIVYVERNKSGTLCGLLTRKDILKYQHKSDYAMAPPDRSAAEEMDRKIWELLSQAISKVQELVRR
SIO_010081: AWJ20_3720
subclass of: SO_0000673
so part of: AWJ20_3720
location: 53001..55439
location: region:53001-55439:1
so has part: feature:53001-55439:1:exon

XP_018733403.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:53001-55439:1:exon

AWJ20_3721
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3721
so part of: sequence
location: complement(<56054..>57070)
location: region:56054-57070:-1
so has part: feature:56054-57070:-1:exon
subclass of: SO_0000010

30035774
type: Gene
SIO_000068: ncbigene

position:56054:-1
position: 56054
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:57070:-1
position: 57070
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:56054-57070:-1:exon

AWJ20_3721
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3721
product: hypothetical protein
transcript id: XM_018880745.1
SIO_010081: AWJ20_3721
subclass of: SO_0000673
so part of: AWJ20_3721
location: complement(<56054..>57070)
location: region:56054-57070:-1
so has part: feature:56054-57070:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:56054-57070:-1:exon

AWJ20_3721
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3721
codon start: 1
product: hypothetical protein
translation: MADTEEYSSRRSASPDRYDRQRSLSPRRDSAQDGSNEAGLPDDRERNGDSGAANDSSNGNDAATSGSASGPVDDDEAAKNEGTNLFVSGLARQVTEAKLEELFSKYGTVVKCQIMVDPHTRDSRGFGFVDMADVEGADAAIAGINGQDLLDRVVSVEKAKRKRPRTPTPGKYFGPPKTRGAGSFRRGGYGGPSRYGGGDYRGGYRPRYDDRDRYGGPPPPGGYDRYDRYDRYDRYDRYDRYDDRFRGPPPPRGPPGPSRYDDRDGYRDREYSSRYDEGPRDRYAPPHRRGDNYRDRERRGPPPSGGPGGDSRDYDRPSYRDEPRGAGYSPEREDYRRD
SIO_010081: AWJ20_3721
subclass of: SO_0000673
so part of: AWJ20_3721
location: complement(56054..57070)
location: region:56054-57070:-1
so has part: feature:56054-57070:-1:exon

XP_018733404.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:56054-57070:-1:exon

AWJ20_3722
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: WHI2
locus tag: AWJ20_3722
so part of: sequence
location: <58198..>59196
location: region:58198-59196:1
so has part: feature:58198-59196:1:exon
subclass of: SO_0000010

30035775
type: Gene
SIO_000068: ncbigene

position:58198:1
position: 58198
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:59196:1
position: 59196
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:58198-59196:1:exon

AWJ20_3722
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: WHI2
locus tag: AWJ20_3722
product: Whi2p
transcript id: XM_018880746.1
SIO_010081: AWJ20_3722
subclass of: SO_0000673
so part of: AWJ20_3722
location: <58198..>59196
location: region:58198-59196:1
so has part: feature:58198-59196:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:58198-59196:1:exon

AWJ20_3722
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: WHI2
locus tag: AWJ20_3722
note: Protein required for full activation of the general stress response; required with binding partner Psr1p, possibly through Msn2p dephosphorylation; regulates growth during the diauxic shift; negative regulator of G1 cyclin expression; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0019211 - phosphatase activator activity [Evidence IMP] [PMID 12090248]; GO_process: GO:0007015 - actin filament organization [Evidence IMP] [PMID 15020461]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 15020461]; GO_process: GO:0000422 - mitochondrion degradation [Evidence IMP] [PMID 21429936]; GO_process: GO:0040008 - regulation of growth [Evidence IMP] [PMID 2204680]; GO_process: GO:0009408 - response to heat [Evidence IMP] [PMID 12090248]; GO_process: GO:0009651 - response to salt stress [Evidence IMP] [PMID 12090248]
codon start: 1
product: Whi2p
translation: MSIQPSSVITQVSATVPSAALHPFVSYDEQEKSENIQLNLRGVIFNISREELLRLPESILIGITNGALYDQNTIGGASLADANAATANTLSPECFKYTLDVFRSAAKGLPRTLLSIEGSEEQGFDDAILGVDEDTEGKSANSGVAMDADGNPKTETVSDISEILRRRPAIIVLREDLDYYCLPNGPNVDAEGMRQIKHSCGEAILNQRRIFGGLRKGESENSPEHHLIAMLCSSGFQIDDDWGFRAREPHKTVVSSLALIRLKMVDEQHHEQSPETQQELSTPQKLLLFWRKPARKCWWDSIELNDVPGVDGPVRVHIRRVWTLELSVIGVR
SIO_010081: AWJ20_3722
subclass of: SO_0000673
so part of: AWJ20_3722
location: 58198..59196
location: region:58198-59196:1
so has part: feature:58198-59196:1:exon

XP_018733405.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:58198-59196:1:exon

AWJ20_3723
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: COQ3
locus tag: AWJ20_3723
so part of: sequence
location: complement(<59408..>60247)
location: region:59408-60247:-1
so has part: feature:59408-60247:-1:exon
subclass of: SO_0000010

30035776
type: Gene
SIO_000068: ncbigene

position:59408:-1
position: 59408
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:60247:-1
position: 60247
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59408-60247:-1:exon

AWJ20_3723
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: COQ3
locus tag: AWJ20_3723
product: hexaprenyldihydroxybenzoate methyltransferase
transcript id: XM_018880747.1
SIO_010081: AWJ20_3723
subclass of: SO_0000673
so part of: AWJ20_3723
location: complement(<59408..>60247)
location: region:59408-60247:-1
so has part: feature:59408-60247:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:59408-60247:-1:exon

AWJ20_3723
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: COQ3
locus tag: AWJ20_3723
note: O-methyltransferase; catalyzes two different O-methylation steps in ubiquinone (Coenzyme Q) biosynthesis; component of a mitochondrial ubiquinone-synthesizing complex; phosphoprotein; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 10419476]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 10419476]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 10760477]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0008425 - 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity [Evidence IEA]; GO_function: GO:0061543 - 3-demethylubiquinone-6 3-O-methyltransferase activity [Evidence IMP] [PMID 10419476]; GO_function: GO:0008689 - 3-demethylubiquinone-9 3-O-methyltransferase activity [Evidence IEA]; GO_function: GO:0004395 - hexaprenyldihydroxybenzoate methyltransferase activity [Evidence IEA]; GO_function: GO:0004395 - hexaprenyldihydroxybenzoate methyltransferase activity [Evidence IMP] [PMID 1885593]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IDA] [PMID 10419476]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IMP] [PMID 1885593]
codon start: 1
product: hexaprenyldihydroxybenzoate methyltransferase
translation: MSHHEKVIAANLSSFKDKAAEYDNENTQLISRVVATKVLQFRFDNAPDTEETEFASNDFDFNDLDIPNVADELWDPESTRVLDFACGTGLVSQSLAPYCKEIVGVDISPDMVGIFNQKIENQGIPESEMRALVLDLLATDDDSLGQFDAVVTSLSYHHIHDTDKCTKRLAGKLAPNGRLYVIDIEKGSGGSVHGRMTDEEALKEGVAHRGGLEADELVQTFKNAGLDQVKVTRAFRVKLWVPEDKVKSFSGITGETKVVNGKTLHCSKVNLMLVTGRRK
SIO_010081: AWJ20_3723
subclass of: SO_0000673
so part of: AWJ20_3723
location: complement(59408..60247)
location: region:59408-60247:-1
so has part: feature:59408-60247:-1:exon

XP_018733406.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:59408-60247:-1:exon

AWJ20_3724
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3724
so part of: sequence
location: complement(<61623..>61943)
location: region:61623-61943:-1
so has part: feature:61623-61943:-1:exon
subclass of: SO_0000010

30035777
type: Gene
SIO_000068: ncbigene

position:61623:-1
position: 61623
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:61943:-1
position: 61943
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:61623-61943:-1:exon

AWJ20_3724
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3724
product: hypothetical protein
transcript id: XM_018880748.1
SIO_010081: AWJ20_3724
subclass of: SO_0000673
so part of: AWJ20_3724
location: complement(<61623..>61943)
location: region:61623-61943:-1
so has part: feature:61623-61943:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:61623-61943:-1:exon

AWJ20_3724
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3724
codon start: 1
product: hypothetical protein
translation: MSGSRGEANFVFRCKMCKRESSATIKLTGKTYGPDNSGKPVKVAEVDNRGLEFVEFIADGVFKCQGEESGYKFPEVNLDDGEWFDYDEKAGEEVSITEVKWEFVKA
SIO_010081: AWJ20_3724
subclass of: SO_0000673
so part of: AWJ20_3724
location: complement(61623..61943)
location: region:61623-61943:-1
so has part: feature:61623-61943:-1:exon

XP_018733407.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:61623-61943:-1:exon

AWJ20_3725
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PMT1
locus tag: AWJ20_3725
so part of: sequence
location: complement(<62521..>65175)
location: region:62521-65175:-1
so has part: feature:62521-65175:-1:exon
subclass of: SO_0000010

30035778
type: Gene
SIO_000068: ncbigene

position:62521:-1
position: 62521
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:65175:-1
position: 65175
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:62521-65175:-1:exon

AWJ20_3725
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PMT1
locus tag: AWJ20_3725
product: dolichyl-phosphate-mannose-protein mannosyltransferase PMT1
transcript id: XM_018880749.1
SIO_010081: AWJ20_3725
subclass of: SO_0000673
so part of: AWJ20_3725
location: complement(<62521..>65175)
location: region:62521-65175:-1
so has part: feature:62521-65175:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:62521-65175:-1:exon

AWJ20_3725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PMT1
locus tag: AWJ20_3725
inference: similar to AA sequence:KEGG_Orthology:K00728
codon start: 1
product: dolichyl-phosphate-mannose-protein mannosyltransferase PMT1
translation: MDVHPPLAKMLYAVVGWFAGYDGEFEFSDIGVEYTTSENYVPYIAMRTFPAVLGVLTIMLSYSTLRASGVKPLIALFGSALMTFDNALATQSRYILLDSPLVFFIAITAYGFKKFENEVPFTKDWYRYLFLTGLGLGATVSSKWVGLFTIGWVGALTLYQLWWLLGDLNVSYKKFLAHFGARVVFLIIVPIVFYVGMFALHFICLSNTGDGASFMSPEFQSTLQHTNLAHDIPADVAFGSEIALRHWNTQGGYLHSHDHMYATGSKQQQVTLYPHKDHNNAWVLENATALEEYETDAHGNITATNYLKPPVFIKDGAIVKLRHKSTFRRLHSHDVRPPVSEQEHHNEVSAYGYEGFDGDANDNFRVEILEKYSEPGVARERVRTLQTKFRLVHTMTGCHLFSHAVKLPKWAFEQQEVTCIKGGTLPNTIWYVEDNVNAELGPDAELVSYRKPSFFEKFIELNKVMWKVNAGLTDTHAWQSRPESWPLMQRGINFWVKDYRQVYLIGNGVTWWTLSLLVVLYVSYKAFWVLSWQRNVIQFYNDPDYALYDSNVGSYLLGWAFHYFPSFLMDRQLFLHHYLGSVFFGILALAQAWQFLTTRLIRNKLVGHALTVIFFSGALAWYIWYSPLIYGLPWTKDLCNQSKFFDMDFSCDSFHGTYAEYDIITRKRSVHYNEKSSSSSPEVAESVAAPEEAAAQNVEPVAQPNESSGIIEQPEYKEYDYDVENPSPVENPIPSETAEDEDNLRESSNDGEGVSEFEAAKSEAPSEFETTPAPVIKESPVSFTRTLKKITYRDEDGNPIDRAAAEKLIEKYKKGAVSPAPAAPAAGSPAPEPESSEPAAEPAAEPVPEPVPEPEPVEPAVEEAVVPEDVPDNVPEEETGAAEV
SIO_010081: AWJ20_3725
subclass of: SO_0000673
so part of: AWJ20_3725
location: complement(62521..65175)
location: region:62521-65175:-1
so has part: feature:62521-65175:-1:exon

XP_018733408.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:62521-65175:-1:exon

AWJ20_3726
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: HOL1
locus tag: AWJ20_3726
so part of: sequence
location: <70237..>71922
location: region:70237-71922:1
so has part: feature:70237-71922:1:exon
subclass of: SO_0000010

30035779
type: Gene
SIO_000068: ncbigene

position:70237:1
position: 70237
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:71922:1
position: 71922
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:70237-71922:1:exon

AWJ20_3726
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: HOL1
locus tag: AWJ20_3726
product: Hol1p
transcript id: XM_018880750.1
SIO_010081: AWJ20_3726
subclass of: SO_0000673
so part of: AWJ20_3726
location: <70237..>71922
location: region:70237-71922:1
so has part: feature:70237-71922:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:70237-71922:1:exon

AWJ20_3726
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: HOL1
locus tag: AWJ20_3726
note: Putative transporter in the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; mutations in membrane-spanning domains permit cation and histidinol uptake; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 8955402]; GO_function: GO:0015665 - alcohol transmembrane transporter activity [Evidence IMP] [PMID 2405251]; GO_function: GO:0022890 - inorganic cation transmembrane transporter activity [Evidence IMP] [PMID 8955402]; GO_process: GO:0006812 - cation transport [Evidence IMP] [PMID 8955402]; GO_process: GO:0015850 - organic hydroxy compound transport [Evidence IMP] [PMID 2405251]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Hol1p
translation: MGLLYFPRNDTHLDDGTEIPGTVKLVDVDHNLDVQHQGEKDVILVPQPTNSPDDPLNWTPFRKIITLIWPCYYTFMVAVLAAVPAISYPEMVTDLGIPLGNLVSGTGYLFLFFGLGCLFWQPIALNFGRRPVYIYTLLIGGIACPLWLNHVSSSGEYYANRIICGFFLSSVESLGEVVVGDLYFTHQRGMGINIYMMSLLSGTFLGPLAGSFITGSMTWKWLNNFLAIFCGMGVILSYIFMEETMFFRPAAAEDILSRAGVVHHAEEQEADMSTTSSSNGNEKNVASTVQLNSGAGSIEELAPPARKTYFQRYPILFYRSPGQPNLFFQSVIRPLQIFVYFLPVAWSGLVVSLALAWWSVAGGTIAAILAEPPYNFGSSALGLVYISPLVSSIICGYIGGPLSDRFCLWMARHNNGVREPEFRFYIGILALILTPAGLWMYGIGAAHQAPWPVIVIGYGFSTVGSTLGQSLPYTYIMDCYPRIGGDSMVTVILVRNIIGGFAFAYAITPWIATDGYQTTFIILGLLSIFFWLTCIPIIIFGKSLRRKTAQRYHQYAQTSSH
SIO_010081: AWJ20_3726
subclass of: SO_0000673
so part of: AWJ20_3726
location: 70237..71922
location: region:70237-71922:1
so has part: feature:70237-71922:1:exon

XP_018733409.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:70237-71922:1:exon

AWJ20_3727
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MNN10
locus tag: AWJ20_3727
so part of: sequence
location: <75187..>76836
location: region:75187-76836:1
so has part: feature:75187-76836:1:exon
subclass of: SO_0000010

30035780
type: Gene
SIO_000068: ncbigene

position:75187:1
position: 75187
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:76836:1
position: 76836
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:75187-76836:1:exon

AWJ20_3727
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MNN10
locus tag: AWJ20_3727
product: Mnn10p
transcript id: XM_018880751.1
SIO_010081: AWJ20_3727
subclass of: SO_0000673
so part of: AWJ20_3727
location: <75187..>76836
location: region:75187-76836:1
so has part: feature:75187-76836:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:75187-76836:1:exon

AWJ20_3727
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MNN10
locus tag: AWJ20_3727
inference: similar to AA sequence:KEGG_Orthology:K05531
note: Subunit of a Golgi mannosyltransferase complex; complex mediates elongation of the polysaccharide mannan backbone; membrane protein of the mannosyltransferase family; other members of the complex are Anp1p, Mnn9p, Mnn11p, and Hoc1p; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0000136 - alpha-1,6-mannosyltransferase complex [Evidence IDA] [PMID 10037752]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000009 - alpha-1,6-mannosyltransferase activity [Evidence IDA] [PMID 10037752]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0000917 - barrier septum assembly [Evidence IMP] [PMID 16034811]; GO_process: GO:0000032 - cell wall mannoprotein biosynthetic process [Evidence IMP] [PMID 10037752]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 23210626]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 8991513]
codon start: 1
product: Mnn10p
translation: MRLPQAAFLACASFAILATIWYMATFSTVDATKWKLPSSVGNSKPNKVKIQKTATAPVDPILLPPKTKTLAKVPIPTTTTEVLTDTEMQIERLQEALRSKDKKIADSVQQLKDKDRLYNEEQEKKDKEVAAKLDALKKAQASLNDQKEKVQKEKEEERKKKEEEERKKKELEEEKKKKEEEEKKKEEEDRKSLTDAYYIIRDRMLLEEHKLLEPIEIPDEERHNHYDKDNKLMPNGKKILLLSAFDGAGSTDNDLTDLFMSNREEYANYHGYTHLFVNTTKYKKNDKLKRPAVWFKLPAIKEAFEKFPEVEWIWWVDTDIIIMNEEIDLAAHVLNPYVLSNRLTYERPVNDLGDHFSGSLYPARDHVDVDNIDIIFTQDHLGINAGSFFIKRSWFAEFVLDMWGDKFLIESKFPREEQDAFIYLFTNHKTVFHHTGLVPQRMMNAYHGYYLHTANWQEGDLCIHFAGHNKGLGFEKNFAHYWGLRKRVPKEFQINVPEEEAKLKVIADKAQKEKEEQERQKKEKEEQEKKEKEEKEKQEKEEKEKNGKQ
SIO_010081: AWJ20_3727
subclass of: SO_0000673
so part of: AWJ20_3727
location: 75187..76836
location: region:75187-76836:1
so has part: feature:75187-76836:1:exon

XP_018733410.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:75187-76836:1:exon

AWJ20_3728
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: FPK1
locus tag: AWJ20_3728
so part of: sequence
location: <78829..>81855
location: region:78829-81855:1
so has part: feature:78829-81855:1:exon
subclass of: SO_0000010

30035781
type: Gene
SIO_000068: ncbigene

position:78829:1
position: 78829
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:81855:1
position: 81855
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:78829-81855:1:exon

AWJ20_3728
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: FPK1
locus tag: AWJ20_3728
product: serine/threonine protein kinase FPK1
transcript id: XM_018880752.1
SIO_010081: AWJ20_3728
subclass of: SO_0000673
so part of: AWJ20_3728
location: <78829..>81855
location: region:78829-81855:1
so has part: feature:78829-81855:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:78829-81855:1:exon

AWJ20_3728
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: FPK1
locus tag: AWJ20_3728
inference: similar to AA sequence:KEGG_Orthology:K08286
codon start: 1
product: serine/threonine protein kinase FPK1
translation: MHRNRSRAMTVPSRPMNGSSPSIVGSINPGGDFESGLNGNGNSNGFRVVSAGSSSSSSNLPQKLKNLFRLSSFSNSNSVGGESSGSGAGHLTTGTHHTGSGTELSSGNPNTTDSSPAIGSENTPELSLAHTGDDADASDSPDTPNPVANDSTNWGFKSSPGPSDILAKPPKRSFLGRLRSPSSPSPMLLTPDPEEGQESSPPPLPKGLSVSAQASPSLRPVNAPSDTVASANPYFSYQGQPAHAQQREEQQQHLHQGHGQAQKAQLQHSQQHYSSNQHQNDHQHPNQNLHQQHQQQSQPTQNTSRPQNRRNNSHSLFSFSSFLGDHSNSNHNHGRNTNTNKELASSTNDENNGASDLKSDSTVSAGSDGGYIVNGANHSTTNASTPLAENDITIVALPAEDHEEPLAPPSKGIFSRNLRRVASAPNEIKNMLLNSPQVRPADGPSGTIPSGGINGTGNQASSNTNTSDNATAIGADNSRPDQGTGISSHSISTSNNGLKANKSSSTGLTTTTFSKARSPSTPKVYNRSYSRSSIKICDVEVTPSSFDKIKLLGKGDVGKVYLVREKKTNHLYAMKVLSKREMIKRNKIKRALAEQEILATSNHPFIVTLYHSFQSDEHLYLCMEYCMGGEFFRALQTREGKSLKEDDARFYAAEVTAALEYLHLMGYIYRDLKPENILLHQSGHIMLSDFDLSKQSGSEAAPTIVNGSGRSGGGSSSNLPAIDTKACIADFRTNSFVGTEEYIAPEVIRGNGHTSAVDWWTLGILLFEMLFGTTPFKGKNRNATFANILKSDVNFYDVQPVSSNCKSIIRKLLIKDENKRLGSRAGASDIKGHPFFKTTQWALLRNRVPPIIPVQGKGRDAVNFRKMKESGSVDFDEETPYDANANSTHSSAGDPSEPSNFAPDPFSNFNSITLHHDGGDADGNAYYDDSDAEEEETTTAAPSGRQSPLANPSSTHTSVPGSPKVYNGFGSDMETDISTHHSVFSGAGSSSPSLFKPYFKGFTTSLKN
SIO_010081: AWJ20_3728
subclass of: SO_0000673
so part of: AWJ20_3728
location: 78829..81855
location: region:78829-81855:1
so has part: feature:78829-81855:1:exon

XP_018733411.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:78829-81855:1:exon

AWJ20_3729
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: FEX2
locus tag: AWJ20_3729
so part of: sequence
location: complement(<81989..>83152)
location: region:81989-83152:-1
so has part: feature:81989-83152:-1:exon
subclass of: SO_0000010

30035782
type: Gene
SIO_000068: ncbigene

position:81989:-1
position: 81989
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:83152:-1
position: 83152
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:81989-83152:-1:exon

AWJ20_3729
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: FEX2
locus tag: AWJ20_3729
product: Fex2p
transcript id: XM_018880753.1
SIO_010081: AWJ20_3729
subclass of: SO_0000673
so part of: AWJ20_3729
location: complement(<81989..>83152)
location: region:81989-83152:-1
so has part: feature:81989-83152:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:81989-83152:-1:exon

AWJ20_3729
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: FEX2
locus tag: AWJ20_3729
note: Protein involved in fluoride export; nearly identical to FEX1, and deletion of both proteins results in a large increase in fluoride sensitivity compared with the single mutant; contains two FEX domains connected by a linker; part of a widespread family of conserved fluoride export proteins; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]
codon start: 1
product: Fex2p
translation: MDEVAESSDPSTGSSVRGHVEPKGEEQYRRFRRHVFVTVISNKYIDVVVLHLLLAFFGITGVLARVGLTRLTSFPGSQNGGVLWSNFGGCLLMGILVRSEALFGDLIVIEQMAPLDVVEHGASGNVLRRTYTRKEKIPLYIGLATGVCGSITSFSTFMIELFQLSALQPPTGVSYPNPGYGVMAFLSYLIITLTVSFGGYFCGFHVADGIEKFFPISLATYTLIIEVLGAMLGLTAWVAVIVLAILIPQWRYWTFACIFGPFGVYARFWSARLFNKITHKFLVGTFIANMIATAILCALIILQRGQTPSHGLIIKSKLQCQAISALQDGFCGNFSTISSFIAELVAFRSKRNAYIYGGISIGGGFSIVVVILGSYAWTRGISAVAAC
SIO_010081: AWJ20_3729
subclass of: SO_0000673
so part of: AWJ20_3729
location: complement(81989..83152)
location: region:81989-83152:-1
so has part: feature:81989-83152:-1:exon

XP_018733412.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:81989-83152:-1:exon

AWJ20_3730
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: GCN3
locus tag: AWJ20_3730
so part of: sequence
location: <84401..>84823
location: region:84401-84823:1
so has part: feature:84401-84823:1:exon
subclass of: SO_0000010

30035784
type: Gene
SIO_000068: ncbigene

position:84401:1
position: 84401
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:84823:1
position: 84823
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:84401-84823:1:exon

AWJ20_3730
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: GCN3
locus tag: AWJ20_3730
product: translation initiation factor eIF2B subunit alpha
transcript id: XM_018880755.1
SIO_010081: AWJ20_3730
subclass of: SO_0000673
so part of: AWJ20_3730
location: <84401..>84823
location: region:84401-84823:1
so has part: feature:84401-84823:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:84401-84823:1:exon

AWJ20_3730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: GCN3
locus tag: AWJ20_3730
inference: similar to AA sequence:KEGG_Orthology:K03239
note: Alpha subunit of translation initiation factor eIF2B; guanine-nucleotide exchange factor for eIF2; activity subsequently regulated by phosphorylated eIF2; positive regulator of GCN4 expression; assembles into filaments with Gcd2p, Gcd6p, Gcd7p, and Sui2p as cells approach stationary phase and under cytosolic acidification and starvation conditions; GO_component: GO:0005851 - eukaryotic translation initiation factor 2B complex [Evidence IMP] [PMID 8099443]; GO_component: GO:0005851 - eukaryotic translation initiation factor 2B complex [Evidence IDA] [PMID 8336705]; GO_component: GO:0005851 - eukaryotic translation initiation factor 2B complex [Evidence IDA,IPI] [PMID 8506384]; GO_component: GO:0032045 - guanyl-nucleotide exchange factor complex [Evidence IDA] [PMID 8506384]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IMP] [PMID 8099443]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IGI,IMP,IPI] [PMID 8887689]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IMP] [PMID 9032257]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IDA] [PMID 8506384]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IMP] [PMID 8099443]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IDA] [PMID 8336705]; GO_process: GO:0044237 - cellular metabolic process [Evidence IEA]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IMP] [PMID 8099443]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IDA] [PMID 8506384]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IGI,IPI] [PMID 8887689]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IMP] [PMID 9032257]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: G…
codon start: 1
product: translation initiation factor eIF2B subunit alpha
translation: MARILRENGIPVCQIPDSAVGYVIDKVDKIFFGAEGVAESGGVINQMGSYQIAVLAKTTNTPVYVLAESHKFVRLYPLSPDDLPTEYPLEFTTKVDGERDISESPQVDFTPHQYVTALITDLGTLTPSGVSEELIKIWFD
SIO_010081: AWJ20_3730
subclass of: SO_0000673
so part of: AWJ20_3730
location: 84401..84823
location: region:84401-84823:1
so has part: feature:84401-84823:1:exon

XP_018733413.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:84401-84823:1:exon

AWJ20_3731
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RPC37
locus tag: AWJ20_3731
so part of: sequence
location: complement(<85030..>85836)
location: region:85030-85836:-1
so has part: feature:85030-85836:-1:exon
subclass of: SO_0000010

30035785
type: Gene
SIO_000068: ncbigene

position:85030:-1
position: 85030
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:85836:-1
position: 85836
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:85030-85836:-1:exon

AWJ20_3731
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RPC37
locus tag: AWJ20_3731
product: Rpc37p
transcript id: XM_018880756.1
SIO_010081: AWJ20_3731
subclass of: SO_0000673
so part of: AWJ20_3731
location: complement(<85030..>85836)
location: region:85030-85836:-1
so has part: feature:85030-85836:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:85030-85836:-1:exon

AWJ20_3731
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RPC37
locus tag: AWJ20_3731
inference: similar to AA sequence:KEGG_Orthology:K14721
note: RNA polymerase III subunit C37; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 10611227]; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 3905793]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0001056 - RNA polymerase III activity [Evidence IDA] [PMID 3905793]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IDA] [PMID 3905793]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]
codon start: 1
product: Rpc37p
translation: MAAEDEETGLFMDDNESDDMAAVAESDVDMKDEEDPVSEAKQDAGLDDEDDPVVREFPVYSSQVLGKKLHILQYPTRSALRPLVAAQGTGIINSRLKPKSGIIEVDIPIDTSKFYDAEKGDRWNKVDRQTFSGVLKKGQGRYMAGVFRDGELHVSSIESVAQLRPQFKYFDKHVNSEKEANRMIRTDPTKPREARTIQMSAKSSGDFAPKYSGALGARKIADEESFVDIQWFDRDSNESWDMADKFVTTNKRILDSSTTLKDYTDKLQ
SIO_010081: AWJ20_3731
subclass of: SO_0000673
so part of: AWJ20_3731
location: complement(85030..85836)
location: region:85030-85836:-1
so has part: feature:85030-85836:-1:exon

XP_018733414.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:85030-85836:-1:exon

AWJ20_3732
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: DBP7
locus tag: AWJ20_3732
so part of: sequence
location: <86579..>88897
location: region:86579-88897:1
so has part: feature:86579-88897:1:exon
subclass of: SO_0000010

30035786
type: Gene
SIO_000068: ncbigene

position:86579:1
position: 86579
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:88897:1
position: 88897
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:86579-88897:1:exon

AWJ20_3732
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: DBP7
locus tag: AWJ20_3732
product: Dbp7p
transcript id: XM_018880757.1
SIO_010081: AWJ20_3732
subclass of: SO_0000673
so part of: AWJ20_3732
location: <86579..>88897
location: region:86579-88897:1
so has part: feature:86579-88897:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:86579-88897:1:exon

AWJ20_3732
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: DBP7
locus tag: AWJ20_3732
inference: similar to AA sequence:KEGG_Orthology:K14806
note: Putative ATP-dependent RNA helicase of the DEAD-box family; involved in ribosomal biogenesis; required at post-transcriptional step for efficient retrotransposition; essential for growth under anaerobic conditions; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 9582098]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence ISS] [PMID 10322435]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9582098]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]
codon start: 1
product: Dbp7p
translation: MSDDGMLLNFSTEPSTSAVRKPVGSKVQGGRWKDRLNAKRAQVKQYEKENPEVRVARVAKERAIKEKAEIVRQKRTAGRNGGKKPPGTGTSEASGSGAGAGAGSGSGSNGSSRARMTNFKKPTAAQQKQHPGVNLNPEDKNTFVSSLFSSNPSLAENDAEDKPVESHEASNAPLKDDTTFEGLGVNSALTLQLSTKMKIPTPTRIQRAALPPLISSNRDLFIQAQTGSGKTLAYALPIIHRLMSTPDLTRESGLFALILTPTRELSTQIYSVLEKLVGACHWLVPGIVIGGEKKKSEKARIRKGINILVATPGRLCDHFDNTESLDLSQIRWVVLDEGDRLMELGFEEAITKILTKIGKTSMIHDTAKRWPQLPNKRVNILCSATMRDDVKRLGELSLSHAEWVTPDSVGEDSKKHLRSDANDNHEHIAPAQLIQQSAIVPAKLRLVTLAGLLKAITSAEKGSRTIVFFSCSDSVDFHFKAFTKGGTNRLKQRTSNNHDSDDEDDTSSATQPTVMTSVDLDNTVIHKLHGSLNQQLRTSTLSSFSAKDGAANGESYILFCTDVASRGLDLPHITQVIEYDPPFGMDDHLHRVGRTARAGKEGTSILFLLPGAEEKYLDVIKPNHPNGIHPRSYEDILKKGFGSKWDVDATTWHLNIERWLLEDASALQLAKRGYTSHIRAYTTHLSSEREIFNLRALHLGHLAKSFALRETPGKMSKQPSSKTDKTKPSSKKTKSSSGVAKPQPRGDADGNRRRMLAVAKSHAGMSEFNIGY
SIO_010081: AWJ20_3732
subclass of: SO_0000673
so part of: AWJ20_3732
location: 86579..88897
location: region:86579-88897:1
so has part: feature:86579-88897:1:exon

XP_018733415.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:86579-88897:1:exon

AWJ20_3733
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3733
so part of: sequence
location: <93699..>95492
location: region:93699-95492:1
so has part: feature:93699-95492:1:exon
subclass of: SO_0000010

30035787
type: Gene
SIO_000068: ncbigene

position:93699:1
position: 93699
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:95492:1
position: 95492
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:93699-95492:1:exon

AWJ20_3733
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3733
product: hypothetical protein
transcript id: XM_018880758.1
SIO_010081: AWJ20_3733
subclass of: SO_0000673
so part of: AWJ20_3733
location: <93699..>95492
location: region:93699-95492:1
so has part: feature:93699-95492:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:93699-95492:1:exon

AWJ20_3733
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3733
codon start: 1
product: hypothetical protein
translation: MATLIPQFPVGNNSNHNTSGTSAPSENQILARLDAYLPALNTGLMDGKIQDVIIKHPLVRTLLVPECDLEARRRCIALISKALAAATPVLPLILQDHQAKQDQKKKRQKSNAGSRKADANAQADSPRIPKLSLDAQSRLITIVASMAERDPLIRFWMNHHVQYQARSQAQAQAQSATPEEGSRKRKYSTPAGSGAAAAAAASSAVGGSGMSKHLEMSTFDLYLKIKTSKELLADLADRIQGAVCKAFWDCWDEIFITLAEVIGAENLQQADKGRIFRPCGDAAIYLNNLKVTKKRQVEQKRRLSMLEGNTSANTRPGHQAFYMGNNNMTTVSPKNILGQQPGASPIQVTGQIPSQFSSQNQNIPPLVPASPFSPDQFLNEFTLNSSIPGTTATTTAAASSIPTPSASGASMAFPFPLSPEKSSGSPDSTSSMILGINTASAVSNVPTPPGSTNGSTSSHPNPFNIASASTSVNGSKPLSGSDANDLEFMMQDISYDSKFDQYLGAFTTLDDADQQSGHQANPSHTPSSNTAANSSTSPAATTKPLPSNASDISTPQTSAGSPTNTPGGSHLNLRQRIKLMEEGRMPEENPSPSNIVW
SIO_010081: AWJ20_3733
subclass of: SO_0000673
so part of: AWJ20_3733
location: 93699..95492
location: region:93699-95492:1
so has part: feature:93699-95492:1:exon

XP_018733416.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:93699-95492:1:exon

AWJ20_3734
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3734
so part of: sequence
location: <98087..>100627
location: region:98087-100627:1
so has part: feature:98087-100627:1:exon
subclass of: SO_0000010

30035788
type: Gene
SIO_000068: ncbigene

position:98087:1
position: 98087
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:100627:1
position: 100627
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:98087-100627:1:exon

AWJ20_3734
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3734
product: hypothetical protein
transcript id: XM_018880759.1
SIO_010081: AWJ20_3734
subclass of: SO_0000673
so part of: AWJ20_3734
location: <98087..>100627
location: region:98087-100627:1
so has part: feature:98087-100627:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:98087-100627:1:exon

AWJ20_3734
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3734
codon start: 1
product: hypothetical protein
translation: MSSSIAASGGSSRTFSKSELDHSTSSYAVLGTSPISDGGLLNSKGFGPENGQQSRINMEGSNQRGENYDPRKTVNDGGTTVTYKLHKSCDYCRHRKIKCVRRPGSEICDHCRICEVECTFSRKMPSKKRKLRSARIVASLRDRDRLGYEGSGIGSADDTNDSMGMSIRGRGSVSEEAVDNGNFIAKEESTASPKDRNHLTAVKIEPESADSEVGSGEGAIGNATVPGVPSSVKGVSVSTPIMSYTQQGTGMTPLTAGGWYYEPFFDLIYSAKASPMEDPSNGKSGAPSPLPAESVNEESSAFPQASEGLQGNSKTDVFAIHGHEVHSTNHVIPTTNHGVRGDHDDTHANNRKQTENNYPSINGSTDSPHSQYTGSPNIAEMALSGYASRPNTETNSNNNINTNGNANTSSNEPISASVSVTTPGGTAHALPLDNNSNLTSLAIIATEHNASLTVPSNHSRRLPEDPQAVRDAYTLYIEPCTPFFPPEFYDASDMSTLARCCMSLASFSSPNSVAPVGSIAMLYEVVDQLVAQETVWNEFSLSAVFCVLVRYKLPYDRVSRAINQFIKKGPQHYPSPGINYNLLIGALSAYAWNSLVAYDNLRPPNNDEAEIIDIYETVTSNISEDTFAYHFLYVSTLLCRFKVLMILPDEVYSPESLASGSPQHDDAWYSTRKSLIRLEYELLLWPVRLPKHLTVVKDDLIATPGALILHVLHNTVLLAYYIQAIRHKDPYGRMLSILPVPGLLQFLCGMAASSFKCQPDIIEKWPIIRDCLVITARLMLELYNQTEYENCKVALALYQDSQTAPGLYNSIQKVLAAVDWAANDKDGAALYWIFRDVRSMSLQHLL
SIO_010081: AWJ20_3734
subclass of: SO_0000673
so part of: AWJ20_3734
location: 98087..100627
location: region:98087-100627:1
so has part: feature:98087-100627:1:exon

XP_018733417.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:98087-100627:1:exon

AWJ20_3735
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: HHT2
locus tag: AWJ20_3735
so part of: sequence
location: complement(<101761..>102183)
location: region:101761-102183:-1
so has part: feature:101761-102183:-1:exon
subclass of: SO_0000010

30035789
type: Gene
SIO_000068: ncbigene

position:101761:-1
position: 101761
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:102183:-1
position: 102183
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:101761-102183:-1:exon

AWJ20_3735
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: HHT2
locus tag: AWJ20_3735
product: histone H3
transcript id: XM_018880760.1
SIO_010081: AWJ20_3735
subclass of: SO_0000673
so part of: AWJ20_3735
location: complement(<101761..>102183)
location: region:101761-102183:-1
so has part: feature:101761-102183:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:101761-102183:-1:exon

AWJ20_3735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: HHT2
locus tag: AWJ20_3735
inference: similar to AA sequence:KEGG_Orthology:K11253
note: Histone H3; core histone protein required for chromatin assembly, part of heterochromatin-mediated telomeric and HM silencing; one of two identical histone H3 proteins (see HHT2); regulated by acetylation, methylation, and phosphorylation; H3K14 acetylation plays an important role in the unfolding of strongly positioned nucleosomes during repair of UV damage; GO_component: GO:0043505 - centromere-specific nucleosome [Evidence IDA] [PMID 22693454]; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0000788 - nuclear nucleosome [Evidence TAS] [PMID 2275823]; GO_component: GO:0000786 - nucleosome [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence TAS] [PMID 2275823]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence TAS] [PMID 2275823]; GO_process: GO:0070911 - global genome nucleotide-excision repair [Evidence IMP] [PMID 21460225]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence IGI] [PMID 19917722]; GO_process: GO:0006334 - nucleosome assembly [Evidence IEA]; GO_process: GO:0009303 - rRNA transcription [Evidence IMP] [PMID 16002464]; GO_process: GO:0043935 - sexual sporulation resulting in formation of a cellular spore [Evidence IMP] [PMID 20713519]
codon start: 1
product: histone H3
translation: MARTKSTVARKSTGGKAPRKQIASKAARKSAPSTAAPGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQKKDIQLARRLRGERI
SIO_010081: AWJ20_3735
subclass of: SO_0000673
so part of: AWJ20_3735
location: complement(101761..102183)
location: region:101761-102183:-1
so has part: feature:101761-102183:-1:exon

XP_018733418.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:101761-102183:-1:exon

AWJ20_3736
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: HHF2
locus tag: AWJ20_3736
so part of: sequence
location: <103937..>104248
location: region:103937-104248:1
so has part: feature:103937-104248:1:exon
subclass of: SO_0000010

30035790
type: Gene
SIO_000068: ncbigene

position:103937:1
position: 103937
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:104248:1
position: 104248
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:103937-104248:1:exon

AWJ20_3736
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: HHF2
locus tag: AWJ20_3736
product: histone H4
transcript id: XM_018880761.1
SIO_010081: AWJ20_3736
subclass of: SO_0000673
so part of: AWJ20_3736
location: <103937..>104248
location: region:103937-104248:1
so has part: feature:103937-104248:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:103937-104248:1:exon

AWJ20_3736
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: HHF2
locus tag: AWJ20_3736
inference: similar to AA sequence:KEGG_Orthology:K11254
note: Histone H4; core histone protein required for chromatin assembly and chromosome function; one of two identical histone proteins (see also HHF2); contributes to telomeric silencing; N-terminal domain involved in maintaining genomic integrity; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0000788 - nuclear nucleosome [Evidence TAS] [PMID 2275823]; GO_component: GO:0000786 - nucleosome [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence TAS] [PMID 2275823]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence TAS] [PMID 2275823]; GO_process: GO:0034729 - histone H3-K79 methylation [Evidence IMP] [PMID 18158898]; GO_process: GO:0006334 - nucleosome assembly [Evidence IEA]; GO_process: GO:0043935 - sexual sporulation resulting in formation of a cellular spore [Evidence IMP] [PMID 20713519]; GO_process: GO:0061587 - transfer RNA gene-mediated silencing [Evidence IMP] [PMID 23707796]
codon start: 1
product: histone H4
translation: MSGRGKGGKGLGKGGAKRHRKILRDNIQGITKPAIRRLARRGGVKRISALIYEETRGVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG
SIO_010081: AWJ20_3736
subclass of: SO_0000673
so part of: AWJ20_3736
location: 103937..104248
location: region:103937-104248:1
so has part: feature:103937-104248:1:exon

XP_018733419.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:103937-104248:1:exon

AWJ20_3737
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RKI1
locus tag: AWJ20_3737
so part of: sequence
location: <104583..>105596
location: region:104583-105596:1
so has part: feature:104583-105596:1:exon
subclass of: SO_0000010

30035791
type: Gene
SIO_000068: ncbigene

position:104583:1
position: 104583
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:105596:1
position: 105596
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:104583-105596:1:exon

AWJ20_3737
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RKI1
locus tag: AWJ20_3737
product: ribose-5-phosphate isomerase RKI1
transcript id: XM_018880762.1
SIO_010081: AWJ20_3737
subclass of: SO_0000673
so part of: AWJ20_3737
location: <104583..>105596
location: region:104583-105596:1
so has part: feature:104583-105596:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:104583-105596:1:exon

AWJ20_3737
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RKI1
locus tag: AWJ20_3737
inference: similar to AA sequence:KEGG_Orthology:K01807
note: Ribose-5-phosphate ketol-isomerase; catalyzes the interconversion of ribose 5-phosphate and ribulose 5-phosphate in the pentose phosphate pathway; participates in pyridoxine biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0004751 - ribose-5-phosphate isomerase activity [Evidence IEA,IEA]; GO_function: GO:0004751 - ribose-5-phosphate isomerase activity [Evidence IMP,ISS] [PMID 8929392]; GO_process: GO:0006098 - pentose-phosphate shunt [Evidence IEA]; GO_process: GO:0006098 - pentose-phosphate shunt [Evidence IGI] [PMID 8929392]; GO_process: GO:0009052 - pentose-phosphate shunt, non-oxidative branch [Evidence IEA]; GO_process: GO:0008615 - pyridoxine biosynthetic process [Evidence IMP] [PMID 14690456]
codon start: 1
product: ribose-5-phosphate isomerase RKI1
translation: MYGRALGLGQGGGGARAPLSRIGRTPAGLVRPGACAASGLVVSRAGGCGEGLGVKDVSSGGKRPSSIQRSLLHRLRPGPSCVFIRSMSLRLGEISLVEKAKRAAAYKAVDEHFPADAKVVGIGSGSTVIYAVERIAQLAELRGIDLSKVTFVPTGFQSKQLIIGAGLNVASIDQFSVGDLDIVIDGADEVDDSLNCIKGGGACLFQEKLVGQCARKFVIVADSSKKSHKLGSKWIQGVPIEVIPMAYPKVEADLLRLGAKQITLRQGGKAKAGPVVTDNGNFILDTHFGSIEPSEVRNLDIKIKLLVGVVETGLFDYGAVAYFGETDGTASTFTRPE
SIO_010081: AWJ20_3737
subclass of: SO_0000673
so part of: AWJ20_3737
location: 104583..105596
location: region:104583-105596:1
so has part: feature:104583-105596:1:exon

XP_018733420.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:104583-105596:1:exon

AWJ20_3738
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: APM1
locus tag: AWJ20_3738
so part of: sequence
location: complement(<108260..>109582)
location: region:108260-109582:-1
so has part: feature:108260-109582:-1:exon
subclass of: SO_0000010

30035792
type: Gene
SIO_000068: ncbigene

position:108260:-1
position: 108260
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:109582:-1
position: 109582
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:108260-109582:-1:exon

AWJ20_3738
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: APM1
locus tag: AWJ20_3738
product: Apm1p
transcript id: XM_018880763.1
SIO_010081: AWJ20_3738
subclass of: SO_0000673
so part of: AWJ20_3738
location: complement(<108260..>109582)
location: region:108260-109582:-1
so has part: feature:108260-109582:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:108260-109582:-1:exon

AWJ20_3738
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: APM1
locus tag: AWJ20_3738
inference: similar to AA sequence:KEGG_Orthology:K12393
note: Mu1-like medium subunit of the AP-1 complex; binds clathrin; involved in clathrin-dependent Golgi protein sorting; the AP-1 complex is the clathrin-associated protein complex; GO_component: GO:0030121 - AP-1 adaptor complex [Evidence IPI,ISS] [PMID 10564262]; GO_component: GO:0030131 - clathrin adaptor complex [Evidence IEA]; GO_component: GO:0030665 - clathrin-coated vesicle membrane [Evidence IEA]; GO_component: GO:0005905 - coated pit [Evidence IEA,IEA]; GO_component: GO:0016023 - cytoplasmic membrane-bounded vesicle [Evidence IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0030276 - clathrin binding [Evidence IPI,ISS] [PMID 10564262]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IMP] [PMID 17003107]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IPI,ISS] [PMID 10564262]
codon start: 1
product: Apm1p
translation: MASAIFFLDLKGKHLLSRNYRGDIPMSAVDKFPILLMEAEEETSIVPPTISHEGVNYLYIQHNNLYLLALTKRNSNAAQILLFLHKIVEVLTEYFKELEEESIRDNFVVIYELLDEMMDFGYPQTTDTKILQEYITQESHALDVQARPPVAVTNAVSWRSEGITYRKNEAFLDVVESVNLLISASGQVLRSEILGSVQMKCFLSGMPELRLGLNDKVIFNHQSNTTGQSIGSSSGGGSSGKVIEMEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTNVKPLILVDCRVTNFSSSRIEIIVKARAQFKKRSNANNVEITIPVPDDADSPKFKTTAGNVKWHPEKSAIIWRIKQFGGGREFNMRAELGLPSVKDSDYANAKIKPPITVNFTIPYFTTSGIQVRYLKIIEPKLQYQSYPWVRYITKSGNDYTIRMS
SIO_010081: AWJ20_3738
subclass of: SO_0000673
so part of: AWJ20_3738
location: complement(108260..109582)
location: region:108260-109582:-1
so has part: feature:108260-109582:-1:exon

XP_018733421.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:108260-109582:-1:exon

AWJ20_3739
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3739
so part of: sequence
location: <108522..>108920
location: region:108522-108920:1
so has part: feature:108522-108920:1:exon
subclass of: SO_0000010

30035793
type: Gene
SIO_000068: ncbigene

position:108522:1
position: 108522
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:108920:1
position: 108920
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:108522-108920:1:exon

AWJ20_3739
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3739
product: hypothetical protein
transcript id: XM_018880764.1
SIO_010081: AWJ20_3739
subclass of: SO_0000673
so part of: AWJ20_3739
location: <108522..>108920
location: region:108522-108920:1
so has part: feature:108522-108920:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:108522-108920:1:exon

AWJ20_3739
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3739
codon start: 1
product: hypothetical protein
translation: MMADFSGCHFTFPAVVLNLGESASSGTGIVISTLLAFDRFLNCARALTMISIRDEEKLVTRQSTRISGLTLVFRRYDMSSNSPSGGINEIVRSFSNRDRRTHWWNLTSSISMTFPDEPPPEDDPMLCPVVLD
SIO_010081: AWJ20_3739
subclass of: SO_0000673
so part of: AWJ20_3739
location: 108522..108920
location: region:108522-108920:1
so has part: feature:108522-108920:1:exon

XP_018733422.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:108522-108920:1:exon

AWJ20_3740
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3740
so part of: sequence
location: complement(<111418..>113187)
location: region:111418-113187:-1
so has part: feature:111418-113187:-1:exon
subclass of: SO_0000010

30035795
type: Gene
SIO_000068: ncbigene

position:111418:-1
position: 111418
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:113187:-1
position: 113187
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:111418-113187:-1:exon

AWJ20_3740
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3740
product: hypothetical protein
transcript id: XM_018880766.1
SIO_010081: AWJ20_3740
subclass of: SO_0000673
so part of: AWJ20_3740
location: complement(<111418..>113187)
location: region:111418-113187:-1
so has part: feature:111418-113187:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:111418-113187:-1:exon

AWJ20_3740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3740
codon start: 1
product: hypothetical protein
translation: MVKIALAPAPPQPLASKRPVAAGTVPQNNVPRIAAKKPLVAPSPRAVLSAAASNAVSSIPTNNPVKPVLTTASALASSTRSRTSVSAASPVAVSSPTATAASSPVDTTGAAPVSKISTSKVWVLPPRPKPGRKPSVDTPQNKRKAQNRAAQRAFRERRAAMVGELEEKLNELTKERDAREARLEAQLKAVTRENENLKRSVRDMQAQLAKQNVSYQMASPPMSSHESPMDILDRVLEERLPVPDKSRTNSSSDACGVCIKDDCICESVGIKARRTSNQPVSAVSMSTTRSSISSITGTSSAFKTNDQSNAAATLVASSVTAPAVSLKRNQPESNDDEPYEIDFTEMFSRPAKKQAPPLLVPSPVPVPKHRTSSTRTVLKPPADRCGFCSDGNPCMCAEAEAEAQAAGDGGHFINDIEEDNTLPPIVLNNMWSSSYQNTNKLPALHPGPSREVPPSQQPPSPQVALPAASVSSITAPSYECTGNPGTCMQCQTDPMSTLFCTTLASRPEKGDSEKKKAVTTPSTPTEKTRAGSSSFISASAAYRTLSRHKDFRSADFGALVGKLNTRGMQVEVNSVANVLRELDRKLYSS
SIO_010081: AWJ20_3740
subclass of: SO_0000673
so part of: AWJ20_3740
location: complement(111418..113187)
location: region:111418-113187:-1
so has part: feature:111418-113187:-1:exon

XP_018733423.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:111418-113187:-1:exon

AWJ20_3741
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PET127
locus tag: AWJ20_3741
so part of: sequence
location: <115364..>117727
location: region:115364-117727:1
so has part: feature:115364-117727:1:exon
subclass of: SO_0000010

30035796
type: Gene
SIO_000068: ncbigene

position:115364:1
position: 115364
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:117727:1
position: 117727
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:115364-117727:1:exon

AWJ20_3741
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PET127
locus tag: AWJ20_3741
product: Pet127p
transcript id: XM_018880767.1
SIO_010081: AWJ20_3741
subclass of: SO_0000673
so part of: AWJ20_3741
location: <115364..>117727
location: region:115364-117727:1
so has part: feature:115364-117727:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:115364-117727:1:exon

AWJ20_3741
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PET127
locus tag: AWJ20_3741
note: Protein with a role in 5'-end processing of mitochondrial RNAs; located in the mitochondrial membrane; GO_component: GO:0005740 - mitochondrial envelope [Evidence IDA] [PMID 9111353]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000964 - mitochondrial RNA 5'-end processing [Evidence IMP] [PMID 18086665]; GO_process: GO:0000964 - mitochondrial RNA 5'-end processing [Evidence IMP] [PMID 9111353]
codon start: 1
product: Pet127p
translation: MLRTGGLGSLRLRIYSEYAPKFLSPGNGLFYTRAFSLSSTVLKDIDGLDSLHLLEKETYRDIKRQRPAKGKKSPPGPNTRPGSITPKHFGKKRPSRAPPSRVTLGQREPGAKPTFRSRREYEKKNEEQVNRNRQNSSAKVPKPSSAEVQEYIAKSPEQWKSRRTLTDPKRFSKDNAGSSSETTNQKISPANSPFPNFFPHETPYFRSFELDSSQLSYEPLEVPDQPPVPKLAHNLDRVLFSPGVHVLKDRRSNVYNFTPYLENIMSIKDFDFDFIAKYVPSGKDSILSKLAKENGKKYTGSTSSLTSVLSQFHHLLSHRRKPHTMALSKYFQSQQVAFSAIQTQPVSIFLRYNPNTDTHSIDSDKSYSGDIIVSVLGHQLEAMLTTEEEEFRNYHKSLSHKLDSSKKGGLNTYNYTQSGDFLMRSQLDCYDERLPGTGTFDLKTRAVCAVRHDMDYTQIHDGSDYQITKIDGEFESFSREWFELIRSTMFKYSLQARIGRMDGIFLAYHNVRRMFGFQYVPLSEIDQIYHTSDLIESQQDLRDIDPSNVSSFVPLDEQIATSGPIIAENEFKLSLKMFNEILDKIVASHEPAASFNLVFHTVSTGRMQVFVKPMLEKDIEVIQETGCDTEPKTGEEYSNNSDPHTILMHGNKNPEVLPPDVKVYQVDIRTYVNDKFVPGDKYPHLSSDSDVWKVQCEMSQLRQQGAERRFSRTFSMHKIENRITSVPQTERLDEEQEETIRNEALSKLSPPNAKQGYLRFLGAKGERLQREWEAQHGHKEKHVWRPS
SIO_010081: AWJ20_3741
subclass of: SO_0000673
so part of: AWJ20_3741
location: 115364..117727
location: region:115364-117727:1
so has part: feature:115364-117727:1:exon

XP_018733424.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:115364-117727:1:exon

AWJ20_3742
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: THI73
locus tag: AWJ20_3742
so part of: sequence
location: complement(<117861..>118880)
location: region:117861-118880:-1
so has part: feature:117861-118880:-1:exon
subclass of: SO_0000010

30035797
type: Gene
SIO_000068: ncbigene

position:117861:-1
position: 117861
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:118880:-1
position: 118880
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:117861-118880:-1:exon

AWJ20_3742
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: THI73
locus tag: AWJ20_3742
product: Thi73p
transcript id: XM_018880768.1
SIO_010081: AWJ20_3742
subclass of: SO_0000673
so part of: AWJ20_3742
location: complement(<117861..>118880)
location: region:117861-118880:-1
so has part: feature:117861-118880:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:117861-118880:-1:exon

AWJ20_3742
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: THI73
locus tag: AWJ20_3742
note: Putative plasma membrane permease; proposed to be involved in carboxylic acid uptake and repressed by thiamine; substrate of Dbf2p/Mob1p kinase; transcription is altered if mitochondrial dysfunction occurs; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 16850348]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 10869563]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0005215 - transporter activity [Evidence ISS] [PMID 10869563]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence ISS] [PMID 10869563]
codon start: 1
product: Thi73p
translation: MWYKKAEQGKRIGAFYVMNSVTLIAAGIISYAASFAKTAFASWRIFLLCMGLVTVFCGICVFLFLPDSIVRSKGFTDEEKVAALLRVKDEQSGTQNSKLKRYQMVEAVSDPKVWFVVLSVFLFSIPNGAITVFNSIIINSYGFGSQETLIVGAPAGVVTGAAVIIIQYYSDKTQNRTLISIWYFIPSIVGLAIMIALGDREKTLSMKAGLLIASYLSQVFGGGLALFLSWNASNIAGHSKKALVNALTFIAFPLGNILGTQTFQNKDAPMYIPGKISIMACLCAQVVVSTVWFFVNKYYNKKKQTFLDTLNVYEYEGLRMKMEFSDETDMRNPFFKYTK
SIO_010081: AWJ20_3742
subclass of: SO_0000673
so part of: AWJ20_3742
location: complement(117861..118880)
location: region:117861-118880:-1
so has part: feature:117861-118880:-1:exon

XP_018733425.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:117861-118880:-1:exon

AWJ20_3743
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: HHO1
locus tag: AWJ20_3743
so part of: sequence
location: complement(<120325..>120753)
location: region:120325-120753:-1
so has part: feature:120325-120753:-1:exon
subclass of: SO_0000010

30035798
type: Gene
SIO_000068: ncbigene

position:120325:-1
position: 120325
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:120753:-1
position: 120753
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:120325-120753:-1:exon

AWJ20_3743
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: HHO1
locus tag: AWJ20_3743
product: histone H1
transcript id: XM_018880769.1
SIO_010081: AWJ20_3743
subclass of: SO_0000673
so part of: AWJ20_3743
location: complement(<120325..>120753)
location: region:120325-120753:-1
so has part: feature:120325-120753:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:120325-120753:-1:exon

AWJ20_3743
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: HHO1
locus tag: AWJ20_3743
inference: similar to AA sequence:KEGG_Orthology:K11275
note: Histone H1, linker histone with roles in meiosis and sporulation; decreasing levels early in sporulation may promote meiosis, and increasing levels during sporulation facilitate compaction of spore chromatin; binds to promoters and within genes in mature spores; may be recruited by Ume6p to promoter regions, contributing to transcriptional repression outside of meiosis; suppresses DNA repair involving homologous recombination; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 22586276]; GO_component: GO:0000788 - nuclear nucleosome [Evidence IPI] [PMID 11574687]; GO_component: GO:0000786 - nucleosome [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9046096]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IPI] [PMID 11574687]; GO_process: GO:0030261 - chromosome condensation [Evidence IMP] [PMID 22586276]; GO_process: GO:0045910 - negative regulation of DNA recombination [Evidence IGI,IMP] [PMID 12820979]; GO_process: GO:0031936 - negative regulation of chromatin silencing [Evidence IGI] [PMID 19017647]; GO_process: GO:0006334 - nucleosome assembly [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IMP] [PMID 11574687]
codon start: 1
product: histone H1
translation: MVKDAILQLKERSGSSRQAIKKYIQSTHSISAANFDSLLNAAIRKGVVSGDFVQPKGPSGPVKLQKKEVVKPAKKPVAKKTETKPAAKAKAKTTTKPKTVAKKPAAKKTEKKPAVKATKAKATASKVKKAAPKKKATATKAK
SIO_010081: AWJ20_3743
subclass of: SO_0000673
so part of: AWJ20_3743
location: complement(120325..120753)
location: region:120325-120753:-1
so has part: feature:120325-120753:-1:exon

XP_018733426.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:120325-120753:-1:exon

AWJ20_3744
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SEF1
locus tag: AWJ20_3744
so part of: sequence
location: <126947..>128770
location: region:126947-128770:1
so has part: feature:126947-128770:1:exon
subclass of: SO_0000010

30035799
type: Gene
SIO_000068: ncbigene

position:126947:1
position: 126947
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:128770:1
position: 128770
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:126947-128770:1:exon

AWJ20_3744
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SEF1
locus tag: AWJ20_3744
product: Sef1p
transcript id: XM_018880770.1
SIO_010081: AWJ20_3744
subclass of: SO_0000673
so part of: AWJ20_3744
location: <126947..>128770
location: region:126947-128770:1
so has part: feature:126947-128770:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:126947-128770:1:exon

AWJ20_3744
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SEF1
locus tag: AWJ20_3744
note: Putative transcription factor; has homolog in Kluyveromyces lactis; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]
codon start: 1
product: Sef1p
translation: MKAKACTECRQNKLRCLYPPSGIGSCQRCFKKELACVFDPKFRRVSKRKLAERKSATGSAESEIRSNGVSSSSSTTNLNPSIPSSAPPLHSIAITQDGPTGEPPKTSLDILDMPEQLEVTPCKSDKIIEGSISITSEDVTRLFNIFLKNHLYYMPLDICLDCEAIYARCELLFWTILALAGRDFPLISHIQEKVKQLLKDTLFEAVRSVEVVQALLLISGWPLPYKTQLDDRSFTCSTLALQYSMRLGLHRPTFAHEFSSRPEVLQFGSFKRMTTWMGCFLADGREAIRLGLPTFLGADYTLRQSFQDVRIPETLRNLCILAEHTASMNKTLGSGGENLTGLLEPSPRLELVKQYIGKLDSLFATDQFLRTRNTYIEVVYLTARLQVLSYILTEDILSWSVDALEFVNIALHDASRVIRVIAHLPGLEFAPTMVFRYIIYAALVLLRILRTCEAVALDRKSILSDLTSVYQTLDRLHSGLRNDEHILMTKNFLQIYSNLKDVKVTQPIKSRGPANIVYDAVRITREAQANHLRQQEKGLLTRQQGNQTEEHNRQENTSFLASLLQNGGFGAVPNENGETAMLPADPTMVPEIDDQWFNEIFNLVYYM
SIO_010081: AWJ20_3744
subclass of: SO_0000673
so part of: AWJ20_3744
location: 126947..128770
location: region:126947-128770:1
so has part: feature:126947-128770:1:exon

XP_018733427.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:126947-128770:1:exon

AWJ20_3745
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: HIS2
locus tag: AWJ20_3745
so part of: sequence
location: <129030..>129977
location: region:129030-129977:1
so has part: feature:129030-129977:1:exon
subclass of: SO_0000010

30035800
type: Gene
SIO_000068: ncbigene

position:129030:1
position: 129030
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:129977:1
position: 129977
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:129030-129977:1:exon

AWJ20_3745
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: HIS2
locus tag: AWJ20_3745
product: histidinol-phosphatase
transcript id: XM_018880771.1
SIO_010081: AWJ20_3745
subclass of: SO_0000673
so part of: AWJ20_3745
location: <129030..>129977
location: region:129030-129977:1
so has part: feature:129030-129977:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:129030-129977:1:exon

AWJ20_3745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: HIS2
locus tag: AWJ20_3745
inference: similar to AA sequence:KEGG_Orthology:K04486
note: Histidinolphosphatase; catalyzes the eighth step in histidine biosynthesis; mutations cause histidine auxotrophy and sensitivity to Cu, Co, and Ni salts; transcription is regulated by general amino acid control; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004401 - histidinol-phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004401 - histidinol-phosphatase activity [Evidence IMP] [PMID 14190241]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA,IEA]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IMP] [PMID 14190241]
codon start: 1
product: histidinol-phosphatase
translation: MHSHHSHSSDHCQHASSPLDDMIQRAIDERLLVLCLTEHMPRIDPNHLYPEEIKSNTTVEQLKCVFDTYYKRARQAQIEYKDRIDLLVGFESETISDEYLDYIDELRKQYKFDMVVGSVHHVSRIPIDYNEETWIRALDATVGTLHSKTDNISDESLQKYFEEYFDLQYLMLKRLKPSVVGHFDLIKLCAPKGVVPESLQSWPSVWEKITRNVKLAVSQGGLFEVNSAAVRKGWDTPYPGRDIASLIHELGGEFCLSDDSHQVGHVAQNYKACIRYLKELGVERVYYLKTKRLADTISIIKDSVSLQELDEWATL
SIO_010081: AWJ20_3745
subclass of: SO_0000673
so part of: AWJ20_3745
location: 129030..129977
location: region:129030-129977:1
so has part: feature:129030-129977:1:exon

XP_018733428.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:129030-129977:1:exon

AWJ20_3746
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3746
so part of: sequence
location: complement(<130088..>131074)
location: region:130088-131074:-1
so has part: feature:130088-131074:-1:exon
subclass of: SO_0000010

30035801
type: Gene
SIO_000068: ncbigene

position:130088:-1
position: 130088
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:131074:-1
position: 131074
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:130088-131074:-1:exon

AWJ20_3746
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3746
product: putative ribonuclease H1
transcript id: XM_018880772.1
SIO_010081: AWJ20_3746
subclass of: SO_0000673
so part of: AWJ20_3746
location: complement(<130088..>131074)
location: region:130088-131074:-1
so has part: feature:130088-131074:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:130088-131074:-1:exon

AWJ20_3746
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3746
codon start: 1
product: putative ribonuclease H1
translation: MPSQSQKYASCWAGLRNVSGSNIDNRIKWLDRLDSFRLFSQVCEDDSVSSDDDGTDDGYFSRDEEDYSDNDSFSDDDNLGYEDSGDLFGYSTSRIKIYAVKRGREKGIFSELQTALDATYRFSHCAMKSFTNFQAACDYMKYRYYAVQKGHVKGIFRLWANAVEASAMYPGSRMKSFKSLKLAKLFLALTDKSSVVFTDGTIVDGPDRGPWYGIFYGPEHPENEFRRQPGKIQTVERAKIKAISRVLTKTLMCGQKYQQIHSSCKSTVDALTSNESPLPNRDLILNCKVKLKDLAAIGVRLQIIGDQNKDKIDEYREVRELINKAARQ
SIO_010081: AWJ20_3746
subclass of: SO_0000673
so part of: AWJ20_3746
location: complement(130088..131074)
location: region:130088-131074:-1
so has part: feature:130088-131074:-1:exon

XP_018733429.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:130088-131074:-1:exon

AWJ20_3747
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3747
so part of: sequence
location: complement(<132003..>134147)
location: region:132003-134147:-1
so has part: feature:132003-134147:-1:exon
subclass of: SO_0000010

30035802
type: Gene
SIO_000068: ncbigene

position:132003:-1
position: 132003
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:134147:-1
position: 134147
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:132003-134147:-1:exon

AWJ20_3747
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3747
product: proline--tRNA ligase
transcript id: XM_018880773.1
SIO_010081: AWJ20_3747
subclass of: SO_0000673
so part of: AWJ20_3747
location: complement(<132003..>134147)
location: region:132003-134147:-1
so has part: feature:132003-134147:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:132003-134147:-1:exon

AWJ20_3747
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3747
inference: similar to AA sequence:KEGG_Orthology:K01881
note: Prolyl-tRNA synthetase; N-terminal domain shows weak homology to prokaryotic posttransfer editing domain, but does not possess posttransfer editing activity; may interact with ribosomes, based on co-purification experiments; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0002161 - aminoacyl-tRNA editing activity [Evidence IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004827 - proline-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004827 - proline-tRNA ligase activity [Evidence IDA] [PMID 16864571]; GO_process: GO:0006433 - prolyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006433 - prolyl-tRNA aminoacylation [Evidence IDA] [PMID 16864571]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence IEA]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]
codon start: 1
product: proline--tRNA ligase
translation: MSSLIKDLEGLSLTHEAPANNEEWASILAKSDVAKFAGPYELTKVLVFKPKTAKTATPVPVVVVALNSTQTASNIVAKAAGVKEPRLANKDLINEFFGTEPQNVSPISITKENASKLKILIDSKAAEKSTLLAIHTDSNAKTAFITGDKLIEAYESIAADVTVVDFAKEAAAAAASATPTAGSGADKSAKSGSAGAVAKASANEGKIDGAALIGITSDKELDFPGWYQQIVTKAELLDYYDVSGCYIMRPGSYSIWEKVQNYLDTRIKSIGVQNAYFPMFVSSRVLEKEKDHIEGFAPEVAWVTKAGQSDLEEPLAIRPTSETVMYPYYAKWIRSYRDLPLRLNQWNSVVRWEFKHPQPFLRTREFLWQEGHTAHLTKEAAAEEVLQILEWYAGVYEELLAVPVIKGTKTDKEKFAGGLYTTTCEGYIPTTGRGIQGATSHALGQNFSKMFNIVVEDPEGSDKPKINVWQNSWGLSTRVIGVMVMIHSDNKGLVLPPRVASNQVAVIPVGITAKTTSDERDAIINGAKNVEKTIGDAGVRVFGDYRDNYSPGWKFADAELKGVPLRVEFGPADLKKNQVVAVRRDNGVKTVIPIASLADEIPKLLETIQADLYTKAKKQFDEHIVPVTTVAEMTPLLNKKNILLAPFCGEEECEDSIKETTARRDDDEEVDEKAPSMGAKSLCIPFEQPELKEGTKCVNCDRLAKAHTLFGRSY
SIO_010081: AWJ20_3747
subclass of: SO_0000673
so part of: AWJ20_3747
location: complement(132003..134147)
location: region:132003-134147:-1
so has part: feature:132003-134147:-1:exon

XP_018733430.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:132003-134147:-1:exon

AWJ20_3748
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: DED81
locus tag: AWJ20_3748
so part of: sequence
location: <134668..>136368
location: region:134668-136368:1
so has part: feature:134668-136368:1:exon
subclass of: SO_0000010

30035803
type: Gene
SIO_000068: ncbigene

position:134668:1
position: 134668
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:136368:1
position: 136368
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:134668-136368:1:exon

AWJ20_3748
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: DED81
locus tag: AWJ20_3748
product: asparagine--tRNA ligase DED81
transcript id: XM_018880774.1
SIO_010081: AWJ20_3748
subclass of: SO_0000673
so part of: AWJ20_3748
location: <134668..>136368
location: region:134668-136368:1
so has part: feature:134668-136368:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:134668-136368:1:exon

AWJ20_3748
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: DED81
locus tag: AWJ20_3748
inference: similar to AA sequence:KEGG_Orthology:K01893
note: Cytosolic asparaginyl-tRNA synthetase; required for protein synthesis, catalyzes the specific attachment of asparagine to its cognate tRNA; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IC] [PMID 9605503]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004816 - asparagine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004816 - asparagine-tRNA ligase activity [Evidence IDA,ISS] [PMID 9605503]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006421 - asparaginyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006421 - asparaginyl-tRNA aminoacylation [Evidence IDA,IGI,ISS] [PMID 9605503]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]
codon start: 1
product: asparagine--tRNA ligase DED81
translation: MSESIEKPLESLSVSGAAVYVNEATGIDGATADGSEKSPYQTAAYALYSSKSENILVAKKLEDGTVSYDKITPSAIKKARKGADGLAKKAEKAAKQAEAQQLRDAEEAKKIEAAKSISLKQDPTLPKAKVIKLRVAEQHRLQRVQVNGWIHRLRVQKGVAFIVLRDGTGFLQCVLSGDLANAYQTSTLTLESTVSIYGVIKPVPEGQSAPGGHELIADYYDIVGLAPSGDEAFTNKVQESADPSILLDQRHLALRGETLSAVMKVRATLLRAVREVYEEEGLLEVTPPCMVQTQVEGGSTLFGFQYYGEEAYLTQSSQLYLETCVPALGDVYCIQESFRAERSHTRRHLSEYTHIEAELGFLSFEDLLDHIERVISRTVAKVLADPVAGPLVKQLNPNFEPPKTPFMRLEYVKALDWLNEHGIPNEDGEKFKFGDDIAEAAERKMTDIIGVPILLNRFPLEIKSFYMKKCADDPRVTESVDVLMPGVGEITGGSMRIDNLEELLAGFKREGINPEPYYWFSDQRKYGSFPHGGYGLGTERILAWLCDRFTVRDCSLYPRFTGRCKP
SIO_010081: AWJ20_3748
subclass of: SO_0000673
so part of: AWJ20_3748
location: 134668..136368
location: region:134668-136368:1
so has part: feature:134668-136368:1:exon

XP_018733431.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:134668-136368:1:exon

AWJ20_3749
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SPS19
locus tag: AWJ20_3749
so part of: sequence
location: complement(<137503..>138333)
location: region:137503-138333:-1
so has part: feature:137503-138333:-1:exon
subclass of: SO_0000010

30035804
type: Gene
SIO_000068: ncbigene

position:137503:-1
position: 137503
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:138333:-1
position: 138333
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:137503-138333:-1:exon

AWJ20_3749
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SPS19
locus tag: AWJ20_3749
product: Sps19p
transcript id: XM_018880775.1
SIO_010081: AWJ20_3749
subclass of: SO_0000673
so part of: AWJ20_3749
location: complement(<137503..>138333)
location: region:137503-138333:-1
so has part: feature:137503-138333:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:137503-138333:-1:exon

AWJ20_3749
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SPS19
locus tag: AWJ20_3749
inference: similar to AA sequence:KEGG_Orthology:K17738
note: Peroxisomal 2,4-dienoyl-CoA reductase; auxiliary enzyme of fatty acid beta-oxidation; homodimeric enzyme required for growth and sporulation on petroselineate medium; expression induced during late sporulation and in the presence of oleate; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 9268358]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IDA,ISS] [PMID 9268358]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IEP,IMP] [PMID 7969036]; GO_process: GO:0009062 - fatty acid catabolic process [Evidence IDA,ISS] [PMID 9268358]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]
codon start: 1
product: Sps19p
translation: MTAPVLFKNMFSLAGKTAVITGGSGGLGLSVSKYLLQAGASLALIDNNLPKLEPAAADLSKWYNEPVNKVEYEHKQIISSWACDISDATQVESTIQAIRAHHAKPLDILINAAGYCENISAVEYPALNIKRIVDVNLNGSLFMAREFAKSLIADNHPGSIILVASMSGSIINYPQPQTPYNMTKAGVIHLAKSLASEWAAHNIRVNSLSPGYILTPLTKAIIDSDARLKAEWESKVPLGRMADPSEFAGPIIYMSSAASSYMTGHDLVVDGGYTFW
SIO_010081: AWJ20_3749
subclass of: SO_0000673
so part of: AWJ20_3749
location: complement(137503..138333)
location: region:137503-138333:-1
so has part: feature:137503-138333:-1:exon

XP_018733432.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:137503-138333:-1:exon

AWJ20_3750
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3750
so part of: sequence
location: complement(<143207..>144166)
location: region:143207-144166:-1
so has part: feature:143207-144166:-1:exon
subclass of: SO_0000010

30035806
type: Gene
SIO_000068: ncbigene

position:143207:-1
position: 143207
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:144166:-1
position: 144166
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:143207-144166:-1:exon

AWJ20_3750
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3750
product: hypothetical protein
transcript id: XM_018880777.1
SIO_010081: AWJ20_3750
subclass of: SO_0000673
so part of: AWJ20_3750
location: complement(<143207..>144166)
location: region:143207-144166:-1
so has part: feature:143207-144166:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:143207-144166:-1:exon

AWJ20_3750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3750
codon start: 1
product: hypothetical protein
translation: MPTVVLPNHTLLSFSDTGRPHTGQYETVVLCHGVGSNIRVFESLNEVVRSGQVKIRLLAYNQRGYSGSSPLPKGNLKKEEYALEHATDLVEFLEYANEDLKLPKPPIVVGWSKGTNLLIAIACQSFLPTELRQRGLKYSSAFVLYEPPSSIFALKPDPAFTKAMTPPEGMSKEEQARTLPQRFEKSFGVYYEYPDPNSIEGAKPATNVSEPAAVRELILSAKEPHMIPHGFTWAIGSAKYQRQAVQEALTAKLDIPVLVVWNGMTAPYCKQAALEAHKMGGRVVQLWNGGNHYAFVGEPRRWLTSILTAVHDSSSSSKL
SIO_010081: AWJ20_3750
subclass of: SO_0000673
so part of: AWJ20_3750
location: complement(143207..144166)
location: region:143207-144166:-1
so has part: feature:143207-144166:-1:exon

XP_018733433.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:143207-144166:-1:exon

AWJ20_3751
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PRE5
locus tag: AWJ20_3751
so part of: sequence
location: complement(<144714..>145349)
location: region:144714-145349:-1
so has part: feature:144714-145349:-1:exon
subclass of: SO_0000010

30035807
type: Gene
SIO_000068: ncbigene

position:144714:-1
position: 144714
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:145349:-1
position: 145349
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:144714-145349:-1:exon

AWJ20_3751
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PRE5
locus tag: AWJ20_3751
product: proteasome core particle subunit alpha 6
transcript id: XM_018880778.1
SIO_010081: AWJ20_3751
subclass of: SO_0000673
so part of: AWJ20_3751
location: complement(<144714..>145349)
location: region:144714-145349:-1
so has part: feature:144714-145349:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:144714-145349:-1:exon

AWJ20_3751
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PRE5
locus tag: AWJ20_3751
inference: similar to AA sequence:KEGG_Orthology:K02725
note: Alpha 6 subunit of the 20S proteasome; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 9087403]; GO_component: GO:0042175 - nuclear outer membrane-endoplasmic reticulum membrane network [Evidence IC] [PMID 9087403]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 9087403]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005839 - proteasome core complex [Evidence IEA]; GO_component: GO:0019773 - proteasome core complex, alpha-subunit complex [Evidence IEA]; GO_component: GO:0019773 - proteasome core complex, alpha-subunit complex [Evidence IDA] [PMID 9087403]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0004175 - endopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004298 - threonine-type endopeptidase activity [Evidence IEA,IEA]; GO_process: GO:0010499 - proteasomal ubiquitin-independent protein catabolic process [Evidence IDA] [PMID 19162040]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 11545745]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 19029916]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]
codon start: 1
product: proteasome core particle subunit alpha 6
translation: MTAKLVYNRPLAVSRAVYAIADKAQSNTQQYGRRPYGVGLLIAGFDETGPHLYEFLPSGSVLEYVGTAIGARSQAARTYLERNYEKFGDSSLEELVVHGLNALRDTLAQDKELTSKNTSIAVVGLDTPFKLLDDDEVVPWLEKLDSVSRSSHPVQTEEQPATETQPEPAAATTSTDAPADADAPADAAGAAGSDSAAEPRPDDDSNMDTTQ
SIO_010081: AWJ20_3751
subclass of: SO_0000673
so part of: AWJ20_3751
location: complement(144714..145349)
location: region:144714-145349:-1
so has part: feature:144714-145349:-1:exon

XP_018733434.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:144714-145349:-1:exon

AWJ20_3752
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ERV29
locus tag: AWJ20_3752
so part of: sequence
location: complement(<147370..>148341)
location: region:147370-148341:-1
so has part: feature:147370-148341:-1:exon
subclass of: SO_0000010

30035808
type: Gene
SIO_000068: ncbigene

position:147370:-1
position: 147370
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:148341:-1
position: 148341
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:147370-148341:-1:exon

AWJ20_3752
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ERV29
locus tag: AWJ20_3752
product: Erv29p
transcript id: XM_018880779.1
SIO_010081: AWJ20_3752
subclass of: SO_0000673
so part of: AWJ20_3752
location: complement(<147370..>148341)
location: region:147370-148341:-1
so has part: feature:147370-148341:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:147370-148341:-1:exon

AWJ20_3752
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ERV29
locus tag: AWJ20_3752
note: Protein localized to COPII-coated vesicles; involved in vesicle formation and incorporation of specific secretory cargo; protein abundance increases in response to DNA replication stress; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 11157978]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IPI] [PMID 11157978]
codon start: 1
product: Erv29p
translation: MSNRYQMPLDGGDVKTRRQASGGISGYDSAPMGGANFSSYPGAAASSPSFARRAHEVSEKIDNFLGTVGTPVKPYLPGIGRFLIIATFVEDAFRIVTQWSDQVGYIWNVRGLPHIIAVLFLSINVVAMLIGSFSVVFKKRLEIGVGALLFVVVSQALVYGLIFKFSFFFRNVSLVGGLLIVLSDAFVRDRRSLSLPGLPVLEDKDRSKYLQLAGRILLIFLFIAYMVTRNWTVIGGFFNVIGLVACIMVVVGFKARLSASLLVVLLSVQNLLTNPYWRYASRNPARDLLRYEYFQTLSIVGGLILLVSSGAGRISIDEKKKIY
SIO_010081: AWJ20_3752
subclass of: SO_0000673
so part of: AWJ20_3752
location: complement(147370..148341)
location: region:147370-148341:-1
so has part: feature:147370-148341:-1:exon

XP_018733435.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:147370-148341:-1:exon

AWJ20_3753
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3753
so part of: sequence
location: <149580..>152039
location: region:149580-152039:1
so has part: feature:149580-152039:1:exon
subclass of: SO_0000010

30035809
type: Gene
SIO_000068: ncbigene

position:149580:1
position: 149580
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:152039:1
position: 152039
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:149580-152039:1:exon

AWJ20_3753
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3753
product: hypothetical protein
transcript id: XM_018880780.1
SIO_010081: AWJ20_3753
subclass of: SO_0000673
so part of: AWJ20_3753
location: <149580..>152039
location: region:149580-152039:1
so has part: feature:149580-152039:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:149580-152039:1:exon

AWJ20_3753
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3753
inference: similar to AA sequence:KEGG_Orthology:K15631
codon start: 1
product: hypothetical protein
translation: MPEAAEVLDGYGYDGKIDEIRKLYYGQLDKNGNDSTVYLDHAGTTLYPTSIVDKFSATLVKNIYGNPHSKSPSSQNTERWIERARGQFLGLFGADVRQYSVVFTANSTAAVKLIGEGLSTLPNSKYTYLKDSHTSLVGLRNLASSFEVTGDIEQYLLSLERQLEKENSTHSNSDLEVDDFNGNGHKSTSGNSELLSWPAQSNFSGKRYPCEEWLNRVRFINRNNSSSDHRLYTLLDAAAISSSKPIDLLKLNPDFVIISCYKIFGFPDLGALIVKNEVLPQFFANRKYFGGGTLDSLASETDFVARKSLTGSQALEDGTLPFHSIIGLSIAIDEYKRIYGSFDNISLHTSSLAGYLHRQLERLKYSNGQPLVHIYGPNTEEYKIGEHQGPIVAFNLKFPSGEWIGYSDLETIASSQNINLRTGTLCNSGSASTWMNISDSEIISNYSSGHVCGDTNDIMNGKPTGAVRVSLGACSSIGDVDALINCLTDFYLKPFNQELAKAPLTSAKSLTTTARITALSIYPIKSCAAYNISTPWVVGANGLKWDREFCLVNMSSYSVLSLKKYPKMVHILPKIDGDRLLIRYNDNEISVPLRLLPSNSNSETTLKVCGNNIFAQIYTDATVVKFFTSALGIDCTLARIHNDPQPATNTEITREQPGTMVNSSPILLISQSSVNKLSSNTLNSSSSDDDQRSRHQPVDRQIFRANITISGPTPYSEDEWTAIQTDTVNFKVCIKSGIPTPDSSEARGATGSGAEPQPPEATTTRPILTGQLLGKCQRCNMVCVDASTGQRNQAPFKALHRTRKENVSYSRKKGRKRHC
SIO_010081: AWJ20_3753
subclass of: SO_0000673
so part of: AWJ20_3753
location: 149580..152039
location: region:149580-152039:1
so has part: feature:149580-152039:1:exon

XP_018733436.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:149580-152039:1:exon

AWJ20_3754
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: UBI4
locus tag: AWJ20_3754
so part of: sequence
location: <153893..>154890
location: region:153893-154890:1
so has part: feature:153893-154890:1:exon
subclass of: SO_0000010

30035810
type: Gene
SIO_000068: ncbigene

position:153893:1
position: 153893
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:154890:1
position: 154890
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:153893-154890:1:exon

AWJ20_3754
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: UBI4
locus tag: AWJ20_3754
product: ubiquitin
transcript id: XM_018880781.1
SIO_010081: AWJ20_3754
subclass of: SO_0000673
so part of: AWJ20_3754
location: join(<153893..154414,154870..>154890)
location: region:153893-154890:1
so has part: feature:153893-154414:1:exon
so has part: feature:154870-154890:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:153893-154414:1:exon

position:154414:1
position: 154414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:154870-154890:1:exon

position:154870:1
position: 154870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

AWJ20_3754
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: UBI4
locus tag: AWJ20_3754
inference: similar to AA sequence:KEGG_Orthology:K08770
note: Ubiquitin; becomes conjugated to proteins, marking them for selective degradation via the ubiquitin-26S proteasome system; essential for the cellular stress response; encoded as a polyubiquitin precursor comprised of 5 head-to-tail repeats; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 8982460]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0043008 - ATP-dependent protein binding [Evidence TAS] [PMID 8982460]; GO_function: GO:0031386 - protein tag [Evidence ISS] [PMID 3038523]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence TAS] [PMID 8982460]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0016579 - protein deubiquitination [Evidence TAS] [PMID 8982460]; GO_process: GO:0006513 - protein monoubiquitination [Evidence TAS] [PMID 8982460]; GO_process: GO:0000209 - protein polyubiquitination [Evidence TAS] [PMID 8982460]; GO_process: GO:0016567 - protein ubiquitination [Evidence IMP] [PMID 8035826]
codon start: 1
product: ubiquitin
translation: MQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTYRQRQD
SIO_010081: AWJ20_3754
subclass of: SO_0000673
so part of: AWJ20_3754
location: join(153893..154414,154870..154890)
location: region:153893-154890:1
so has part: feature:153893-154414:1:exon
so has part: feature:154870-154890:1:exon

XP_018733437.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:153893-154414:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:154870-154890:1:exon

AWJ20_3755
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: INO1
locus tag: AWJ20_3755
so part of: sequence
location: <159786..>161393
location: region:159786-161393:1
so has part: feature:159786-161393:1:exon
subclass of: SO_0000010

30035811
type: Gene
SIO_000068: ncbigene

position:159786:1
position: 159786
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:161393:1
position: 161393
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:159786-161393:1:exon

AWJ20_3755
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: INO1
locus tag: AWJ20_3755
product: inositol-3-phosphate synthase INO1
transcript id: XM_018880782.1
SIO_010081: AWJ20_3755
subclass of: SO_0000673
so part of: AWJ20_3755
location: <159786..>161393
location: region:159786-161393:1
so has part: feature:159786-161393:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:159786-161393:1:exon

AWJ20_3755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: INO1
locus tag: AWJ20_3755
inference: similar to AA sequence:KEGG_Orthology:K01858
note: Inositol-3-phosphate synthase; involved in synthesis of inositol phosphates and inositol-containing phospholipids; transcription is coregulated with other phospholipid biosynthetic genes by Ino2p and Ino4p, which bind the UASINO DNA element; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004512 - inositol-3-phosphate synthase activity [Evidence IEA,IEA]; GO_function: GO:0004512 - inositol-3-phosphate synthase activity [Evidence IMP] [PMID 7016881]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_process: GO:0006021 - inositol biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006021 - inositol biosynthetic process [Evidence IMP] [PMID 7016881]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA,IEA]
codon start: 1
product: inositol-3-phosphate synthase INO1
translation: MAPSVNTHSAATAASQAPGYGKSGFTTVEVQTDKVRVADDAIYSTYAYENAVVEKVDGKYKVKPTVQEYEFKLDTKVPKTGLLLVGLGGNNGSTLTAAVTANRHNISFNTKNGKIEPNYFGSVTQAATIKLGIDANGKDVYAPFNEIVPLLHPNDFVIGGWDISKLNLAGAMQRAQVLDYDLQRQLVKHLEQIVPLPSIYYPDFIAANQSERADNLIPGEDKWAHVEHIRKDIREFKEKNDLDKVIVLWTANTERYADIIEGVNDTADNLLKAVKESHSEVSPSTIFAIASILEGVPYINGSPQNTFVPGCIELAEKHNAFIGGDDFKSGQTKLKSVLAQYLVDAGIRPVSVASYNHLGNNDGYNLSAPKQFRSKEISKASVIDDMIESNQILYNDKYGKTVDHCIVIKYVPAVGDSKVAMDEYHSELMLGGHNTVSIHNVCEDSLLATPLIIDLVVVSEFLSRVTYKKKNSEEDYHQFHSVLSFLSYWLKAPLTRPGFDPVNGLNKQRAGLENLIRGLVGLAPHNDLKLEERTV
SIO_010081: AWJ20_3755
subclass of: SO_0000673
so part of: AWJ20_3755
location: 159786..161393
location: region:159786-161393:1
so has part: feature:159786-161393:1:exon

XP_018733438.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:159786-161393:1:exon

AWJ20_3756
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3756
so part of: sequence
location: complement(<160002..>160460)
location: region:160002-160460:-1
so has part: feature:160002-160460:-1:exon
subclass of: SO_0000010

30035812
type: Gene
SIO_000068: ncbigene

position:160002:-1
position: 160002
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:160460:-1
position: 160460
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:160002-160460:-1:exon

AWJ20_3756
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3756
product: myo-inositol-1-phosphate synthase
transcript id: XM_018880783.1
SIO_010081: AWJ20_3756
subclass of: SO_0000673
so part of: AWJ20_3756
location: complement(<160002..>160460)
location: region:160002-160460:-1
so has part: feature:160002-160460:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:160002-160460:-1:exon

AWJ20_3756
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3756
codon start: 1
product: myo-inositol-1-phosphate synthase
translation: MGPLVFTRNQVISTLRLVSGDEIWVVDRRQGNNLLQVLDQLTLKVIVKNLSTLHSTSQIELRDIPTANDEVIRVQKRDNLVERSINILSISINTKLDGSSLSNRTEIVGLNLTILGIERDVVTVGSDSSSQGRTVITTKTNEKQTGLGDLGV
SIO_010081: AWJ20_3756
subclass of: SO_0000673
so part of: AWJ20_3756
location: complement(160002..160460)
location: region:160002-160460:-1
so has part: feature:160002-160460:-1:exon

XP_018733439.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:160002-160460:-1:exon

AWJ20_3757
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: KIP2
locus tag: AWJ20_3757
so part of: sequence
location: complement(<162215..>164302)
location: region:162215-164302:-1
so has part: feature:162215-164302:-1:exon
subclass of: SO_0000010

30035813
type: Gene
SIO_000068: ncbigene

position:162215:-1
position: 162215
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:164302:-1
position: 164302
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:162215-164302:-1:exon

AWJ20_3757
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: KIP2
locus tag: AWJ20_3757
product: Kip2p
transcript id: XM_018880784.1
SIO_010081: AWJ20_3757
subclass of: SO_0000673
so part of: AWJ20_3757
location: complement(<162215..>164302)
location: region:162215-164302:-1
so has part: feature:162215-164302:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:162215-164302:-1:exon

AWJ20_3757
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: KIP2
locus tag: AWJ20_3757
note: Kinesin-related motor protein involved in mitotic spindle positioning; stabilizes microtubules by targeting Bik1p to the plus end; Kip2p levels are controlled during the cell cycle; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 9693366]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005871 - kinesin complex [Evidence IEA]; GO_component: GO:0005871 - kinesin complex [Evidence TAS] [PMID 9153752]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008017 - microtubule binding [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence TAS] [PMID 9153752]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0007018 - microtubule-based movement [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0007026 - negative regulation of microtubule depolymerization [Evidence IMP] [PMID 9693366]; GO_process: GO:0030473 - nuclear migration along microtubule [Evidence IMP] [PMID 9693366]
codon start: 1
product: Kip2p
translation: MSMSISSSPNKRPPVRPPSVLSLNGMGMPSPSHSRPQTPRLSRRPASSLSLRSPTPSLRRPATPSQYGPMSGSGSAVSPSMSYTGNIKVSVRVKPNVISQQPESHTAAAVAASSWIVDPANSCISTKEVGDFNFDHVFDGAGLPNSHIYQNSVEPLVEQVMQGFHGTVFAYGMTGSGKTFSMQGTRNDPGIIPLAAESIFNHIDNDPSRSYKVTLGYLEIYNEHLNDLLTPGDKTNPGEETIKLRDDVLRGVRAMGLKEVDVRSSQELLDYIAQGDSIRRTEGTDFNSRSSRSHAVVQISIESIPNSDSTGVRSHQSQHQQLQRLQSTLYLCDLAGSERAVSQSERRKEGAFINKSLLTLGTVIARLSSNNNAGHIPYRDSKLTRLLQPALSGKSLVSVLCTIQTTAYSYIETLSTLRFAARAKNIVVSAKRNDDADPSAKTVERLLQQVAAQKLEIEQLRANGSSGSSSSATSTNGSGLGIGYASSSGSSSGLPSPTLPSMAHMSQLEAENRILHERVEHLSRLCDDSRLEDILGVTADESDLDGDSNKHLQQIEEYKSYIAHLEKQLYNQEINRSINGRETPSESGQSHLSSGSHYNDIIRDLKEEIEELRESNRDKDRIINALRASNKRKENLAASLSSTAANSLAYSRYYGSNTVSPPPIAEDRADTAKENIPSDIVPTSKLSEISLETNR
SIO_010081: AWJ20_3757
subclass of: SO_0000673
so part of: AWJ20_3757
location: complement(162215..164302)
location: region:162215-164302:-1
so has part: feature:162215-164302:-1:exon

XP_018733440.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:162215-164302:-1:exon

AWJ20_3758
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TPM2
locus tag: AWJ20_3758
so part of: sequence
location: <165741..>166356
location: region:165741-166356:1
so has part: feature:165741-166356:1:exon
subclass of: SO_0000010

30035814
type: Gene
SIO_000068: ncbigene

position:165741:1
position: 165741
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:166356:1
position: 166356
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:165741-166356:1:exon

AWJ20_3758
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TPM2
locus tag: AWJ20_3758
product: tropomyosin TPM2
transcript id: XM_018880785.1
SIO_010081: AWJ20_3758
subclass of: SO_0000673
so part of: AWJ20_3758
location: join(<165741..165758,165913..>166356)
location: region:165741-166356:1
so has part: feature:165741-165758:1:exon
so has part: feature:165913-166356:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:165741-165758:1:exon

position:165758:1
position: 165758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:165913-166356:1:exon

position:165913:1
position: 165913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

AWJ20_3758
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TPM2
locus tag: AWJ20_3758
inference: similar to AA sequence:KEGG_Orthology:K17945
note: Minor isoform of tropomyosin; binds to and stabilizes actin cables and filaments, which direct polarized cell growth and the distribution of several organelles; appears to have distinct and also overlapping functions with Tpm1p; TPM2 has a paralog, TPM1, that arose from the whole genome duplication; GO_component: GO:0032432 - actin filament bundle [Evidence IDA] [PMID 9864365]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 9864365]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_function: GO:0003786 - actin lateral binding [Evidence TAS] [PMID 9153752]; GO_process: GO:0051017 - actin filament bundle assembly [Evidence IGI] [PMID 9864365]; GO_process: GO:0007015 - actin filament organization [Evidence TAS] [PMID 10652251]; GO_process: GO:0008154 - actin polymerization or depolymerization [Evidence TAS] [PMID 10652251]; GO_process: GO:0007118 - budding cell apical bud growth [Evidence TAS] [PMID 10652251]; GO_process: GO:0007119 - budding cell isotropic bud growth [Evidence TAS] [PMID 10652251]; GO_process: GO:0030010 - establishment of cell polarity [Evidence TAS] [PMID 10652251]; GO_process: GO:0006887 - exocytosis [Evidence TAS] [PMID 10652251]; GO_process: GO:0008298 - intracellular mRNA localization [Evidence TAS] [PMID 10652251]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence TAS] [PMID 10652251]; GO_process: GO:0000011 - vacuole inheritance [Evidence TAS] [PMID 10652251]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence TAS] [PMID 10652251]
codon start: 1
product: tropomyosin TPM2
translation: MDKLRETEAAQEKADEANDKVKTLEQENLQKDQEIASLTHKNSLLEQEVEELESKLNDAKGAAEEGAAHGTQNESLTKKISLLEEELENSDKNLRETTEKLRQTDVKAEHFERKVTSLEQERDDWEKKFEELSEKYSAAKAELDEITQQLESI
SIO_010081: AWJ20_3758
subclass of: SO_0000673
so part of: AWJ20_3758
location: join(165741..165758,165913..166356)
location: region:165741-166356:1
so has part: feature:165741-165758:1:exon
so has part: feature:165913-166356:1:exon

XP_018733441.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:165741-165758:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:165913-166356:1:exon

AWJ20_3759
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3759
so part of: sequence
location: <166994..>168097
location: region:166994-168097:1
so has part: feature:166994-168097:1:exon
subclass of: SO_0000010

30035815
type: Gene
SIO_000068: ncbigene

position:166994:1
position: 166994
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:168097:1
position: 168097
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:166994-168097:1:exon

AWJ20_3759
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3759
product: hypothetical protein
transcript id: XM_018880786.1
SIO_010081: AWJ20_3759
subclass of: SO_0000673
so part of: AWJ20_3759
location: <166994..>168097
location: region:166994-168097:1
so has part: feature:166994-168097:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:166994-168097:1:exon

AWJ20_3759
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3759
codon start: 1
product: hypothetical protein
translation: MEVCTRSGVYRGVGCNNARTGFGFRRFLSSANWSPCNDGNIATILHVRKLSTLLKKKNRTDSEFTQLTKHSVSRNTLHHSSNIRNGLDQGRRTIDPVGTIRHARTYATYRGPGRGGLISSVWNLVPAPVRAFTVVAGTAAGFFFISVPLLIICGPPLALGLWLYTRRMKRIANELYHQRWNNLGSYHLTFEDQLDQTAKSQNPADDLFTILMNKAGGATSDAERIARDRILDAVESDEQNLAGLLNIKNQRDIDNLGLTGLEGIQQDFRGSSQGFQEKMEIRTLGLVDKAQSPPRRLANVTLVIQSDGYRNKKMRVELEVLAGYLRSSERIILDANPVGDKSSGSQSSSYAQDTIIEVDPSHYRRTK
SIO_010081: AWJ20_3759
subclass of: SO_0000673
so part of: AWJ20_3759
location: 166994..168097
location: region:166994-168097:1
so has part: feature:166994-168097:1:exon

XP_018733442.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:166994-168097:1:exon

AWJ20_3760
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ACC1
locus tag: AWJ20_3760
so part of: sequence
location: <173456..>179983
location: region:173456-179983:1
so has part: feature:173456-179983:1:exon
subclass of: SO_0000010

30035817
type: Gene
SIO_000068: ncbigene

position:173456:1
position: 173456
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:179983:1
position: 179983
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:173456-179983:1:exon

AWJ20_3760
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ACC1
locus tag: AWJ20_3760
product: acetyl-CoA carboxylase ACC1
transcript id: XM_018880788.1
SIO_010081: AWJ20_3760
subclass of: SO_0000673
so part of: AWJ20_3760
location: <173456..>179983
location: region:173456-179983:1
so has part: feature:173456-179983:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:173456-179983:1:exon

AWJ20_3760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ACC1
locus tag: AWJ20_3760
inference: similar to AA sequence:KEGG_Orthology:K11262
note: Acetyl-CoA carboxylase, biotin containing enzyme; catalyzes carboxylation of cytosolic acetyl-CoA to form malonyl-CoA and regulates histone acetylation by regulating the availablity of acetyl-CoA; required for de novo biosynthesis of long-chain fatty acids; ACC1 has a paralog, HFA1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 9438137]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA,IEA]; GO_function: GO:0003989 - acetyl-CoA carboxylase activity [Evidence IMP,ISS] [PMID 8098706]; GO_function: GO:0004075 - biotin carboxylase activity [Evidence IEA,IEA]; GO_function: GO:0004075 - biotin carboxylase activity [Evidence ISS] [PMID 1350093]; GO_function: GO:0004075 - biotin carboxylase activity [Evidence IMP] [PMID 6108218]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0042759 - long-chain fatty acid biosynthetic process [Evidence IMP] [PMID 6103540]; GO_process: GO:2001295 - malonyl-CoA biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO…
codon start: 1
product: acetyl-CoA carboxylase ACC1
translation: MATPEDLEANAEYIRMADQYVEVPGGTNNNNYANVELIVDIAERTNVQAVWAGWGHASENPHLPESLAASPKKIVFIGPPGSAMRSLGDKISSTIVAQHAKVPCIPWSGTGVDQVSVDKESGLVSVPDDVYIKGCCTTPEDGLEKAKKIGFPVMIKASEGGGGKGIRKVEHEDKFISLYKQVEAEIPGSPIFIMQLAGNARHLEVQLLADQYGNNISLFGRDCSVQRRHQKIIEEAPVTIARPDTFTAMEKAAVRLGQLVGYVSAGTVEYLYSHADDKFYFLELNPRLQVEHPTTEMVTGVNLPAAQLQIAMGIPLHNIRDIRLFYGVDPKTQTPIDFDFSTELSKKSQRRPVPKGHTTACRITSEDPGEGFKPSSGMMHELNFRSSSNVWGYFSVGNQGGIHSFSDSQFGHIFAFGENRQASRQHMVVALKELSIRGDFRTTVEYLIKLLETPDFEDNTITTGWLDELISKKLTAERPDPYLAVICGAVTKAHVQCEGIINDYKTSLEKGQAPSKETLKSLFAIDFIYEGERYKFTATRSSQDSYTLFINGSRVDVGVRSLSDGGLLVSIGGKSHSVYWKEEVGATRVSVDAKTCLLEVENDPTQLRTPSPGKLVRFLVESGERVKAGQPYAEVEVMKMYMPLVAAEDGIVQLIKQPGSTLEAGDILGILALDDPSRVKHAKPFEGQLPEYGPSSLIGNKPSQRFYVLHHILENILSGFDNQVVMNSTLKELIEVLRNPELPYGEWSQQASALHSRLPAKLDANLSGIVDKAKQRKAEFPAKQLLKAIEKAAPEKASEAGIYQSVVEPLTKICVRYSEGLVAHEYHVIANLLQEYIDVESLFSGSHSREEDVILRLREENKDNLRKVVMKVWSHSRVGAKNNLILAILSEYQPSKVDSSLIAAHIRPVLKNLVELESRATAKVVLKAREILIQCALPSLKERSDQLEHILRSSVVESSYGEVGLERRTPSYEVLREVVDSRYTVFDVLIQFFTHPDPYIVLAALELYVRRASRAYVIPELTYHMDSSSPAVCYKFRLPNLNNAAYNALASASAGSSNVSSPDGASSPVRTHFSRAISISDLSFLIGKNDTSPLRTGVVAPAASLDDIDEALSRALELFPRSNGGLEIKVNGGSLAQQRGVPSAAGSNNGSNGQKNPLTNICSVVVSDSDPDASDDDILDRIADVLEDNKDDLVACSVRRLTFLIGGDVGVYPKYFTFRGPDYQEDKTIRHIEPALAFQLELGRLSNFEIKPVFTDNRNIHIYEAVAKNSSSDKRFFTRGIVTPGRIRDDISTPSYLISEANRLMTDILDALEIVETSNTDLNHIFINFTAVFTLDPKQVEDAFGGFLERFGRRLWRLRVTGAEIRIMISDPTSGATFPLRAMINNVSGYVVKTDMYAEVKNNKGDWVYKSLGATPGSMHSRPVNTPYPTKEWLQPKRYKAHLMGTTYCYDFPELFRQAIISQWKKVPNAKVPEDVFSYSELIIDETEQLSEITREPGANNVGMVAWKCFAKTVEYPAGRKFVVIANDITYKIGSFGPQEDNFFNKVTELARAEGIPRIYLSANSGARIGVAEEIIPLFSVAWNDAENPSKGFRYLYLTPEHYEQLNKSAKKTVSCEHIVEDGEVRYKIEFIIGAEDGLGVECLKGSGLIAGATSRAYKDIFTITLVTCRSVGIGAYLVRLGQRAIQIEGQPIILTGAPAINKLLGREVYSSNLQLGGTQIMYRNGVSHLTANDDLAGVEKIVNWMSYVPAQRNLPVPILSLGDNWDRDVEFVPSKSEPYDVRWLIAGRENGDHFEAGLFDKGSFQETLSGWAKGVVVGRARLGGIPMGVIGVETRAVENMIPADPANPDSTEVMVQEAGQVWYPNSAFKTAQAINDFNHGEQLPLMILANWRGFSGGQRDMYNEVLKYGSYIVDALVDFKQPIMTYIPPTGELRGGSWVVVDPTINSDMMEMYADAEARAGVLEPEGMVGIKFRRDKLLSTMKRLDPKYAELCREAERK…
SIO_010081: AWJ20_3760
subclass of: SO_0000673
so part of: AWJ20_3760
location: 173456..179983
location: region:173456-179983:1
so has part: feature:173456-179983:1:exon

XP_018733443.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:173456-179983:1:exon

AWJ20_3761
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3761
so part of: sequence
location: complement(<177241..>177642)
location: region:177241-177642:-1
so has part: feature:177241-177642:-1:exon
subclass of: SO_0000010

30035818
type: Gene
SIO_000068: ncbigene

position:177241:-1
position: 177241
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:177642:-1
position: 177642
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:177241-177642:-1:exon

AWJ20_3761
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3761
product: hypothetical protein
transcript id: XM_018880789.1
SIO_010081: AWJ20_3761
subclass of: SO_0000673
so part of: AWJ20_3761
location: complement(<177241..>177642)
location: region:177241-177642:-1
so has part: feature:177241-177642:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:177241-177642:-1:exon

AWJ20_3761
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3761
codon start: 1
product: hypothetical protein
translation: MSVLTTYPDTLLIMARRGKVAPEVGSEIMIRISAPVTRRRHRRRPNLSKNPPKASSTCLGSKVKTAVKLMKMWLRSVLEVSTISRASRMSVMRRLASEIRYDGVEISSLIRPGVTIPLVKNLLSEDEFLATAS
SIO_010081: AWJ20_3761
subclass of: SO_0000673
so part of: AWJ20_3761
location: complement(177241..177642)
location: region:177241-177642:-1
so has part: feature:177241-177642:-1:exon

XP_018733444.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:177241-177642:-1:exon

AWJ20_3762
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ERT1
locus tag: AWJ20_3762
so part of: sequence
location: complement(<180252..>182000)
location: region:180252-182000:-1
so has part: feature:180252-182000:-1:exon
subclass of: SO_0000010

30035819
type: Gene
SIO_000068: ncbigene

position:180252:-1
position: 180252
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:182000:-1
position: 182000
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:180252-182000:-1:exon

AWJ20_3762
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ERT1
locus tag: AWJ20_3762
product: Ert1p
transcript id: XM_018880790.1
SIO_010081: AWJ20_3762
subclass of: SO_0000673
so part of: AWJ20_3762
location: complement(<180252..>182000)
location: region:180252-182000:-1
so has part: feature:180252-182000:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:180252-182000:-1:exon

AWJ20_3762
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ERT1
locus tag: AWJ20_3762
note: Transcriptional regulator of nonfermentable carbon utilization; GFP-fusion protein localizes to cytoplasm, nucleus; null mutation affects periodicity of transcriptional and metabolic oscillation; plays role in restricting Ty1 transposition; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0004871 - signal transducer activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]
codon start: 1
product: Ert1p
translation: MNNTSLQRDTRAVVSLGLGNNGQGPKNDTGLRPQLQSQPLVEDWDTSSSNSMTPILDSSVGMMSSDNSNGNTDRKEVQKNSTHNNSSGGVRKERKEKRPKTSRACIHCQTAHVTCDSGRPCKRCIKKGLESSCRDGNRKRAKYLAGEDPTLIPESNVGIPNIANASLSPLNPLSSSDNRLLPSIPDNLLTGNPGNMGPMAGVTGQLGNGLTGTIPLSANGQNNGSPPIGPVGSSQNQNSFTPIPQSLEDPFLHNDMSQYSFGSRATNLEYSILSNILRTNIESQHPQLGNQGNQTTTSTPESDISLQGTYFPELKISDFEALDSGSNPLLLPGSQQQQQQQPHQRQSLQKQQQKPQQTQQQELPLPQQKTELNQSNSVLQTQLSNDVIPHRFNSPEEVYQYVRSPFPYTQGFHELIAYLRSRFDKRHLMHMARAMAAYRPSFIATTKLLKEQDLIFMEQCFQRTLMEFEKIIASSGTPTIIWRRTGQIAAVGKEFCILTGWSPERLVSNTTFIVELMDDKSVTDYFDVFSRLAFGDSRGVSMTECTLLKPNGEKVPTACTWTVKRDVFDIPMMIIGNFLPIL
SIO_010081: AWJ20_3762
subclass of: SO_0000673
so part of: AWJ20_3762
location: complement(180252..182000)
location: region:180252-182000:-1
so has part: feature:180252-182000:-1:exon

XP_018733445.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:180252-182000:-1:exon

AWJ20_3763
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: AAP1
locus tag: AWJ20_3763
so part of: sequence
location: <185275..>187482
location: region:185275-187482:1
so has part: feature:185275-187482:1:exon
subclass of: SO_0000010

30035820
type: Gene
SIO_000068: ncbigene

position:185275:1
position: 185275
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:187482:1
position: 187482
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:185275-187482:1:exon

AWJ20_3763
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: AAP1
locus tag: AWJ20_3763
product: Aap1p
transcript id: XM_018880791.1
SIO_010081: AWJ20_3763
subclass of: SO_0000673
so part of: AWJ20_3763
location: <185275..>187482
location: region:185275-187482:1
so has part: feature:185275-187482:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:185275-187482:1:exon

AWJ20_3763
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: AAP1
locus tag: AWJ20_3763
inference: similar to AA sequence:KEGG_Orthology:K13721
note: Arginine/alanine amino peptidase; overproduction stimulates glycogen accumulation; AAP1 has a paralog, APE2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA]; GO_function: GO:0004177 - aminopeptidase activity [Evidence ISS] [PMID 8100228]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0005977 - glycogen metabolic process [Evidence IMP] [PMID 8100228]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0006508 - proteolysis [Evidence IMP] [PMID 8100228]
codon start: 1
product: Aap1p
translation: MEATDCRRAFPSFDEPALKATFDITLVADKELTALSNMDVKEEKILESGKKATSFNTSPVMSTYLVAFIVGELSYVESNYFRVPVRVYATPGMEDRCKFSAELGARTLEFFEKKFDVPYPLPKMDMVGIHDFSAGAMENWGLVTYRVVDLLFDEENDNANTKQRVAEVVQHELAHQWFGNLVTMDWWDGLWLNEGFATWMSWYSCNSFYPDWKVWETYVGDNLQSCLALDSLRSSHPVEVPVKRADEVNQIFDAISYSKGSCIVKMVSIILGEDTFIRGISRYLKRHQYGNTETGDLWKALSEESGLDVAGIMDTWTSKVGFPVLTVSEDGNTIHVRQNRFLATGDVKPEEDTTIYPLSLALRNKSGKVENINLDKREISIDLSKYDASSAFYKLNADQAGLYRTLYPPERVVKLSQAGADNLLSVEDRVGLIADTASLSVSGYQKTSALLDLISLWKNEKEPNVWMEMLKRFGAIRKTWIFQPESTTDALKQLLGELVLPKVNELGWNFHAEESLLQQQLKGTLFSSAVSSENDKIVKEALSLFEKYASGDAKAVHPNIRAAVFGAAAKYGDEATWQRLVDVYTSPKSSVEGLAAITALGGAKNVDLQKKTIKLTLDGTVRSQDVFYVLNGLSTNVAGIQILWDWLREEWDAITKKFPANMGLLLNIIYICTGSLATPQHLKEFDEFFKSKDTKGFDKAVSISRDRLVSRIAWLERDVKDVEEWLAKHQSSTKL
SIO_010081: AWJ20_3763
subclass of: SO_0000673
so part of: AWJ20_3763
location: 185275..187482
location: region:185275-187482:1
so has part: feature:185275-187482:1:exon

XP_018733446.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:185275-187482:1:exon

AWJ20_3764
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3764
so part of: sequence
location: <194525..>195049
location: region:194525-195049:1
so has part: feature:194525-195049:1:exon
subclass of: SO_0000010

30035821
type: Gene
SIO_000068: ncbigene

position:194525:1
position: 194525
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:195049:1
position: 195049
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:194525-195049:1:exon

AWJ20_3764
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3764
product: hypothetical protein
transcript id: XM_018880792.1
SIO_010081: AWJ20_3764
subclass of: SO_0000673
so part of: AWJ20_3764
location: <194525..>195049
location: region:194525-195049:1
so has part: feature:194525-195049:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:194525-195049:1:exon

AWJ20_3764
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3764
codon start: 1
product: hypothetical protein
translation: MSHSGWADSVIPTESVANTDSPWAEIESENKSENKSEDAPGREVVSSATGPSGRSNTPVIRINSSSSTSSSQPDNALTVEGDDDIEVTDAIEGQNEHPFSLSPDLNRSPGQIGVVSSCESSPDAVHTSGDDAHILQKENDDLRTATSESDNIIMELNMDTTVRYLSECWDDIVG
SIO_010081: AWJ20_3764
subclass of: SO_0000673
so part of: AWJ20_3764
location: 194525..195049
location: region:194525-195049:1
so has part: feature:194525-195049:1:exon

XP_018733447.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:194525-195049:1:exon

AWJ20_3765
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RIM15
locus tag: AWJ20_3765
so part of: sequence
location: <195959..>201064
location: region:195959-201064:1
so has part: feature:195959-201064:1:exon
subclass of: SO_0000010

30035822
type: Gene
SIO_000068: ncbigene

position:195959:1
position: 195959
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:201064:1
position: 201064
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:195959-201064:1:exon

AWJ20_3765
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RIM15
locus tag: AWJ20_3765
product: protein kinase RIM15
transcript id: XM_018880793.1
SIO_010081: AWJ20_3765
subclass of: SO_0000673
so part of: AWJ20_3765
location: <195959..>201064
location: region:195959-201064:1
so has part: feature:195959-201064:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:195959-201064:1:exon

AWJ20_3765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RIM15
locus tag: AWJ20_3765
inference: similar to AA sequence:KEGG_Orthology:K12767
codon start: 1
product: protein kinase RIM15
translation: MEDSDAVPAPPLVLCRICERHYTTWWFERHSELCMIEHRAASELEETHEAVLEHRLVITGLLGALELRMNFHVFDSPLTPSGSTSSYGSVTGRSGSSSGSGSGSIGLGPSAGGGSGSGGVPSLEYRGYTLQLPLFPSDLVSNITSSGPGVTNNAVNIPNTGGSVGSIGSLPSSLGSPGPVTVGSAGSIPINGSPPRSPRLASSPLSSGSNRRALQRPGAIPISASSVPHPFMGKRSPIRIMELLLDLCDAAMQIKNPEIIIDEHNEEGEIRVHAHRSEIKIYEVLNWMPPSSIEDPGLALLCDDTMKFAREKAAAALRMGNTLLYSEKIRRETELQVQQVIQDIGEKVATERDYDDSMLVDYNSDSRNSQVFFDSDRSSSGRGFRENRLGGVGRKGSNGGASTGSNAGSGIFSNAYLQADVLPNSGNATPPRVPRESNISPYQLPAQPTPTSMLQMQRLNLEDSDSGEHRELSPSPSSFSPSAPAAAPAQPPAPAPSQIPLATPSAASSPLSQIAHLATAAPASPAAFTTAPAVQGQPSHIASPSMAAPRPIAPLSGNTLTPKLLLNINTSMEHEAISPTRRLSTSDGGYAGYGSAFGSGITPTNVANISSPGGVLLRDRFVTRSRGSGGSSIGSHGSMDINSEDLPTNIGELDLNSPVHSGGTSSGSSSNTASAGPMKLSARKSMTNMSSARSFGSPITNLQRTRTSGGPAPGPIPAVASTVLASNSPSTPGTSPLLFPRDFDRHHHRQSSAASDFTRAPVSPLLTSTVPPMKVSQPSIRDYEIISPISKGAFGSVYLSKKKVTGEYFAIKVLKKADMIAKNQVMNVKNERAIMMSQADSPYVAKLFATFQSKEYLFLVMEYLNGGDCAALVKALNGVPADWCQQYIAEIVVITENLHQRGIVHRDLKPDNLLIDNRGHLKLSDFGLSRMGAVGRHTRMKDGQTSAPRGGSGSMGTGTATASATTSTGGTVIAAGSGTSTGSGNGGTSTPSGLESPADINALLARSSVFGSINNNATNAFGITPGITGAHENISLVPGYFNYARSASSSYFYDHKSNVRTDSSDSERARDHNSPTPDPSGKNSTNSSMAVDETSTTTNVSQVVKSSSRTSSSSGSTPRVVLYDPDDTSSRRFVGTPDYLAPETIQGNGQDEMSDWWSVGCIIFEFWYGYPPFHADSPEKVFRNILARNIQWPSELLEDKPGTDLANDLISKLLAVDQKQRLGANGVDEIRQHPFFSKDLDWDHLYDDDQAVFVPAVDNPESTDYFDSRGAVMTEFPDDSAVAGDDDNSMAIESDSSDNNSSKQTGTSPLSTKKEPRMKMLPLHIPPHVHDSTRIRRLSEPSLADDFGSFSFKNLPVLEKANKEVISKIKSETESGRQRGLSVSAKGSPTSSKVITPAWCSPGQPSSSSPGTFPNTSTSGTHGSSMSSSISNIATHTGSVASSTSDDIFADSESPSRRLQQDLHLSISSIGSKGGDLDSESGSPRHKRHSSSYRRLSNMESSPELGEQYRKQSLASASRNYQVFDMSPSSSDNEDSRGAALLRVQKRRQLSRRMSSFALNVEPSPRALDILVCDGNPVWRYTTEKMLVSLGCRVVTVATGEEAIRRSVGDVIFDIIFVEYKIGKWSGVDITRLIHSTLNPNKSTPVVVMTNLIKEAEETVKQAQEENKTVFSAVIEKPPSEQKLVTALQKVVNWRPKERKK
SIO_010081: AWJ20_3765
subclass of: SO_0000673
so part of: AWJ20_3765
location: 195959..201064
location: region:195959-201064:1
so has part: feature:195959-201064:1:exon

XP_018733448.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:195959-201064:1:exon

AWJ20_3766
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SIS2
locus tag: AWJ20_3766
so part of: sequence
location: complement(<201367..>203100)
location: region:201367-203100:-1
so has part: feature:201367-203100:-1:exon
subclass of: SO_0000010

30035823
type: Gene
SIO_000068: ncbigene

position:201367:-1
position: 201367
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:203100:-1
position: 203100
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:201367-203100:-1:exon

AWJ20_3766
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SIS2
locus tag: AWJ20_3766
product: phosphopantothenoylcysteine decarboxylase complex subunit SIS2
transcript id: XM_018880794.1
SIO_010081: AWJ20_3766
subclass of: SO_0000673
so part of: AWJ20_3766
location: complement(<201367..>203100)
location: region:201367-203100:-1
so has part: feature:201367-203100:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:201367-203100:-1:exon

AWJ20_3766
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SIS2
locus tag: AWJ20_3766
note: Negative regulatory subunit of protein phosphatase 1 (Ppz1p); involved in coenzyme A biosynthesis; subunit of phosphopantothenoylcysteine decarboxylase (PPCDC: Cab3p, Sis2p, Vhs3p) complex and the CoA-Synthesizing Protein Complex (CoA-SPC: Cab2p, Cab3p, Cab4p, Cab5p, Sis2p and Vhs3p); SIS2 has a paralog, VHS3, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IC,IPI] [PMID 9636153]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 7705654]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 9636153]; GO_component: GO:0071513 - phosphopantothenoylcysteine decarboxylase complex [Evidence IDA] [PMID 19915539]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004633 - phosphopantothenoylcysteine decarboxylase activity [Evidence ISS] [PMID 10592175]; GO_function: GO:0004633 - phosphopantothenoylcysteine decarboxylase activity [Evidence IDA,IMP] [PMID 19915539]; GO_function: GO:0004864 - protein phosphatase inhibitor activity [Evidence IEA]; GO_function: GO:0004864 - protein phosphatase inhibitor activity [Evidence IDA] [PMID 9636153]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence IEA]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence ISS] [PMID 10592175]; GO_process: GO:0043086 - negative regulation of catalytic activity [Evidence IEA]; GO_process: GO:0007346 - regulation of mitotic cell cycle [Evidence IGI] [PMID 10022927]; GO_process: GO:0009651 - response to salt stress [Evidence IGI,IMP] [PMID 9636153]
codon start: 1
product: phosphopantothenoylcysteine decarboxylase complex subunit SIS2
translation: MSEVGSDQNTLAQQDQFRHQQQQQQQPQQQQDQQKEQQVPSLKTDSIGETGLIGASGVATTNTGIRPPASTQSSADGTAKAKKEKPNFKLDIMPPSYFQQQSQNASQQAPAESILVKDTSRLSIDSGRAKGATLLPPPNNSTSHNKQPSMHAHFLVNDVVGHQGNSRSRSASGSDRGSDSDFARSAVIESIIKGENKGLNISGGPAGSSNTSLNASRSGSVSGAASGGPSNATSGTSSTHNNGSVAIGGVVSGGNNNGLNLDSTLKSRQGSTVDAIGPDSVVGTLDGIPASTAAGAAQTTASATSNSDPRLPQDDGRIHILIGATGSVSTGKLRQIIHKLEEIYTKPKVSIQVILTKAAEKFVSRGEIPSNIRIWRDSDEWANWRGRSDAVVHIELRRWADILVVAPLSANTLGKIAIGLCDNLLTNVIRAWDTQYPILIAPAMSSYAYNHPATKRHIKTIKEEMKWIETLKPVEKVVGSYGGIGMGGMMDWNEIVDKTIMKLGGYPENDLEDEDDESIDRTKDDDDDDDDDDDDEDDDEDDDDDNDGQTKRDDRARDVDSDDDTDSRRRRNSVSSF
SIO_010081: AWJ20_3766
subclass of: SO_0000673
so part of: AWJ20_3766
location: complement(201367..203100)
location: region:201367-203100:-1
so has part: feature:201367-203100:-1:exon

XP_018733449.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:201367-203100:-1:exon

AWJ20_3767
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PHO80
locus tag: AWJ20_3767
so part of: sequence
location: <206522..>208168
location: region:206522-208168:1
so has part: feature:206522-208168:1:exon
subclass of: SO_0000010

30035824
type: Gene
SIO_000068: ncbigene

position:206522:1
position: 206522
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:208168:1
position: 208168
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:206522-208168:1:exon

AWJ20_3767
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PHO80
locus tag: AWJ20_3767
product: Pho80p
transcript id: XM_018880795.1
SIO_010081: AWJ20_3767
subclass of: SO_0000673
so part of: AWJ20_3767
location: <206522..>208168
location: region:206522-208168:1
so has part: feature:206522-208168:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:206522-208168:1:exon

AWJ20_3767
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PHO80
locus tag: AWJ20_3767
inference: similar to AA sequence:KEGG_Orthology:K06654
note: Cyclin; interacts with cyclin-dependent kinase Pho85p; regulates the response to nutrient levels and environmental conditions, including the response to phosphate limitation and stress-dependent calcium signaling; GO_component: GO:0000307 - cyclin-dependent protein kinase holoenzyme complex [Evidence IPI] [PMID 8108735]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9853758]; GO_function: GO:0016538 - cyclin-dependent protein serine/threonine kinase regulator activity [Evidence IDA] [PMID 8108735]; GO_function: GO:0019901 - protein kinase binding [Evidence IEA]; GO_process: GO:0006875 - cellular metal ion homeostasis [Evidence IMP] [PMID 20429018]; GO_process: GO:0050849 - negative regulation of calcium-mediated signaling [Evidence IGI] [PMID 16455487]; GO_process: GO:0016242 - negative regulation of macroautophagy [Evidence IMP] [PMID 20417603]; GO_process: GO:0045936 - negative regulation of phosphate metabolic process [Evidence IGI] [PMID 3915785]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 3915785]; GO_process: GO:0000079 - regulation of cyclin-dependent protein serine/threonine kinase activity [Evidence IEA]; GO_process: GO:0000079 - regulation of cyclin-dependent protein serine/threonine kinase activity [Evidence IDA] [PMID 8108735]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 16455487]
codon start: 1
product: Pho80p
translation: MSGPGNSDSVNGALAAISVPATAPVTASGSEEHIQQKGHVPETASTSAGLGGATDSTAPRTGAHDLSQNGKGVSAEAVNGASVVNQQQQLLQQECQRQEQQQEEQQIQQIQQQQQQQQQQQQQQLQQQQHQQQQTSSQTTHVATPSTPLSPRNVKFVSRNFYDCPMNDLVRLVSSMLQELVSLNDALPFKTDQLTRFHSRSAPGISIQDYLIRIIKFCTLEKSIVLSIIYFIDLLCTTYSKFNINSLTVHRFMITAAMVGSKGLCDSFCTNSHYAKVGGVSKVELNLLEVEFLTRVDYRIVPKVELLNQYYESMVARLEGVYAFPAEPSPASALVSSPPHAGLTPPPFDHDVPSAPATFNGGNGSNTTPTHYSFGHLSHISTPNRASSQPPEFTQTPTAQSNPISDSNMTNSAHHHRSVKVTLREAALSLSKLMLPSDIARKEGRKNRSSVLKRRFSSSFSGSNNSAPDPVTTQSNETDLATVVENDMPVAPAVPADITASLMYDPEGYPSPRKKPNIIDSVPSGPTDVFDEADVDLPMTPKRPKPTP
SIO_010081: AWJ20_3767
subclass of: SO_0000673
so part of: AWJ20_3767
location: 206522..208168
location: region:206522-208168:1
so has part: feature:206522-208168:1:exon

XP_018733450.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:206522-208168:1:exon

AWJ20_3768
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ECT1
locus tag: AWJ20_3768
so part of: sequence
location: <209713..>210915
location: region:209713-210915:1
so has part: feature:209713-210915:1:exon
subclass of: SO_0000010

30035825
type: Gene
SIO_000068: ncbigene

position:209713:1
position: 209713
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:210915:1
position: 210915
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:209713-210915:1:exon

AWJ20_3768
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ECT1
locus tag: AWJ20_3768
product: ethanolamine-phosphate cytidylyltransferase
transcript id: XM_018880796.1
SIO_010081: AWJ20_3768
subclass of: SO_0000673
so part of: AWJ20_3768
location: <209713..>210915
location: region:209713-210915:1
so has part: feature:209713-210915:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:209713-210915:1:exon

AWJ20_3768
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ECT1
locus tag: AWJ20_3768
inference: similar to AA sequence:KEGG_Orthology:K00967
note: Ethanolamine-phosphate cytidylyltransferase; catalyzes the second step of phosphatidylethanolamine biosynthesis; involved in the maintenance of plasma membrane; similar to mammalian CTP: phosphocholine cytidylyl-transferases; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004306 - ethanolamine-phosphate cytidylyltransferase activity [Evidence IEA]; GO_function: GO:0004306 - ethanolamine-phosphate cytidylyltransferase activity [Evidence IDA,IMP,ISS] [PMID 8982874]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006646 - phosphatidylethanolamine biosynthetic process [Evidence IEA]; GO_process: GO:0006646 - phosphatidylethanolamine biosynthetic process [Evidence IMP] [PMID 8982874]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
codon start: 1
product: ethanolamine-phosphate cytidylyltransferase
translation: MTHSEINSTETTSTPLREDRYWVDGCFDFTHHGHAGAIRQARKLANELYVGIHTDEEIYVNKGPVVMKLEERVTAVEACKWCTKSVPGAPYVTDPEVLDSYGCKYVVHGDDITTDADGNDCYQVVKDMGRFVVVKRTPNISTTDLVDRMLSSRTTHHIESITPSNYSSHVLINDEDSLTRFKDYATAVDAKAPWSGVYVSVDDKTSVLVEPAAGVADKLKKNAFYVDGGFDLFFMGHIEFLRLVHEEAQRSNAVVVVGLHDDATVNSVKGENYPIMNQFERALCVLQCKYVDSVVIGAPFTPDEPFINSLSPHMTIKQVLHGPTPIVGEKGTKTVDPYVYVKEQGIYKQIGPHKYDDVSSNKIVDRVLEYREQYEERQRKKGVKAVNERDLEAIEKATAK
SIO_010081: AWJ20_3768
subclass of: SO_0000673
so part of: AWJ20_3768
location: 209713..210915
location: region:209713-210915:1
so has part: feature:209713-210915:1:exon

XP_018733451.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:209713-210915:1:exon

AWJ20_3769
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CHS1
locus tag: AWJ20_3769
so part of: sequence
location: <214505..>217816
location: region:214505-217816:1
so has part: feature:214505-217816:1:exon
subclass of: SO_0000010

30035826
type: Gene
SIO_000068: ncbigene

position:214505:1
position: 214505
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:217816:1
position: 217816
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:214505-217816:1:exon

AWJ20_3769
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CHS1
locus tag: AWJ20_3769
product: chitin synthase CHS1
transcript id: XM_018880797.1
SIO_010081: AWJ20_3769
subclass of: SO_0000673
so part of: AWJ20_3769
location: <214505..>217816
location: region:214505-217816:1
so has part: feature:214505-217816:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:214505-217816:1:exon

AWJ20_3769
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CHS1
locus tag: AWJ20_3769
inference: similar to AA sequence:KEGG_Orthology:K00698
note: Chitin synthase I; requires activation from zymogenic form in order to catalyze the transfer of N-acetylglucosamine (GlcNAc) to chitin; required for repairing the chitin septum during cytokinesis; transcription activated by mating factor; GO_component: GO:0045009 - chitosome [Evidence IDA] [PMID 8970154]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8970154]; GO_function: GO:0004100 - chitin synthase activity [Evidence IEA,IEA]; GO_function: GO:0004100 - chitin synthase activity [Evidence IDA] [PMID 7952171]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0006031 - chitin biosynthetic process [Evidence IEA]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IMP] [PMID 2523889]
codon start: 1
product: chitin synthase CHS1
translation: MTPNTGPESSGGHAHNQYYSYDDNPDPYGHQDQEEGDRVPLNPSGGPDGLGHMPSPNPYQGGMDQSGMGFGNHDVHGGPPGGPQGYAEDDQYYEYPIGQQHHEPVDNQYYDPYAHTAATPGVGVGPIPGMNPMNHVPPPMPGPPPAPIPPPQPAMPYDTHPINPYSNPPTNPYGNPFENEPAFESQYNLPQEPESYLLKPVYPPPQPLHHAMDTNHSPFSSYFGSTNDDVDDFHPFPVQGDQYALNTYEDDDDTEDSDSSDGRDDSFAYQPPVAPQPIPAGAAVSGMPLPSGPTPPPIMGAPLPVAPPPNMQPRRAKTMKRVRLFKGNLVLDCPVSGTLLSQFPDDLEGQREFTHMRYSAATCDPKDFKLNGFTMRQNCYTHPRATELFIVITIYNESDILLGKTLQGVFRNIKHLSSRTRSKTWGKDAWKKVVVCVVADGREKLNPRARALMAALGVYQDGLAKNMVNDRPVDAHIYEYTTRVGISHVDTTVKLVTEKTVPVQMIFCLKEHNKKKINSHRWFFQAFGPILNPNICVLLDAGTQPGHDSIYHLWKAFDVNPHVGGACGEITAGLGTGFRKLLNPLVAAQNFEYKMSNILDKPLESVFGFISVLPGAFSAYRYVALQNEPLEKYFKGETLHDSGAGIFTANMYLAEDRILCYELVAKRGDRWLLKYVKSAHAETDVPDKLDELVLQRRRWLNGSFFAAVYAQVHMFAIWRSSHSILRKLSLHLEFLYQMVSMLFSWFSIGNYFLVFRILTSSLSDSSLGFAPGKILSVLFLWIYAGCLVTIFVLSFGNRPSGTAHFYYAIVAFFAFLMAYLMFAAIYISVKSVEYAICANGGFSPALVVKNQTFRDLVISILSTYALYFISSFLFFEPWHMFTSFLQYLLISPSYINVLNVYAFCNIHDISWGTKGDTSQKMDLGVAKLKTTQSKKEILEVDVPTSKEEINSSYLNQISLLRDEAKEEKKVVSKEDKNIDYYAQFRSAVVLSWIFTNVALVAVVLNTAGLNVFNSNSNSSNPNSGTLKRGLDMGIELLKRQTPAAPASPAPAAGAGSGSCSSIGVGEDVQTQIYLSVILWSVAALAAFRFIGSVWYLVLRLMGR
SIO_010081: AWJ20_3769
subclass of: SO_0000673
so part of: AWJ20_3769
location: 214505..217816
location: region:214505-217816:1
so has part: feature:214505-217816:1:exon

XP_018733452.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:214505-217816:1:exon

AWJ20_3770
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: dtd
locus tag: AWJ20_3770
so part of: sequence
location: <218027..>218737
location: region:218027-218737:1
so has part: feature:218027-218737:1:exon
subclass of: SO_0000010

30035828
type: Gene
SIO_000068: ncbigene

position:218027:1
position: 218027
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:218737:1
position: 218737
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:218027-218737:1:exon

AWJ20_3770
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: dtd
locus tag: AWJ20_3770
product: D-tyrosyl-tRNA(Tyr) deacylase
transcript id: XM_018880799.1
SIO_010081: AWJ20_3770
subclass of: SO_0000673
so part of: AWJ20_3770
location: <218027..>218737
location: region:218027-218737:1
so has part: feature:218027-218737:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:218027-218737:1:exon

AWJ20_3770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: dtd
locus tag: AWJ20_3770
note: Fungal Genetics Stock Center 12543
codon start: 1
product: D-tyrosyl-tRNA(Tyr) deacylase
translation: MLVYSRFALRRAYTSKCIHEKLFHTSRTLLSEVNPVYPDDSHLTKIKKPGMLFSEPIDPNLRMGYNPLYSSPVGGQIAFTKRWSIGLSLIGSYVGYLVHDVTGASDLAGIIGAAVLIAPLPLVQFFAGNYVTNIYRLYRKDEPQTYENLTKDETIVLERIGLFGRKTYATAVKVQDLRLVNKRFGWVNWEYKDPKTNFSTKFYVADNIGGMKMDRIWGIIEKNSGVDNGRSFLNEP
SIO_010081: AWJ20_3770
subclass of: SO_0000673
so part of: AWJ20_3770
location: 218027..218737
location: region:218027-218737:1
so has part: feature:218027-218737:1:exon

XP_018733453.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:218027-218737:1:exon

AWJ20_3771
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3771
so part of: sequence
location: <222301..>223590
location: region:222301-223590:1
so has part: feature:222301-223590:1:exon
subclass of: SO_0000010

30035829
type: Gene
SIO_000068: ncbigene

position:222301:1
position: 222301
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:223590:1
position: 223590
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:222301-223590:1:exon

AWJ20_3771
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3771
product: hypothetical protein
transcript id: XM_018880800.1
SIO_010081: AWJ20_3771
subclass of: SO_0000673
so part of: AWJ20_3771
location: <222301..>223590
location: region:222301-223590:1
so has part: feature:222301-223590:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:222301-223590:1:exon

AWJ20_3771
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3771
codon start: 1
product: hypothetical protein
translation: MTQVSYLRALIVGAGSRGRAYTRSLRHLDYIRVTGVAEPSGPRRKKLINYCHQVYPDKVAITEYSDWKESLADSGNYDCVIICVLDDMHREVAVAFANAGKHMLCEKPLATTLEDCEAIVKAVKENNVLLAIGHVLRYSPHNIALKELLDSGVVGEIININHTEPVGWYHFAHSYVRGNWRREDTTTFSLMAKCCHDIDVLMWLLGYENLRRVSSFGSLSYFKKENKPEAAGDRCMSCPIEESCAYSAKKIYYDDLAAGRKAWKTKTITDIEDPVHLKKALEEGPYGICVFDADNDVCDNQVVSLDFGKATATMTMIAFSEEVCFRKMCIYGTKGEISTDSRTIKLFDFATRTTKSFTPDTDEESGHGGGDKGLATAFAEALKDVLLHGSSIENATTKHIKCTPEEVLGSHKVVFLAEQARLNGQVISL
SIO_010081: AWJ20_3771
subclass of: SO_0000673
so part of: AWJ20_3771
location: 222301..223590
location: region:222301-223590:1
so has part: feature:222301-223590:1:exon

XP_018733454.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:222301-223590:1:exon

AWJ20_3772
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: UTP14
locus tag: AWJ20_3772
so part of: sequence
location: <223899..>226607
location: region:223899-226607:1
so has part: feature:223899-226607:1:exon
subclass of: SO_0000010

30035830
type: Gene
SIO_000068: ncbigene

position:223899:1
position: 223899
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:226607:1
position: 226607
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:223899-226607:1:exon

AWJ20_3772
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: UTP14
locus tag: AWJ20_3772
product: Utp14p
transcript id: XM_018880801.1
SIO_010081: AWJ20_3772
subclass of: SO_0000673
so part of: AWJ20_3772
location: <223899..>226607
location: region:223899-226607:1
so has part: feature:223899-226607:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:223899-226607:1:exon

AWJ20_3772
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: UTP14
locus tag: AWJ20_3772
inference: similar to AA sequence:KEGG_Orthology:K14567
note: Subunit of U3-containing Small Subunit (SSU) processome complex; involved in production of 18S rRNA and assembly of small ribosomal subunit; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0006364 - rRNA processing [Evidence IEA,IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]
codon start: 1
product: Utp14p
translation: MAKKGVKKRQNRRALSNRAQNAFNLAQDEEDSRLMRGMEPDIENDSDREGEDGEKPAYRIGEVASEDDEDIDSDEALGSDDEEIFESHRRKSNKNDDDDEEDSDDDGYKSVDESEFVSLSEVWDLDDKDERETSGKDKGSSKERLPNKIDENNLLKLDDEILSDSESEADSESQDDSESEGGSDSEGGSSGSDSVLSDEFSDLDEDDIDEEKLANLKNMISGMSEEALAEATRKAKKQRLQMMNIQESEFALPVGGQKLSLSDLTAGVTTEKKQDSGLKLLENNSKQTLAVPLAKRIQQKNDRKAAYELTKEEVSKWEETVKKNREAEHLQFPINPAPQVSKVAAHAPIEPSTELEKKVNNLLTESNLSEEKSVSTFEELAPSKLTMEEVKRRRNELRLMRELMFREEQKARRIKKIKSKSYRKVHKKERERERMMVEGDEESDRESHDIERARERMSLKHKNTGKWAKRMVEQGFTKDKETRGEMEEMLRRGEDLRKKILDDQDNESDSQEIESAGDDDDDEDDETINEQKESLGKGLLAMKFMKDAEQKERQINKAQREALRNAKNLDDFEDLKDETEDAVNQVVNAGRRKFAPGTSEARDEMLDELEKARDETIIDEEKSLENVITKAFDSRTNSRTKSKSKHSKSQEPDEAEEEEANPWLTISSNSKQKSKKVNIVDKNSSTQSKSQDKLRKEKEKLRSSSNDDSGDIDMNEVLRIVDPLASDNEEGDDDASEAVAEGQNDMKRVPRKGLTFKQRELVKRAFAGDDVVEEFQEEKRQKIADEGDKEIDVTLPGWGSWGGSSIKKKKKVIKKVQGIQADKRQDARLKNVIINEKVNKKSSKYNASSVPFPYENREQYERSLRMPIGREWSSRDTFQKLTKPRVIVKQGTVIDPIKAPFK
SIO_010081: AWJ20_3772
subclass of: SO_0000673
so part of: AWJ20_3772
location: 223899..226607
location: region:223899-226607:1
so has part: feature:223899-226607:1:exon

XP_018733455.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:223899-226607:1:exon

AWJ20_3773
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: XBP1
locus tag: AWJ20_3773
so part of: sequence
location: <232657..>235095
location: region:232657-235095:1
so has part: feature:232657-235095:1:exon
subclass of: SO_0000010

30035831
type: Gene
SIO_000068: ncbigene

position:232657:1
position: 232657
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:235095:1
position: 235095
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:232657-235095:1:exon

AWJ20_3773
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: XBP1
locus tag: AWJ20_3773
product: Xbp1p
transcript id: XM_018880802.1
SIO_010081: AWJ20_3773
subclass of: SO_0000673
so part of: AWJ20_3773
location: <232657..>235095
location: region:232657-235095:1
so has part: feature:232657-235095:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:232657-235095:1:exon

AWJ20_3773
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: XBP1
locus tag: AWJ20_3773
note: Transcriptional repressor; binds to promoter sequences of the cyclin genes, CYS3, and SMF2; expression is induced by stress or starvation during mitosis, and late in meiosis; member of the Swi4p/Mbp1p family; potential Cdc28p substrate; relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA,IPI] [PMID 9343412]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IDA] [PMID 9343412]; GO_process: GO:0042149 - cellular response to glucose starvation [Evidence IMP] [PMID 9343412]; GO_process: GO:0034605 - cellular response to heat [Evidence IMP] [PMID 9343412]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 9343412]; GO_process: GO:0071472 - cellular response to salt stress [Evidence IMP] [PMID 9343412]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]
codon start: 1
product: Xbp1p
translation: MSWTPFNGPSGQHEPHGLSDASNQLNGPRRPLPLDSQRAGDASNQSIQYTRSPQTVPLIAPARNVHGRDLLNPTGSSGTGVAPAQPGQHPPSPDLESTSHSDLHLQHQQQHQQQHPYQPSHQRLGSISYQQEHISNQELHLHHQKQNSHQLTGHQNSHILPSHPRQHLDHQLDHQLDHQHHLHVHGHGPLAVGDSSHAHILPNITGNGHNGHHKSHSDMTNMTRAGQITPPPGHNMSGVAVSASSPLPSSASLSAKPHGLANNRKQSLASSSPKAPPKQRVSRTSHLEPANSPGFPVNYPIYPMVDIGTIPVQQVPLLPLPGSIVMKRYATSVDQRNFLTVYEYMVNNQWVIWDYFTGYVHLTGLWKAVGNSKADIVRLVDNSPDLEPVIKRVRGGFLKIQGTWLPYSVARTLASRTCYHIRYALIPIFGPDFPESCLQPHQPGFGQLQLTTTENPRRRRKRSSVGSISGITGLTSVSTANGVSNGAGAGTGGPGAGELSPNPQSPVQRKRRQSELAPSTQPFNSHGLASPRSSHASIMNPVLITPAGSKNDNQRQGMSDSNRIMSLSMTSSSGSTATAGLSPLRHHRHSKSIGSIDTSSLAIGGSIVPRLELNRPSYFKRPAYDEDSQAIEFSSSSDDDDDYEAHLVKRAKHDHSDSIHDTTGRTSKPASGSGPVQVPHSPHHRYILPPPMPVKVVFADETELVESPDEFLAVLQATRSLQQLSAGKAGRRWSLNPASTTASGGSFECGGKLWRWDGGQKLTSTGLAADGDSSPKSQVVERVKSLPDRRYSHGDEPIRQRSNVMNINGLIS
SIO_010081: AWJ20_3773
subclass of: SO_0000673
so part of: AWJ20_3773
location: 232657..235095
location: region:232657-235095:1
so has part: feature:232657-235095:1:exon

XP_018733456.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:232657-235095:1:exon

AWJ20_3774
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RSM10
locus tag: AWJ20_3774
so part of: sequence
location: complement(<235754..>236602)
location: region:235754-236602:-1
so has part: feature:235754-236602:-1:exon
subclass of: SO_0000010

30035832
type: Gene
SIO_000068: ncbigene

position:235754:-1
position: 235754
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:236602:-1
position: 236602
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235754-236602:-1:exon

AWJ20_3774
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RSM10
locus tag: AWJ20_3774
product: mitochondrial 37S ribosomal protein RSM10
transcript id: XM_018880803.1
SIO_010081: AWJ20_3774
subclass of: SO_0000673
so part of: AWJ20_3774
location: complement(<235754..>236602)
location: region:235754-236602:-1
so has part: feature:235754-236602:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:235754-236602:-1:exon

AWJ20_3774
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RSM10
locus tag: AWJ20_3774
inference: similar to AA sequence:KEGG_Orthology:K02946
note: Mitochondrial ribosomal protein of the small subunit; has similarity to E. coli S10 ribosomal protein; essential for viability, unlike most other mitoribosomal proteins; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]; GO_process: GO:0006412 - translation [Evidence IEA]
codon start: 1
product: mitochondrial 37S ribosomal protein RSM10
translation: MNSVRFLAAQCRLATRGVYTPAVRGFRSVSAANSASTPASSQPASEPVRARMSPSGPYVDDTESYSSEHLYPKEGEYVQSSTEEAYGTGRPVPINVELNHYAPIKHKLTHGHRVADVHLRSFTTQNLDFYADFLLRVAFYLRIPVKGVTPLPNKTEKWTVIRSPFAHAKSKENFQRITHKRLIQLYDANPEVVQVFLATAREYSIGGVGVKATLYHKEGLGVIDKLDLPETGAESSSLNPLSLENVDLGSADSEVARAVLDILEDPVFKPLMDEAKPTQKAE
SIO_010081: AWJ20_3774
subclass of: SO_0000673
so part of: AWJ20_3774
location: complement(235754..236602)
location: region:235754-236602:-1
so has part: feature:235754-236602:-1:exon

XP_018733457.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:235754-236602:-1:exon

AWJ20_3775
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: BMT2
locus tag: AWJ20_3775
so part of: sequence
location: <237120..>237908
location: region:237120-237908:1
so has part: feature:237120-237908:1:exon
subclass of: SO_0000010

30035833
type: Gene
SIO_000068: ncbigene

position:237120:1
position: 237120
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:237908:1
position: 237908
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:237120-237908:1:exon

AWJ20_3775
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: BMT2
locus tag: AWJ20_3775
product: Bmt2p
transcript id: XM_018880804.1
SIO_010081: AWJ20_3775
subclass of: SO_0000673
so part of: AWJ20_3775
location: <237120..>237908
location: region:237120-237908:1
so has part: feature:237120-237908:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:237120-237908:1:exon

AWJ20_3775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: BMT2
locus tag: AWJ20_3775
inference: similar to AA sequence:KEGG_Orthology:K18849
note: Nucleolar S-adenosylmethionine-dependent rRNA methyltransferase; methylates adenine (m1A) of the large subunit (LSU) rRNA at position 2142; belongs to Rossmann fold superfamily; green fluorescent protein (GFP)-fusion protein localizes to the nucleolus; YBR141C is not an essential gene; GO_component: GO:0005730 - nucleolus [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 23558746]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence ISM] [PMID 19351663]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016433 - rRNA (adenine) methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016433 - rRNA (adenine) methyltransferase activity [Evidence IMP] [PMID 23558746]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0031167 - rRNA methylation [Evidence IEA,IEA]
codon start: 1
product: Bmt2p
translation: MMKRQASLQAQLDKTIDPAERAGLQDEISRISKALNEEGGLDKYQQASIAGQSTTRGGDSSKILVDWLKDELKTEDQLRTDLSLLEVGCLSVKNACSQSKLFSSIERIDLNSQDPLIKKQDFMERPLPRQNQKETDRFDVISLSLVLNYVPDAVTRGQMLYRTTQFLKPPSTPGRPLPALFLVLPSPCTNNSRYLTEERLLQILQTLGYTLTQRKEAKKVVYWLLTLEKPPLTPSQAAKLKGRFKKKLLNDGKIRNNFAVVI
SIO_010081: AWJ20_3775
subclass of: SO_0000673
so part of: AWJ20_3775
location: 237120..237908
location: region:237120-237908:1
so has part: feature:237120-237908:1:exon

XP_018733458.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:237120-237908:1:exon

AWJ20_3776
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: AVT1
locus tag: AWJ20_3776
so part of: sequence
location: complement(<238833..>240815)
location: region:238833-240815:-1
so has part: feature:238833-240815:-1:exon
subclass of: SO_0000010

30035834
type: Gene
SIO_000068: ncbigene

position:238833:-1
position: 238833
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:240815:-1
position: 240815
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:238833-240815:-1:exon

AWJ20_3776
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: AVT1
locus tag: AWJ20_3776
product: Avt1p
transcript id: XM_018880805.1
SIO_010081: AWJ20_3776
subclass of: SO_0000673
so part of: AWJ20_3776
location: complement(<238833..>240815)
location: region:238833-240815:-1
so has part: feature:238833-240815:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:238833-240815:-1:exon

AWJ20_3776
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: AVT1
locus tag: AWJ20_3776
inference: similar to AA sequence:KEGG_Orthology:K15015
note: Vacuolar transporter; imports large neutral amino acids into the vacuole; member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 11274162]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IMP] [PMID 11274162]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015186 - L-glutamine transmembrane transporter activity [Evidence IMP] [PMID 11274162]; GO_function: GO:0015188 - L-isoleucine transmembrane transporter activity [Evidence IMP] [PMID 11274162]; GO_function: GO:0005302 - L-tyrosine transmembrane transporter activity [Evidence IMP] [PMID 11274162]; GO_function: GO:0005215 - transporter activity [Evidence ISS] [PMID 11274162]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IMP] [PMID 11274162]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007034 - vacuolar transport [Evidence IMP] [PMID 11274162]
codon start: 1
product: Avt1p
translation: MPGTNSQIPSSPDRNGSAAHGSSAWHGGSSTSGLPSSATYGTPGLGTGGTTTTGGGIGSGNLTSSRRSSFFNGAGGGLNSIEHFASSYTRAQSFLAIEPPSEISRQRSFFDETGSPVIPSSFASRYRPHFDEGTDFTDAIDEDGYESSTYLDDNEDASGHISTGGTEPSQTDHLLGHNESLYGSYKSTSTSGGYLNIPTHNRRHPRSRRLSLYTAEPDQGTHILGESQAISTGTEQDPVIIQKVEDEDGHITTVIAGQSTAPQTVFNSVNILIGIGLLALPLGFRYAGWVIGCILLVISAASTFYSAKLLAKCLDTDSTIVTYADVAYAAFGSRARILVSMLFTIELMGAGVSLVVLFSDSLHSLVPSISQLQWKFVAFAILTPPCFLPLRILSFSSIMGITATFALVVIVLFDGFYKADSPGSLLHPATTWMWPEKWSLLPMSIGIFMAPWGGHAVFPNIYRDMRHPQKYGQCLKTTYKITFLVDASMGVLGFLMFGQDVMDEVTKSILLTPGYPESLNYLITLLIATIPLAKTPLNARPIVSTLDILFGIDKVEFGDKTSHHFGARIGKFLVRVSVVASFVLMAIAFPDFDRIIAFFGSLLCVTICMILPLSFYLKLYAGRISKFELILDYILLVFFSILAIVGTIWCMLPADLIGRE
SIO_010081: AWJ20_3776
subclass of: SO_0000673
so part of: AWJ20_3776
location: complement(238833..240815)
location: region:238833-240815:-1
so has part: feature:238833-240815:-1:exon

XP_018733459.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:238833-240815:-1:exon

AWJ20_3777
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3777
so part of: sequence
location: <242840..>243553
location: region:242840-243553:1
so has part: feature:242840-243553:1:exon
subclass of: SO_0000010

30035835
type: Gene
SIO_000068: ncbigene

position:242840:1
position: 242840
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:243553:1
position: 243553
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:242840-243553:1:exon

AWJ20_3777
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3777
product: hypothetical protein
transcript id: XM_018880806.1
SIO_010081: AWJ20_3777
subclass of: SO_0000673
so part of: AWJ20_3777
location: <242840..>243553
location: region:242840-243553:1
so has part: feature:242840-243553:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:242840-243553:1:exon

AWJ20_3777
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3777
codon start: 1
product: hypothetical protein
translation: MILASLELVRLQLPTDPWQQDAARARQQAVRKGQNPSFWFGPTGYRAVEYKEWKRRMDQALNKAQNVGKSVNLAKEVYSEIRENNRQLSHKILEELKRENEQDAQTRENKALIELKEEEGHDIASSSSASTSNSNINSSTSDSRNLNTNNNNNSNGKSATGEKSRTDSLSVDSLMSAIESLSTTKSDEWDALEPWEKLRLETDIAVRIMPHTRGVQEQAADKSLSINLSLDDDSPST
SIO_010081: AWJ20_3777
subclass of: SO_0000673
so part of: AWJ20_3777
location: 242840..243553
location: region:242840-243553:1
so has part: feature:242840-243553:1:exon

XP_018733460.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:242840-243553:1:exon

AWJ20_3778
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3778
so part of: sequence
location: complement(<243867..>245744)
location: region:243867-245744:-1
so has part: feature:243867-245744:-1:exon
subclass of: SO_0000010

30035836
type: Gene
SIO_000068: ncbigene

position:243867:-1
position: 243867
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:245744:-1
position: 245744
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:243867-245744:-1:exon

AWJ20_3778
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3778
product: hypothetical protein
transcript id: XM_018880807.1
SIO_010081: AWJ20_3778
subclass of: SO_0000673
so part of: AWJ20_3778
location: complement(<243867..>245744)
location: region:243867-245744:-1
so has part: feature:243867-245744:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:243867-245744:-1:exon

AWJ20_3778
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3778
inference: similar to AA sequence:KEGG_Orthology:K03510
codon start: 1
product: hypothetical protein
translation: MSKVVISLDLDAFYCAVEQHYDPTLAGDVPFIVYQKNCVATLSYAARNLGLKKLSTVSEAVKKVPGIRLVNGESLAKYRAEGKKILDFVSGLFGGCVPMERLGLEELRIDITKVVDYNMENLRNTGLLDIIRNSGAEVGDESPEGIYLFMTDGDTPTNDSGISGRRVIGGGGGLDGSEADIDKTPSSDPFFCENFFFNVPAKVFPLDRNNALPTFTDSEEHLRCYIGGQLASYIMERLSMDMGYNCSIGLGPNKTIAKMACSLNKPKGLTIVLPEHVQDYLDSTFVSAIPGFGHKTVRRIAEDIAFSDRPGNGLFSTFKRENENPTSAAPIRDSRTPTPDSPLATNSNEAKLSSVEVSPPTLQKPVSIEASPSSNKPVSVETSPSSKKPISTIKSSGGVEKLELHALMDREFGRHLTVYDVRTNLHRTDFVRLFGQKQGSVLWDLMHGIDNSPVKQASDIPTQISIEDTYKRIDTFELVKEAIVSLTNSLLYQIHCDLIDSGDLTWRVFPTTFRLTMSRGDFNPYAVRKSKSTRLPPSFFDEMLSISSTPDPTPLSYEVLSRKLFQDPILALYNQLSTARAGEKLNVRLLNVAVTNFDPTRPTATRSKPSSRQSRGVMDRFLNLK
SIO_010081: AWJ20_3778
subclass of: SO_0000673
so part of: AWJ20_3778
location: complement(243867..245744)
location: region:243867-245744:-1
so has part: feature:243867-245744:-1:exon

XP_018733461.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:243867-245744:-1:exon

AWJ20_3779
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: YPT7
locus tag: AWJ20_3779
so part of: sequence
location: <247766..>248209
location: region:247766-248209:1
so has part: feature:247766-248209:1:exon
subclass of: SO_0000010

30035837
type: Gene
SIO_000068: ncbigene

position:247766:1
position: 247766
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:248209:1
position: 248209
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:247766-248209:1:exon

AWJ20_3779
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: YPT7
locus tag: AWJ20_3779
product: Rab family GTPase YPT7
transcript id: XM_018880808.1
SIO_010081: AWJ20_3779
subclass of: SO_0000673
so part of: AWJ20_3779
location: <247766..>248209
location: region:247766-248209:1
so has part: feature:247766-248209:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:247766-248209:1:exon

AWJ20_3779
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: YPT7
locus tag: AWJ20_3779
inference: similar to AA sequence:KEGG_Orthology:K07897
note: Rab family GTPase; GTP-binding protein of the rab family; required for homotypic fusion event in vacuole inheritance, for endosome-endosome fusion; interacts with the cargo selection/retromer complex for retrograde sorting; similar to mammalian Rab7; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 11853670]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22593205]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0030906 - retromer complex, inner shell [Evidence IPI] [PMID 22593205]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 11210571]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence TAS] [PMID 9714809]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 1473149]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 18701704]; GO_process: GO:0072665 - protein localization to vacuole [Evidence IMP] [PMID 22593205]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0032889 - regulation of vacuole fusion, non-autophagic [Evidence IMP] [PMID 11598008]; GO_process: GO:0032889 - regulation of vacuole fusion, non-autophagic [Evidence IMP] [PMID 7489715]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IPI] [PMID 22593205]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0000011 - vacuole inheritance [Evidence IDA] [PMID 7489715]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IDA] [PMID 9015302]
codon start: 1
product: Rab family GTPase YPT7
translation: MQIWDTAGQERFQSLGVAFYRGADCCVLMYDVNNAKSFEALENWRDEFLIQANPRDPDSFPFVVIGNKIDVEDSKRAVSTKRAQAFCASKGNLPYFETSAKEATGVEQAFEVVARNALQQEDAQDFSQEYSDAININLDSDSSSCAC
SIO_010081: AWJ20_3779
subclass of: SO_0000673
so part of: AWJ20_3779
location: 247766..248209
location: region:247766-248209:1
so has part: feature:247766-248209:1:exon

XP_018733462.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:247766-248209:1:exon

AWJ20_3780
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ACS2
locus tag: AWJ20_3780
so part of: sequence
location: <250075..>252407
location: region:250075-252407:1
so has part: feature:250075-252407:1:exon
subclass of: SO_0000010

30035839
type: Gene
SIO_000068: ncbigene

position:250075:1
position: 250075
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:252407:1
position: 252407
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:250075-252407:1:exon

AWJ20_3780
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ACS2
locus tag: AWJ20_3780
product: acetate--CoA ligase ACS2
transcript id: XM_018880810.1
SIO_010081: AWJ20_3780
subclass of: SO_0000673
so part of: AWJ20_3780
location: join(<250075..250118,250484..>252407)
location: region:250075-252407:1
so has part: feature:250075-250118:1:exon
so has part: feature:250484-252407:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:250075-250118:1:exon

position:250118:1
position: 250118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:250484-252407:1:exon

position:250484:1
position: 250484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

AWJ20_3780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ACS2
locus tag: AWJ20_3780
inference: similar to AA sequence:KEGG_Orthology:K01895
note: Acetyl-coA synthetase isoform; along with Acs1p, acetyl-coA synthetase isoform is the nuclear source of acetyl-coA for histone acetylation; mutants affect global transcription; required for growth on glucose; expressed under anaerobic conditions; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 16857587]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9711835]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 19618123]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16857587]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19618123]; GO_function: GO:0016208 - AMP binding [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003987 - acetate-CoA ligase activity [Evidence IEA,IEA]; GO_function: GO:0003987 - acetate-CoA ligase activity [Evidence IDA] [PMID 8910545]; GO_function: GO:0016880 - acid-ammonia (or amide) ligase activity [Evidence IDA] [PMID 18305111]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006085 - acetyl-CoA biosynthetic process [Evidence IDA] [PMID 8910545]; GO_process: GO:0019427 - acetyl-CoA biosynthetic process from acetate [Evidence IEA]; GO_process: GO:0016573 - histone acetylation [Evidence IMP] [PMID 16857587]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006090 - pyruvate metabolic process [Evidence IEA]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 19618123]
codon start: 1
product: acetate--CoA ligase ACS2
translation: MTALLRQGCYSKLWRKHPSKTHLSSFDHYSQLYKESIENPDKFFGDAARELLSWDRDFKTVSSGGFEHGDVAWFLEGQLNASYNCVDRHAFANPEKIALIYEADDAKDSRNVTYGELLRQVSKLAAVLTSFGVKKGDTVAIYLPNIPEAIVALLAVTRIGAIHSVIFAGFSSGSLKDRINDAKCKVIITSDEGRRGGKTVYTKKIVDDSLKNAPSIEKVLVFKRTGSEIPWTEGRDFWWHEELDKQRAYSPPVAVNSEDPLFLLYTSGSTGSPKGVVHSTAGYLLGAAITAKHVFDIQEKDILFTAGDVGWITGHTYALYAPLLLGATSVIFEGTPAYPNLSRYWQIIEKYKVTQFYVAPTALRLLKRGGEEFITGHDLSSLRTLGSVGEPIAGEIWEWYHELIGNSECHIADTYWQTETGSHIIAPLAGITPMKPGSASFPFFGIDLAIIDPVTGKELVGNDVEGVLAVKKPWPSIARSVWGAHQRYLDTYLKPYPGLYFTGDGAARDHEGFYWIRGRVDDVVNVSGHRLSTAEIEASLIEHHSVAESAVVGVSDDLTGQAVIAFVSLKDGFDHTQEIKKELIMHVRKEIGPFAAPKTVIVIDDLPKTRSGKIMRRILRKIVSNEADSIGDISTLNNPQSVDQIIAAVDIQLKK
SIO_010081: AWJ20_3780
subclass of: SO_0000673
so part of: AWJ20_3780
location: join(250075..250118,250484..252407)
location: region:250075-252407:1
so has part: feature:250075-250118:1:exon
so has part: feature:250484-252407:1:exon

XP_018733463.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:250075-250118:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:250484-252407:1:exon

AWJ20_3781
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3781
so part of: sequence
location: <253907..>254410
location: region:253907-254410:1
so has part: feature:253907-254410:1:exon
subclass of: SO_0000010

30035840
type: Gene
SIO_000068: ncbigene

position:253907:1
position: 253907
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:254410:1
position: 254410
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:253907-254410:1:exon

AWJ20_3781
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3781
product: Usp (universal stress protein) family protein
transcript id: XM_018880811.1
SIO_010081: AWJ20_3781
subclass of: SO_0000673
so part of: AWJ20_3781
location: <253907..>254410
location: region:253907-254410:1
so has part: feature:253907-254410:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:253907-254410:1:exon

AWJ20_3781
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3781
codon start: 1
product: Usp (universal stress protein) family protein
translation: MALEERQYRFEGERFLRQILAKNVNNKKLSLIVEFPVGKIEDMIQRMIQIYEPAILVVGTRGRSMDGFKGLLLPGSVSKYCLQHSPVPVIVVRGIQKLAKRKAKRDADPARRAYREMLYQAQLPAMKLYPQGSTGKQLAPTIPAFLRPDHYGSRSATPSRPSTPAGH
SIO_010081: AWJ20_3781
subclass of: SO_0000673
so part of: AWJ20_3781
location: 253907..254410
location: region:253907-254410:1
so has part: feature:253907-254410:1:exon

XP_018733464.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:253907-254410:1:exon

AWJ20_3782
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RAD10
locus tag: AWJ20_3782
so part of: sequence
location: complement(<254505..>255671)
location: region:254505-255671:-1
so has part: feature:254505-255671:-1:exon
subclass of: SO_0000010

30035841
type: Gene
SIO_000068: ncbigene

position:254505:-1
position: 254505
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:255671:-1
position: 255671
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:254505-255671:-1:exon

AWJ20_3782
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RAD10
locus tag: AWJ20_3782
product: Rad10p
transcript id: XM_018880812.1
SIO_010081: AWJ20_3782
subclass of: SO_0000673
so part of: AWJ20_3782
location: complement(<254505..>255671)
location: region:254505-255671:-1
so has part: feature:254505-255671:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:254505-255671:-1:exon

AWJ20_3782
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RAD10
locus tag: AWJ20_3782
inference: similar to AA sequence:KEGG_Orthology:K10849
note: Single-stranded DNA endonuclease (with Rad1p); cleaves single-stranded DNA during nucleotide excision repair and double-strand break repair; subunit of Nucleotide Excision Repair Factor 1 (NEF1); homolog of human ERCC1 protein; GO_component: GO:0000110 - nucleotide-excision repair factor 1 complex [Evidence IPI] [PMID 8621533]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9852079]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003684 - damaged DNA binding [Evidence IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 1741062]; GO_function: GO:0000014 - single-stranded DNA endodeoxyribonuclease activity [Evidence IDA] [PMID 8253764]; GO_process: GO:0006277 - DNA amplification [Evidence IMP] [PMID 23271978]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0000733 - DNA strand renaturation [Evidence IDA] [PMID 1741062]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0000736 - double-strand break repair via single-strand annealing, removal of nonhomologous ends [Evidence IMP] [PMID 7891718]; GO_process: GO:0000710 - meiotic mismatch repair [Evidence IMP] [PMID 11514439]; GO_process: GO:0006312 - mitotic recombination [Evidence IMP] [PMID 2188090]; GO_process: GO:0006296 - nucleotide-excision repair, DNA incision, 5'-to lesion [Evidence IDA] [PMID 7559571]; GO_process: GO:0000735 - removal of nonhomologous ends [Evidence IMP] [PMID 7891718]
codon start: 1
product: Rad10p
translation: MEADRTAAILKAAAALRGKSGNNNGSSNSNGASSGSAPPSNQATPGGSNSNSAPAPPLATSTVARTGIQISGTNIPILNSRQTGASATSTSYSSGSSTAANGSGSGPSKRSYGASSVPGPSGHYRAANSGMSTYSRASPTTSSSLPTNTTSASSATPGSTSTAKANTTSSIIVNAKKQKQNPVLKHIRGVGYYMDDIVPDFITGHNSCALFLSIKYHNIHKEYIYKRIQQLNKAFEHRVLLVLVDVDNPAAALLELDIISLRAGLQMIITWNMEEAGKYLVLLKQLENASATGISGQKKESYKEQLIEVMNRISRSSINKTDAVTLVANFGSLKNAILDGGDNVELIHGWGSTKAKVFRDAINEPFINHRQYDMKPYKSESQVDSELP
SIO_010081: AWJ20_3782
subclass of: SO_0000673
so part of: AWJ20_3782
location: complement(254505..255671)
location: region:254505-255671:-1
so has part: feature:254505-255671:-1:exon

XP_018733465.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:254505-255671:-1:exon

AWJ20_3783
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3783
so part of: sequence
location: <258775..>259539
location: region:258775-259539:1
so has part: feature:258775-259539:1:exon
subclass of: SO_0000010

30035842
type: Gene
SIO_000068: ncbigene

position:258775:1
position: 258775
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:259539:1
position: 259539
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:258775-259539:1:exon

AWJ20_3783
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3783
product: hypothetical protein
transcript id: XM_018880813.1
SIO_010081: AWJ20_3783
subclass of: SO_0000673
so part of: AWJ20_3783
location: <258775..>259539
location: region:258775-259539:1
so has part: feature:258775-259539:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:258775-259539:1:exon

AWJ20_3783
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3783
codon start: 1
product: hypothetical protein
translation: MSSNTIYFVSGGNRGIGFALVKKLSSLANSVVITTARSPAKATDLKDWQKEHSNVHVLKYDASVHNDATELATQIEKLTGGIDVFVANSGISEEPMTVLETPIESWTRLYAINTLGPIVLFKALYPLIAKRDTRKVVFISSGLGSQKNMSDAFGTSSYGQSKSALNFTAKELSLELAKENFVVVPVHPGLVNTEMGSGYVDNLGKNSGEFADVLRANVMITTEQSADGIANVIATLSKEDSGKFLGYDRSTLEW
SIO_010081: AWJ20_3783
subclass of: SO_0000673
so part of: AWJ20_3783
location: 258775..259539
location: region:258775-259539:1
so has part: feature:258775-259539:1:exon

XP_018733466.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:258775-259539:1:exon

AWJ20_3784
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: DTD1
locus tag: AWJ20_3784
so part of: sequence
location: complement(<261086..>261400)
location: region:261086-261400:-1
so has part: feature:261086-261400:-1:exon
subclass of: SO_0000010

30035843
type: Gene
SIO_000068: ncbigene

position:261086:-1
position: 261086
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:261400:-1
position: 261400
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:261086-261400:-1:exon

AWJ20_3784
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: DTD1
locus tag: AWJ20_3784
product: Dtd1p
transcript id: XM_018880814.1
SIO_010081: AWJ20_3784
subclass of: SO_0000673
so part of: AWJ20_3784
location: complement(<261086..>261400)
location: region:261086-261400:-1
so has part: feature:261086-261400:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:261086-261400:-1:exon

AWJ20_3784
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: DTD1
locus tag: AWJ20_3784
inference: similar to AA sequence:KEGG_Orthology:K07560
note: D-Tyr-tRNA(Tyr) deacylase; functions in protein translation, may affect nonsense suppression via alteration of the protein synthesis machinery; ubiquitous among eukaryotes; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0097358 - D-leucyl-tRNA(Leu) deacylase activity [Evidence IMP] [PMID 10918062]; GO_function: GO:0051500 - D-tyrosyl-tRNA(Tyr) deacylase activity [Evidence IMP] [PMID 10766779]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]; GO_process: GO:0019478 - D-amino acid catabolic process [Evidence IEA]; GO_process: GO:1900832 - D-leucine catabolic process [Evidence IMP] [PMID 10918062]; GO_process: GO:1900829 - D-tyrosine catabolic process [Evidence IMP] [PMID 10918062]; GO_process: GO:0006399 - tRNA metabolic process [Evidence IMP] [PMID 10918062]
codon start: 1
product: Dtd1p
translation: MPNFQEKVLTNKSVSQFTLLAKTKKGAKPDFHAAAKGDHARTLYNKVLEEVAKGLPGGQSRVGDGVFGAMMDVALVNDGPVTIQLDSKETKSGNILQPSPTPPQ
SIO_010081: AWJ20_3784
subclass of: SO_0000673
so part of: AWJ20_3784
location: complement(261086..261400)
location: region:261086-261400:-1
so has part: feature:261086-261400:-1:exon

XP_018733467.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:261086-261400:-1:exon

AWJ20_3785
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: pof10
locus tag: AWJ20_3785
so part of: sequence
location: <262458..>265166
location: region:262458-265166:1
so has part: feature:262458-265166:1:exon
subclass of: SO_0000010

30035844
type: Gene
SIO_000068: ncbigene

position:262458:1
position: 262458
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:265166:1
position: 265166
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:262458-265166:1:exon

AWJ20_3785
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: pof10
locus tag: AWJ20_3785
product: F-box protein Pof10
transcript id: XM_018880815.1
SIO_010081: AWJ20_3785
subclass of: SO_0000673
so part of: AWJ20_3785
location: <262458..>265166
location: region:262458-265166:1
so has part: feature:262458-265166:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:262458-265166:1:exon

AWJ20_3785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: pof10
locus tag: AWJ20_3785
codon start: 1
product: F-box protein Pof10
translation: MHSQASGSTDTPKTSEIATESATVSADTTATSSQHVSQEYEPEAVESATADSSFDNSNITSDGSSAEDEATDLDQITDNAIKISGYERHLDQDVDEVIPSHRRSNVTSNLPFQSLSSDRKLKGKTSNNPFAVPPSVAENLPNEILVSVFSYLSPGCLDAASLVCRKWHQAASEASWRASFLRHFSSAKFNRVTSSLKWRTELMTRLDYLHKWKKGHCNNLSFNALIWNISHVFCDFEASRITAFSIWRGIGTIADPTRGKVANQRVFTNKMLQAVADESCVDGSRFGLIYGFFSDGRVQATLFSHETRLRDYVTMKGPRHFGDVSAVWINKLESPRTTNKVAALSAGEDGHVFQWEFNTCKLVRDFAVCPQYTDGEDEEGKPKIVKSRRIIHIQCDSKDKIVCINSHGEVFASVGGSEFVLIGCFIHPVVQDDTSAVSVVSYFDVDFSSNYVVYAHGQYAMRFKLTLDKSKFESVHFSLGGMSPHGYITAISMDHTTFPQSDLSTDTPGLNFRYVAAATSDNLVFVWLLQDNADENGSIAPLRRSESPFQVSEESQIGGVLPNEIPEFRPSISAIALNSMVLLLGSYNGVTVALDLLTGEFLRVVSARFSKRALNLRATEDPNSVSLWPITHLEIDPDPANPHGIIVVRSAIQYFDLGADLRKSTIKKKGVQKKRNARVPYEGQGLSRARLSEDIEMDLEMMELEDEEIDEARQHRQHLDGYLAHDLSEEDQLKYAMLLSEEAAKKESQPKTEEEEDEEMRRAIDLSIAESGAAASLPSSSQTNEKASSSKHLDSPPPSYDDMDEDLKLAIELSRAEAGTSDAESLYAVPNYINRGESSTHNQSDQEQLDLELKLAIEMSKEDSGYISDSQLYDPPSAGANPDYDSDLELAMRLSLSEANKS
SIO_010081: AWJ20_3785
subclass of: SO_0000673
so part of: AWJ20_3785
location: 262458..265166
location: region:262458-265166:1
so has part: feature:262458-265166:1:exon

XP_018733468.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:262458-265166:1:exon

AWJ20_3786
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3786
so part of: sequence
location: complement(<265219..>267531)
location: region:265219-267531:-1
so has part: feature:265219-267531:-1:exon
subclass of: SO_0000010

30035845
type: Gene
SIO_000068: ncbigene

position:265219:-1
position: 265219
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:267531:-1
position: 267531
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:265219-267531:-1:exon

AWJ20_3786
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3786
product: hypothetical protein
transcript id: XM_018880816.1
SIO_010081: AWJ20_3786
subclass of: SO_0000673
so part of: AWJ20_3786
location: complement(<265219..>267531)
location: region:265219-267531:-1
so has part: feature:265219-267531:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:265219-267531:-1:exon

AWJ20_3786
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3786
codon start: 1
product: hypothetical protein
translation: MLSASISRDFTTASLVCNLGYTLQSMACGFFVNAPTMPVYVRWTRWIAYVYYAFGTVVSNQFNGFLGDCPYDLADDRCDPYTGEYILQTLGFPKNWILVPMMVNIGWAVGFHILAYLLLKYVRVSVAVSKTFTVKKIEEVAAVPSTRSDSARSEITVTLNDIRLSVIRRQRLGLTTREIEILRGISATFVPGSINAILGPSGSGKSSLLNFMADRLHSSFNQKYMSTGDIIFNDKLPSRSLVRSLCSYVTQEDDGLLPSLTVRETLYYAADLRLPKTMSKQEKRARANEIIMKMGLKDCADTLIGGEFVKGISGGEKRRVTISIQLLNDPKILLLDEPTSGLDSFIASSILQVLKALAEEGRTIICTIHQPRSDLFAQFGNILLLAKGGRVAYNGQSTQMLDYFASLNHPCPPLTNPADFVLDLVSVNLQSEEKESISRLKVTKLLDHWQNVEDPALERPLVDAHLGLAAAEAEFSSQVREPSKFLPAYQTLLRRSTLNFSRSPHMIVARIMQVAGIGIIFALFFSPLKDDMIGVTNRLGLVQEITALYFVGMLNNMAIYPYDRSVFYREHDDNVYGVLPFFLVYLTLELPFECITSLIFAVFLVLVPGLPRTPELFFACAYCALAIVNCGESIGIAFNTLFLHEGFAVNLISVVLSIGCLMAGIMSLEMPGFLKGVNWLSPLKYAVSVMINMSFDGQTFNCVGQAIDADGGCEFDSGAKVLENYGLKANVPAYLGGIAVAAVVYRVLALVVLKINRLKLGIKTLSRNSR
SIO_010081: AWJ20_3786
subclass of: SO_0000673
so part of: AWJ20_3786
location: complement(265219..267531)
location: region:265219-267531:-1
so has part: feature:265219-267531:-1:exon

XP_018733469.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:265219-267531:-1:exon

AWJ20_3787
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3787
so part of: sequence
location: complement(<267669..>269339)
location: region:267669-269339:-1
so has part: feature:267669-269339:-1:exon
subclass of: SO_0000010

30035846
type: Gene
SIO_000068: ncbigene

position:267669:-1
position: 267669
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:269339:-1
position: 269339
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:267669-269339:-1:exon

AWJ20_3787
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3787
product: hypothetical protein
transcript id: XM_018880817.1
SIO_010081: AWJ20_3787
subclass of: SO_0000673
so part of: AWJ20_3787
location: complement(<267669..>269339)
location: region:267669-269339:-1
so has part: feature:267669-269339:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:267669-269339:-1:exon

AWJ20_3787
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3787
codon start: 1
product: hypothetical protein
translation: MSEASSSQYLDDIGQLTYEESTLSPIDAGFSPVGSKGQEKEVEQNIEIDSSPLSTVQSTGLTLSSIDKVTVNVRNLSLTVAPTDPASLLGRLLKVKSALGGGSKSEEDAESSTGTSLVETWHDNEKTIDSNAPDVLSGSRKKILQNISVDVPAGSMMAIIGGSGSGKTSLLNVMAYRMGSRNLHCEGSVTFNGNPNINHVRNAYVMQQDVLQPNLTCRETLVYAANLRLPSSTSRQQRADLVEEIILELGLKECANTLVGDTAHKGLSGGEKRRLSIGIQLLANPSVLFLDEPTTGLDANSAFLLVETCKKLVLKGRTIIMSIHQPRSDIFFLFDSVTILTRGQAVYSGSVRDVLPYIEQLGYNFPTHMNPADFLIDLSAIDTRTAEQEVKTKRVVNRLLAAWIANQRFGPVMQPDSVPPSSSAALAKAPLWREIAVLTKRSFIVSMRDPMGLVGLLLECVLMGTICGWIFFKLDGSISGIRSMEGLLYTSCAAQGYLILLYETYRLCGPDLRVFDREYNDGSVGPFGYLISRRLSKMFTEDLYVPLIYSVSNILF
SIO_010081: AWJ20_3787
subclass of: SO_0000673
so part of: AWJ20_3787
location: complement(267669..269339)
location: region:267669-269339:-1
so has part: feature:267669-269339:-1:exon

XP_018733470.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:267669-269339:-1:exon

AWJ20_3788
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: GPR1
locus tag: AWJ20_3788
so part of: sequence
location: <274120..>275625
location: region:274120-275625:1
so has part: feature:274120-275625:1:exon
subclass of: SO_0000010

30035847
type: Gene
SIO_000068: ncbigene

position:274120:1
position: 274120
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:275625:1
position: 275625
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:274120-275625:1:exon

AWJ20_3788
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: GPR1
locus tag: AWJ20_3788
product: Gpr1p
transcript id: XM_018880818.1
SIO_010081: AWJ20_3788
subclass of: SO_0000673
so part of: AWJ20_3788
location: <274120..>275625
location: region:274120-275625:1
so has part: feature:274120-275625:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:274120-275625:1:exon

AWJ20_3788
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: GPR1
locus tag: AWJ20_3788
inference: similar to AA sequence:KEGG_Orthology:K12762
note: Plasma membrane G protein coupled receptor (GPCR); interacts with the heterotrimeric G protein alpha subunit, Gpa2p, and with Plc1p; sensor that integrates nutritional signals with the modulation of cell fate via PKA and cAMP synthesis; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10655215]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9388468]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9524122]; GO_function: GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO_function: GO:0004930 - G-protein coupled receptor activity [Evidence IPI] [PMID 9388468]; GO_function: GO:0004930 - G-protein coupled receptor activity [Evidence IMP,IPI,ISS] [PMID 9524122]; GO_function: GO:0005536 - glucose binding [Evidence IMP] [PMID 15494315]; GO_function: GO:0004871 - signal transducer activity [Evidence IEA]; GO_process: GO:0007186 - G-protein coupled receptor signaling pathway [Evidence IEA]; GO_process: GO:0007186 - G-protein coupled receptor signaling pathway [Evidence IPI] [PMID 9388468]; GO_process: GO:0007186 - G-protein coupled receptor signaling pathway [Evidence IMP,IPI] [PMID 9524122]; GO_process: GO:0051594 - detection of glucose [Evidence IMP] [PMID 15494315]; GO_process: GO:0009731 - detection of sucrose stimulus [Evidence IMP] [PMID 15494315]; GO_process: GO:0010255 - glucose mediated signaling pathway [Evidence IGI,IMP] [PMID 10361302]; GO_process: GO:0010255 - glucose mediated signaling pathway [Evidence IMP] [PMID 15494315]; GO_process: GO:0010255 - glucose mediated signaling pathway [Evidence IMP] [PMID 9813141]; GO_process: GO:0009757 - hexose mediated signaling [Evidence IMP] [PMID 10655215]; GO_process: GO:0009757 - he…
codon start: 1
product: Gpr1p
translation: MSDYYDSDTSKVNNYSAYQALVLRWVSVSSSCLSIVFGLAALYFYTNMKTKVFRHHLILLLLLFDFGKAVVLLWYPARVLLVASAYDNINFCDVVGFFTSAFIEGADLAVLALAIHTALLIFKKYKGPEGGLYRYRYWVYALTIIIPLIMAALVFVEGRKSYRPYITWCYLPVRPLWYRLVLSWIPRYIIIVTIVSIYVAIYIYVKLQYREVVRNFSQSQSYVDKYDAKLVGKGIRPRFRRGWRMFKAGTLSFLSYFPGFAFLATSNENITDSPSQPIDVQANTIAEFQRASMADFQFRRSVIERQIRSIFVYPTAYVFLWLAPFALQCLQFRSDLTKSTVFWVNAIAAFMQPFNCVVDTIAFFIRETPWRNREERVFKKETGRKILRGLSIRRTDGCKWNSSRSPSSPSSDKPSRNTQESDLYTPDIKGGYDVVELQTRGRQYSNDDIMTGGSSSTNYSPKHTVYPPFPGNELVRSDNLDAESDADIDIFEFLKGPPPHP
SIO_010081: AWJ20_3788
subclass of: SO_0000673
so part of: AWJ20_3788
location: 274120..275625
location: region:274120-275625:1
so has part: feature:274120-275625:1:exon

XP_018733471.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:274120-275625:1:exon

AWJ20_3789
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RKM5
locus tag: AWJ20_3789
so part of: sequence
location: complement(<275748..>276599)
location: region:275748-276599:-1
so has part: feature:275748-276599:-1:exon
subclass of: SO_0000010

30035848
type: Gene
SIO_000068: ncbigene

position:275748:-1
position: 275748
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:276599:-1
position: 276599
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:275748-276599:-1:exon

AWJ20_3789
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RKM5
locus tag: AWJ20_3789
product: Rkm5p
transcript id: XM_018880819.1
SIO_010081: AWJ20_3789
subclass of: SO_0000673
so part of: AWJ20_3789
location: complement(<275748..>276599)
location: region:275748-276599:-1
so has part: feature:275748-276599:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:275748-276599:-1:exon

AWJ20_3789
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RKM5
locus tag: AWJ20_3789
note: Protein lysine methyltransferase; monomethylates Lys-46 of the ribosomal large subunit Rpl1a/Rpl1b; member of the seven beta-strand methyltransferase superfamily; orthologs only found among fungal species; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence ISM] [PMID 19351663]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IDA] [PMID 21460220]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0006479 - protein methylation [Evidence IDA] [PMID 21460220]
codon start: 1
product: Rkm5p
translation: MLTQDLEPVDEDSLYDHVYELIVSRAGSSQSELGLGYVSRTDLVEISVGDQELEIKQSLSMLNSSQESSTTGAVIWKVSPLFADWLLTETSLFNKTIVNSSQTVVELGTGVAGIVAATLGQKVGRYIATDQEHILKLLSYNIENNTASSKISSKKRVKAAAVPSQISVCEYDWEHLETFGNFKDGIEGLGSNGTIIACDTIYNDYLIPHFVNALLTVAKTMGPEHNIIIAQQLRTHEILEASLSQLLEAGFNVWSVPDELLSKKLRNGFAVHYLQLPLEDKSF
SIO_010081: AWJ20_3789
subclass of: SO_0000673
so part of: AWJ20_3789
location: complement(275748..276599)
location: region:275748-276599:-1
so has part: feature:275748-276599:-1:exon

XP_018733472.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:275748-276599:-1:exon

AWJ20_3790
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: HOM2
locus tag: AWJ20_3790
so part of: sequence
location: complement(<276882..>277388)
location: region:276882-277388:-1
so has part: feature:276882-277388:-1:exon
subclass of: SO_0000010

30035850
type: Gene
SIO_000068: ncbigene

position:276882:-1
position: 276882
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:277388:-1
position: 277388
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:276882-277388:-1:exon

AWJ20_3790
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: HOM2
locus tag: AWJ20_3790
product: aspartate-semialdehyde dehydrogenase
transcript id: XM_018880821.1
SIO_010081: AWJ20_3790
subclass of: SO_0000673
so part of: AWJ20_3790
location: complement(<276882..>277388)
location: region:276882-277388:-1
so has part: feature:276882-277388:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:276882-277388:-1:exon

AWJ20_3790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: HOM2
locus tag: AWJ20_3790
inference: similar to AA sequence:KEGG_Orthology:K00133
note: Aspartic beta semi-aldehyde dehydrogenase; catalyzes the second step in the common pathway for methionine and threonine biosynthesis; expression regulated by Gcn4p and the general control of amino acid synthesis; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0003942 - N-acetyl-gamma-glutamyl-phosphate reductase activity [Evidence IEA]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0004073 - aspartate-semialdehyde dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0004073 - aspartate-semialdehyde dehydrogenase activity [Evidence IDA] [PMID 4145650]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_function: GO:0046983 - protein dimerization activity [Evidence IEA]; GO_process: GO:0006531 - aspartate metabolic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IEA]; GO_process: GO:0009090 - homoserine biosynthetic process [Evidence IMP] [PMID 4380684]; GO_process: GO:0009097 - isoleucine biosynthetic process [Evidence IEA]; GO_process: GO:0009085 - lysine biosynthetic process [Evidence IEA]; GO_process: GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA,IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IMP] [PMID 4380684]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0009088 - threonine biosynthetic proce…
codon start: 1
product: aspartate-semialdehyde dehydrogenase
translation: MDILDNIIPYISGEEDKLETEPRKILGAVSSDKVSFSIIPENEMKISATTTRVPVTDGHTACVSIKFAKQPAPSIAEIEKVLSEYTCEAQQLGCHSAPAHAIDVLSQPNRPQPRLDRDRGNGYTVSVGRIRPDPVLDVKFVALSHNTVLGAAGSGILIAELLLAKNLL
SIO_010081: AWJ20_3790
subclass of: SO_0000673
so part of: AWJ20_3790
location: complement(276882..277388)
location: region:276882-277388:-1
so has part: feature:276882-277388:-1:exon

XP_018733473.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:276882-277388:-1:exon

AWJ20_3791
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: HOS4
locus tag: AWJ20_3791
so part of: sequence
location: <278542..>281805
location: region:278542-281805:1
so has part: feature:278542-281805:1:exon
subclass of: SO_0000010

30035851
type: Gene
SIO_000068: ncbigene

position:278542:1
position: 278542
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:281805:1
position: 281805
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:278542-281805:1:exon

AWJ20_3791
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: HOS4
locus tag: AWJ20_3791
product: Hos4p
transcript id: XM_018880822.1
SIO_010081: AWJ20_3791
subclass of: SO_0000673
so part of: AWJ20_3791
location: <278542..>281805
location: region:278542-281805:1
so has part: feature:278542-281805:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:278542-281805:1:exon

AWJ20_3791
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: HOS4
locus tag: AWJ20_3791
note: Subunit of the Set3 complex; complex is a meiotic-specific repressor of sporulation specific genes that contains deacetylase activity; potential Cdc28p substrate; GO_component: GO:0034967 - Set3 complex [Evidence IDA] [PMID 11711434]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0016575 - histone deacetylation [Evidence IDA] [PMID 11711434]; GO_process: GO:0045835 - negative regulation of meiosis [Evidence IPI] [PMID 11711434]
codon start: 1
product: Hos4p
translation: MASDNVASSDTGPVNDEGSTGSGNGNSTSPSGGGSNSGPPSSGWRFSASTASTKPGAVINKRTLAEYNSSLSTKNQATQAKQQTNQENLTEQKSESNKGHRETRENYDRKVGDDMENDDSTAETDDAHEADSSEAETVILEESKEPKRRNLSVVESGNGSNDSGVKIKIRKLSDASEGRSAHSKSNKPLKRLQKRIHVSDDDDDDEYSGDKDDSENENDNDDHEHRNEQRHNRQPFQRAGGASGTLSDSDDWNDPRGRVKSRSRDTSRNSSSSTAANANRKVKSVVTAKMRKDGRSHVKDTDDGKHSRSVSPAVRSGNHNVTASGLTMPVQPIRKDGSPIRDASGRLLLQKLCDKGDFERSKALIEMGVDVNDRDYAGNTALHDAALKGHLNIVELLLDNGAIIDIRSGISDLDTPLIDATSRGHVEVVKLLLSRGADPRIFNAQGKTALDFLSQDDEHFNTLESLLKEYSIKMRNKPRRGSDTGGAEDENNGGNGSAANNSAYDAALHATPGTFPDAYFEGRRGGGNYSDGGYSSSGSQSGHRQKHSHNNQVSHGHNNHHHHHNRSHSPSHTHNHGTGHHTTSGDADESSSLSHDEGSKSSSSHTRRRGGARSQSIRNDLLWMDLTTKTGREQVYRRAADGDLQYVGRSLEEGWQPDADCLVLAAKHGHTEVVGLLLAFGVSSDQLNDEGVTALHETVGRGHMDTIRLLLDSGADPCWVDAQGRSYLDLAKEALGSDDEETILIRDAVDKKKKIPGKKDQTSSSSSSSASNLIKSKSDVEKRRKVSDDHEIPPDRIKKRKLQKVEKIDKAEKAEKAEKSEKAKSRMESPARVKEEPSSDVRSRQLDEKAKAEAAESAARELRKQQEAAAEKKAREEAALAEKKRLEEIERERLKELERKRAEEAEIKRAEEAEKARQAREAERRAEEEKRRIQKEKERELARKREIIAAQKERERKEREFQMLKSLEEEENRRKEKIKREQELEAERLRQLQIEEERKKALEAEQELDRQRMLQLQQEAEARKNFPYAIRMATYGPKQLDEMMSFFPILVHSVVPDTSYFLDIQVSLLLGLPNVHQSCKLYVAVQT
SIO_010081: AWJ20_3791
subclass of: SO_0000673
so part of: AWJ20_3791
location: 278542..281805
location: region:278542-281805:1
so has part: feature:278542-281805:1:exon

XP_018733474.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:278542-281805:1:exon

AWJ20_3792
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3792
so part of: sequence
location: complement(<282424..>283662)
location: region:282424-283662:-1
so has part: feature:282424-283662:-1:exon
subclass of: SO_0000010

30035852
type: Gene
SIO_000068: ncbigene

position:282424:-1
position: 282424
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:283662:-1
position: 283662
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:282424-283662:-1:exon

AWJ20_3792
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3792
product: hypothetical protein
transcript id: XM_018880823.1
SIO_010081: AWJ20_3792
subclass of: SO_0000673
so part of: AWJ20_3792
location: complement(<282424..>283662)
location: region:282424-283662:-1
so has part: feature:282424-283662:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:282424-283662:-1:exon

AWJ20_3792
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3792
codon start: 1
product: hypothetical protein
translation: MANLQNSSSLESSMSGSFIVSSTASVATETYQRAAKLFLTKSFVDSLNTLEPLLADAKELRRTGQLSEKTWIKSWKLYFVLLDAAARQQEEASTRSPSSSSSSSSSSISGTNSVSSSWPKKVRLELVKKITDGSLWKQVENEFGGSLSSAPPDIVFGLTSLTIRHGTTNNSILSMVSESLELYLSSMSDLVQSFDDTYRHEYLKVLDLYILKVLPLRNEYDLAREMIESSQFYDSHVKEEKRRQLIKSEENLVKKKQKKEEEDSKRKQMEALREEAKRKHERLVQQQRQQQKQLQQQQQQQQQLEQKTSLEHQQSSVNSLSSSGLGPRRTASPTPPRSSNPVRSFDSLIFYWRRRATAIVQSAMVWKIIAFFIIIVLSVSNPLARERARRIVNNVWRKLSETARMGFKVSFV
SIO_010081: AWJ20_3792
subclass of: SO_0000673
so part of: AWJ20_3792
location: complement(282424..283662)
location: region:282424-283662:-1
so has part: feature:282424-283662:-1:exon

XP_018733475.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:282424-283662:-1:exon

AWJ20_3793
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: FBP26
locus tag: AWJ20_3793
so part of: sequence
location: <287753..>288880
location: region:287753-288880:1
so has part: feature:287753-288880:1:exon
subclass of: SO_0000010

30035853
type: Gene
SIO_000068: ncbigene

position:287753:1
position: 287753
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:288880:1
position: 288880
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:287753-288880:1:exon

AWJ20_3793
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: FBP26
locus tag: AWJ20_3793
product: Fbp26p
transcript id: XM_018880824.1
SIO_010081: AWJ20_3793
subclass of: SO_0000673
so part of: AWJ20_3793
location: <287753..>288880
location: region:287753-288880:1
so has part: feature:287753-288880:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:287753-288880:1:exon

AWJ20_3793
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: FBP26
locus tag: AWJ20_3793
inference: similar to AA sequence:KEGG_Orthology:K19029
note: Fructose-2,6-bisphosphatase, required for glucose metabolism; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003873 - 6-phosphofructo-2-kinase activity [Evidence IKR] [PMID 9032445]; GO_function: GO:0003873 - 6-phosphofructo-2-kinase activity [Evidence IKR] [PMID 9032446]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004331 - fructose-2,6-bisphosphate 2-phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004331 - fructose-2,6-bisphosphate 2-phosphatase activity [Evidence IMP] [PMID 1322693]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA,IEA]; GO_process: GO:0006003 - fructose 2,6-bisphosphate metabolic process [Evidence IEA]; GO_process: GO:0006000 - fructose metabolic process [Evidence IEA]; GO_process: GO:0006006 - glucose metabolic process [Evidence IMP] [PMID 1322693]; GO_process: GO:0008152 - metabolic process [Evidence IEA]
codon start: 1
product: Fbp26p
translation: MEAAQPSALFFDAHNEEGARLRRQAAIRAIEDMLKWFSEEDGVVGILDATNSTKQRRQWIQDLLVKQGIEPMFVESWCDDQELIMHNIMDVKTCSPDYTGQDPDEAAKDFMERIKKYEEVYETINDESLTYAKIINVNSQVIINRIQSYVQSRIVYYLMNLHIKRRCIYLSRHGESEFNLTGQLGGDSNLSPRGDLYAHKLPQLVKEAVGDQPLTVWTSTLKRTQQTARFLPYRQMQWKALDELDAGVCDGMTYEEIKQEYPEDFEARDANKFEYRYRGGESYRDVVARLEPIIMELERQENIMIVTHQAVLRCIYAYFMNVPQDRSPWMDVPLHTLIRLEPRPYSTLETRVPANIPAVSTYREKGSTVLAAPTK
SIO_010081: AWJ20_3793
subclass of: SO_0000673
so part of: AWJ20_3793
location: 287753..288880
location: region:287753-288880:1
so has part: feature:287753-288880:1:exon

XP_018733476.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:287753-288880:1:exon

AWJ20_3794
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SRS2
locus tag: AWJ20_3794
so part of: sequence
location: <289346..>291289
location: region:289346-291289:1
so has part: feature:289346-291289:1:exon
subclass of: SO_0000010

30035854
type: Gene
SIO_000068: ncbigene

position:289346:1
position: 289346
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:291289:1
position: 291289
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:289346-291289:1:exon

AWJ20_3794
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SRS2
locus tag: AWJ20_3794
product: DNA helicase SRS2
transcript id: XM_018880825.1
SIO_010081: AWJ20_3794
subclass of: SO_0000673
so part of: AWJ20_3794
location: <289346..>291289
location: region:289346-291289:1
so has part: feature:289346-291289:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:289346-291289:1:exon

AWJ20_3794
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SRS2
locus tag: AWJ20_3794
inference: similar to AA sequence:KEGG_Orthology:K03657
codon start: 1
product: DNA helicase SRS2
translation: MSEQDPGDASLAGGAIGYDLISGQALESKAWGIEEDLNDQQLRAVQLPVDANIQVIAGPGTGKTKTLVNRLLYILTEYNVPPEKVLVLTFTNRAIHIFRESLFKLAPAIAPQVEIHTFHSYCQSLISDHWEEVGLRPGWTVADDMDQEYILTEVIKETVGSHTTAREFRVLSNKLHTYKRSLLNKSAKRDSKLDEILTKYETRLAGCNMLDYDGILKLGYRLAEKYSKAPESDKNKYFSALLIDEFQDANLFQWDLTCLIAKGSASITIVGDPDQSIFSFQGASSNLLDIMKKQLSDVRTVVLTQNYRSSQEIVDAASAMIREDSHFLGDEQMPVGLFTGPKPIFKKSLDSTSETVWVANTIHHLTHKENVEPSSIAVLVRTNGRKDSVAAGLRQRGIEVAIYGPLSLLKSPYIRPLYSFLKFIQNFEQDIQLLYMLRNPNKILSPKQISEAQSFSRSRGLPLWEALQQNQLWLRQPTTRVNKSKKPHGPPDLDQFISVINKSADIIHSNVHDSESLVEGLQLVSQYLSWPTRYGDKAHVKQQELFDLITSIAPLLKDESTSLSSSLLAHTRLQDIAAKPGEVVVSTIHNAKGRLQHCLRRLGLRPRPRGSCFAGECWERRRNDSSAARGAAGSGAEPQPPEAPYRM
SIO_010081: AWJ20_3794
subclass of: SO_0000673
so part of: AWJ20_3794
location: 289346..291289
location: region:289346-291289:1
so has part: feature:289346-291289:1:exon

XP_018733477.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:289346-291289:1:exon

AWJ20_3795
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3795
so part of: sequence
location: complement(<291885..>292643)
location: region:291885-292643:-1
so has part: feature:291885-292643:-1:exon
subclass of: SO_0000010

30035855
type: Gene
SIO_000068: ncbigene

position:291885:-1
position: 291885
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:292643:-1
position: 292643
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:291885-292643:-1:exon

AWJ20_3795
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3795
product: hypothetical protein
transcript id: XM_018880826.1
SIO_010081: AWJ20_3795
subclass of: SO_0000673
so part of: AWJ20_3795
location: complement(<291885..>292643)
location: region:291885-292643:-1
so has part: feature:291885-292643:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:291885-292643:-1:exon

AWJ20_3795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3795
codon start: 1
product: hypothetical protein
translation: MSKVYFISGGNRGIGFGFVQELSQRKDVTVIASVRNAAKATELNAWIKEHPNIHTVNYDGNVDGSALEAAKEVESITGGKGIDVFIANAAISDAHYSVLDLPEKNWLEHYKINTLAPLLLFKAFYPLLKKKDTRQVIFISSDAGSIAATPKMSFSAYGQSKAALNYSTKELSFELEEEKFTIIALNPGPVLSDMGTFSREEMKKISVAFSHKHWDTAPSVKESVDELLLVIDKLTPADNGKFFHHDGTIYPW
SIO_010081: AWJ20_3795
subclass of: SO_0000673
so part of: AWJ20_3795
location: complement(291885..292643)
location: region:291885-292643:-1
so has part: feature:291885-292643:-1:exon

XP_018733478.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:291885-292643:-1:exon

AWJ20_3796
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: STL1
locus tag: AWJ20_3796
so part of: sequence
location: complement(<293054..>294529)
location: region:293054-294529:-1
so has part: feature:293054-294529:-1:exon
subclass of: SO_0000010

30035856
type: Gene
SIO_000068: ncbigene

position:293054:-1
position: 293054
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:294529:-1
position: 294529
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:293054-294529:-1:exon

AWJ20_3796
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: STL1
locus tag: AWJ20_3796
product: glucose-inactivated glycerol proton symporter STL1
transcript id: XM_018880827.1
SIO_010081: AWJ20_3796
subclass of: SO_0000673
so part of: AWJ20_3796
location: complement(<293054..>294529)
location: region:293054-294529:-1
so has part: feature:293054-294529:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:293054-294529:-1:exon

AWJ20_3796
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: STL1
locus tag: AWJ20_3796
codon start: 1
product: glucose-inactivated glycerol proton symporter STL1
translation: MFAIPWFDSNPEGFFKLKGSRLIWATAILSSLGFSMIGYGNALMGGIINEEPFKQRFDYPSSSEIGFITAIYGVGAFVGSILTSLVGDSFGRRKSIAIGAIVMILGSLVQSSAITLRSLSVGRFVSGTGLGFLNSTIPVLQNEVSPHGERGMYVAVYCTTLNVGILVAYWVNFSLRNLGSDKSWRLPILLQIFILAPILALTVLTCESPRWLLLKDRDSNALQVLANLENSEPDDPLVEDKFHSLKESVVWDTVDAEQSSFWQDFYNPNDIIATKRLWISLSVQIFQQLGGINVLIYYCPILFEDSIKLSSQTSSQLSVLLQIWLVVTSMVPWSLLDRVGRRPLILGGISGQGASMLMQAIFIYQLNIHGNSNDSEKSSLSIWAILSIVTLFTFEASFAIGMQASVWVYCSEILPLRLRGRGTSLATSANWATNSVLVHLAPVVLEKLNYASFLILAALNFTFLPVAYLAFCETKGLSLEQVDQLFLEHQD
SIO_010081: AWJ20_3796
subclass of: SO_0000673
so part of: AWJ20_3796
location: complement(293054..294529)
location: region:293054-294529:-1
so has part: feature:293054-294529:-1:exon

XP_018733479.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:293054-294529:-1:exon

AWJ20_3797
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MPS1
locus tag: AWJ20_3797
so part of: sequence
location: <296215..>298728
location: region:296215-298728:1
so has part: feature:296215-298728:1:exon
subclass of: SO_0000010

30035857
type: Gene
SIO_000068: ncbigene

position:296215:1
position: 296215
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:298728:1
position: 298728
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:296215-298728:1:exon

AWJ20_3797
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MPS1
locus tag: AWJ20_3797
product: serine/threonine/tyrosine protein kinase MPS1
transcript id: XM_018880828.1
SIO_010081: AWJ20_3797
subclass of: SO_0000673
so part of: AWJ20_3797
location: <296215..>298728
location: region:296215-298728:1
so has part: feature:296215-298728:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:296215-298728:1:exon

AWJ20_3797
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MPS1
locus tag: AWJ20_3797
inference: similar to AA sequence:KEGG_Orthology:K08866
codon start: 1
product: serine/threonine/tyrosine protein kinase MPS1
translation: MSVNDGEHHEGDDSVSSSDGSFMPPVLSDYANQLLFEDKERQSRLQYLQQQESYQDSRGANVGYQQSHHYNQGSVGLPNGDYSPVDKMVISPQVPKTSRRELSGSPHMNSSGGISSSSLGTSPLESSDKISNASTTPGIRPAATLFTRAPAADMTSLRTTTMRSKRFGSNAFNKRLGKPLNFKGLPSANPNTTSNSTSTAISSMAQLSVSSSTATSSNPASNTASMHQPLPATTTSFSAGTSSMSIPATSLATTTATRPANIYSSLSGVDEDRNPNLSPSTKRSTTRIRFAEEHQEIAHDSPRRSYLLRHSKSSDNNSQYHDSDIGEANSSVSSNSSKRDRRDWSSRATTPVGDTSRHSSSSKSDHSQYDANPQQGSLSQFRAQDERPVLQSISPNIPVNPGNRFGSKVPPPKLENWANVKTSSLFSSNELHEYHNNHHNHHEVQEPERPAPPVPTDRADRAARIERFEKAAEQQSVAQLHAAHNLGTDRPRQSSDRSKTKKNMMAINNRLYQRLELLGRGGSSKVYKVQSNEGKVFAVKKVTFEDVDESVISGFKGEIDLLQRLRNEDRVVKLVDYEMHDTSVYLVMECGEIDLAHVLSARLNSQLDISFVRFYATEMLRCVAAVHNQGIVHSDLKPANFLLVKGMLKIIDFGIANVVPDYTANIHRDTQIGTPNYMAPEALLDANQFGPGSGTETAAKFKVGKPSDVWSCGCIIYQMVYGKPPYAAYSGAQRMLAIMNPKVQIQYPKHGLGGVRVSRDAIETIRGCLHRDPAARMTVEEVLEGSFLNPQAVDRSFIRTLLEHAVQYGATRKEPILPREVDMLTDDIWKKIQLSNR
SIO_010081: AWJ20_3797
subclass of: SO_0000673
so part of: AWJ20_3797
location: 296215..298728
location: region:296215-298728:1
so has part: feature:296215-298728:1:exon

XP_018733480.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:296215-298728:1:exon

AWJ20_3798
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RAS2
locus tag: AWJ20_3798
so part of: sequence
location: <302689..>303480
location: region:302689-303480:1
so has part: feature:302689-303480:1:exon
subclass of: SO_0000010

30035858
type: Gene
SIO_000068: ncbigene

position:302689:1
position: 302689
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:303480:1
position: 303480
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:302689-303480:1:exon

AWJ20_3798
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RAS2
locus tag: AWJ20_3798
product: Ras family GTPase RAS2
transcript id: XM_018880829.1
SIO_010081: AWJ20_3798
subclass of: SO_0000673
so part of: AWJ20_3798
location: <302689..>303480
location: region:302689-303480:1
so has part: feature:302689-303480:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:302689-303480:1:exon

AWJ20_3798
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RAS2
locus tag: AWJ20_3798
inference: similar to AA sequence:KEGG_Orthology:K07827
note: GTP-binding protein; regulates nitrogen starvation response, sporulation, and filamentous growth; farnesylation and palmitoylation required for activity and localization to plasma membrane; homolog of mammalian Ras proto-oncogenes; RAS2 has a paralog, RAS1, that arose from the whole genome duplication; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 22575457]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 22575457]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23127800]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 11914276]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 20162532]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 23127800]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IDA] [PMID 6438624]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 8106517]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0007190 - activation of adenylate cyclase activity [Evidence IDA] [PMID 8106517]; GO_process: GO:0030437 - ascospore formation [Evidence IMP] [PMID 2558958]; GO_process: GO:0045762 - positive regulation of adenylate cyclase activity [Evidence IGI] [PMID 2981630]; GO_process: GO:0045762 - positive regulation of adenylate cyclase activity [Evidence IGI] [PMID 3891097]; GO_process: GO:0000411 - positive regulation of transcription by galactose [Evidence IMP] [PMID 16292676]; GO_process: GO:0097271 - protein localization to bud neck [Evidence IGI] [PMID 12782684]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 1547504]; GO_process: GO:0032880 - regulation of protein localization [Evid…
codon start: 1
product: Ras family GTPase RAS2
translation: MSRRESNPLYKLIVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVMIDDQPATLEVLDTAGQEEYTALRDQWIRDGEGFILVYSITSRSSFSRIKNYYSQIERVKDEDPFAIVLVGNKSDRKGERQVSEQDGEQLARELGDNVAFFESSAKLNINIEKAFFECARKCRVIRHPETNPQGGPNSNNNLADVHSGYVDQGLGHGGNALGNQSSQNAGQNQKAPANQAHNRPSHNAGTSSQSHGRSDTRKAQKKKSKCIVM
SIO_010081: AWJ20_3798
subclass of: SO_0000673
so part of: AWJ20_3798
location: 302689..303480
location: region:302689-303480:1
so has part: feature:302689-303480:1:exon

XP_018733481.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:302689-303480:1:exon

AWJ20_3799
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: YHK8
locus tag: AWJ20_3799
so part of: sequence
location: complement(<306722..>308389)
location: region:306722-308389:-1
so has part: feature:306722-308389:-1:exon
subclass of: SO_0000010

30035859
type: Gene
SIO_000068: ncbigene

position:306722:-1
position: 306722
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:308389:-1
position: 308389
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:306722-308389:-1:exon

AWJ20_3799
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: YHK8
locus tag: AWJ20_3799
product: Yhk8p
transcript id: XM_018880830.1
SIO_010081: AWJ20_3799
subclass of: SO_0000673
so part of: AWJ20_3799
location: complement(<306722..>308389)
location: region:306722-308389:-1
so has part: feature:306722-308389:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:306722-308389:-1:exon

AWJ20_3799
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: YHK8
locus tag: AWJ20_3799
note: Presumed antiporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; expression of gene is up-regulated in cells exhibiting reduced susceptibility to azoles; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 9046086]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015893 - drug transport [Evidence IEP] [PMID 12697649]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]
codon start: 1
product: Yhk8p
translation: MAEPESGIRRSRSNSFSHHESSGPTASSPTLSMNSSNPDLMSKKVFNEDPEKQRDLKTDDDDVEAAPKPLTDDTTAENPVIPFDSTTPTHDPNCVYWDGLQDKENARRMSFARKWFICIILTSTAGCLTALSSAWTSAVDPMVERFHSSAEVGDLGLTLFLFGLGIGPLIAAPLSEKFGRQPVYLISLFLFFVFQFPTAFAHNMASALVGRYLCALGGSAFMSNVPGTFSDLFEKHQLALPVTVFTFGPFLGPGIGPVISGPITQHVGYRWVFYVFLIWTFVLLVTIALTVPETYPPILLAKKAKRLRKETGNDAIYAPIEKSERSFWRSLRHSCSMPVILISHEPVLDILCFYTGFLLAIIYLFFVAFPYVFTKVYHFQVEFVGLSFTGIIVGMALAASTYPFWRHFYEKELAKNGGVANPEMRLPQMCFGAVIIPIGLFMFAWTAYAEVHWIVPMVASGIFAFGSYFTFNGIITYTVETYHRYAASATAANVFIRCAIAGSAPLFGVQMLEGMGIHWGISLLGFVAVLLCPSAFIFRIYGKTLRMKSKYAIKV
SIO_010081: AWJ20_3799
subclass of: SO_0000673
so part of: AWJ20_3799
location: complement(306722..308389)
location: region:306722-308389:-1
so has part: feature:306722-308389:-1:exon

XP_018733482.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:306722-308389:-1:exon

AWJ20_3800
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ESS1
locus tag: AWJ20_3800
so part of: sequence
location: complement(<311367..>311768)
location: region:311367-311768:-1
so has part: feature:311367-311768:-1:exon
subclass of: SO_0000010

30035862
type: Gene
SIO_000068: ncbigene

position:311367:-1
position: 311367
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:311768:-1
position: 311768
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:311367-311768:-1:exon

AWJ20_3800
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ESS1
locus tag: AWJ20_3800
product: peptidylprolyl isomerase ESS1
transcript id: XM_018880832.1
SIO_010081: AWJ20_3800
subclass of: SO_0000673
so part of: AWJ20_3800
location: complement(<311367..>311768)
location: region:311367-311768:-1
so has part: feature:311367-311768:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:311367-311768:-1:exon

AWJ20_3800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ESS1
locus tag: AWJ20_3800
inference: similar to AA sequence:KEGG_Orthology:K09578
note: Peptidylprolyl-cis/trans-isomerase (PPIase); specific for phosphorylated serine and threonine residues N-terminal to proline; regulates phosphorylation of the RNAP II large subunit (Rpo21p) C-terminal domain (CTD); associates with phospho-Ser5 form of RNAP II in vivo; regulates phosphorylation of Ser7 within CTD; present along entire coding length of genes; represses initiation of CUTs; required for efficient termination of mRNA transcription and trimethylation of histone H3; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 10531363]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 10899126]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 10899127]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 11708797]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 14704159]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IPI] [PMID 10531363]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IPI] [PMID 10899126]; GO_function: GO:0016853 - isomerase activity [Evidence IEA,IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA,IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IDA,IMP] [PMID 15728580]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IDA] [PMID 9867817]; GO_process: GO:0080182 - histone H3-K4 trimethylation [Evidence IGI,IMP] [PMID 22778132]; GO_process: GO:0031064 - negative regulation of histone deacetylation [Evidence IMP,IPI] [PMID 10899127]; GO_process: GO:2000059 - negative regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 19597489]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 14704159]; GO_process: GO:0045899 - positive regulation of…
codon start: 1
product: peptidylprolyl isomerase ESS1
translation: MAKNYSQNASGAAAAQGASGDSEKIRASHLLVKHKDSRRPSSWKEANISRTKEEALSIILAHEARIRSGAATLSELAVSESDCSSARRGGDLGYFGRGEMQKEFEDAAFALKPGELSRVVETSSGLHLIERTG
SIO_010081: AWJ20_3800
subclass of: SO_0000673
so part of: AWJ20_3800
location: complement(311367..311768)
location: region:311367-311768:-1
so has part: feature:311367-311768:-1:exon

XP_018733483.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:311367-311768:-1:exon

AWJ20_3801
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3801
so part of: sequence
location: <313836..>314834
location: region:313836-314834:1
so has part: feature:313836-314834:1:exon
subclass of: SO_0000010

30035863
type: Gene
SIO_000068: ncbigene

position:313836:1
position: 313836
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:314834:1
position: 314834
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:313836-314834:1:exon

AWJ20_3801
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3801
product: hypothetical protein
transcript id: XM_018880833.1
SIO_010081: AWJ20_3801
subclass of: SO_0000673
so part of: AWJ20_3801
location: <313836..>314834
location: region:313836-314834:1
so has part: feature:313836-314834:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:313836-314834:1:exon

AWJ20_3801
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3801
codon start: 1
product: hypothetical protein
translation: MAPHLLVYAGTSYDKDQLVKVPVNKGDDASYIELDCPHAVDGVVRLAIRIKNFKDVRSSKHDPPEQEEIEEAVVVEEGSETDPKASVKDMSRSSSTSSNASNSSRTSTSSRLKNYLKKKKSRSPSPSPADSPYFEQENHKQDQLSIQFSIRFADPVAGDNLLFGNDFDEPIRDILPYGFSLGYKMFQWYIDPSVEGDPMADKPYLYGRALTSINAIHENDSPDIKWDGYVNGDKFLNPGSAPEKVKQMSSSERMTYFRDKSHRQSFDFVANNLYTFDFFTPYLTLGDSFGVQLPGFKFDVGKYCGGQPLRYVLKNLLDDSIYLVVVFSLVNE
SIO_010081: AWJ20_3801
subclass of: SO_0000673
so part of: AWJ20_3801
location: 313836..314834
location: region:313836-314834:1
so has part: feature:313836-314834:1:exon

XP_018733484.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:313836-314834:1:exon

AWJ20_3802
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3802
so part of: sequence
location: <315717..>316349
location: region:315717-316349:1
so has part: feature:315717-316349:1:exon
subclass of: SO_0000010

30035864
type: Gene
SIO_000068: ncbigene

position:315717:1
position: 315717
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:316349:1
position: 316349
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:315717-316349:1:exon

AWJ20_3802
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3802
product: hypothetical protein
transcript id: XM_018880834.1
SIO_010081: AWJ20_3802
subclass of: SO_0000673
so part of: AWJ20_3802
location: <315717..>316349
location: region:315717-316349:1
so has part: feature:315717-316349:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:315717-316349:1:exon

AWJ20_3802
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3802
codon start: 1
product: hypothetical protein
translation: MEIREREVEALKDRESAARKEATALSDGVVVWKDTCETVSDLERRLSLLPKQDRSDVKKISTMLNETLARLTRNLDVSEDNKWSLLSVAISQEVEALKQGIELVESMSAPPSSTSSSKVNSPPTAVSRILPKISHQVPNTALSSLEEPSKSHIIVPTPKTSPSPSFTNAVTGLNINNVSAEPISSSPTQSSTNAFNSVAQLLGNYETKTD
SIO_010081: AWJ20_3802
subclass of: SO_0000673
so part of: AWJ20_3802
location: 315717..316349
location: region:315717-316349:1
so has part: feature:315717-316349:1:exon

XP_018733485.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:315717-316349:1:exon

AWJ20_3803
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3803
so part of: sequence
location: complement(<316646..>319810)
location: region:316646-319810:-1
so has part: feature:316646-319810:-1:exon
subclass of: SO_0000010

30035865
type: Gene
SIO_000068: ncbigene

position:316646:-1
position: 316646
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:319810:-1
position: 319810
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:316646-319810:-1:exon

AWJ20_3803
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3803
product: hypothetical protein
transcript id: XM_018880835.1
SIO_010081: AWJ20_3803
subclass of: SO_0000673
so part of: AWJ20_3803
location: complement(<316646..>319810)
location: region:316646-319810:-1
so has part: feature:316646-319810:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:316646-319810:-1:exon

AWJ20_3803
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3803
codon start: 1
product: hypothetical protein
translation: MSDSNPPPLPAGAGDTSSAPVDIEAQLKALLAGLGQDADGDKNADNNTNFSTGEHESEEQSEDAATEAARKLIENALYSESSNLEAGVHPTADEQRETEPVEEPQQVDPVSDSTRPSASADMESLLLEQTLAEVQKALADDQGLSGQDSESQPETNVRSTQDIESSKTVQDSHIAIADQEPDTKENDEQNTDVDQGSLNALIQNALTALDDQPERERQDNQDDVPQAPKPLHEEPTVLEHPSSKEQTQHDTFSSDSGASRPSGEPDQAALASAIANALAGVGTRADDTDGSVTETSLQDQIAAAVASVSQEILPVHEDTNQHDTAAITEALVSSLSGEGANHNQEPDVLHIQQELQRILANDVSQQVSADTESHPQQASQTEANEDGEPEFDADAAAASVAEALAKALQQGAGDIDGESGNASAEETELAAQKALMEQLSSALREESAGHIQGQTGDEQHSVEGVDVQAMAELLSGSDLESTLSSILSGMNDPPQQEEPPRSNLSIAETLAISRSNIEKSREKLAKRIDPMLNRRGYLQSWSVRRQQHQQQQQRQHQEQPRQTIQPQQDADIDPLLQFSSETLPSQEEQSSDQIESGDGAEVPADSMLAALLLAKQMIGDEEATSEGQDLSLNEDAMEAVQQALQALSKSIQEEGASGTTTENNLTSDSTTAGNTPIFSSLDQFRTTRKYKPRRYRANAVLTPEDKERIRMDNRERKKRWRSNNNIRNKDNDLRARLHRRATNMFGPEDSPEKKSWFDKEFQKRREKRMLREMQLDPDFQRDDENSNGFVNINSNNNANGNSSSAESLRAALEILGKTEGLNEGLAQTVDSLVKDPQLLKTLMGDLFGNEESNNVSNNTSTATNYTFQPHANVNKPIAGGGIMSTFKIRKTESQPRAVQSRPPTAQPQFPSKYPDRGLTTLVRRAMKSRGRNTGGFQQPSQSTQPSVPRVLTNVPPLPNMSAPDPVAAIAGALSMRADNFSDVQQLSQPPQSLKRKPSLETISVTVSPKPPTYFGKPASRPSSVLQPAKKFKTMDNRAKAFGFPPLLSAMSTKR
SIO_010081: AWJ20_3803
subclass of: SO_0000673
so part of: AWJ20_3803
location: complement(316646..319810)
location: region:316646-319810:-1
so has part: feature:316646-319810:-1:exon

XP_018733486.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:316646-319810:-1:exon

AWJ20_3804
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3804
so part of: sequence
location: complement(<320293..>320403)
location: region:320293-320403:-1
so has part: feature:320293-320403:-1:exon
subclass of: SO_0000663

30035866
type: Gene
SIO_000068: ncbigene

position:320293:-1
position: 320293
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:320403:-1
position: 320403
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:320293-320403:-1:exon

AWJ20_3804
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_3804
product: tRNA-Leu
SIO_010081: AWJ20_3804
subclass of: SO_0000673
so part of: AWJ20_3804
location: complement(<320293..>320403)
location: region:320293-320403:-1
so has part: feature:320293-320403:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:320293-320403:-1:exon

AWJ20_3805
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3805
so part of: sequence
location: <321912..>323276
location: region:321912-323276:1
so has part: feature:321912-323276:1:exon
subclass of: SO_0000010

30035867
type: Gene
SIO_000068: ncbigene

position:321912:1
position: 321912
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:323276:1
position: 323276
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:321912-323276:1:exon

AWJ20_3805
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3805
product: hypothetical protein
transcript id: XM_018880836.1
SIO_010081: AWJ20_3805
subclass of: SO_0000673
so part of: AWJ20_3805
location: <321912..>323276
location: region:321912-323276:1
so has part: feature:321912-323276:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:321912-323276:1:exon

AWJ20_3805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3805
inference: similar to AA sequence:KEGG_Orthology:K13099
codon start: 1
product: hypothetical protein
translation: MVSNSATFDKRNPLQLRDVDEDDEIDPNDQEAALLRQDIEGSRPKSKRNAVKLDYDSDSSDDGASRRNKVHKQKKKTQKSSENKDGDSGSDDDMFSDNDNDDLKEADAIDSDTERRESKKKAKFLDMDKFEKQEELEDLPENSDSDPDDSGSDVNEANVDIDYFVNAGSPTTTDNAVLDSKPNKVKNAKKTEPKMESFHLRTDLEEGNFDQDGNFIRNAMDTNAHQDAWLDGLSKHDIKVARQAHQYREKHNVEHGGVDDEESTKFVPKCDVIAALLSYLQTGESPLDALQRLNSAAPKKRLGRKSASHAPLKGDIKTDAKESIRIQAIESISENSNKLLQEFGLTDIYDKTREELLRQYQKETGEVYVDLKRKRSESSLDGDDDTNDRGVDGTSTQSSLWEFRWDESDEIHGPYTSEQMASWVEYNYFDERVSVRQVSQGPLDFVPYDQVTFL
SIO_010081: AWJ20_3805
subclass of: SO_0000673
so part of: AWJ20_3805
location: 321912..323276
location: region:321912-323276:1
so has part: feature:321912-323276:1:exon

XP_018733487.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:321912-323276:1:exon

AWJ20_3806
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3806
so part of: sequence
location: <323630..>324391
location: region:323630-324391:1
so has part: feature:323630-324391:1:exon
subclass of: SO_0000010

30035868
type: Gene
SIO_000068: ncbigene

position:323630:1
position: 323630
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:324391:1
position: 324391
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:323630-324391:1:exon

AWJ20_3806
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3806
product: hypothetical protein
transcript id: XM_018880837.1
SIO_010081: AWJ20_3806
subclass of: SO_0000673
so part of: AWJ20_3806
location: <323630..>324391
location: region:323630-324391:1
so has part: feature:323630-324391:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:323630-324391:1:exon

AWJ20_3806
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3806
inference: similar to AA sequence:KEGG_Orthology:K05019
codon start: 1
product: hypothetical protein
translation: MPFAIQTIQSAPLDSEFTPLQEHQSYTPASFSLEENPILYLKSTAAKIETSKPLPQVPNATVITGDIYISSSYLTIWIPDHSVGVTIPYQCITLHAIQSGGESVYLQIESEGLVEGNPSFDDAPIMELTISLEKENDPTIRDLYNALSECSSLHLDVSEGDEEDIDGFEGMGEGDDGWITAESLISGQGDDDVSLDASKENGHGPAAALEVAVADAESVRAGQRRGREENEDEEVDAEEESVEAEESKWRRTN
SIO_010081: AWJ20_3806
subclass of: SO_0000673
so part of: AWJ20_3806
location: 323630..324391
location: region:323630-324391:1
so has part: feature:323630-324391:1:exon

XP_018733488.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:323630-324391:1:exon

AWJ20_3807
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CMP2
locus tag: AWJ20_3807
so part of: sequence
location: complement(<327407..>329305)
location: region:327407-329305:-1
so has part: feature:327407-329305:-1:exon
subclass of: SO_0000010

30035869
type: Gene
SIO_000068: ncbigene

position:327407:-1
position: 327407
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:329305:-1
position: 329305
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:327407-329305:-1:exon

AWJ20_3807
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CMP2
locus tag: AWJ20_3807
product: calcineurin catalytic subunit A
transcript id: XM_018880838.1
SIO_010081: AWJ20_3807
subclass of: SO_0000673
so part of: AWJ20_3807
location: complement(<327407..>329305)
location: region:327407-329305:-1
so has part: feature:327407-329305:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:327407-329305:-1:exon

AWJ20_3807
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CMP2
locus tag: AWJ20_3807
inference: similar to AA sequence:KEGG_Orthology:K04348
note: Calcineurin A; one isoform (the other is Cna1p) of the catalytic subunit of calcineurin, a Ca++/calmodulin-regulated protein phosphatase which regulates Crz1p (a stress-response transcription factor), the other calcineurin subunit is CNB1; regulates the function of Aly1p alpha-arrestin; CMP2 has a paralog, CNA1, that arose from the whole genome duplication; GO_component: GO:0005955 - calcineurin complex [Evidence IPI] [PMID 10887154]; GO_component: GO:0005955 - calcineurin complex [Evidence IDA] [PMID 1321337]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004723 - calcium-dependent protein serine/threonine phosphatase activity [Evidence IDA] [PMID 1321337]; GO_function: GO:0005516 - calmodulin binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_process: GO:0000754 - adaptation of signaling pathway by response to pheromone involved in conjugation with cellular fusion [Evidence IMP] [PMID 1651503]; GO_process: GO:0006873 - cellular ion homeostasis [Evidence IMP] [PMID 8798496]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]
codon start: 1
product: calcineurin catalytic subunit A
translation: MSDERAKKLENAIKAFQEKKPLPKVDFSVYKGDDGKELRTDERVIKTTPAPATKIPTDDELFLPGTSNPRLPNLAFLKDHLFREGRLHEEQAIYIINSATKIIMEEPTLLEIDPPVTLCGDIHGQYYDLMKLFEVGGDPRNTKYLFLGDYVDRGYFSIECVLYLWALKLHYPKSVFFLRGNHECRHLTDYFTFKLECKHKYSLNIYEACMMSFCTLPLAAVVNKQFFCVHGGLSPELHTLDDVRKLDRFREPPTHGLMCDLLWADPIENFGEEDNNRSFIHNNVRGCSYFYTYKAACDFLVKNNLLSIIRAHEAQNAGYRAYLESRNTGFPSVMTIFSAPNYLDTYNNKAAVVKYENNVLNIRQFKHSPHPYWLPNFMDVFTWSLPFVGEKITDMLISILNICTREELEEDTVRYIQEKGNTSKYGGIFGRKSPRSPRSPRSPSSPRSPRSPTSPRSPKKPIAGQTQQYDSDEDLPVKIPEEVEPEEDYFQDAQSTAMDRDDDDLDQEDDEDEDDLEVRRDRFKNKILAIGRLSRMFQVLRQESESVSEFKATTGTMLPAGTLMSGAEGIRKAITTFDEARRVDLINEQLPPTADEKAQENERQRKEALNRAMKEADADVKIRNLARRLTGE
SIO_010081: AWJ20_3807
subclass of: SO_0000673
so part of: AWJ20_3807
location: complement(327407..329305)
location: region:327407-329305:-1
so has part: feature:327407-329305:-1:exon

XP_018733489.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:327407-329305:-1:exon

AWJ20_3808
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TSR2
locus tag: AWJ20_3808
so part of: sequence
location: <330504..>331115
location: region:330504-331115:1
so has part: feature:330504-331115:1:exon
subclass of: SO_0000010

30035870
type: Gene
SIO_000068: ncbigene

position:330504:1
position: 330504
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:331115:1
position: 331115
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:330504-331115:1:exon

AWJ20_3808
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TSR2
locus tag: AWJ20_3808
product: Tsr2p
transcript id: XM_018880839.1
SIO_010081: AWJ20_3808
subclass of: SO_0000673
so part of: AWJ20_3808
location: <330504..>331115
location: region:330504-331115:1
so has part: feature:330504-331115:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:330504-331115:1:exon

AWJ20_3808
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TSR2
locus tag: AWJ20_3808
inference: similar to AA sequence:KEGG_Orthology:K14800
note: Protein with a potential role in pre-rRNA processing; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12837249]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]
codon start: 1
product: Tsr2p
translation: MSEPLASVQGEGANLVLSDPKHQSRFELGVCMAVYQWDNLQTAVDNQWGGADSEDKRDWMVGSVVELFETSNYVDSDDIEDRLLGIMEDEFGVSIEDNTATPVAVSIIQLYKECAEGNFSHVDELYAKYQEKESKRKAGLLPVNKVQTEGSDEEDEDEEEGDDDEEMNDAPASSSSSDPSEPQGPIVDEDGFELVQKKGNRRR
SIO_010081: AWJ20_3808
subclass of: SO_0000673
so part of: AWJ20_3808
location: 330504..331115
location: region:330504-331115:1
so has part: feature:330504-331115:1:exon

XP_018733490.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:330504-331115:1:exon

AWJ20_3809
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3809
so part of: sequence
location: complement(<331283..>333655)
location: region:331283-333655:-1
so has part: feature:331283-333655:-1:exon
subclass of: SO_0000010

30035871
type: Gene
SIO_000068: ncbigene

position:331283:-1
position: 331283
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:333655:-1
position: 333655
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:331283-333655:-1:exon

AWJ20_3809
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3809
product: hypothetical protein
transcript id: XM_018880840.1
SIO_010081: AWJ20_3809
subclass of: SO_0000673
so part of: AWJ20_3809
location: complement(<331283..>333655)
location: region:331283-333655:-1
so has part: feature:331283-333655:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:331283-333655:-1:exon

AWJ20_3809
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3809
codon start: 1
product: hypothetical protein
translation: MGNTDSKLRFRTHISRLFELDNISADDRYYWVKYWTEPNSVFDVFTLLSSADIRKTRDGNLANLETLIKVVYFRLKELRNSRSFPHNDIAPAKELLNCVRILTKILPFVYEKDTDEIREWEEKVFWQTTSDKTSDTSHLQGIAPDLINITLDLLFIEGFTIPIGQANSSIWEPGVGSNTVQQPTHEMLSNRVEILRFLLTLVSDCLYQNQVDVAVKGSKYLTYVVTNPDKRVVMTVLCSLLNTSLRYSPAGKVPYDHMLISDRNRQLVIYSVQLLVVLLVYPIPEVPDFSIGSSSRLIPKSGSGRKQDINMYRYFLSKIRHPEDFQFIIDNLLKLISQPILLTSSLLPGSQTEVQWVTELLALFWELTQCNRKFRDYLYSGSATDFMIFLLAYVQEKYQDASQREVVRLSAYILLYLSSDSAFVKLLRYKVEVSSGSDDINGNLRRKYISSKSKMSIFSGTYGDYLINQLLHPLLSSGSNNDPMFDFLAPTFMEIIYNISPFTINISYSTASNLVQLFSNLISSNYIITASIKEFLLLNILKVFSNLIHFNFRSNKNLLFVILKNESKFRFLHNSTKDGDSDGPFVIEDEDGGIDGPSEASSSKSKGKQPVKAASSTPMVSAKDSSSRVSDLWTLVEPIIMIVEDLRRQIPYTEYISTTNTQETKVQPHIIIDSIGNIPSVRGVDLDQHEPADFEPIRFNWNSISLGWYESIIWGDIFRNESQLILSTINEVATSLVSPRIGSVGVWNGTNIKLFRLQEAARQGPSLLRPKGAVDAVAESVLQQFGKLTH
SIO_010081: AWJ20_3809
subclass of: SO_0000673
so part of: AWJ20_3809
location: complement(331283..333655)
location: region:331283-333655:-1
so has part: feature:331283-333655:-1:exon

XP_018733491.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:331283-333655:-1:exon

AWJ20_3810
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3810
so part of: sequence
location: complement(<334250..>334331)
location: region:334250-334331:-1
so has part: feature:334250-334331:-1:exon
subclass of: SO_0000663

30035873
type: Gene
SIO_000068: ncbigene

position:334250:-1
position: 334250
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:334331:-1
position: 334331
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:334250-334331:-1:exon

AWJ20_3810
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_3810
product: tRNA-Ser
SIO_010081: AWJ20_3810
subclass of: SO_0000673
so part of: AWJ20_3810
location: complement(<334250..>334331)
location: region:334250-334331:-1
so has part: feature:334250-334331:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:334250-334331:-1:exon

AWJ20_3811
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CDA1
locus tag: AWJ20_3811
so part of: sequence
location: <334574..>335491
location: region:334574-335491:1
so has part: feature:334574-335491:1:exon
subclass of: SO_0000010

30035874
type: Gene
SIO_000068: ncbigene

position:334574:1
position: 334574
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:335491:1
position: 335491
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:334574-335491:1:exon

AWJ20_3811
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CDA1
locus tag: AWJ20_3811
product: chitin deacetylase CDA1
transcript id: XM_018880842.1
SIO_010081: AWJ20_3811
subclass of: SO_0000673
so part of: AWJ20_3811
location: <334574..>335491
location: region:334574-335491:1
so has part: feature:334574-335491:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:334574-335491:1:exon

AWJ20_3811
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CDA1
locus tag: AWJ20_3811
inference: similar to AA sequence:KEGG_Orthology:K01452
note: Chitin deacetylase; together with Cda2p involved in the biosynthesis ascospore wall component, chitosan; required for proper rigidity of the ascospore wall; GO_component: GO:0005631 - chitosan layer of spore wall [Evidence ISS] [PMID 8940152]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004099 - chitin deacetylase activity [Evidence IEA]; GO_function: GO:0004099 - chitin deacetylase activity [Evidence IDA,ISS] [PMID 8940152]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IDA,IMP] [PMID 8940152]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA,IEA]; GO_process: GO:0006032 - chitin catabolic process [Evidence IEA]; GO_process: GO:0000272 - polysaccharide catabolic process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]
codon start: 1
product: chitin deacetylase CDA1
translation: MTRLAFFVLIAITASAADITTARAAAAVVAVNSPLQAPLAPSPSDPFPLWLQELTGQTRWPGETPPYIPMPNIDLSQVPNEIPRRDLGVCQGIERSHCSFDCYRCVAVDDISTCPTLSQTFDDGPSMHTPKLLMELEYKTTFFTQGINVVRYPDIFRQQHMAGHLLATHTWSHAHLPGLSNEDIVAQLQWSIWAMNATAGIVPKYFRPPYGAIDDRVRSISRQFGLVAVFWDRDSYDWRLNDDSKLVEEVVKDIVSWKQESQGGLILEHDSTVKTVNAGINVSRMLGPSQLTVAECINSNWYQNQ
SIO_010081: AWJ20_3811
subclass of: SO_0000673
so part of: AWJ20_3811
location: 334574..335491
location: region:334574-335491:1
so has part: feature:334574-335491:1:exon

XP_018733492.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:334574-335491:1:exon

AWJ20_3812
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TMT1
locus tag: AWJ20_3812
so part of: sequence
location: <337686..>339938
location: region:337686-339938:1
so has part: feature:337686-339938:1:exon
subclass of: SO_0000010

30035875
type: Gene
SIO_000068: ncbigene

position:337686:1
position: 337686
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:339938:1
position: 339938
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:337686-339938:1:exon

AWJ20_3812
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TMT1
locus tag: AWJ20_3812
product: Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
transcript id: XM_018880843.1
SIO_010081: AWJ20_3812
subclass of: SO_0000673
so part of: AWJ20_3812
location: <337686..>339938
location: region:337686-339938:1
so has part: feature:337686-339938:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:337686-339938:1:exon

AWJ20_3812
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TMT1
locus tag: AWJ20_3812
inference: similar to AA sequence:KEGG_Orthology:K13621
codon start: 1
product: Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
translation: MSSMLTLILPAAAVLALALIITNPSAKAVAQFAWNCFLKPIGHVGSDQKSALESFYKGQAKIYDTTRKKLLKGRHTMLSLSVSHLKKSKDIVWIDFGGGTGWNIEKMNEVVPITSFKEIHLVDLSPSLCEVAQNRFAARGWSNVHVHCIDATTFQLPNKETRADLITLSYSLSMIPSYYSMIDRICQLVHSDSIFAVVDFYVQSNATLNGKATSVGGVLLRHVNWLSRTFWRLWFEFDRVYLDSSRRDYLEYRFGTIKSLNMRNKSLGGIPYYIWIGCDKDRSQDFMYRLNALATESPYLAPSNASSDALANQEQIQIRSKGYEATVINMEHNLPYPSFYYQSEVWRIYYDAENPHYHQFNNQYIYAFTWEDPREDINLLNLGPSDVVLAITSAGDNILTYAAMENPPKRIHGVDLNPHQNHLMELKLASLRCLPFEDVWKIFGDGKHEDFMKILVTKLSPHLSSHALQFWIKNGKKYLDPKTKGLYDSGSTRWAIRIARWLFFALGLESDVKRLLKTQTIKEQLKVWNESIRPALFNPIFCKLILGNPVFLWKALGVPVNQANMIEGGILQYIVDTIDPLISRSLISDDNYFYHLCLTGSYSPKNCPDYITKKGYFNLAKRKGALDTIRLHTDTINDVSDRLAPGTLTVAIIMDHMDWFEPTGTLAVEEIQALNKSLAKGGRVMLRSSSKTPWYIKTFESQGFSCKSAATRFSGTSIDRVNMYASTWICTKLYNTAEKERSGSIKPLEL
SIO_010081: AWJ20_3812
subclass of: SO_0000673
so part of: AWJ20_3812
location: 337686..339938
location: region:337686-339938:1
so has part: feature:337686-339938:1:exon

XP_018733493.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:337686-339938:1:exon

AWJ20_3813
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3813
so part of: sequence
location: <341366..>342292
location: region:341366-342292:1
so has part: feature:341366-342292:1:exon
subclass of: SO_0000010

30035876
type: Gene
SIO_000068: ncbigene

position:341366:1
position: 341366
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:342292:1
position: 342292
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:341366-342292:1:exon

AWJ20_3813
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3813
product: hypothetical protein
transcript id: XM_018880844.1
SIO_010081: AWJ20_3813
subclass of: SO_0000673
so part of: AWJ20_3813
location: <341366..>342292
location: region:341366-342292:1
so has part: feature:341366-342292:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:341366-342292:1:exon

AWJ20_3813
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3813
codon start: 1
product: hypothetical protein
translation: MDSRITEVQVSLHDDTVSVVSPKEITSRDIAKVLDKEGFDVIVTDVSEDPEESHHGSSSIWLPSRIRYWQKSRAHLEKCDQCRISKASSESSRSSLKKALHYFEKEKDITDGSSVIHEEDEDMVVVMDASSDATQFRAIYSIGDMTCAACTTAISTTVKEQMPELLDIGVDLINKSAVALVPNKQVALKIQEIINDIGYTCELVELTPVESNKSWRLTASISGMSCMSCVNAIKDQVGPLPYLQEADISLLTNSGTFTINDLKMADELKEKIQDMGYDYDLIEVNEVDYAKNKTSRTVNLSIKGMFCE
SIO_010081: AWJ20_3813
subclass of: SO_0000673
so part of: AWJ20_3813
location: 341366..342292
location: region:341366-342292:1
so has part: feature:341366-342292:1:exon

XP_018733494.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:341366-342292:1:exon

AWJ20_3814
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CCC2
locus tag: AWJ20_3814
so part of: sequence
location: <342657..>344816
location: region:342657-344816:1
so has part: feature:342657-344816:1:exon
subclass of: SO_0000010

30035877
type: Gene
SIO_000068: ncbigene

position:342657:1
position: 342657
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:344816:1
position: 344816
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:342657-344816:1:exon

AWJ20_3814
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CCC2
locus tag: AWJ20_3814
product: Cu(2+)-transporting P-type ATPase CCC2
transcript id: XM_018880845.1
SIO_010081: AWJ20_3814
subclass of: SO_0000673
so part of: AWJ20_3814
location: <342657..>344816
location: region:342657-344816:1
so has part: feature:342657-344816:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:342657-344816:1:exon

AWJ20_3814
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CCC2
locus tag: AWJ20_3814
note: Cu(+2)-transporting P-type ATPase; required for export of copper from the cytosol into an extracytosolic compartment; has similarity to human proteins involved in Menkes and Wilsons diseases; protein abundance increases in response to DNA replication stress; affects TBSV model (+)RNA virus replication by regulating copper metabolism; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0012510 - trans-Golgi network transport vesicle membrane [Evidence IDA] [PMID 9325307]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IDA] [PMID 15078884]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IMP] [PMID 7708696]; GO_function: GO:0005507 - copper ion binding [Evidence IEA]; GO_function: GO:0005507 - copper ion binding [Evidence IDA] [PMID 17961510]; GO_function: GO:0043682 - copper-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IMP] [PMID 7708696]; GO_process: GO:0060003 - copper ion export [Evidence IMP] [PMID 7708696]; GO_process: GO:0006825 - copper ion transport [Evidence IEA,IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0030001 - metal ion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 7708696]; GO_process: …
codon start: 1
product: Cu(2+)-transporting P-type ATPase CCC2
translation: MDLVPKGSKLRTYFEQPIWAGGVSRSTWALLFLSTPVYFFAADLFHTKALKEIWSLWRGGASWKRRLFRFGSMNLLMSLGITIAYFASIALLILSATSQPKEVMGYTSTYFDSVVFLAFFLLMGRCIDAYSKAQTASAVSMLGNLRPDTVNVIEPEQGQTVLSDYLHNESKAVSIDMVEVGDYVKVLPGERCSVDGIIVDGQSTFDESTLTGESRPVKHGVGEEIFAGTINTGTGAVVARIKAIEEGSLLNSIVSIVREGQLHRAPIERVAEKITGIFVPVVTLIAVLTWVIWLALGLSGSLPQRYLDIDVGGWTVWSLQFAISVFVVACPCGIGLAAPTALFVGSGLAAKYGILARGGGEAFQEGSNIDIICFDKTGTLTEGGEPKITDHHFTGTISLELLQIANTMEGASTHPLGIAVRNFVQITLEEAKNDTVALYSPAVKKIEEIPGMGLEAEIDGPEIAKVLLGNERLLEKYNSKVDDETNDLMNKWKAQGKSVILVATSKDRNNFEIRLVMGAADAVRPESKEVIEALTSRGIECWMISGDNEITAKAVAAQVSIRPENVIAGVLPAEKSDKVTWLQKSGNSKRTPGGARAIVAMVGDGVNDAPSLSIADVGIAIGSGSDLALTSAKFVLLKSDLYSLLNLLDISRVVFRRVKFNFAWALIYNLIGIPVAAGVIYPYHNSRLSPAWASLAMALSSVSVVTSSLLLKLYRPKGQ
SIO_010081: AWJ20_3814
subclass of: SO_0000673
so part of: AWJ20_3814
location: 342657..344816
location: region:342657-344816:1
so has part: feature:342657-344816:1:exon

XP_018733495.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:342657-344816:1:exon

AWJ20_3815
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: GPM1
locus tag: AWJ20_3815
so part of: sequence
location: complement(<345007..>345756)
location: region:345007-345756:-1
so has part: feature:345007-345756:-1:exon
subclass of: SO_0000010

30035878
type: Gene
SIO_000068: ncbigene

position:345007:-1
position: 345007
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:345756:-1
position: 345756
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:345007-345756:-1:exon

AWJ20_3815
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: GPM1
locus tag: AWJ20_3815
product: phosphoglycerate mutase GPM1
transcript id: XM_018880846.1
SIO_010081: AWJ20_3815
subclass of: SO_0000673
so part of: AWJ20_3815
location: complement(<345007..>345756)
location: region:345007-345756:-1
so has part: feature:345007-345756:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:345007-345756:-1:exon

AWJ20_3815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: GPM1
locus tag: AWJ20_3815
inference: similar to AA sequence:KEGG_Orthology:K01834
note: Tetrameric phosphoglycerate mutase; mediates the conversion of 3-phosphoglycerate to 2-phosphoglycerate during glycolysis and the reverse reaction during gluconeogenesis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 3332961]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16962558]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016868 - intramolecular transferase activity, phosphotransferases [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0004619 - phosphoglycerate mutase activity [Evidence IEA]; GO_function: GO:0004619 - phosphoglycerate mutase activity [Evidence IDA] [PMID 1386023]; GO_function: GO:0004619 - phosphoglycerate mutase activity [Evidence IMP] [PMID 3033435]; GO_process: GO:0006094 - gluconeogenesis [Evidence IMP] [PMID 3033435]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IMP] [PMID 11015729]; GO_process: GO:0008152 - metabolic process [Evidence IEA]
codon start: 1
product: phosphoglycerate mutase GPM1
translation: MSTHKLILVRHGQSDWNEKNLFTGWVDVKLSEVGIKEATRAGELLKESGLKPDILYTSKLSRAIQTANIALDNADRLFIDVKRNWRLNERHYGALQGKDKAQTLAQYGKEQFMTWRRSFDVPPPPIADDSEFSQAHDERYKDVPKEDLPKTESLELVIKRLLPYWQSDISKDLLAGKTVIVVAHGNSLRALVKHLDNISDEDIAGLNIPTGIPLVYELDDNLKPVKKAEYLDPEAAEAGAAAVAAQGSK
SIO_010081: AWJ20_3815
subclass of: SO_0000673
so part of: AWJ20_3815
location: complement(345007..345756)
location: region:345007-345756:-1
so has part: feature:345007-345756:-1:exon

XP_018733496.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:345007-345756:-1:exon

AWJ20_3816
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: YPT1
locus tag: AWJ20_3816
so part of: sequence
location: <349711..>350178
location: region:349711-350178:1
so has part: feature:349711-350178:1:exon
subclass of: SO_0000010

30035879
type: Gene
SIO_000068: ncbigene

position:349711:1
position: 349711
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:350178:1
position: 350178
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:349711-350178:1:exon

AWJ20_3816
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: YPT1
locus tag: AWJ20_3816
product: Rab family GTPase YPT1
transcript id: XM_018880847.1
SIO_010081: AWJ20_3816
subclass of: SO_0000673
so part of: AWJ20_3816
location: <349711..>350178
location: region:349711-350178:1
so has part: feature:349711-350178:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:349711-350178:1:exon

AWJ20_3816
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: YPT1
locus tag: AWJ20_3816
note: Rab family GTPase; involved in the ER-to-Golgi step of the secretory pathway; complex formation with the Rab escort protein Mrs6p is required for prenylation of Ypt1p by protein geranylgeranyltransferase type II (Bet2p-Bet4p); binds to unspliced HAC1 mRNA; regulates unfolded protein response (UPR) by promoting the decay of HAC1 RNA; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 10747087]; GO_component: GO:0005795 - Golgi stack [Evidence IDA] [PMID 12802060]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IDA] [PMID 23129774]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 10747087]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 20375281]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 20059749]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 3311726]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 9447979]; GO_function: GO:0000149 - SNARE binding [Evidence IDA,IPI] [PMID 18388317]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0090114 - COPII-coated vesicle budding [Evidence IMP] [PMID 15689495]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 20375281]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 15689495]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [P…
codon start: 1
product: Rab family GTPase YPT1
translation: MKLQIWDTAGQEHFRAVTRSYFRNAAGCILVYDVTRRQTFDQVSMWLNDIREQAHEEINICLVGNKSDLEDQRQVPYEEAKQWADSNGISHFLETSAKTGDNVLEAYTSVAQSIHSKIVGGRYNLQDKGHGVKANNSGLINLNVDASTKRKGGCC
SIO_010081: AWJ20_3816
subclass of: SO_0000673
so part of: AWJ20_3816
location: 349711..350178
location: region:349711-350178:1
so has part: feature:349711-350178:1:exon

XP_018733497.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:349711-350178:1:exon

AWJ20_3817
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PUF6
locus tag: AWJ20_3817
so part of: sequence
location: <350571..>352538
location: region:350571-352538:1
so has part: feature:350571-352538:1:exon
subclass of: SO_0000010

30035880
type: Gene
SIO_000068: ncbigene

position:350571:1
position: 350571
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:352538:1
position: 352538
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:350571-352538:1:exon

AWJ20_3817
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PUF6
locus tag: AWJ20_3817
product: Puf6p
transcript id: XM_018880848.1
SIO_010081: AWJ20_3817
subclass of: SO_0000673
so part of: AWJ20_3817
location: <350571..>352538
location: region:350571-352538:1
so has part: feature:350571-352538:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:350571-352538:1:exon

AWJ20_3817
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PUF6
locus tag: AWJ20_3817
inference: similar to AA sequence:KEGG_Orthology:K14844
note: Pumilio-homology domain protein; binds the 3' UTR of ASH1 mRNA and represses its translation, resulting in proper asymmetric localization of ASH1 mRNA; required at post-transcriptional step for efficient retrotransposition; absence results in decreased Ty1 Gag:GFP protein levels; co-sediments with the 60S ribosomal subunit and is required for its biogenesis; GO_component: GO:0005934 - cellular bud tip [Evidence IEA]; GO_component: GO:0015934 - large ribosomal subunit [Evidence IDA] [PMID 19806183]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003730 - mRNA 3'-UTR binding [Evidence IDA] [PMID 15198983]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0000900 - translation repressor activity, nucleic acid binding [Evidence IDA] [PMID 15198983]; GO_process: GO:0017148 - negative regulation of translation [Evidence IDA] [PMID 15198983]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 19806183]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Puf6p
translation: MGKTAVKLSTKRKAVAVESRKPVTNGKLKKAKKEEEVVEESEENEDDFASSDDESINLSSDDSDEDELDKDDDEEDELDQDEEVDEEGNGSEDGEEDEEGLADDGSKTARSKEQRAEQKKLQQERKLQRSGGVEIQQIKNIWERLRVKTGVPTEVRKKLVDQAWELCHDKVKELVFKHDASRVVQTIFKYADKEKRLAITKALKGSYVELAKSSYGKYLLVKLLHYGSSDVRDGVLSEMHGSFRKLIKHKEGAYVIEDAYRDYSTAAHKSQIISEFYGSEFAIFKDIAKDKSLEDIIKENPDKRPYLMKNLNEVITSAVNKGSIGFTIIHAAMLEYVKNIDATGSEREVFIDLITEQFAEIVHTNEGSQVACRVLSIATAKERKGLVRSLKPFASKLASDEYGYLVLIALFRSVDDTVLVSKSFTADLKENINSLIVSKTGRRAFLYLLLGLSPRYFTPTIIKKFNQLDELKAATSKKDDEVRRTELLKAFSPLFFEAISANTRTILKESLGAQFVAEALLYGIGEDDRQKALESVASAFGDSSPDADNGTHLIHEPFSTRLLRTLVQDGHWDAKEKRANVVSSPTNFKALLLTKVLEFPAEWATGDGSFVVVSLVENLESADKATLVKVLKKHKKAITAASADNKGAKLLVEHL
SIO_010081: AWJ20_3817
subclass of: SO_0000673
so part of: AWJ20_3817
location: 350571..352538
location: region:350571-352538:1
so has part: feature:350571-352538:1:exon

XP_018733498.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:350571-352538:1:exon

AWJ20_3818
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: HAP3
locus tag: AWJ20_3818
so part of: sequence
location: complement(<352859..>353602)
location: region:352859-353602:-1
so has part: feature:352859-353602:-1:exon
subclass of: SO_0000010

30035881
type: Gene
SIO_000068: ncbigene

position:352859:-1
position: 352859
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:353602:-1
position: 353602
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:352859-353602:-1:exon

AWJ20_3818
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: HAP3
locus tag: AWJ20_3818
product: Hap3p
transcript id: XM_018880849.1
SIO_010081: AWJ20_3818
subclass of: SO_0000673
so part of: AWJ20_3818
location: complement(<352859..>353602)
location: region:352859-353602:-1
so has part: feature:352859-353602:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:352859-353602:-1:exon

AWJ20_3818
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: HAP3
locus tag: AWJ20_3818
note: Subunit of the Hap2p/3p/4p/5p CCAAT-binding complex; complex is heme-activated and glucose-repressed; complex is a transcriptional activator and global regulator of respiratory gene expression; contains sequences contributing to both complex assembly and DNA binding; GO_component: GO:0016602 - CCAAT-binding factor complex [Evidence IDA,IPI] [PMID 2832951]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 7828851]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IDA] [PMID 2832951]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_process: GO:0000436 - carbon catabolite activation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 2832951]; GO_process: GO:0043457 - regulation of cellular respiration [Evidence IMP] [PMID 2182199]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]
codon start: 1
product: Hap3p
translation: MDKSPPDSSKNFELREQDKWLPIANVSRIMKNALPESAKVSKEAKECVQECVSEFVSFITSEASEKCSAEKRKTVNGEDILFAMTSLGFENYAEVLKIYLAKYREFQVLKQEREGDRKPSGGSGAGLGRLGNGGSSVSVGLDEDEDDDMDSGSGGVVMDNASESLAADGAVAEMLNTDGEHDQEHAEIKVEGQSGDGSEGAVATTADTYTNYDDSTYTTNDHAPAATDDPSIYEDYGQYTNVDMNQF
SIO_010081: AWJ20_3818
subclass of: SO_0000673
so part of: AWJ20_3818
location: complement(352859..353602)
location: region:352859-353602:-1
so has part: feature:352859-353602:-1:exon

XP_018733499.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:352859-353602:-1:exon

AWJ20_3819
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3819
so part of: sequence
location: complement(<354966..>356045)
location: region:354966-356045:-1
so has part: feature:354966-356045:-1:exon
subclass of: SO_0000010

30035882
type: Gene
SIO_000068: ncbigene

position:354966:-1
position: 354966
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:356045:-1
position: 356045
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:354966-356045:-1:exon

AWJ20_3819
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3819
product: hypothetical protein
transcript id: XM_018880850.1
SIO_010081: AWJ20_3819
subclass of: SO_0000673
so part of: AWJ20_3819
location: complement(<354966..>356045)
location: region:354966-356045:-1
so has part: feature:354966-356045:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:354966-356045:-1:exon

AWJ20_3819
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3819
codon start: 1
product: hypothetical protein
translation: MVGEAPKLELQSLEFEKRMVLLTYSLALMMLAETAVTSRYGDGNQDNDRKWKLATSHLIKSQSIVWYLVANSNSYKGQPIPPQLQNQTGFITGLQTLIGGSLHLLIIYKDLERELQESSDGYNSSSTTTTSRNLLSRVAIYAADKFGAASQLISSSSSSFSSSGGTGSDLSSSGSTEPTKSKMRSAMSRIAPSSHNGSSSSSSSSHNSSFSLGNSSDTLSGWLSEARKFCIADTYKLSAIDQAQKGQTGQAIGFLTAALELLGANSKLKKVVSSTAKPGTIQYQQDQLKQTILPILHSYTTENNNYTFQTIPKASELESNRPSGRQVVAAEQPWVPPSSLISDSVSETLTPSSSSRTYY
SIO_010081: AWJ20_3819
subclass of: SO_0000673
so part of: AWJ20_3819
location: complement(354966..356045)
location: region:354966-356045:-1
so has part: feature:354966-356045:-1:exon

XP_018733500.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:354966-356045:-1:exon

AWJ20_3820
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: VPS3
locus tag: AWJ20_3820
so part of: sequence
location: <357300..>360764
location: region:357300-360764:1
so has part: feature:357300-360764:1:exon
subclass of: SO_0000010

30035884
type: Gene
SIO_000068: ncbigene

position:357300:1
position: 357300
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:360764:1
position: 360764
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:357300-360764:1:exon

AWJ20_3820
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: VPS3
locus tag: AWJ20_3820
product: CORVET complex subunit VPS3
transcript id: XM_018880852.1
SIO_010081: AWJ20_3820
subclass of: SO_0000673
so part of: AWJ20_3820
location: <357300..>360764
location: region:357300-360764:1
so has part: feature:357300-360764:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:357300-360764:1:exon

AWJ20_3820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: VPS3
locus tag: AWJ20_3820
codon start: 1
product: CORVET complex subunit VPS3
translation: MESDPYIIASKQRTHSKKRRPVSQIVILPTISRALVLSQSTTSVFTLPEFAPCSNVGSMRDVNALSRDIDDFTVLNERGDSEFAEVTVFSKSAIRLVKVFGESLKLAGNIEYPGVLNGVRRSSYALVVNNESYDLLDLKHVRKVPLFPLRAAGEDEDQDSETREEDTYAQKQPGTTTETAGTEGETNASPTVEQSAETEPVGTTLTNKQVPEIAKEEGDDSKTGTEESKTITETSAQSTTEEVDKAKDELTEPGSEADKKSNVETDPTNTIKVEEDAGMEVSVDSTTEVTTEPSTQPAPEVKVGETATSEGSTTEPSTQVATELKIGGTATTEGSHIQRPRAGKGHAPAVSIHSIQSTGSVESAESKPSSSPVSTTSATFPSMEGVPTPTTEVEGSKSDHSATGKSKSKKHADPIKPIIVPVASDEFLVTSGTSAVDRAMGLVVNVDGEISRGTIAWSKYPSSVAVDYPYVAAVIDNQVQLHSLHDQKLVQTVEFPSKPLVTTVLAPYKTPYTVLVNKIVLAPLAVEDIKSPDVVSRMSSERDTACKISICSSTLFAYTPEAGVECLIPTPRFLSLEKLVLVNGQVDDVYDEIERMDFSTELAVTQLQYLNLLIGLYYLREANHTPSHFSDVTKTWLVASLDPRIMIFIFDKKNVKGEVWVFNGVISFIETLQKTYSSSMSKLSENVVSFLKTFYKDWFKKREMASLGLADKENVFKSLELSYLAFLLKCEEKSKASQHDLIHAIDNEIVLATDESIELLRQQKKFFYLSHMYNKLKMPSELLSCWKEMLLETNPAFANGETTMAEYLINECEDEGLVWDYGAWLVQTYPKTGIKVFTSPDLRVNINENQVVAVLKSMNNDEAWRQYLKFLVYEKNQTLFASDLATVMLLDIVDKISKNPDVRKSLMDNYDIYKALPVPKPAYIPFLRNKLQNSQPVVPTKSKGLLLKSTIAAPAASLSPFEEVMKMRLELMELVDSTSDFDYTSLMHLSQDEPDTLLIEQCVVFGHLGIHEQCLDILCNRLTDYKTAIDYCIYGRIPISMTILEPLDSQIQKDLFRQLFLRYLKVPDPGTRIACTRILLEQWGNRLDVSLVLSNLPDNWPVEVVSGYLSQFFKRTMADQNQASVDRSLARSENLFISQQLLELSKIAYTPSDI
SIO_010081: AWJ20_3820
subclass of: SO_0000673
so part of: AWJ20_3820
location: 357300..360764
location: region:357300-360764:1
so has part: feature:357300-360764:1:exon

XP_018733501.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:357300-360764:1:exon

AWJ20_3821
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3821
so part of: sequence
location: complement(<360932..>361576)
location: region:360932-361576:-1
so has part: feature:360932-361576:-1:exon
subclass of: SO_0000010

30035885
type: Gene
SIO_000068: ncbigene

position:360932:-1
position: 360932
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:361576:-1
position: 361576
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:360932-361576:-1:exon

AWJ20_3821
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3821
product: hypothetical protein
transcript id: XM_018880853.1
SIO_010081: AWJ20_3821
subclass of: SO_0000673
so part of: AWJ20_3821
location: complement(<360932..>361576)
location: region:360932-361576:-1
so has part: feature:360932-361576:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:360932-361576:-1:exon

AWJ20_3821
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3821
inference: similar to AA sequence:KEGG_Orthology:K03247
codon start: 1
product: hypothetical protein
translation: MFAYQAENADSVVLVYDTAKSNQGGLALRAYRLSNSYLNAKKDGKFTTENLVKNELSYSNIFQELPIDVKNSHLVTLYLHSAKEATENVKDYDDLAISVDQFLEQNIEGIFDSVDEFHYDQGNYNYYQRQLTREKLKIQQWQQKRKAENTALEQQGKPLLSTDDYKTLFRLPEEPSRLDNLLISAQINQYCTQIEEFGATVVPKLFATQKVLEG
SIO_010081: AWJ20_3821
subclass of: SO_0000673
so part of: AWJ20_3821
location: complement(360932..361576)
location: region:360932-361576:-1
so has part: feature:360932-361576:-1:exon

XP_018733502.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:360932-361576:-1:exon

AWJ20_3822
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PRP18
locus tag: AWJ20_3822
so part of: sequence
location: <362367..>363341
location: region:362367-363341:1
so has part: feature:362367-363341:1:exon
subclass of: SO_0000010

30035886
type: Gene
SIO_000068: ncbigene

position:362367:1
position: 362367
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:363341:1
position: 363341
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:362367-363341:1:exon

AWJ20_3822
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PRP18
locus tag: AWJ20_3822
product: Prp18p
transcript id: XM_018880854.1
SIO_010081: AWJ20_3822
subclass of: SO_0000673
so part of: AWJ20_3822
location: <362367..>363341
location: region:362367-363341:1
so has part: feature:362367-363341:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:362367-363341:1:exon

AWJ20_3822
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PRP18
locus tag: AWJ20_3822
inference: similar to AA sequence:KEGG_Orthology:K12817
note: Splicing factor and component of snRNP U5; factor involved in the positioning of the 3' splice site during the second catalytic step of splicing; interacts with Slu7p; GO_component: GO:0071021 - U2-type post-spliceosomal complex [Evidence IDA] [PMID 12212850]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 8474454]; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 8474454]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA,IEA]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IDA] [PMID 12212850]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IGI] [PMID 17626844]; GO_process: GO:0008380 - RNA splicing [Evidence IEA,IEA]; GO_process: GO:0000350 - generation of catalytic spliceosome for second transesterification step [Evidence IDA] [PMID 12212850]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 12403466]; GO_process: GO:0071048 - nuclear retention of unspliced pre-mRNA at the site of transcription [Evidence IGI,IMP] [PMID 14718167]
codon start: 1
product: Prp18p
translation: MDFSALLAKEIAKKKAQAAAVTNLKTESADGPGQKPKSYVRKAELEELREKEYRKEQEAKQAAARKRQLEQELEHEREKENEAKRLKRRGNDGSNSNKSETERSDSEIIARLEELNEPTSVPGESEKGRKNRLARIEKKLELQERLRKEEEEDARTDPTIVPQDIKDNEPKVYIQMRVYIKQLLRKWELYLEQNQEETKSIYKEASKDIEILLGHLRNKSLSKQIFPSLATLLYYLQTKKFRDANDTYIQLSIGNVAWPIGVIGVAIHERSAQSKITGIHNTSSEGSVQIAHIMSDDETRRWLTAVKRLITFCEKTSKTSSVTD
SIO_010081: AWJ20_3822
subclass of: SO_0000673
so part of: AWJ20_3822
location: 362367..363341
location: region:362367-363341:1
so has part: feature:362367-363341:1:exon

XP_018733503.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:362367-363341:1:exon

AWJ20_3823
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SGT1
locus tag: AWJ20_3823
so part of: sequence
location: complement(<363718..>364554)
location: region:363718-364554:-1
so has part: feature:363718-364554:-1:exon
subclass of: SO_0000010

30035887
type: Gene
SIO_000068: ncbigene

position:363718:-1
position: 363718
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:364554:-1
position: 364554
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:363718-364554:-1:exon

AWJ20_3823
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SGT1
locus tag: AWJ20_3823
product: Sgt1p
transcript id: XM_018880855.1
SIO_010081: AWJ20_3823
subclass of: SO_0000673
so part of: AWJ20_3823
location: complement(<363718..>364554)
location: region:363718-364554:-1
so has part: feature:363718-364554:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:363718-364554:-1:exon

AWJ20_3823
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SGT1
locus tag: AWJ20_3823
inference: similar to AA sequence:KEGG_Orthology:K12795
note: Cochaperone protein; regulates activity of adenylyl cyclase Cyr1p; involved in kinetochore complex assembly; associates with the SCF (Skp1p/Cdc53p/F box protein) ubiquitin ligase complex; acts as a linker between Skp1p and HSP90 complexes; protein abundance increases in response to DNA replication stress; GO_component: GO:0000151 - ubiquitin ligase complex [Evidence IDA] [PMID 10445024]; GO_function: GO:0051087 - chaperone binding [Evidence ISS] [PMID 12456005]; GO_function: GO:0051087 - chaperone binding [Evidence IDA] [PMID 16945921]; GO_function: GO:0030674 - protein binding, bridging [Evidence IDA] [PMID 16945921]; GO_process: GO:0019933 - cAMP-mediated signaling [Evidence IGI,IPI] [PMID 12456005]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051382 - kinetochore assembly [Evidence IDA] [PMID 10445024]; GO_process: GO:0006461 - protein complex assembly [Evidence IGI,ISS] [PMID 12456005]; GO_process: GO:0006461 - protein complex assembly [Evidence IDA] [PMID 15090617]; GO_process: GO:0016567 - protein ubiquitination [Evidence TAS] [PMID 12456005]; GO_process: GO:0051726 - regulation of cell cycle [Evidence TAS] [PMID 11847307]
codon start: 1
product: Sgt1p
translation: MKIQSHLKSVEDEDDLIVSIQDIPKIQDLSDDESGRKEVEKALDVQPEKQSGISVSTPEYPAPDTVRHDWFQMGNKCDVSIFIKNSPKEDVTVEFTESSATIKFPLASGQLYEYNIGPFSHEIEPSKSTCKVFSTKIELGIVKKVNTSWATLLSPEGERPLNNKVPLSLDEMRTALEKTAKDSSNSSSEASTTNSTRPLVPSFEKNWEKMAAEALGDEEQQPDDFFKQLYGNADDDTRKAMLKSYTESGGTTLSTNWEDVKKAPVPVSPPSGMEAKKF
SIO_010081: AWJ20_3823
subclass of: SO_0000673
so part of: AWJ20_3823
location: complement(363718..364554)
location: region:363718-364554:-1
so has part: feature:363718-364554:-1:exon

XP_018733504.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:363718-364554:-1:exon

AWJ20_3824
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: NOB1
locus tag: AWJ20_3824
so part of: sequence
location: <365586..>367052
location: region:365586-367052:1
so has part: feature:365586-367052:1:exon
subclass of: SO_0000010

30035888
type: Gene
SIO_000068: ncbigene

position:365586:1
position: 365586
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:367052:1
position: 367052
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:365586-367052:1:exon

AWJ20_3824
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: NOB1
locus tag: AWJ20_3824
product: Nob1p
transcript id: XM_018880856.1
SIO_010081: AWJ20_3824
subclass of: SO_0000673
so part of: AWJ20_3824
location: <365586..>367052
location: region:365586-367052:1
so has part: feature:365586-367052:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:365586-367052:1:exon

AWJ20_3824
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: NOB1
locus tag: AWJ20_3824
inference: similar to AA sequence:KEGG_Orthology:K11883
note: Protein involved in proteasomal and 40S ribosomal subunit biogenesis; required for cleavage of the 20S pre-rRNA to generate the mature 18S rRNA; cleavage is activated by Fun12p, a GTPase and translation initiation factor; relocalizes from nucleus to nucleolus upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12588997]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12502737]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12588997]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0030688 - preribosome, small subunit precursor [Evidence IDA] [PMID 12588997]; GO_function: GO:0004521 - endoribonuclease activity [Evidence IDA] [PMID 19801658]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0070181 - small ribosomal subunit rRNA binding [Evidence IDA] [PMID 19706509]; GO_process: GO:0030490 - maturation of SSU-rRNA [Evidence IDA] [PMID 19801658]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IEP,IMP] [PMID 12588997]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15388878]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0043248 - proteasome assembly [Evidence IMP,IPI] [PMID 12502737]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IDA] [PMID 12588997]; GO_process: GO:0042274 - ribosomal small subunit bio…
codon start: 1
product: Nob1p
translation: MASINSLILDAGPLLTQTFSDLHSRAEKFFTTPSVYNEIKDERARQNLLLWGEELVVRQPKPSSIAAVSEFSKKTGDYAVLSSTDMHILALCYELEVELNGGDWRLRKVPGQKNINGAKEVKHSETQKSESTDSSVSKVKESNEQTAEPVSDLTKTESKKESSETTATEPEANPEETEDDGWSVVAAKPRKQKKGKKRNDLWSKPAQVPVIPSEPTTTDSAQPESEVDNQQITEATATEESQPPAEENVETQDSFVEEIIEEDYDDEDADDWITTENLQETLEKAGGDKLEKVETKTMKAAMSTGDFAMQNVALQMGLNLVNPTNGKHIKRVKNYMLRCHACFKLTAFPKDGRPRQFCPRCGGATLLRCTVQVSDSGNIQVFLKKNMQWSSRGDKFSLPTPQSRNARKQRHESDPILLREDQKEYQKAVKDSMWKKRQNEKLLDEWIGTGSADSVGSPFAISGYKRDATKHTGVRVGRGRYVNDSKRK
SIO_010081: AWJ20_3824
subclass of: SO_0000673
so part of: AWJ20_3824
location: 365586..367052
location: region:365586-367052:1
so has part: feature:365586-367052:1:exon

XP_018733505.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:365586-367052:1:exon

AWJ20_3825
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RSR1
locus tag: AWJ20_3825
so part of: sequence
location: <371591..>372541
location: region:371591-372541:1
so has part: feature:371591-372541:1:exon
subclass of: SO_0000010

30035889
type: Gene
SIO_000068: ncbigene

position:371591:1
position: 371591
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:372541:1
position: 372541
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:371591-372541:1:exon

AWJ20_3825
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RSR1
locus tag: AWJ20_3825
product: Ras family GTPase RSR1
transcript id: XM_018880857.1
SIO_010081: AWJ20_3825
subclass of: SO_0000673
so part of: AWJ20_3825
location: <371591..>372541
location: region:371591-372541:1
so has part: feature:371591-372541:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:371591-372541:1:exon

AWJ20_3825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RSR1
locus tag: AWJ20_3825
inference: similar to AA sequence:KEGG_Orthology:K07836
note: GTP-binding protein of the Ras superfamily; required for bud site selection, morphological changes in response to mating pheromone, and efficient cell fusion; localized to the plasma membrane; significantly similar to mammalian Rap GTPases; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 15282802]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8723349]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 1910037]; GO_function: GO:0003924 - GTPase activity [Evidence TAS] [PMID 9759491]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004871 - signal transducer activity [Evidence TAS] [PMID 9891811]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0007120 - axial cellular bud site selection [Evidence TAS] [PMID 2065354]; GO_process: GO:0007120 - axial cellular bud site selection [Evidence TAS] [PMID 2690082]; GO_process: GO:0007121 - bipolar cellular bud site selection [Evidence TAS] [PMID 2065354]; GO_process: GO:0007121 - bipolar cellular bud site selection [Evidence TAS] [PMID 2690082]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0000282 - cellular bud site selection [Evidence TAS] [PMID 9759491]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence TAS] [PMID 9891811]
codon start: 1
product: Ras family GTPase RSR1
translation: MRDYKVVVLGAGGVGKSALTVQFVQGVYLESYDPTIEDSYRKQCLIDNRSCTLEILDSAGVEQFTAMRELYIKNGEGFILVYSVTNESSLQELLELREQVIRIKDNANVPIVLVGNKCDLMDDRVVPAKVGVQVADSWGKVPFYETSAKYRLNVEEVFVDLVRQIMRRDSGFGSSLGMRQGSIDESTKKYILGHGHNNSSNSHYYSSHGRQLSHNGSNNASSVALAAATHTASNSTSSTFSSRSNSHTQTHSAASLEGFDHAFLTTDPAAKSTRNKLLRHKPSNRKLSGKASTLSLRRNHANPASAGQKDKDCLIM
SIO_010081: AWJ20_3825
subclass of: SO_0000673
so part of: AWJ20_3825
location: 371591..372541
location: region:371591-372541:1
so has part: feature:371591-372541:1:exon

XP_018733506.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:371591-372541:1:exon

AWJ20_3826
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3826
so part of: sequence
location: complement(<373013..>374818)
location: region:373013-374818:-1
so has part: feature:373013-374818:-1:exon
subclass of: SO_0000010

30035890
type: Gene
SIO_000068: ncbigene

position:373013:-1
position: 373013
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:374818:-1
position: 374818
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:373013-374818:-1:exon

AWJ20_3826
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3826
product: methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor
transcript id: XM_018880858.1
SIO_010081: AWJ20_3826
subclass of: SO_0000673
so part of: AWJ20_3826
location: complement(<373013..>374818)
location: region:373013-374818:-1
so has part: feature:373013-374818:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:373013-374818:-1:exon

AWJ20_3826
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3826
inference: similar to AA sequence:KEGG_Orthology:K01969
codon start: 1
product: methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor
translation: MLQWSLRSISSLGHGVRSSSGLHFGLARCTSISGVHGVKIESRLASTASLFASKYQTESLQTLPTAISNTSPEFQEKAAAMNELISEIQAIHNHVTDVNEIPEKIRTKHLARKKLLPRDRIAALIDPGTSFMDLSLLAGHELYEGEDIRGGGIITGIGIVQGVKCLIIANDSTVKGGTYYPITVRKHLRAQEIAQENHMPCIYLSDSGGANLPHQSDVFPAHNHFGHIFYQQSRMSSMGIPQLALVLGPCTAGGAYVPAMSDESIIVRGTGHIFLAGPPLVKAATGEVVSAEDLGGGEMHASVSGVVDYLAETEEEGIALLRQSVGNLNWPKVETLASSAQPEKTIDEPLYPPEELGGVVGTNLKVAYNVREVIARIVDGSRFSEFKKKYGTSLVCGWSEIWGHKVGILANNGPLFSDSSLKGAHFIQLCKQRDIPLVFLQNISGFMVGSDAERGGIAKNGAKLVNAVVGAGVEKYTVIIGGSYGAGNYGMCGRAYKPRFLWSWPNARTAVMGAEQLASVMDSVGSASNKAKSDALRDRIERESLVKFGSARLWDDGVILPQQTRQYLGQALEIRAQSRVVQATRFAQKAAAPHDFGIWRM
SIO_010081: AWJ20_3826
subclass of: SO_0000673
so part of: AWJ20_3826
location: complement(373013..374818)
location: region:373013-374818:-1
so has part: feature:373013-374818:-1:exon

XP_018733507.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:373013-374818:-1:exon

AWJ20_3827
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3827
so part of: sequence
location: <375670..>376845
location: region:375670-376845:1
so has part: feature:375670-376845:1:exon
subclass of: SO_0000010

30035891
type: Gene
SIO_000068: ncbigene

position:375670:1
position: 375670
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:376845:1
position: 376845
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:375670-376845:1:exon

AWJ20_3827
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3827
product: isovaleryl-CoA dehydrogenase, mitochondrial precursor
transcript id: XM_018880859.1
SIO_010081: AWJ20_3827
subclass of: SO_0000673
so part of: AWJ20_3827
location: <375670..>376845
location: region:375670-376845:1
so has part: feature:375670-376845:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:375670-376845:1:exon

AWJ20_3827
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3827
inference: similar to AA sequence:KEGG_Orthology:K00253
note: Fungal Genetics Stock Center 12071
codon start: 1
product: isovaleryl-CoA dehydrogenase, mitochondrial precursor
translation: MSSRAYSAAAALDVEELREATIAFCKEEITREVAAATDSNNSFPNELWPKLGEAGLLGITASPEYGGLGQGYLAHSVVIEELSRASGSIALSYAAHSNLCINQLTLHTTPEQGAKYLPDLISGKKIGALAMSEAGSGSDVVSMKTTATLSDDGSGYYLNGTKMWITNGPDADTLVVYAKTDPKAGSKGITTFIVEKGMPGFSCTRKLDKLGMRGSNTGELVFDNVFIPKENVLGKVGGGVYVLMSGLDLERLVLAAGPVGLMKAALDETLPYVHTRLQFGQPIAHNQLIQGKLADMYTKYATARAFLYETARAADAGHKDTKDCAAVILYAAERATEVCLDAIQCLGGMGYVNETVPGRLLRDAKLYEIGAGTSEIRRMVIGRAFNKEYRQ
SIO_010081: AWJ20_3827
subclass of: SO_0000673
so part of: AWJ20_3827
location: 375670..376845
location: region:375670-376845:1
so has part: feature:375670-376845:1:exon

XP_018733508.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:375670-376845:1:exon

AWJ20_3828
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: OSH2
locus tag: AWJ20_3828
so part of: sequence
location: <380125..>383535
location: region:380125-383535:1
so has part: feature:380125-383535:1:exon
subclass of: SO_0000010

30035892
type: Gene
SIO_000068: ncbigene

position:380125:1
position: 380125
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:383535:1
position: 383535
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:380125-383535:1:exon

AWJ20_3828
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: OSH2
locus tag: AWJ20_3828
product: oxysterol-binding protein related protein OSH2
transcript id: XM_018880860.1
SIO_010081: AWJ20_3828
subclass of: SO_0000673
so part of: AWJ20_3828
location: <380125..>383535
location: region:380125-383535:1
so has part: feature:380125-383535:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:380125-383535:1:exon

AWJ20_3828
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: OSH2
locus tag: AWJ20_3828
note: Member of an oxysterol-binding protein family with seven members; in S. cerevisiae, family members have overlapping, redundant functions in sterol metabolism and collectively perform a function essential for viability; OSH2 has a paralog, SWH1, that arose from the whole genome duplication; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11408574]; GO_component: GO:0032541 - cortical endoplasmic reticulum [Evidence IDA] [PMID 20008566]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 12727870]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 11408574]; GO_function: GO:0005545 - 1-phosphatidylinositol binding [Evidence ISS] [PMID 11238399]; GO_function: GO:0008289 - lipid binding [Evidence IEA]; GO_function: GO:0008289 - lipid binding [Evidence IDA] [PMID 20008566]; GO_function: GO:0008142 - oxysterol binding [Evidence ISS] [PMID 11238399]; GO_function: GO:0015248 - sterol transporter activity [Evidence IDA] [PMID 20008566]; GO_process: GO:0035621 - ER to Golgi ceramide transport [Evidence IMP] [PMID 24213531]; GO_process: GO:0006897 - endocytosis [Evidence IGI] [PMID 15173322]; GO_process: GO:0006887 - exocytosis [Evidence IGI] [PMID 17004323]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0030011 - maintenance of cell polarity [Evidence IGI] [PMID 17004323]; GO_process: GO:0015918 - sterol transport [Evidence IGI] [PMID 16585271]; GO_process: GO:0015918 - sterol transport [Evidence IDA] [PMID 20008566]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: oxysterol-binding protein related protein OSH2
translation: MYGRQEIALLLLNQPQINDTIVNSKGKQPVELSKTPQIAEAMQIARAQYVEKVAFLLKKYLDEENTAALEELLSIPRASALLDINGQDPVTGGTVLHDFVRKKNKKMVEFILSHGGDPFKRDFKGVLPIEVTKDDTIKKMLKAAKKEQTVIIGNGDKAGGSGPGGAVAGGPRVSGESPNMKGYLKKWTNFTGGYKLRWFVLENGVLSYYKRQDDIQRACRGSVNLKEAKLHLDSSEKLRFEVVIRGSNSKFHLKGNHPVETNRWVWALQNAIQYAKDQDRLKNGSGTALSASSTGSTDLRRSGTSGSVSSARTNATTSTTATGVTRSGSAGAAARGDENSTLTVPNTSSGSSRISSSSRRSPSSSSHSRSHSASEMFASTNSKIISGTMNLHDDAESRGLGGIGLNSSTKLVDDILPEDEDVVDDDDDDYSEGLTDPESFDEEIGNGSGLKWGRFEDSITLEANAIRDLLTLIRAKNQKNIDNQPGGLTSKELDDSLSAMSASIETLESVAKQHAKQFNAQERYYQQKIDQAETKERLWAKNLRDLELEHQKIQGDLHSALQKRKEATKLLREAQSAQARVTSPSDNSGVSTTAAAAGSAMAGVVAGVGAGIAATTASSDEGSTSKTGDSVPPNPTITAAGQASKSDINRPTITSNEESDDSDDDDDEFFDTLPEVTDTLDEKGASLATIHESTSAETLAVESDLTSVQEKKKQLITGQDSFAGYEDGPRKRLKLDADDRPKISLWGVLKSLIGKDMTKMTLPVSFNECTNLLQRSAEDMEYTDILDRGAKIVDDPALRLAHVAAFAASSYSSTINRIAKPFNPLLGETFEYCRPDCGYRLFSEQVSHHPPIGALYAEAPKWDFYGASNVKSQFYGRSFDINPLGRWYLTLRPDAGAGVEEELYSFKKVTSSVVGIITGSPIVDNYGDMDIINHTLGYKCTVNFKPRGWSGKNAYELKGRIVSPSGKEEWIVGGRWNDKIIARRIVKGQESTGDGVKLPAGDSNAPTSSANINAILLWKVHDRPPAPFNLTAFAITLNDLPDKLARYIAPTDTRLRPDQRAMEEGRYDAAADEKKRVEEKQRAARRLREQSGVEYKPLWFKKDVHPVTGEEYYTPTRDYWQYRQNKSIKTIAPDIF
SIO_010081: AWJ20_3828
subclass of: SO_0000673
so part of: AWJ20_3828
location: 380125..383535
location: region:380125-383535:1
so has part: feature:380125-383535:1:exon

XP_018733509.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:380125-383535:1:exon

AWJ20_3829
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MEP3
locus tag: AWJ20_3829
so part of: sequence
location: <387080..>388555
location: region:387080-388555:1
so has part: feature:387080-388555:1:exon
subclass of: SO_0000010

30035893
type: Gene
SIO_000068: ncbigene

position:387080:1
position: 387080
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:388555:1
position: 388555
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:387080-388555:1:exon

AWJ20_3829
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MEP3
locus tag: AWJ20_3829
product: ammonium permease MEP3
transcript id: XM_018880861.1
SIO_010081: AWJ20_3829
subclass of: SO_0000673
so part of: AWJ20_3829
location: <387080..>388555
location: region:387080-388555:1
so has part: feature:387080-388555:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:387080-388555:1:exon

AWJ20_3829
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MEP3
locus tag: AWJ20_3829
inference: similar to AA sequence:KEGG_Orthology:K03320
note: Ammonium permease of high capacity and low affinity; belongs to a ubiquitous family of cytoplasmic membrane proteins that transport only ammonium (NH4+); expression is under the nitrogen catabolite repression regulation ammonia permease; MEP3 has a paralog, MEP1, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence TAS] [PMID 11486013]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 9234685]; GO_function: GO:0008519 - ammonium transmembrane transporter activity [Evidence IEA]; GO_function: GO:0008519 - ammonium transmembrane transporter activity [Evidence IDA,IMP,ISS] [PMID 9234685]; GO_process: GO:0072488 - ammonium transmembrane transport [Evidence IEA]; GO_process: GO:0015696 - ammonium transport [Evidence IEA,IEA]; GO_process: GO:0015696 - ammonium transport [Evidence IMP,ISS] [PMID 9234685]; GO_process: GO:0019740 - nitrogen utilization [Evidence IMP] [PMID 9234685]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: ammonium permease MEP3
translation: MHSYKVAEDLNRARLGIVARGDSSTNFNFDTGDVGYLMVSTCMVFIMIPGLGFLYSGLARRKSALSMIWFTLSAGCVGIFQWYFWGYSLTFSPTATNGYIGNLYQFGMRHVLGGDATYPELLFAGYQGMFQAVTVAIVMGGAAERGRLFPAMVVTFLWATLVYCPLACWAWGPNGWAGAQWGVLDFAGGGPVEIGSGVAGLAYSIALGRRKEQLLLNFRPHNVSLVTLGTVLLWFGWLGFNGGSALGANLRAVYAVWNSNLCAAFGAMAWCLLDFRLEKKWSTVAICSGIISGLVAATPAAGNIPMWASVILGATAGIVCNFSTQIKYLIHADDSMDTFAEHAMAGIIGLLFNGLFAETWIIGLDGVTVHPGGWMSHNWKQLYKQFAYLCACMGYCFVVTLLICYAVNYIPGCHLRVTEDGERGGIDEDQIGEFAYDYVEIRRNYDSKQFDEPIIYEQRVEEPEHPPEEIEEAEEHSSTTKTNPPQEKASA
SIO_010081: AWJ20_3829
subclass of: SO_0000673
so part of: AWJ20_3829
location: 387080..388555
location: region:387080-388555:1
so has part: feature:387080-388555:1:exon

XP_018733510.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:387080-388555:1:exon

AWJ20_3830
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: csn2
locus tag: AWJ20_3830
so part of: sequence
location: complement(<389005..>390252)
location: region:389005-390252:-1
so has part: feature:389005-390252:-1:exon
subclass of: SO_0000010

30035895
type: Gene
SIO_000068: ncbigene

position:389005:-1
position: 389005
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:390252:-1
position: 390252
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:389005-390252:-1:exon

AWJ20_3830
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: csn2
locus tag: AWJ20_3830
product: COP9/signalosome complex subunit Csn2
transcript id: XM_018880863.1
SIO_010081: AWJ20_3830
subclass of: SO_0000673
so part of: AWJ20_3830
location: complement(<389005..>390252)
location: region:389005-390252:-1
so has part: feature:389005-390252:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:389005-390252:-1:exon

AWJ20_3830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: csn2
locus tag: AWJ20_3830
inference: similar to AA sequence:KEGG_Orthology:K12176
codon start: 1
product: COP9/signalosome complex subunit Csn2
translation: MTSPVITKNYAEKSLNNIIERITCDDLDFMDKIYTTTLDKLKAKQENDRLWIRTSLKLANLYISRELVDKAQDLVNELMEVCHQTNSGSDTIMSTYLLEIYALEIQVCMLTGNIKRLKELYSKTLNVTTAVLHPRILGVIRECGGKMHMQEKKWDIAREDFFESFKNYDEAGSLHRTQVLKYYVLACMLSESGINPFESQETKPYKDDPQVSVIVQLVDVFQKSDVEGFNELMKTHRAEIMSDSFFANFLDDIVLSIRSLGVLNLVKPYRRVSLDHIQNILGVDQATLVEIIVGLILDDRLPNTKIDLTNGFIDLNITNQSASVSSSKQDTRFSTSTSSNNVAPLPSRYYESDRDSAQQQEQQNLVRASSDAVAMAGLSSTSNTSTTTSHTDSQRPVSLAHWLGSLERLHSAIHA
SIO_010081: AWJ20_3830
subclass of: SO_0000673
so part of: AWJ20_3830
location: complement(389005..390252)
location: region:389005-390252:-1
so has part: feature:389005-390252:-1:exon

XP_018733511.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:389005-390252:-1:exon

AWJ20_3831
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: NAM2
locus tag: AWJ20_3831
so part of: sequence
location: complement(<391496..>394201)
location: region:391496-394201:-1
so has part: feature:391496-394201:-1:exon
subclass of: SO_0000010

30035896
type: Gene
SIO_000068: ncbigene

position:391496:-1
position: 391496
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:394201:-1
position: 394201
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:391496-394201:-1:exon

AWJ20_3831
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: NAM2
locus tag: AWJ20_3831
product: leucine--tRNA ligase NAM2
transcript id: XM_018880864.1
SIO_010081: AWJ20_3831
subclass of: SO_0000673
so part of: AWJ20_3831
location: complement(<391496..>394201)
location: region:391496-394201:-1
so has part: feature:391496-394201:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:391496-394201:-1:exon

AWJ20_3831
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: NAM2
locus tag: AWJ20_3831
inference: similar to AA sequence:KEGG_Orthology:K01869
note: Mitochondrial leucyl-tRNA synthetase; also has a direct role in splicing of several mitochondrial group I introns; indirectly required for mitochondrial genome maintenance; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 1990003]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0002161 - aminoacyl-tRNA editing activity [Evidence IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004823 - leucine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004823 - leucine-tRNA ligase activity [Evidence IDA] [PMID 1990003]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IPI] [PMID 11142386]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0000372 - Group I intron splicing [Evidence IMP] [PMID 12486008]; GO_process: GO:0000372 - Group I intron splicing [Evidence IMP] [PMID 2277640]; GO_process: GO:0006429 - leucyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006429 - leucyl-tRNA aminoacylation [Evidence IDA] [PMID 1990003]; GO_process: GO:0032543 - mitochondrial translation [Evidence IGI] [PMID 16777356]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence IEA]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]
codon start: 1
product: leucine--tRNA ligase NAM2
translation: MFRVIQQYPRLVPGCALNYGARFYSESAGLLSTQLDEKWKKIWKSHPPRADAATSDTSKGKYFVLSMFPYPSGILHIGHLRVYTISDVLARYRRLSGYDVIHPMGWDAFGLPAENAAIERNVDPAVWTYSNIEKMRAQMDIMLADLDWDKEVITCSPEYYKFTQKLFIMLYESGYAYRKEAVVNWDPIEKTVLANEQVDNEGRSWRSGAIVEKKKLEQWFLAITKLAPQLLDDLKVLDKWPKKVKTMQRNWIGKSEGAEIQFLFNPSSENGLISKLGLDRVSAFTTRPDTLFGVDYVALSLNHPVSEWYSKQHPQLAKFLEEAKNLPEDSKAGFKIPGLFLSNPLTPDTYDIPVFVAPYVIGDYGHGAVMGCPGHDLRDNAFWAENNPGVEPSVVVRPASDTVAPGEIFAGKDGILNEKSGQFAGLTSKEGGSAIIDYVSKLNGLASKTTQLKLRDWLISRQRFWGAPIPMIHCETDCGIVPVPEEDLPVLLPDGLGAPLSTSEEFTKTTCPKCGGPAHRDTDTMDTFMDSSWYFFRYTDPKNPNQLFDYEKASTLMPVDLYIGGVEHAILHLLYSRFISKFLAETGAWSGGDLNGEPIKRLVTQGMVHGRTLIDGETGRFLKPEEVDESNPQVGPIIKSTGKVAEISSEKMSKSKFNGADPVKCITSHGADATRAHILFQAPVSDVLNWEEQRIVGIERWLARVQSAVDSTIEKGLDTTSELDVSKLSAEDVKLWNEVQKKIEQITAALHEDLSMNTLISDYMKLTRTILNGLESPTTSPAVLYKSTKTLLQLISPVTPANAEEGWEKLLKADGKEWTTIFNQRWPQPSPIEVTIKASGKHRIIINGKSVFELEITDTSISDDELIALIRSNGGDEHLAGKTIKRVIRPDGKPAVSLIAA
SIO_010081: AWJ20_3831
subclass of: SO_0000673
so part of: AWJ20_3831
location: complement(391496..394201)
location: region:391496-394201:-1
so has part: feature:391496-394201:-1:exon

XP_018733512.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:391496-394201:-1:exon

AWJ20_3832
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: NHX1
locus tag: AWJ20_3832
so part of: sequence
location: <396173..>397399
location: region:396173-397399:1
so has part: feature:396173-397399:1:exon
subclass of: SO_0000010

30035897
type: Gene
SIO_000068: ncbigene

position:396173:1
position: 396173
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:397399:1
position: 397399
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:396173-397399:1:exon

AWJ20_3832
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: NHX1
locus tag: AWJ20_3832
product: bifunctional K:H/Na:H antiporter NHX1
transcript id: XM_018880865.1
SIO_010081: AWJ20_3832
subclass of: SO_0000673
so part of: AWJ20_3832
location: <396173..>397399
location: region:396173-397399:1
so has part: feature:396173-397399:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:396173-397399:1:exon

AWJ20_3832
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: NHX1
locus tag: AWJ20_3832
inference: similar to AA sequence:KEGG_Orthology:K12041
note: Na+/H+ and K+/H+ exchanger; required for intracellular sequestration of Na+ and K+; located in the vacuole and late endosome compartments; required for osmotolerance to acute hypertonic shock and for vacuolar fusion; ortholog of human NHE9, which is linked to autism; GO_component: GO:0005769 - early endosome [Evidence IDA] [PMID 22210050]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 20826459]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005770 - late endosome [Evidence IDA] [PMID 20709757]; GO_component: GO:0005770 - late endosome [Evidence IDA] [PMID 22210050]; GO_component: GO:0005770 - late endosome [Evidence IDA] [PMID 9694857]; GO_component: GO:0031902 - late endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 22210050]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0015386 - potassium:proton antiporter activity [Evidence IMP] [PMID 15635088]; GO_function: GO:0015385 - sodium:proton antiporter activity [Evidence IEA]; GO_function: GO:0015385 - sodium:proton antiporter activity [Evidence IMP] [PMID 10998367]; GO_function: GO:0015385 - sodium:proton antiporter activity [Evidence IMP] [PMID 15635088]; GO_function: GO:0015299 - solute:proton antiporter activity [Evidence IEA]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0030004 - cellular monovalent inorganic cation homeostasis [Evidence IMP] [PMID 10589731]; GO_process: GO:1902600 - hydrogen ion transmembrane transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0071805 - potassium ion transmembrane transport [Evidence IMP] [PMID …
codon start: 1
product: bifunctional K:H/Na:H antiporter NHX1
translation: MTALVLKHSHVRRFPQIESCLVLLFAYASYFFSNGCHMSGIVSLLFCGITLKHYAYYNMSRRTQIAIKYIFQLLAQLSENFIFVYLGLSLFTQEELIFKPVLIIVTALGICVSRWAAVFPLSKLINFASRARATRILRGSSLGSASGASASLTDEIPQPYQMMLFWAGLRGAVGVALAAGLEGEHGPSLRATVLVIVVLTVIVFGGTTARMLEILGIRTGVIEDVESDDEFDIEAVLDSRHQREEGFGYNSRSGNLSATHLIGGGVGSTSSPGDLGNISGGFYQPGSRSGSVTRLRRSGSYHDDQLDAANIHGNNNEFDSDVDSDVSDLPPMAGSRSAAGSSSVALDNLGPLNSSNGGSGASGDLAANSSGTSFLRAEDRARWFREFDEQVLKPVLLDSSPGANSPNR
SIO_010081: AWJ20_3832
subclass of: SO_0000673
so part of: AWJ20_3832
location: 396173..397399
location: region:396173-397399:1
so has part: feature:396173-397399:1:exon

XP_018733513.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:396173-397399:1:exon

AWJ20_3833
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SMC6
locus tag: AWJ20_3833
so part of: sequence
location: <399759..>402416
location: region:399759-402416:1
so has part: feature:399759-402416:1:exon
subclass of: SO_0000010

30035898
type: Gene
SIO_000068: ncbigene

position:399759:1
position: 399759
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:402416:1
position: 402416
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:399759-402416:1:exon

AWJ20_3833
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SMC6
locus tag: AWJ20_3833
product: DNA repair protein SMC6
transcript id: XM_018880866.1
SIO_010081: AWJ20_3833
subclass of: SO_0000673
so part of: AWJ20_3833
location: <399759..>402416
location: region:399759-402416:1
so has part: feature:399759-402416:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:399759-402416:1:exon

AWJ20_3833
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SMC6
locus tag: AWJ20_3833
note: Component of the SMC5-SMC6 complex; this complex plays a key role in the removal of X-shaped DNA structures that arise between sister chromatids during DNA replication and repair; homologous to S. pombe rad18; GO_component: GO:0030915 - Smc5-Smc6 complex [Evidence IEA]; GO_component: GO:0030915 - Smc5-Smc6 complex [Evidence IDA] [PMID 15738391]; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11927594]; GO_component: GO:0035861 - site of double-strand break [Evidence IDA] [PMID 16892052]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0019789 - SUMO ligase activity [Evidence IDA] [PMID 15738391]; GO_function: GO:0003684 - damaged DNA binding [Evidence IDA] [PMID 16793545]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 11927594]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 15738391]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0051304 - chromosome separation [Evidence IMP] [PMID 15793567]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IEA]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IMP] [PMID 16892052]; GO_process: GO:0071139 - resolution of recombination intermediates [Evidence IMP] [PMID 20159973]
codon start: 1
product: DNA repair protein SMC6
translation: MDTRQEPVKGDESLTVSPPPAKRFRSQRFNDDNDNSSSPSPVDSESLTSSFTSPEDANNDGAGPSNLSQDLDLDQYEGERDQTISPTIGIDGTPEPEQSVEIQRGSREMEGIARSPQSQSAGKIISVQMINFMCHSNLTISLGRRINFIVGKNGSGKSAVLTAIIIGLGGRASDTDRGSSISDVIKEGQQMASIRIKFDNVGKLSFRHEIYGDFFTLERAISRTERAGHSNYNVYTQSGKKMKISRTDILEMLSISHFSIDIDNQFAILTQDQARTFLVARTQEEMYHLLMRGLRVTQSYHNANVSNNNITATESDLKAKRTDIKELKEKVKNLELRRNNNLRIEEAMREVARYTAMGLWFRHDRQMEKISQLEERNDELKREQAEKQDEADAYSKRAQELVVDTDSQVSELRDQRDKSSAERLEAINRRRELSDKLDSLKQNQVNVNTEKNKNEQHKVELESELNRLTTSEGGKEYLEAQIETVNLKINELKEEEMALVNEAENFESKIKEASDLVKSLQGEVKKYESSILSEKSQLAKIQEGSQVSVDAAYGVNMANVLKEISMNSSFHQKPIGPLGQFVSLKIPTWGPMLEHHLRHTLAAFWTKNTEDRNLLLKILAKYKMTNTVIVKDVDMFDYSWSSPSKEYTTVLDALEFKDESVKRIFIDQYQIHRILLIEDRAEADRVMYSHPKNALVAFAKQKSIDGSQSRDGFQVGANRGGSSSSILRGAPVNKTPRMGVDLRYRVKELEDSIRSTQSQCTRVRSKLDDATRALGESKESSRQTTRRLSSLRHEMRTLDEKRDDLQTQLEDYDNGKVLEVQGEIENCKQRIETYILQFEKIHADMLETQEDVRLADTIIAEADKIHDELCNRIETIRVCIAVLIL
SIO_010081: AWJ20_3833
subclass of: SO_0000673
so part of: AWJ20_3833
location: 399759..402416
location: region:399759-402416:1
so has part: feature:399759-402416:1:exon

XP_018733514.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:399759-402416:1:exon

AWJ20_3834
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SMC6
locus tag: AWJ20_3834
so part of: sequence
location: <402676..>403341
location: region:402676-403341:1
so has part: feature:402676-403341:1:exon
subclass of: SO_0000010

30035899
type: Gene
SIO_000068: ncbigene

position:402676:1
position: 402676
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:403341:1
position: 403341
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:402676-403341:1:exon

AWJ20_3834
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SMC6
locus tag: AWJ20_3834
product: DNA repair protein SMC6
transcript id: XM_018880867.1
SIO_010081: AWJ20_3834
subclass of: SO_0000673
so part of: AWJ20_3834
location: <402676..>403341
location: region:402676-403341:1
so has part: feature:402676-403341:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:402676-403341:1:exon

AWJ20_3834
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SMC6
locus tag: AWJ20_3834
note: Component of the SMC5-SMC6 complex; this complex plays a key role in the removal of X-shaped DNA structures that arise between sister chromatids during DNA replication and repair; homologous to S. pombe rad18; GO_component: GO:0030915 - Smc5-Smc6 complex [Evidence IEA]; GO_component: GO:0030915 - Smc5-Smc6 complex [Evidence IDA] [PMID 15738391]; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11927594]; GO_component: GO:0035861 - site of double-strand break [Evidence IDA] [PMID 16892052]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0019789 - SUMO ligase activity [Evidence IDA] [PMID 15738391]; GO_function: GO:0003684 - damaged DNA binding [Evidence IDA] [PMID 16793545]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 11927594]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 15738391]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0051304 - chromosome separation [Evidence IMP] [PMID 15793567]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IEA]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IMP] [PMID 16892052]; GO_process: GO:0071139 - resolution of recombination intermediates [Evidence IMP] [PMID 20159973]
codon start: 1
product: DNA repair protein SMC6
translation: MEKDMTIENLAQKILELRATMETLEKENGCDMVELVKQYTEANTALLNAKKEYDNLNRVYSVLIGSSKNRESKYEAIVTATLDSIKKGFKVNLGMRGFNGKLIIDRTEENLIMDIDPVKSAVTRKVETLSGGEKSFAQIALLISIWRAMPSKLLALDEFDVFMDNANRKQSLDMVIKSLGNRYNAQSIVITPQDMEIDDVQLKNNDITIQRMPDPVRSAPH
SIO_010081: AWJ20_3834
subclass of: SO_0000673
so part of: AWJ20_3834
location: 402676..403341
location: region:402676-403341:1
so has part: feature:402676-403341:1:exon

XP_018733515.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:402676-403341:1:exon

AWJ20_3835
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: USO1
locus tag: AWJ20_3835
so part of: sequence
location: complement(<403435..>405690)
location: region:403435-405690:-1
so has part: feature:403435-405690:-1:exon
subclass of: SO_0000010

30035900
type: Gene
SIO_000068: ncbigene

position:403435:-1
position: 403435
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:405690:-1
position: 405690
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:403435-405690:-1:exon

AWJ20_3835
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: USO1
locus tag: AWJ20_3835
product: Uso1p
transcript id: XM_018880868.1
SIO_010081: AWJ20_3835
subclass of: SO_0000673
so part of: AWJ20_3835
location: complement(<403435..>405690)
location: region:403435-405690:-1
so has part: feature:403435-405690:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:403435-405690:-1:exon

AWJ20_3835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: USO1
locus tag: AWJ20_3835
note: Essential protein involved in vesicle-mediated ER to Golgi transport; binds membranes and functions during vesicle docking to the Golgi; required for assembly of the ER-to-Golgi SNARE complex; GO_component: GO:0012507 - ER to Golgi transport vesicle membrane [Evidence IDA] [PMID 17192843]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA,IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 17192843]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0030659 - cytoplasmic vesicle membrane [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008565 - protein transporter activity [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 8603910]; GO_process: GO:0048211 - Golgi vesicle docking [Evidence IDA] [PMID 9545229]; GO_process: GO:0048193 - Golgi vesicle transport [Evidence IEA]; GO_process: GO:0035493 - SNARE complex assembly [Evidence IMP] [PMID 8603910]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0048280 - vesicle fusion with Golgi apparatus [Evidence IEA]
codon start: 1
product: Uso1p
translation: MFRTELHKLLSSTIGRDQYVVKFKKLRENPVLKEFDVDDIFSYERDKTGLPQVYLDSAYVDLLKENSARIQKALDRDPTVEPNSRVSLDMYESLQSEHLDICRELEELKEKTTGLEHSTSEQIENLKETISKTTGLLQESEKNLKAAKSEKESLELAHTKSIKDMEELEVKYNKLDENFKQISDSLQKANRAVEEHKQKEKQLISQLGNMTRDKEKAEGGINKMNRELFSLTRAKEDADKENKTLQKQIQDLQKQILKSQESDSKLKSQLKEMTASRDKILRESKESLEAAKKFELQVKASSAELVQVKTQFQELSDSFTEVETLKETLISKLQSAAQQIEQLKSRKAELGTEIEKLNNEKANLSSELDKSKLLNSELKSKVDAIALDKDSRGKEIESLSRRIVEFETAKSKLEDELKISENTTEALTKEKQESELLKTALREEINQLKIELDELRAENNTLKLEAANLVENGNPKQAEELEKKYKDQVSEMEFKLKNLSDELSAAKQKDSEDKDTQLSTLEDEISSLEKEKSILEKVNSAKLASLEKAHSTEKDSLEQQHVKEKDNLHKDFSDQKSILEKEFVKQKEEILSSHENEKETLEKAHRKAIEENKKILFASHTDAMEKLRNELQKSQSAEAEKLKDLYEKSQQENIALSRKFEEQVAKLESENKNLTQKLQLGEKSKDKPTVDMVPKSDLDDLMLLLNDLDEQKKKYKKQLLKLGADVTDSEDDSEDDDDEEEGDDEGDEDGN
SIO_010081: AWJ20_3835
subclass of: SO_0000673
so part of: AWJ20_3835
location: complement(403435..405690)
location: region:403435-405690:-1
so has part: feature:403435-405690:-1:exon

XP_018733516.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:403435-405690:-1:exon

AWJ20_3836
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: USO1
locus tag: AWJ20_3836
so part of: sequence
location: complement(<405732..>407753)
location: region:405732-407753:-1
so has part: feature:405732-407753:-1:exon
subclass of: SO_0000010

30035901
type: Gene
SIO_000068: ncbigene

position:405732:-1
position: 405732
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:407753:-1
position: 407753
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:405732-407753:-1:exon

AWJ20_3836
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: USO1
locus tag: AWJ20_3836
product: Uso1p
transcript id: XM_018880869.1
SIO_010081: AWJ20_3836
subclass of: SO_0000673
so part of: AWJ20_3836
location: complement(<405732..>407753)
location: region:405732-407753:-1
so has part: feature:405732-407753:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:405732-407753:-1:exon

AWJ20_3836
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: USO1
locus tag: AWJ20_3836
note: Essential protein involved in vesicle-mediated ER to Golgi transport; binds membranes and functions during vesicle docking to the Golgi; required for assembly of the ER-to-Golgi SNARE complex; GO_component: GO:0012507 - ER to Golgi transport vesicle membrane [Evidence IDA] [PMID 17192843]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA,IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 17192843]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0030659 - cytoplasmic vesicle membrane [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008565 - protein transporter activity [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 8603910]; GO_process: GO:0048211 - Golgi vesicle docking [Evidence IDA] [PMID 9545229]; GO_process: GO:0048193 - Golgi vesicle transport [Evidence IEA]; GO_process: GO:0035493 - SNARE complex assembly [Evidence IMP] [PMID 8603910]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0048280 - vesicle fusion with Golgi apparatus [Evidence IEA]
codon start: 1
product: Uso1p
translation: MLSGFLSQTQPKPQTASVTITKLCDRLQHSTLLEDRRAAVLGLKGFSREYRETVAAGGLRGLISALHRDSEDAETCRATLETLLILFMPDELSEDQATTTNGNSTGSGRQARRPLEQNSRFTRSRGKKYSSPLLKPNHNPDNISLWLTDEFTQKQDNIITLLELVEKTDDFFTKLYALQLLSAIISNRPLRSQECILAAPLGISSLVACLDDYRDVIRNEAILLLLYLVSEHFDMQKLVAFEGTFDKLFSIIDIEGGLNGGVVVEEAISLLSALLRYNVSNQHHFRETNCVPKLVSLLENKDTLDQLSSDDSGSLSNAIIGTLELCRLFVIEDHWSTPVNQQALCKEGLLFTVLRLAFGVSTPMPVRCSAFLTAAALVRGNSPLQEEFLAIDVPYFDLSIAFNVEKEPLIIPVSLALLNWVLLSTSVHTFDLRVAAQLCLSSALQGNIQAKLSFLKDQMASYPGNMSEVADELEIKDKVESRSTSTSPNLEQIETNAPKIVGDAKPQPDYPEGSANLFSALVDYDPDARLNPYKPWFAAVILINLFEDADISNPSHYNTESHEVRDFVRGLMIGDASIGEEVVSCIQAMSGMLVTSLRYPDPRISLGYLMLLSIWLYDDTKAVSDFLGESGTIQALISSATHSSNNDPLVEALSTVLLGIVYDFSSAESPIPR
SIO_010081: AWJ20_3836
subclass of: SO_0000673
so part of: AWJ20_3836
location: complement(405732..407753)
location: region:405732-407753:-1
so has part: feature:405732-407753:-1:exon

XP_018733517.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:405732-407753:-1:exon

AWJ20_3837
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3837
so part of: sequence
location: <412571..>414010
location: region:412571-414010:1
so has part: feature:412571-414010:1:exon
subclass of: SO_0000010

30035902
type: Gene
SIO_000068: ncbigene

position:412571:1
position: 412571
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:414010:1
position: 414010
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:412571-414010:1:exon

AWJ20_3837
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3837
product: hypothetical protein
transcript id: XM_018880870.1
SIO_010081: AWJ20_3837
subclass of: SO_0000673
so part of: AWJ20_3837
location: <412571..>414010
location: region:412571-414010:1
so has part: feature:412571-414010:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:412571-414010:1:exon

AWJ20_3837
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3837
codon start: 1
product: hypothetical protein
translation: MTEGSPGLLQDQKYDTSRNIIILDTSHYAQSAMLSSDPPVTDHENGHALPTNGSTIYTSESYQSRPQQPAPDNPPERPPQGELIIRDRINPFATVPGTLLPPECTVKHQDLELIHHYSFHTDNIIMMQSAREKPIWERVVPKVSFAFPYLSDALLAISALHLQHCSDGSRDLRNYALQKYYNAMSSSQVLDITNSFEPKFLTSCFLMMLAFSFDDVIDLISFNGKPDVFALSRGPYILAERLFPFLSKGPLRGLLRQVPGEDNAFAKAMELRLPAYENLYSVLSMLSRPSVSRSSQSSSDSSHRYSIPEDAIPMANFDFVEVKSEVETSSSNSSVTTSEGNFPTSVVDTYASHMHEHSILKNELDRLICIVKASIYFNAEPLIITWITSVSNDFANLARRNNSFAKVIIAYYMAALHTCQGVFWIGGRPAREVIKIANSLPSEWTDLMSKPLQIVQRQYVSLTDLLELSGWVSDTPGHL
SIO_010081: AWJ20_3837
subclass of: SO_0000673
so part of: AWJ20_3837
location: 412571..414010
location: region:412571-414010:1
so has part: feature:412571-414010:1:exon

XP_018733518.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:412571-414010:1:exon

AWJ20_3838
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: UTP20
locus tag: AWJ20_3838
so part of: sequence
location: complement(<414180..>420110)
location: region:414180-420110:-1
so has part: feature:414180-420110:-1:exon
subclass of: SO_0000010

30035903
type: Gene
SIO_000068: ncbigene

position:414180:-1
position: 414180
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:420110:-1
position: 420110
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:414180-420110:-1:exon

AWJ20_3838
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: UTP20
locus tag: AWJ20_3838
product: Utp20p
transcript id: XM_018880871.1
SIO_010081: AWJ20_3838
subclass of: SO_0000673
so part of: AWJ20_3838
location: complement(<414180..>420110)
location: region:414180-420110:-1
so has part: feature:414180-420110:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:414180-420110:-1:exon

AWJ20_3838
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: UTP20
locus tag: AWJ20_3838
inference: similar to AA sequence:KEGG_Orthology:K14772
note: Component of the small-subunit (SSU) processome; SSU processome is involved in the biogenesis of the 18S rRNA; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 17652137]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17652137]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15590835]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 17652137]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 17652137]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030688 - preribosome, small subunit precursor [Evidence IDA] [PMID 17652137]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 15590835]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 17652137]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 17652137]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-r…
codon start: 1
product: Utp20p
translation: MIINIVESLRSPSHDVRYLAIQVIIFIYQAMRLEVPKLITDCKLIDEIPLDVSNARNFGLYIRNLSNSYAGTGADTLLDLIIPRFFFGLLTAKFQPIWEASVEAISKISEKNGEIIWSLAYEWIVYEPKISPVFGMFDDIILDEPEQSATVECSNLSQVINHSVSSFYKYSNSQNFSKLSIRDSLDKIDFPPTVRGQIIKVLASIPRVAEKHSRLLVPFLLWDINSDDGEDSEETETPLSSTWSVKDRIALLDLFSLFGNPKTLYKSEEVYERYLYLLGNRSLAVQKIALKCLLTFKNPQIRKYRDNLEGMLDDTQFKDELTNLVRYSGEEGTIHEDDRAALLPIVIRIIFGRAQIAKTGGVKQGRRFAVVNSLSNVEPEYLRLFIDLSANRLEHEGFLKGSYDGVLTINPEFSHFQSSDLRLRRELGFVTMLEEILEQLGDRVHVAWDIIIESLILCLYRANQAHTDLNEQDEDEPTDSVIGKNIRSIRQLGFKCLNALFSILPGSNWAGCFDIIYSNFISNRMAKFAEENLQQPSSLMRIFVTLSSEKSLVRFLTWDNCAIIKSFFACLSYDEVKDSVVDVIMDTMNNILELERSEDTETLSVTGVPIVLNRMPYLFERQSNHQLLEKEAQLLVKLMTSGYEASDDIRKQLIEVSLAALEKNTTLVRVSVKVSVLQTLSVLLMDGRSTLEECTSAYYTLSKLFRQFTNRQARENLAAVFDVFGDQFDVFKTVSKLVVDLNSYSAKRLDLPDFDRRLSAFAVINETKFDKLTAMEWLPLLYNMLFFMKDPEELALRTNATYSVKRFIDGLASRTNEEDVSSYVQLLDDVVIPVVKTSLRDSNDIFRTQFIDVLGHIVKAAKWYSKMNDMKCLLFDGDEEANFFNNINHLQIHRRRRAVRRLSKLASKGSLTDTNIAHYILPIIEHFVGGTEGDAHNLSEDSIKCIGVLARHLTWNQYRAITKRYIAYLNSRPESIKATVKLVETASDALISPVDETDMDLSLLEEDEDEDTTMAGSEDISPAVVNSVEGAVKLADCLPSVERLSAFITEDIVPTMQKVLNKKNDDDTLTLRIPLALPIVKFIKALPEALIELKLPGVLTGLCQILRAKSQELRDMIRSTLGRIARILGTKYLVFIIKELKGALRRGAQLHILGYSLHSLLSELKDIILPRDLDVSATLIMDIIMEDTFGVTGGEKDEEGYTSDMKEVKQYKSYDSGQILASNVGLGTFSELVEPVKTLLLYEKLNLKMEKKVEELLRRFALGLYHNIDASKQEVLVMCFELYEMVNNVSTEIEKKKKIDSESHIRDEQKREAEEHFMIQLDSRHWGEQNTIRIGNLHIITKFVIEMIRTVLGKNEHMMTAENVAGFMPMLDEGLNGNYEDVQIASLRLLAHIIKLPIPDVSGRVVSLGRRTLWLIKSSTSTNTELCQACLRFISVCIRQKKDFSLKEKELAYCLNRLKPDIEEPDRQGITLTFIRAVLSRQIMMPEVYDIMDQVAQVMVTNQSNVTREACRSAYFQFLTEYPQGKGRLTKQLKFLVANLEYPAVSGRLSVMEIIHLLLAKVTDDQVQEVIASFFVALVLVLINDEESQCRETAAALIGELLDISKDEQLSLIEKYCTTWLTNRENELLLRGGFQVTGIYCAKFGVRKNPKLFKLAISVLEKLLEDAKSDSNVVVQWETLYQGLQFVAKTVQNSNGLKILFSSNYQQLWDLIESSLLFPHAWVRLASSRLIGKLYSVYSGGKNCEITISTDGLQSTAFKFVRQLGAASISEDLGIQIVKNLVFISMQWEKSEETIYFVKPRSSNEDEDEDDDTATEERIPVIRWLIQKISSVLRAEKNFKEMIVSKKASIQLLASIIQLLSVEKLSEMAEDIIMAFYIYSISEEDRTRDLKELCLEALNMVQKKLGTTKYVQAYSNVQQQVSERRLERKSKRAIQSVSAPDVYARKKLRKNLAKREKRKHSKDENGYYHSKKSKNA
SIO_010081: AWJ20_3838
subclass of: SO_0000673
so part of: AWJ20_3838
location: complement(414180..420110)
location: region:414180-420110:-1
so has part: feature:414180-420110:-1:exon

XP_018733519.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:414180-420110:-1:exon

AWJ20_3839
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3839
so part of: sequence
location: complement(<420190..>421350)
location: region:420190-421350:-1
so has part: feature:420190-421350:-1:exon
subclass of: SO_0000010

30035904
type: Gene
SIO_000068: ncbigene

position:420190:-1
position: 420190
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:421350:-1
position: 421350
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:420190-421350:-1:exon

AWJ20_3839
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3839
product: hypothetical protein
transcript id: XM_018880872.1
SIO_010081: AWJ20_3839
subclass of: SO_0000673
so part of: AWJ20_3839
location: complement(<420190..>421350)
location: region:420190-421350:-1
so has part: feature:420190-421350:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:420190-421350:-1:exon

AWJ20_3839
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3839
codon start: 1
product: hypothetical protein
translation: MSFLLRKSTGSSLDLIIDHILDDVISHPKADFVTSVANLFSDSIKSSGNNLHSRTSEILSALLRSCKKHVNQSLVVVDVSSAVLVALLHHVRQETAHILYTESMTFVDSMLGEKELSDNQIILAQTVIRDLSGLRKGSRVSDWTPLFGKFLSILGRITEASSQQVLISTLTASVSLLQSANFESTTKYCSPLVQELYRLLGQEYFLSFCESMVEYNPTVFSNHLIVYVQRFIKEYRSDVSSVHLLLTKLESAGLVNRTSQPVPGKLFTAPDSAFSKSLEQKVQFPKLDSVNGLYDLFIALDIFAIAVIPTDKLSKSLPKLLERIILEVNESNIAWKKALVGKTLSLVNEPSVAAEMIDTIKESFSELSDSKIFLEGFLNLWRANKG
SIO_010081: AWJ20_3839
subclass of: SO_0000673
so part of: AWJ20_3839
location: complement(420190..421350)
location: region:420190-421350:-1
so has part: feature:420190-421350:-1:exon

XP_018733520.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:420190-421350:-1:exon

AWJ20_3840
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: URA7
locus tag: AWJ20_3840
so part of: sequence
location: complement(<422530..>424269)
location: region:422530-424269:-1
so has part: feature:422530-424269:-1:exon
subclass of: SO_0000010

30035906
type: Gene
SIO_000068: ncbigene

position:422530:-1
position: 422530
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:424269:-1
position: 424269
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:422530-424269:-1:exon

AWJ20_3840
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: URA7
locus tag: AWJ20_3840
product: CTP synthase URA7
transcript id: XM_018880874.1
SIO_010081: AWJ20_3840
subclass of: SO_0000673
so part of: AWJ20_3840
location: complement(<422530..>424269)
location: region:422530-424269:-1
so has part: feature:422530-424269:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:422530-424269:-1:exon

AWJ20_3840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: URA7
locus tag: AWJ20_3840
inference: similar to AA sequence:KEGG_Orthology:K01937
note: Major CTP synthase isozyme (see also URA8); catalyzes the ATP-dependent transfer of the amide nitrogen from glutamine to UTP, forming CTP, the final step in de novo biosynthesis of pyrimidines; involved in phospholipid biosynthesis; capable of forming cytoplasmic filaments termed cytoophidium, especially during conditions of glucose depletion; URA7 has a paralog, URA8, that arose from the whole genome duplication; GO_component: GO:0097268 - cytoophidium [Evidence IDA] [PMID 20713603]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003883 - CTP synthase activity [Evidence IEA,IEA]; GO_function: GO:0003883 - CTP synthase activity [Evidence IMP,ISS] [PMID 1753946]; GO_function: GO:0003883 - CTP synthase activity [Evidence IDA] [PMID 8075080]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0044210 - 'de novo' CTP biosynthetic process [Evidence IEA]; GO_process: GO:0006241 - CTP biosynthetic process [Evidence IDA] [PMID 8075080]; GO_process: GO:0006541 - glutamine metabolic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IMP] [PMID 9668079]; GO_process: GO:0019856 - pyrimidine nucleobase biosynthetic process [Evidence IMP] [PMID 1753946]; GO_process: GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA,IEA]
codon start: 1
product: CTP synthase URA7
translation: MKYVVVSGGVISGIGKGVIASSTGLLFKTMGLKATSIKIDPYMNIDAGTMSPLEHGEVFVLNDGGEVDLDLGNYERYLNVTLTRDHNITTGKVYKQVIEKERRGDYLGKTVQIVPHLTNAIQDWIEKVAHIPVDGDNEVPDVCIIELGGTVGDIESAPFVEALRQFQFRVGPENFALIHVSLVPVIHGEKKTKPTQAAIKDLRSLGLTPDIIACRCSEELDQAAIDKISMFCHVGPNQVLGVHDVNSTYHVPLLLHDQKLMEFFSKRFKLDELKLSSERIAKGQDLWTRWNSITQSHDRSFQKVTIALVGKYTNLQDSYISVVKALEHSALRCELKLEIVWVEASDLEIESSVTNKINYHKAWGSLCSADGILVPGGFGTRGTEGMIAAARWARENLVPYLGICLGFQVGVIDYARHVLNMKTNSIELDETIEDPVIVYMPEVDKINMGGTMRLGIRPAVFQESTENSVLRRLYGSAPTVMERHRHRYEVNPEHIDELEKSGLHFVAKDEKAERMEVFELKNHPYFVGTQYHPEYLSRVLDPSKPLLGLVAAAGGKLESILAATVDHHSDQAKGPVTDF
SIO_010081: AWJ20_3840
subclass of: SO_0000673
so part of: AWJ20_3840
location: complement(422530..424269)
location: region:422530-424269:-1
so has part: feature:422530-424269:-1:exon

XP_018733521.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:422530-424269:-1:exon

AWJ20_3841
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3841
so part of: sequence
location: <423019..>423783
location: region:423019-423783:1
so has part: feature:423019-423783:1:exon
subclass of: SO_0000010

30035907
type: Gene
SIO_000068: ncbigene

position:423019:1
position: 423019
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:423783:1
position: 423783
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:423019-423783:1:exon

AWJ20_3841
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3841
product: hypothetical protein
transcript id: XM_018880875.1
SIO_010081: AWJ20_3841
subclass of: SO_0000673
so part of: AWJ20_3841
location: <423019..>423783
location: region:423019-423783:1
so has part: feature:423019-423783:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:423019-423783:1:exon

AWJ20_3841
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3841
codon start: 1
product: hypothetical protein
translation: MTSIINDTNLETKTNTEVRNQIFTGPASSSNHTLSTSGTKSTRNKNTISRAETAPGLVVVDLVSNGAFDLKIGSFDPNNLELKLASQSRVLKSLDNRNITVLKIGIFTDQGNSDLLETTVMGLGNTIPTSPQILTLSNTLRRQFKFIELKTLGKEFHQLLVVQKKRNMVSRIDIMDTQNLVRTDVTEHRDLVNSSLVKLFRTSTGNNIGCQTKGSQILDSSLSRFGLLLTMYNRNKRNVNQSKVLRTDSELKLT
SIO_010081: AWJ20_3841
subclass of: SO_0000673
so part of: AWJ20_3841
location: 423019..423783
location: region:423019-423783:1
so has part: feature:423019-423783:1:exon

XP_018733522.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:423019-423783:1:exon

AWJ20_3842
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: YPR1
locus tag: AWJ20_3842
so part of: sequence
location: <425685..>426581
location: region:425685-426581:1
so has part: feature:425685-426581:1:exon
subclass of: SO_0000010

30035908
type: Gene
SIO_000068: ncbigene

position:425685:1
position: 425685
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:426581:1
position: 426581
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:425685-426581:1:exon

AWJ20_3842
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: YPR1
locus tag: AWJ20_3842
product: trifunctional aldehyde reductase/carbonyl reductase (NADPH)/glucose 1-dehydrogenase (NADP(+)) YPR1
transcript id: XM_018880876.1
SIO_010081: AWJ20_3842
subclass of: SO_0000673
so part of: AWJ20_3842
location: <425685..>426581
location: region:425685-426581:1
so has part: feature:425685-426581:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:425685-426581:1:exon

AWJ20_3842
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: YPR1
locus tag: AWJ20_3842
inference: similar to AA sequence:KEGG_Orthology:K18097
note: NADPH-dependent aldo-keto reductase; reduces multiple substrates including 2-methylbutyraldehyde and D,L-glyceraldehyde, expression is induced by osmotic and oxidative stress; functionally redundant with other aldo-keto reductases; protein abundance increases in response to DNA replication stress; YPR1 has a paralog, GCY1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004090 - carbonyl reductase (NADPH) activity [Evidence IDA] [PMID 19016485]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0042843 - D-xylose catabolic process [Evidence IDA] [PMID 12271459]; GO_process: GO:0019568 - arabinose catabolic process [Evidence IDA,IMP] [PMID 12271459]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]
codon start: 1
product: trifunctional aldehyde reductase/carbonyl reductase (NADPH)/glucose 1-dehydrogenase (NADP(+)) YPR1
translation: MSAATLNTSTATLNDGNKIPYVGFGTWQVNDETDGYDALIYALKHGYRHIDTAFAYKNEAVVGKAVRDSGIPREEIFVVSKLWGKDHRDPAAALDKSLKLLGLDYVDLYLMHWPVPFKNIEDKDEIDEDWNHVKTWELMQKLPKSKVKSIGVSNYDTALLEELSKAPTTTVVPVINQVELHPYLAQDKLRDYCNEHKIVLEAYCPLGKGTKLLEEPIVVELAEKYKVSPGQIALSWGIARGYVVIPKSSTPSRIEANLHTVKLSKEDEEKLTSLSKTNPQRRVRPGWKTKILFNDDDF
SIO_010081: AWJ20_3842
subclass of: SO_0000673
so part of: AWJ20_3842
location: 425685..426581
location: region:425685-426581:1
so has part: feature:425685-426581:1:exon

XP_018733523.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:425685-426581:1:exon

AWJ20_3843
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RMD1
locus tag: AWJ20_3843
so part of: sequence
location: <427253..>428629
location: region:427253-428629:1
so has part: feature:427253-428629:1:exon
subclass of: SO_0000010

30035909
type: Gene
SIO_000068: ncbigene

position:427253:1
position: 427253
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:428629:1
position: 428629
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:427253-428629:1:exon

AWJ20_3843
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RMD1
locus tag: AWJ20_3843
product: Rmd1p
transcript id: XM_018880877.1
SIO_010081: AWJ20_3843
subclass of: SO_0000673
so part of: AWJ20_3843
location: <427253..>428629
location: region:427253-428629:1
so has part: feature:427253-428629:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:427253-428629:1:exon

AWJ20_3843
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RMD1
locus tag: AWJ20_3843
note: Cytoplasmic protein required for sporulation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]
codon start: 1
product: Rmd1p
translation: MSEQTPLLAPQTSAGSAMSRNQMPLGVAQGTTELMSQDIANQHHLQQKGQSQEHQGSSGSTVTRTGPSSTNNQFHRHNNPNINTTPIRPDYPPVINGTGAGVRRNGPQRTSYTTQKLKLLPDEPVSTDDDDISISEGDVYSQVARIKDRPARKDAERLGKAHRSMLPRVTAYCTAGSYRINDLSRYFLGRKSHGTAPKLFDECLYTPYRYRRDNGSSSTNTSPTLSTAPDPTSDETIVSSEADSQPSDFIRLDDEGGEIDVSYGRSELFLFDYGVTVFWGFTEAEEKRFLKELARFETEKLADEDVQIEEFNYYITKSYQPRIYNDFITLRDNTNYMIKLSISHAIAQSVKISLFEELVDNTIEDTQDFPQEIALTGKINMNRKNIMKSIGELFILRISKLKTVNEATKAIKYTNNQQILICTDQFWTRLNLCGQSHILSPFIKLPVDILKSTREFRS
SIO_010081: AWJ20_3843
subclass of: SO_0000673
so part of: AWJ20_3843
location: 427253..428629
location: region:427253-428629:1
so has part: feature:427253-428629:1:exon

XP_018733524.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:427253-428629:1:exon

AWJ20_3844
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3844
so part of: sequence
location: <434804..>436258
location: region:434804-436258:1
so has part: feature:434804-436258:1:exon
subclass of: SO_0000010

30035910
type: Gene
SIO_000068: ncbigene

position:434804:1
position: 434804
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:436258:1
position: 436258
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:434804-436258:1:exon

AWJ20_3844
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3844
product: hypothetical protein
transcript id: XM_018880878.1
SIO_010081: AWJ20_3844
subclass of: SO_0000673
so part of: AWJ20_3844
location: <434804..>436258
location: region:434804-436258:1
so has part: feature:434804-436258:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:434804-436258:1:exon

AWJ20_3844
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3844
codon start: 1
product: hypothetical protein
translation: MKLTVGLVATLWVQLQLTQGLQPVIRDYSNPSTPASQFRLAYNGAEGVTVSWNSPSQINSPQVWYGEDPNNLVASSPGTSTTFSTATSWDNHVTIGNLKPNTKYYYRVTGLADNFDVVGQNFYFTTARTTGDRTPYSIGFIADLGIVIGNLFGKQIPDTFDSILSARDSLDFLWHSGDFGYADDWLWEELTGAYPLNLDGGVATYNNIMNSYYDQFVNVTKNTPYMVGPGNHEADCIEPDLDYITNKFDLTICPSGQRNFTYHRNHFAMPTAEQAQDYFQNLWYSWNHGMTHFVQINTETDLAAGTTAPDEPGGDGGLDAGPFGFPNQQLQWLEADLAAVDRTKTPWLVVAGHRPWYSASTVCTECQEAFENLVIKYKVDLVMAGHVHYYERDAPVANGVVDPNGLNNPSAPWYITNGAAGNFEGHSSNSGKNPSYTSIINNSDYGWSKLTFHNSTHLTHDFISSETDQVLDTATLYKDHGLGW
SIO_010081: AWJ20_3844
subclass of: SO_0000673
so part of: AWJ20_3844
location: 434804..436258
location: region:434804-436258:1
so has part: feature:434804-436258:1:exon

XP_018733525.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:434804-436258:1:exon

AWJ20_3845
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CDC4
locus tag: AWJ20_3845
so part of: sequence
location: complement(<437248..>439506)
location: region:437248-439506:-1
so has part: feature:437248-439506:-1:exon
subclass of: SO_0000010

30035911
type: Gene
SIO_000068: ncbigene

position:437248:-1
position: 437248
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:439506:-1
position: 439506
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:437248-439506:-1:exon

AWJ20_3845
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CDC4
locus tag: AWJ20_3845
product: SCF ubiquitin ligase complex subunit CDC4
transcript id: XM_018880879.1
SIO_010081: AWJ20_3845
subclass of: SO_0000673
so part of: AWJ20_3845
location: complement(<437248..>439506)
location: region:437248-439506:-1
so has part: feature:437248-439506:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:437248-439506:-1:exon

AWJ20_3845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CDC4
locus tag: AWJ20_3845
inference: similar to AA sequence:KEGG_Orthology:K03361
note: F-box protein required for both the G1/S and G2/M phase transitions; modular substrate specificity factor which associates with core SCF (Cdc53p, Skp1p and Hrt1p/Rbx1p) to form the SCFCdc4 complex; SCFCdc4 acts as a ubiquitin-protein ligase directing ubiquitination of cyclin-dependent kinase (CDK) phosphorylated substrates, such as: Sic1p, Far1p, Cdc6p, Clb6p, and Cln3p; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA,IPI] [PMID 9346238]; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA,IPI] [PMID 9346239]; GO_component: GO:0043224 - nuclear SCF ubiquitin ligase complex [Evidence IDA] [PMID 11080155]; GO_component: GO:0016363 - nuclear matrix [Evidence IDA] [PMID 2244914]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11080155]; GO_function: GO:0050815 - phosphoserine binding [Evidence IDA] [PMID 23314252]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 21070969]; GO_function: GO:0061630 - ubiquitin protein ligase activity [Evidence IDA] [PMID 9346238]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 9346239]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 10409741]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IGI,IMP] [PMID 10409741]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IGI] [PMID 7954792]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346238]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346239]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IMP] [PMID 328339]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: G…
codon start: 1
product: SCF ubiquitin ligase complex subunit CDC4
translation: MSEQDPLSLGHISRPAVAEQSFAAVMSGSNGSAGSGSVNEPSGHSSIASSSSSAIIDHFNEEFKSPLTPAPSPTAHHHYSYSNSSSPNTSSHSPNSRNFHQLQQEWNLDESQHYNYHLHQLRSRRTGGGRLDSVVGQDFPSAHDDYQKESSTSKALSLVESVRSQFGSLDDEGRSLFLGELLAMCGRAVLSETLDYISPMLKRDPMVVLPSELALKVLSYVDDPLSLARASQVSKTWYLMISDDLTWKELCKTHHFRRLSAAVNVAMSGDNLRGRVPSVVGVNSGIHPGTVVPGSSPTGSVSGQSDLTEAFYNPNATKRPVPTSYRSHFKQQYLLNSAWASGGRLAAKYVISIPGVVTSLLMEGQYIVIALDNSKIFVFREDGRLLRALFGHVMGVWALALRGHTLVSGGCDRDVRVWDLRSGGCSQILKGHSSTVRCLQMVDEDTAISGSRDATIRIWDVKKGICKRVLEGHDASVRCVEVHGDICVSGSYDFTAKVWRISDGTLLHTLVGHISQIYSLAFDGKRIATGSLDASIRIWDPETGLCLAFLQGHTSLVGQLQMKGNILVSGGSDGAIRVWDLENYTCLQRFTAHDNSVTTLQFDEERIVSGGSDGKVEVWELATGKHIRSLSGPFDAVWRVAFKDEKIAILASRQNMIHMELMSFTPTVDRADSTATPPTIEFRSTDGYGRRRGHSTKPSDDPGMSPTMVPVGRESPEHTMTDRPSGTVVTAPTAAATPGQPRQDDDAMDISA
SIO_010081: AWJ20_3845
subclass of: SO_0000673
so part of: AWJ20_3845
location: complement(437248..439506)
location: region:437248-439506:-1
so has part: feature:437248-439506:-1:exon

XP_018733526.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:437248-439506:-1:exon

AWJ20_3846
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3846
so part of: sequence
location: <442775..>443782
location: region:442775-443782:1
so has part: feature:442775-443782:1:exon
subclass of: SO_0000010

30035912
type: Gene
SIO_000068: ncbigene

position:442775:1
position: 442775
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:443782:1
position: 443782
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:442775-443782:1:exon

AWJ20_3846
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3846
product: hypothetical protein
transcript id: XM_018880880.1
SIO_010081: AWJ20_3846
subclass of: SO_0000673
so part of: AWJ20_3846
location: <442775..>443782
location: region:442775-443782:1
so has part: feature:442775-443782:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:442775-443782:1:exon

AWJ20_3846
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3846
inference: similar to AA sequence:KEGG_Orthology:K11205
codon start: 1
product: hypothetical protein
translation: MSLIFYTGNTLDQTLLNDQKLSGRIINSIQAWRSNRSYSDPLKGSRNSTANGNSSGTAATIQTTAAVTSSTTTASTSTTTTDSSTTITSSTTNSTSTNTTAVIVPPISFHKPTAGCPNADLTAKLFLPANATPNQAHIAINEMLDIIGPLIPAGSVDGDALIKIFIISLEGLSFSADSDEEQNGNSASSSVSPSVEKIADIWKQVVSAVQTRYPKLVEKYGIAELSTEKLTKLLAHLEAESAVLPSVDHINAADCCALPPGLISIAKQRGIRLLAHHDPEEMLSQDALNRVLEAYNPELSSSSYRWNWILRLTYIAHDRQVLAGNDYLVSVSPSE
SIO_010081: AWJ20_3846
subclass of: SO_0000673
so part of: AWJ20_3846
location: 442775..443782
location: region:442775-443782:1
so has part: feature:442775-443782:1:exon

XP_018733527.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:442775-443782:1:exon

AWJ20_3847
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: BXI1
locus tag: AWJ20_3847
so part of: sequence
location: <447425..>448225
location: region:447425-448225:1
so has part: feature:447425-448225:1:exon
subclass of: SO_0000010

30035913
type: Gene
SIO_000068: ncbigene

position:447425:1
position: 447425
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:448225:1
position: 448225
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:447425-448225:1:exon

AWJ20_3847
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: BXI1
locus tag: AWJ20_3847
product: Bxi1p
transcript id: XM_018880881.1
SIO_010081: AWJ20_3847
subclass of: SO_0000673
so part of: AWJ20_3847
location: <447425..>448225
location: region:447425-448225:1
so has part: feature:447425-448225:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:447425-448225:1:exon

AWJ20_3847
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: BXI1
locus tag: AWJ20_3847
inference: similar to AA sequence:KEGG_Orthology:K06890
note: Protein involved in apoptosis; variously described as containing a BCL-2 homology (BH3) domain or as a member of the BAX inhibitor family; reported to promote apoptosis under some conditions and to inhibit it in others; localizes to ER and vacuole; may link the unfolded protein response to apoptosis via regulation of calcium-mediated signaling; translocates to mitochondria under apoptosis-inducing conditions in a process involving Mir1p and Cor1p; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 21673967]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 21673659]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 21673967]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 21673659]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006915 - apoptotic process [Evidence IEA]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 21673659]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 21673967]; GO_process: GO:0019722 - calcium-mediated signaling [Evidence IMP] [PMID 21673967]; GO_process: GO:0030968 - endoplasmic reticulum unfolded protein response [Evidence IMP] [PMID 21673967]
codon start: 1
product: Bxi1p
translation: MSTPSAPPPQYTAPGNGAQSSEPLLVPGEAPPRRQEDDNIPDDFKYSTSVAECTLPIRHAFLRKVYTILFGQLVVTAAVGAVISQNSSVSHWVLTHIWTFYVAIFGAMGLMIGAYVKQRSYPTNMLFLGGFTLLESYCVGIISSLYDTKIVIQAVVLTLVIFGGLSLFALQTKYDFSGWQSYLGAALWGLIGFGLISIFMPYSSGVELAYSVVGALVFAGYIVVDTQLIMRRYHPEDEVAAAIALYLDIINLFLNILRILNEMNRD
SIO_010081: AWJ20_3847
subclass of: SO_0000673
so part of: AWJ20_3847
location: 447425..448225
location: region:447425-448225:1
so has part: feature:447425-448225:1:exon

XP_018733528.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:447425-448225:1:exon

AWJ20_3848
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PHO11
locus tag: AWJ20_3848
so part of: sequence
location: complement(<448477..>450570)
location: region:448477-450570:-1
so has part: feature:448477-450570:-1:exon
subclass of: SO_0000010

30035914
type: Gene
SIO_000068: ncbigene

position:448477:-1
position: 448477
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:450570:-1
position: 450570
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:448477-450570:-1:exon

AWJ20_3848
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PHO11
locus tag: AWJ20_3848
product: acid phosphatase PHO11
transcript id: XM_018880882.1
SIO_010081: AWJ20_3848
subclass of: SO_0000673
so part of: AWJ20_3848
location: complement(<448477..>450570)
location: region:448477-450570:-1
so has part: feature:448477-450570:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:448477-450570:-1:exon

AWJ20_3848
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PHO11
locus tag: AWJ20_3848
inference: similar to AA sequence:KEGG_Orthology:K01078
codon start: 1
product: acid phosphatase PHO11
translation: MTDHQSIENEEQSAFLARSSLDDGLDLDHELDHEFELDPSSTGSPYDEESSIETGDNGIAKVGSRNNASSLDTTGSSGASITKGRKPKVNFDLDETYVQYDEAYKGIKGRSKTTTNSKGNISRHFDYSSSVNPIPPSPTSHRRGNNRLSSRKSSKLTTKLIIMLVLPALVLFILFFAVSSSASNPPRNASPVVAPTGLTYPSGFNMKQNWGSASPYFDTGVSYTGIDSTKAFERSARCSLRQSHVLHRHAERYPTDGMTARLSATAEKLMKMPPPPSKQFEWISKWNYTLGADLLTARGVGTEFKSGSDYWGSHGVALYNATSNGNNELFYSPKLNVYENGTSRPVPVLRATTQSRIETSARAWAAGFFGVYGGQIYNVVENSHDGSKNNNGDGTGWNSPVKPDSPVNYVSDAGIYKLVLQAENHGNNNTLASYYACPNDNSDNIGKEKKYAWIDNYLAPAAVRLNKVFPDYGNMTAGEVYDLQNFCAFETAAYGSSRFCELFTESEWRGFEYAGDLSFYYDSSFGSPVGASMGAGYLVELLARLQNKSVIAELNKGVNLTLDNDPATFPLGQPFYLDMTHDSIIISVLTAIGFDFINKELPTDKLLAPRQFVASRLVPFGARLIFDILECDDSTSSDSPPDLNYYVRVSLNSRVLPLGSLHDCPQSEDGFCPLDKFASSLQRQISSIDFVKACYGK
SIO_010081: AWJ20_3848
subclass of: SO_0000673
so part of: AWJ20_3848
location: complement(448477..450570)
location: region:448477-450570:-1
so has part: feature:448477-450570:-1:exon

XP_018733529.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:448477-450570:-1:exon

AWJ20_3849
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3849
so part of: sequence
location: complement(<451234..>452847)
location: region:451234-452847:-1
so has part: feature:451234-452847:-1:exon
subclass of: SO_0000010

30035915
type: Gene
SIO_000068: ncbigene

position:451234:-1
position: 451234
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:452847:-1
position: 452847
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:451234-452847:-1:exon

AWJ20_3849
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3849
product: hypothetical protein
transcript id: XM_018880883.1
SIO_010081: AWJ20_3849
subclass of: SO_0000673
so part of: AWJ20_3849
location: complement(<451234..>452847)
location: region:451234-452847:-1
so has part: feature:451234-452847:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:451234-452847:-1:exon

AWJ20_3849
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3849
inference: similar to AA sequence:KEGG_Orthology:K13076
codon start: 1
product: hypothetical protein
translation: MKDDLLSREDVEVLIAEGNLVVIYHDRALKLNNWITKHPGGDKAVLHMVGRDASDEIDVYHSDKTLKSLPAFQIGRVQLPWRNFLPPIQGGTFRTRAELDSDEGVSLSDPDQRIPRWEKTDMKKSTRWTKQEQRTHEIIENFDRKLVESDREKYPPVDLDTQTNIISKFRDLHKELREEGFFQCNYWGYVREASRISTLFILARVFFTWRYQSYGTIWLTLSAICLGLAWHQLTFIAHDAGHLGITHDYQIDNIVGVIIADYIGGLSIGWWKRNHNVHHFVTNDPVHDPDIQHLPFFAVSSKFFGNIKSTYYDRVLDYDIFAKTLLKVQNYMYYPILCFGRFNLYRLSWEYLILGLGPRKGKGAWLRYFELVGMAFFFYWFFYRVVTCSLHSASERWLYVMVSHIVTMPLHVQITLSHFGMSTSDLGIDESFAQRQIRTTMDVDCPPWLDYIHGGLQFQAIHHLFPRMPRHNLRAAQPKVIKFCDDLGLHYTIYGFTKGNKVVISKLADVAKQARILADCNAFCQKEMLSELGIHKT
SIO_010081: AWJ20_3849
subclass of: SO_0000673
so part of: AWJ20_3849
location: complement(451234..452847)
location: region:451234-452847:-1
so has part: feature:451234-452847:-1:exon

XP_018733530.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:451234-452847:-1:exon

AWJ20_3850
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3850
so part of: sequence
location: complement(<453209..>455224)
location: region:453209-455224:-1
so has part: feature:453209-455224:-1:exon
subclass of: SO_0000010

30035917
type: Gene
SIO_000068: ncbigene

position:453209:-1
position: 453209
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:455224:-1
position: 455224
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:453209-455224:-1:exon

AWJ20_3850
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3850
product: Peptide-N4-(N-acetyl-beta- glucosaminyl)asparagineamidase A
transcript id: XM_018880885.1
SIO_010081: AWJ20_3850
subclass of: SO_0000673
so part of: AWJ20_3850
location: complement(<453209..>455224)
location: region:453209-455224:-1
so has part: feature:453209-455224:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:453209-455224:-1:exon

AWJ20_3850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3850
codon start: 1
product: Peptide-N4-(N-acetyl-beta- glucosaminyl)asparagineamidase A
translation: MSISAWFTGNTATGYIALSDDNDRNRINTRKRNLALAAAIAVGVVIITVGMFHDYRWHDGIYRPLPGRGRHGGIHHGGSHHGGISNLWSKQLLLSFDDNSDIGKPAHGSQKVEDVFQVYAPPEDIGELVLNKTLIDNYVFDNSYGKPFVVSYTAPDQEFTHVRLTLNATTYGRQFDRLAQVYLGGSEIWRTSTAEPGHRNISFSYVKDVSKYASLFKTSDIDFTFALNNIVDEVYTGPITVSLSAQYFNVPETRSTSVAELLKKDVTSPDQVIAIAPPTGLSWSAPSQKISTKLPALPKDAARVVVDVFASGNADEEFWYSHLLDPYSDWFPNGANEFGKHGPTRLVEVHINGVLAGVAIPFPVIYTGGYSPPLWSKIVGTNTYDVPSYQIDITPFLPYLWSESGSAISLRVVNGDKSESAKTLISEDWIVSANVLVWQVPGVQGSGVSDIPKNKDSLTRIVSPRYDSRVSQIIAFSDSISTSARLEYIGTDGEKEDLTVGWQQKLALSNVQSVSNGGDKHEIVFSSSTANKLVVDDDFEAVNAQFKESHGLVLNLKYDSFEDSFKISYVRGVSTNDALGLTSAGQNGTSAFAFTGPRQVSGHGDLETNYTRQSYITDEKYHRHVRAANGSVLFDHVDCSKPGLYSVDSVSPIESLIQLDGLDLSFFASNE
SIO_010081: AWJ20_3850
subclass of: SO_0000673
so part of: AWJ20_3850
location: complement(453209..455224)
location: region:453209-455224:-1
so has part: feature:453209-455224:-1:exon

XP_018733531.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:453209-455224:-1:exon

AWJ20_3851
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: URA3
locus tag: AWJ20_3851
so part of: sequence
location: <455956..>456753
location: region:455956-456753:1
so has part: feature:455956-456753:1:exon
subclass of: SO_0000010

30035918
type: Gene
SIO_000068: ncbigene

position:455956:1
position: 455956
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:456753:1
position: 456753
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:455956-456753:1:exon

AWJ20_3851
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: URA3
locus tag: AWJ20_3851
product: orotidine-5'-phosphate decarboxylase
transcript id: XM_018880886.1
SIO_010081: AWJ20_3851
subclass of: SO_0000673
so part of: AWJ20_3851
location: <455956..>456753
location: region:455956-456753:1
so has part: feature:455956-456753:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:455956-456753:1:exon

AWJ20_3851
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: URA3
locus tag: AWJ20_3851
inference: similar to AA sequence:KEGG_Orthology:K01591
note: Orotidine-5'-phosphate (OMP) decarboxylase; catalyzes the sixth enzymatic step in the de novo biosynthesis of pyrimidines, converting OMP into uridine monophosphate (UMP); converts 5-FOA into 5-fluorouracil, a toxic compound; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 18812321]; GO_function: GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0004590 - orotidine-5'-phosphate decarboxylase activity [Evidence IEA,IEA]; GO_function: GO:0004590 - orotidine-5'-phosphate decarboxylase activity [Evidence IDA] [PMID 2061334]; GO_function: GO:0004590 - orotidine-5'-phosphate decarboxylase activity [Evidence IMP] [PMID 4550660]; GO_function: GO:0004590 - orotidine-5'-phosphate decarboxylase activity [Evidence IMP] [PMID 5651325]; GO_process: GO:0044205 - 'de novo' UMP biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IEA]; GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IMP] [PMID 4550660]; GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IMP] [PMID 5651325]; GO_process: GO:0006222 - UMP biosynthetic process [Evidence IDA] [PMID 2061334]; GO_process: GO:0006222 - UMP biosynthetic process [Evidence IMP] [PMID 4550660]; GO_process: GO:0006222 - UMP biosynthetic process [Evidence IMP] [PMID 5651325]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]
codon start: 1
product: orotidine-5'-phosphate decarboxylase
translation: MSNTTLSYEARAAKHPSAVASKLLKLMAEKKTNLCASLDVRTTKEFLDLLEKVGPYIAVVKSHIDIIDDFTYEGTIVPLLALAKKHNFLIFEDRKFADIGSTVKAQYSGGVYKIAKWSDITNAHSVPGAGIVNGLEEAAKETTSEERGLLMLAELSTKGSLATGEYTAKTVEIARQNSQFVFGFIAQSRMPEQGDEDWLILTPGVGLDDKGDGLGQQYRTVDQVVSTGTDVIIVGRGLFGKGRDPVAESKRYRDAGWAAYEKRLA
SIO_010081: AWJ20_3851
subclass of: SO_0000673
so part of: AWJ20_3851
location: 455956..456753
location: region:455956-456753:1
so has part: feature:455956-456753:1:exon

XP_018733532.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:455956-456753:1:exon

AWJ20_3852
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: DBP3
locus tag: AWJ20_3852
so part of: sequence
location: complement(<458453..>460072)
location: region:458453-460072:-1
so has part: feature:458453-460072:-1:exon
subclass of: SO_0000010

30035919
type: Gene
SIO_000068: ncbigene

position:458453:-1
position: 458453
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:460072:-1
position: 460072
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:458453-460072:-1:exon

AWJ20_3852
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: DBP3
locus tag: AWJ20_3852
product: RNA-dependent ATPase DBP3
transcript id: XM_018880887.1
SIO_010081: AWJ20_3852
subclass of: SO_0000673
so part of: AWJ20_3852
location: complement(<458453..>460072)
location: region:458453-460072:-1
so has part: feature:458453-460072:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:458453-460072:-1:exon

AWJ20_3852
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: DBP3
locus tag: AWJ20_3852
inference: similar to AA sequence:KEGG_Orthology:K14811
note: RNA-Dependent ATPase, member of DExD/H-box family; involved in cleavage of site A3 within the ITS1 spacer during rRNA processing; not essential for growth, but deletion causes severe slow-growth phenotype; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 9032262]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 22083961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA] [PMID 23153376]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 18975973]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 23153376]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000464 - endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9032262]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]
codon start: 1
product: RNA-dependent ATPase DBP3
translation: MSTEKEIKSSKRSLEEAEKNESTKKLKVKSDKKDHKEEKNKKEKKEKKDKKEKKEKKDKKDKKEKKEKKEKKDKEEKKESKSDDTVSSEQTAVPAAAAAAAAPSSAEVTKFLADNSVKIEDDSNSNIQPCLSFDSLPVESKIISILKKFPKPSPIQAASWPFLLAGRDVVGVAETGSGKTFAFSVPVVNHIIQEKKKGVRALVVSPTRELAMQIYDSLVTLTNVTDISAVCVYGGVPKEEQRQGLKKASIVIATPGRLKDLIEEGSADLSKVEYLVLDEADRMLEKGFEEDIKSIVSNTNSDGRQTIMFTATWPPEVRKLASTFMNNAVKVYIGERDELAANKRITQLVEVIDPFRKEQRLLQLLKEHQSGAKKDDKILVFALYKKEATRVERLLQNRGFALAAIHGDLGQAQRTKALEDFKTGRSKILLATDVAARGLDIPAVKVVINLTFPLTAEDYVHRIGRTGRAGQTGLAITLFTEQEKHLSGALINVLRGANQPVPDELLKFGSHTKKKEHSAYGAFFKDVDSTKKATKVKFD
SIO_010081: AWJ20_3852
subclass of: SO_0000673
so part of: AWJ20_3852
location: complement(458453..460072)
location: region:458453-460072:-1
so has part: feature:458453-460072:-1:exon

XP_018733533.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:458453-460072:-1:exon

AWJ20_3853
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ERO1
locus tag: AWJ20_3853
so part of: sequence
location: <461851..>463677
location: region:461851-463677:1
so has part: feature:461851-463677:1:exon
subclass of: SO_0000010

30035920
type: Gene
SIO_000068: ncbigene

position:461851:1
position: 461851
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:463677:1
position: 463677
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:461851-463677:1:exon

AWJ20_3853
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ERO1
locus tag: AWJ20_3853
product: Ero1p
transcript id: XM_018880888.1
SIO_010081: AWJ20_3853
subclass of: SO_0000673
so part of: AWJ20_3853
location: <461851..>463677
location: region:461851-463677:1
so has part: feature:461851-463677:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:461851-463677:1:exon

AWJ20_3853
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ERO1
locus tag: AWJ20_3853
note: Thiol oxidase required for oxidative protein folding in the ER; essential for maintaining proper redox balance in ER; feedback regulation of Ero1p occurs via reduction and oxidation of Ero1p regulatory bonds; reduced Pdi1p activates Ero1p by direct reduction of Ero1p regulatory bonds; depletion of thiol substrates and accumulation of oxidized Pdi1p results in inactivation of Ero1p by both Pdi1p-mediated oxidation and autonomous oxidation of Ero1p regulatory bonds; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 9659914]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016671 - oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [Evidence IEA]; GO_function: GO:0003756 - protein disulfide isomerase activity [Evidence IEA]; GO_function: GO:0003756 - protein disulfide isomerase activity [Evidence IMP] [PMID 10982384]; GO_function: GO:0016972 - thiol oxidase activity [Evidence IDA] [PMID 16407158]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IGI] [PMID 11584268]; GO_process: GO:0006457 - protein folding [Evidence IMP] [PMID 9659913]
codon start: 1
product: Ero1p
translation: MSKIFYLTLLATVLASSSPFPSPPLEASVASQTVYDFLPIASDSPVKDTLGGATYQQVEDTNFRLRPVLKELTKTDYFKYYKVDLSPELCPFNDDELGMCGNRACAVDVIDDESEVPEFWRSQYLGKLAKDSVTTDRLWSPDDDAVASKLCRANGVSVGHEYYNVLPSPSPPSKDDYLDSELEDTNYCYPEDESLSGPGTYVSLPDNPERFTGYGGPHANKVWRAVYQENCFGYFGDSNQDSGTSNAVSSGDGFSAGQLQPSLPAAGSLLSSVLMDSNRYERQEVGGESGRQALNAEKQCVEQRLFYRILSGLQSSVSSHLCYEYLNQTTGEWVPNLDCFMSRVGNHQERLENLYFNYALVSRAVSKLRNYIDDLHFNNQDASADQATRRQLLRLIKSSSPVTYSRAQANDTNTPTSASSSQQKLLLFNETAIFSSPEGRALKSEFRKRVRNVSALMSCVGCDRCRLWGKLQTAGYGTALKLLFELPENPADDPELCSTVMSTFRRSELVALINTLDRLSKSIEAVTYFRNELQSQAVEAEKLAERSEFQQAWDSELEGAWTALKFVFRSYVELPKNLWTLFIHYSAIYWNRFIGRDALTAQYYHLDL
SIO_010081: AWJ20_3853
subclass of: SO_0000673
so part of: AWJ20_3853
location: 461851..463677
location: region:461851-463677:1
so has part: feature:461851-463677:1:exon

XP_018733534.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:461851-463677:1:exon

AWJ20_3854
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RRT12
locus tag: AWJ20_3854
so part of: sequence
location: complement(<464898..>465311)
location: region:464898-465311:-1
so has part: feature:464898-465311:-1:exon
subclass of: SO_0000010

30035921
type: Gene
SIO_000068: ncbigene

position:464898:-1
position: 464898
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:465311:-1
position: 465311
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:464898-465311:-1:exon

AWJ20_3854
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RRT12
locus tag: AWJ20_3854
product: Rrt12p
transcript id: XM_018880889.1
SIO_010081: AWJ20_3854
subclass of: SO_0000673
so part of: AWJ20_3854
location: complement(<464898..>465311)
location: region:464898-465311:-1
so has part: feature:464898-465311:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:464898-465311:-1:exon

AWJ20_3854
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RRT12
locus tag: AWJ20_3854
note: Probable subtilisin-family protease; role in formation of the dityrosine layer of spore walls; localizes to the spore wall and also the nuclear envelope and ER region in mature spores; GO_component: GO:0005619 - ascospore wall [Evidence IDA] [PMID 19779569]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 19779569]; GO_component: GO:0031160 - spore wall [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0042802 - identical protein binding [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IBA,IEA]; GO_function: GO:0008236 - serine-type peptidase activity [Evidence IEA]; GO_function: GO:0008236 - serine-type peptidase activity [Evidence ISS] [PMID 10592175]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IMP] [PMID 19779569]; GO_process: GO:0043086 - negative regulation of catalytic activity [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IBA,IEA,IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]
codon start: 1
product: Rrt12p
translation: MSLGTPKNNILNRAVQQLVDMGVPVVVAAGNSDSNACRFSPSSAQGAFVVGALDDRLDTAATFTNWGECVDAFASGVNVESISIFNNSPVKYSGTSVSSPIAAGLIAYFMGMGDSGEVATQRVSKLISIILSRLGPN
SIO_010081: AWJ20_3854
subclass of: SO_0000673
so part of: AWJ20_3854
location: complement(464898..465311)
location: region:464898-465311:-1
so has part: feature:464898-465311:-1:exon

XP_018733535.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:464898-465311:-1:exon

AWJ20_3855
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RRD1
locus tag: AWJ20_3855
so part of: sequence
location: complement(<466442..>467893)
location: region:466442-467893:-1
so has part: feature:466442-467893:-1:exon
subclass of: SO_0000010

30035922
type: Gene
SIO_000068: ncbigene

position:466442:-1
position: 466442
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:467893:-1
position: 467893
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:466442-467893:-1:exon

AWJ20_3855
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RRD1
locus tag: AWJ20_3855
product: peptidylprolyl isomerase RRD1
transcript id: XM_018880890.1
SIO_010081: AWJ20_3855
subclass of: SO_0000673
so part of: AWJ20_3855
location: complement(<466442..>467893)
location: region:466442-467893:-1
so has part: feature:466442-467893:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:466442-467893:-1:exon

AWJ20_3855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RRD1
locus tag: AWJ20_3855
inference: similar to AA sequence:KEGG_Orthology:K17605
note: Peptidyl-prolyl cis/trans-isomerase; activator of the phosphotyrosyl phosphatase activity of PP2A; involved in G1 phase progression, microtubule dynamics, bud morphogenesis and DNA repair; required for rapid reduction of Sgs1p levels in response to rapamycin; subunit of the Tap42p-Sit4p-Rrd1p complex; protein increases in abundance and relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15150670]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 21129186]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15150670]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA,IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IDA] [PMID 16380387]; GO_function: GO:0019211 - phosphatase activator activity [Evidence IEA]; GO_function: GO:0008601 - protein phosphatase type 2A regulator activity [Evidence IMP] [PMID 12952889]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 15150670]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 9705277]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IPI] [PMID 11134337]; GO_process: GO:0030472 - mitotic spindle organization in nucleus [Evidence IMP] [PMID 11262194]; GO_process: GO:0043085 - positive regulation of catalytic activity [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA,IEA]; GO_process: GO:0043618 - regulation of transcription from RNA polymerase II promoter in response to stress [Evidence IMP,IPI] [PMID 21129186]; GO_process: GO:0006970 - response to osmotic stress [Evidence IMP] [PMID 10660069]
codon start: 1
product: peptidylprolyl isomerase RRD1
translation: MTENIYNGSIVSGTIGTPGSGGSGSSEASVSSTLPSGTGKSQPLLAPEDPFGTGETYSVEFPIHPSSYSTPGKKIHDQSDLIYFQQSIAYNRIQNLITSISQAVIQKFPADINSSSIHPVFKSIIEILQTLSKWCDEIEPVIGPRRFGNIAFRQWHTVLENRSGQLLTEKLAEPLAFSTIGDEMSDKVSAENSPLTELIPYFQGSFGSKQRLDFGTGHELSFLAFIGGLILLGVIDQPSGEDILLVFETYFEVIRKLVLRYTLEPAGSHGVWGLDDHFHLPYILGSAQLVDPQSNGIPKPSSIISKDVPTPRSVLDKASVSKYARTNLYFKAIDFVYQVKRGPFYEHSPILYDITGVPTWNKIYRGMIKMYNAEVLGKFPVVQHFIFGSALYPWKHINGNGLKSHSGEEEKAAPRKDASAVPSMVSSVMPLSATVSGVRPRASNAPRTSINPITGSSIGEPSTGSPTGGGNIPGPTKASWAKK
SIO_010081: AWJ20_3855
subclass of: SO_0000673
so part of: AWJ20_3855
location: complement(466442..467893)
location: region:466442-467893:-1
so has part: feature:466442-467893:-1:exon

XP_018733536.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:466442-467893:-1:exon

AWJ20_3856
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: NUP192
locus tag: AWJ20_3856
so part of: sequence
location: <468646..>473577
location: region:468646-473577:1
so has part: feature:468646-473577:1:exon
subclass of: SO_0000010

30035923
type: Gene
SIO_000068: ncbigene

position:468646:1
position: 468646
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:473577:1
position: 473577
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:468646-473577:1:exon

AWJ20_3856
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: NUP192
locus tag: AWJ20_3856
product: Nup192p
transcript id: XM_018880891.1
SIO_010081: AWJ20_3856
subclass of: SO_0000673
so part of: AWJ20_3856
location: <468646..>473577
location: region:468646-473577:1
so has part: feature:468646-473577:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:468646-473577:1:exon

AWJ20_3856
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: NUP192
locus tag: AWJ20_3856
inference: similar to AA sequence:KEGG_Orthology:K14310
note: Essential subunit of the inner ring of the nuclear pore complex (NPC); contributes to nucleocytoplasmic transport; homologous to human NUP205; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0044611 - nuclear pore inner ring [Evidence IDA] [PMID 18046406]; GO_component: GO:0044615 - nuclear pore nuclear basket [Evidence IDA] [PMID 10428845]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IMP] [PMID 10428845]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0006999 - nuclear pore organization [Evidence IMP] [PMID 10428845]; GO_process: GO:0006999 - nuclear pore organization [Evidence IMP] [PMID 11121302]; GO_process: GO:0006913 - nucleocytoplasmic transport [Evidence IC] [PMID 10684247]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Nup192p
translation: MLSEELNIDEVVAAEMVYNSSDDLNRLDMSPLQAGVALFHVRRQYILDLIRYFLVESGSDDRISDEFRKIVKSWSANGNDAALDSILEALKSVEEAYAELNEKEKRGQFLGQMNNAEFVQLLKLRRDFLLREHDYLGQILCGLVQNRMVDAKGFAKLISKVQTLSEYDTMFVHYIPSLLLYMSTFDPALTGTGYSVDFEEAYNGYKELSGDAQGWKLDYWKGALSLAMLSGFSGCCRADTGDENGSGTGSNLIKYNISYELSILDPTKQAIDIGGIEFLMILAANTSQTLSKKPHFYDYRPSVQNKVPSLKRLGDFSDEFLALLLQELERLVESVVTNLADILKEMRLNEEDAFLSLTSVNNEFDHEEVDMPGADLERFFIFVSYLYSDRPDASINFWLDPESSLYGFTTWARQSHISFMAATLCDMLASLASGKECANAVYQLLKDDSDSEENGEMGTKINAAAKGFSMGLAKLDNGNNNMLKRMNNTSSSYRLTWDVIFDALDYYAKQLQPHSAAPSSSLSMGGLGAANGRQNALVLVTDMPELDDDIVLLLSAYFRLITVTISNDPEARLEFTTAVGGKYISTLFELLHSQTSLYGSILMTLAGFAKTDNEQIRYALWTAVDNWLFNSTVYSPDGTVIAPSLPPRERLAQLFRSSSDIVGLITLLEALMSPLPQSARQGFPFPQDLGSKYRYPGIWPYVDFIINEVFLSSASPTFTQDERLFIQLPCLLFIQYSLELLDPDVTRLSSTLGINPDIVVRSPSFLSYLYNHPSAPTMSHLFSSKIYSILISIASAGIDEIGELGPDEPLVQAVVHSIRIMNDILDLQQIFLDVIVKEFKHGSSANGPAVDGVPTVPPLQIVTHGLKAFEDVLLFNLPTVIHLALYIGSSNIELASRSLQLLQRLSLSSQFVSTVSTDARVKKNRLLSTLETADESNRIKEGFLEQLERPVDSYVEFNNSGSLPAIEIKLALLDFIICNLKTKSREPTTAHFLLGFKTTGDGKLDLDDGRCGIATGVSSFNSILSLLQYGIENISGTDVEYGASKLSNACMEIILLLVQDPLSSQPILQLLRDTDFALSSLMAEPVVGQDSLWNGQPYESTAAFSTIVSFFNHRSSLLEYVSLEIHESAELGSLSLVLRYVDSLVNLDVTKKLSVNHQDSEHSAAMLSLLDVLEMPSRDQEPLQESSLEFFGSSVLNQIFSILGNSIDPYANDLDTDNESAMSELNHLLKLKGLEFVANGKIQSLEDGVFKAAVEDIVSFMYNSRTGGLIRDTQLKCLRSWSKLALVLVNDANVPSTKLITFILEIFQTLIPKLVDYSSSDIAFAEVLASLLVSLQHIYQNEAKVGHGNSELNTAGYDRSHSLFRASLESIQTPLATPELRADLYIICYQYLKSTLDSPQAQQVIQVVRAAGDRLLETICGDALSGEGVTRLVALIFLEVLFSLSSKTRSTFVQDGLVRYNLLLLLVKSIQRTDHEISNRDSLSPSELFFELKVFNATLCFLLQVARTRSGASQLIQSGLFDILDGCQFLNIDLDVGIEISSPIDHRAGAVSDLKISFYEILVPVFQILCAVLLSMGAENEPVITRVRRFLEGHQQLVVAIMKKDMLQSSRPPSGDESSEVGLDDLVKLTVLLVSLTEFVPNL
SIO_010081: AWJ20_3856
subclass of: SO_0000673
so part of: AWJ20_3856
location: 468646..473577
location: region:468646-473577:1
so has part: feature:468646-473577:1:exon

XP_018733537.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:468646-473577:1:exon

AWJ20_3857
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: NSP1
locus tag: AWJ20_3857
so part of: sequence
location: complement(<473749..>476502)
location: region:473749-476502:-1
so has part: feature:473749-476502:-1:exon
subclass of: SO_0000010

30035924
type: Gene
SIO_000068: ncbigene

position:473749:-1
position: 473749
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:476502:-1
position: 476502
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:473749-476502:-1:exon

AWJ20_3857
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: NSP1
locus tag: AWJ20_3857
product: FG-nucleoporin NSP1
transcript id: XM_018880892.1
SIO_010081: AWJ20_3857
subclass of: SO_0000673
so part of: AWJ20_3857
location: complement(join(<473749..475815,476488..>476502))
location: region:473749-476502:-1
so has part: feature:476488-476502:-1:exon
so has part: feature:473749-475815:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:476488-476502:-1:exon

position:476488:-1
position: 476488
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:473749-475815:-1:exon

position:475815:-1
position: 475815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

AWJ20_3857
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: NSP1
locus tag: AWJ20_3857
inference: similar to AA sequence:KEGG_Orthology:K14306
codon start: 1
product: FG-nucleoporin NSP1
translation: MLRQTPFAFGSSTTPAGNPSGGNAFSFGNASNNTASGTTASTGTGLFGTNTTGTGLFGSKPAATTTAPSGTGLFGATAGSTNSGTGSTGLFGGASTGTAAKPLFGAATSTTPATSGTGLFGASTNNNASSTPASGTPSLFGSSTTGTSNASKPLFGSVATSTTSSEASKPLFGAATATSQPAPSLFGGAASSTTTNTTSSGLTKPLFGTAASTGTSTEPAKPLFGAATTTSATTEPAKPLFGAATTSTSSSQPAKPLFGAATTSTSSSQPAKPLFGAAATGTSSEPAKPLFGAATTGTSSEPAKPLFGAAATGASTEPAKPLFGAAASTATTSAEPAKPLFGAASTSTSTPLFGAKPATSEPAKPLFGAATTNTATSSKPAETAKPLFGAATTTSTSTTEPAKPLFGAPAATSSSTTNTTSSEPAKPLFGGATSTAKTTEPAKPLFGAAPTTTSTTTATTSAPTTSGTKAASASSTTAPATKPEEIAPSLYLKNKSFEDIIAKWTSTLAQNTADFQSQAISIAGWDRVLVENGERISEVFSEVVLAEQNQGKVDQMLQYISRQQDDLETLLEGYEKQASHFLSDMAGPEGMQPVDQEREKAYRVAEDLNEKLESMDSNLASVIEEINKVSSDLTRAKDDDALTQIVKILNSHLSSLRWIDSNTSLLQEKLDKIHTLESQTRDHLNESQRFGAY
SIO_010081: AWJ20_3857
subclass of: SO_0000673
so part of: AWJ20_3857
location: complement(join(473749..475815,476488..476502))
location: region:473749-476502:-1
so has part: feature:476488-476502:-1:exon
so has part: feature:473749-475815:-1:exon

XP_018733538.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:476488-476502:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:473749-475815:-1:exon

AWJ20_3858
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: GCV2
locus tag: AWJ20_3858
so part of: sequence
location: <477310..>480333
location: region:477310-480333:1
so has part: feature:477310-480333:1:exon
subclass of: SO_0000010

30035925
type: Gene
SIO_000068: ncbigene

position:477310:1
position: 477310
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:480333:1
position: 480333
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:477310-480333:1:exon

AWJ20_3858
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: GCV2
locus tag: AWJ20_3858
product: glycine decarboxylase subunit P
transcript id: XM_018880893.1
SIO_010081: AWJ20_3858
subclass of: SO_0000673
so part of: AWJ20_3858
location: <477310..>480333
location: region:477310-480333:1
so has part: feature:477310-480333:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:477310-480333:1:exon

AWJ20_3858
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: GCV2
locus tag: AWJ20_3858
inference: similar to AA sequence:KEGG_Orthology:K00281
note: P subunit of the mitochondrial glycine decarboxylase complex; glycine decarboxylase is required for the catabolism of glycine to 5,10-methylene-THF; expression is regulated by levels of 5,10-methylene-THF in the cytoplasm; GO_component: GO:0005960 - glycine cleavage complex [Evidence ISS] [PMID 8830251]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004375 - glycine dehydrogenase (decarboxylating) activity [Evidence IEA,IEA]; GO_function: GO:0004375 - glycine dehydrogenase (decarboxylating) activity [Evidence IDA] [PMID 320197]; GO_function: GO:0004375 - glycine dehydrogenase (decarboxylating) activity [Evidence IDA] [PMID 8830251]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_process: GO:0006546 - glycine catabolic process [Evidence IEA]; GO_process: GO:0019464 - glycine decarboxylation via glycine cleavage system [Evidence IEP,IMP] [PMID 8830251]; GO_process: GO:0006544 - glycine metabolic process [Evidence IEA]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IGI] [PMID 10871621]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]
codon start: 1
product: glycine decarboxylase subunit P
translation: MRFLIRSSQRLVAGRYAVNTTSRVFTRGALIGSRSYSSQIPSSSPLEPLDTYLRRHNGSSSPKSIETLLDKVGYKSVDSFVESVVPDGILSRRPLQISPENGLSESQLTSRLREIASENKLYRSFIGRGYYGTIVPPVIQRNILECPEWYTSYTPYQPEIAQGRLESLMNFQTLVADLTGMSVANASLLDEATAGAEAMAMGFHALRGKRKVYYVDENVHSQTISVLKTRAKTLGIEVVIGLPKDEAEFKSSFGTLIQYPGANGNIESPEYYQQLSDKVHGSGGVLAVATDLLALTVLKAPSSFGADIVFGNSQRFGVPFGYGGPHAAFFAVADSEKRKMPGRLIGRSKDRLGNPAFRLALQTREQHIRREKATSNICTAQALLANMAAMYAVYHGPEGLKNIANRVYSLTTYLASQIESSSSHSLVNNKWFDTLTVKLGGVTADEFLAKARSEYQINLFKVDDSSVSVALDETVTAKDVSDLVSLFTGSTVGLTTLSAADVQYTSVPEDLARTGKILQFAVFNTHHSETELLRYIHHLQSKDLSLANSMIPLGSCTMKLNATVQMAPVTWPEFGQIHPFAPIDQAKGYQTLVSELEADLADITGFDATSLQPNSGAQGEFAGLKVIRAYLDSIGQGHRDICIIPVSAHGTNPASAAMAGFKVVSVKCTNNGELDLVDLEAKAEKYKDKLAATMITYPSTYGVFEPGVKRAIEIVHSHGGQVYMDGANMNAQIGLTSPGEIGADVCHLNLHKTFCIPHGGGGPGVGPICVKSHLQPFLPSHDTVAVTSASSDGRAVDSVSAAPYGSASILPISWAYIKLMGASGLKKATELALLNANYMKARVGEHFPVAYTNAEGRCAHEFIVDLRGFKSTSGIEAIDVAKRLQDYGFHAPTMSWPVPNTLMIEPTESESIAELDRFCDALISIRKEIADIEEGRVPRENNVLKNAPHSQQDLLTSEWDRPYTREQAAYPLPYLREAKFWPSVTRLDDNYGDLNLFCSCDPVEAIE
SIO_010081: AWJ20_3858
subclass of: SO_0000673
so part of: AWJ20_3858
location: 477310..480333
location: region:477310-480333:1
so has part: feature:477310-480333:1:exon

XP_018733539.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:477310-480333:1:exon

AWJ20_3859
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TRM7
locus tag: AWJ20_3859
so part of: sequence
location: <482919..>483815
location: region:482919-483815:1
so has part: feature:482919-483815:1:exon
subclass of: SO_0000010

30035926
type: Gene
SIO_000068: ncbigene

position:482919:1
position: 482919
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:483815:1
position: 483815
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:482919-483815:1:exon

AWJ20_3859
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TRM7
locus tag: AWJ20_3859
product: Trm7p
transcript id: XM_018880894.1
SIO_010081: AWJ20_3859
subclass of: SO_0000673
so part of: AWJ20_3859
location: <482919..>483815
location: region:482919-483815:1
so has part: feature:482919-483815:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:482919-483815:1:exon

AWJ20_3859
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TRM7
locus tag: AWJ20_3859
inference: similar to AA sequence:KEGG_Orthology:K14864
note: 2'-O-ribose methyltransferase; methylates the 2'-O-ribose of tRNA-Phe, tRNA-Trp, and tRNA-Leu at positions C32 and N34 of the tRNA anticodon loop; crucial biological role likely modification of tRNA-Phe; interacts with Trm732p and Rtt10p in 2'-O-methylation of C32 and N34 substrate tRNAs, respectively; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11927565]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0008175 - tRNA methyltransferase activity [Evidence IEA]; GO_function: GO:0008175 - tRNA methyltransferase activity [Evidence IDA] [PMID 11927565]; GO_function: GO:0008175 - tRNA methyltransferase activity [Evidence IMP,ISS] [PMID 9917067]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0001510 - RNA methylation [Evidence IEA]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IMP] [PMID 11927565]; GO_process: GO:0032259 - methylation [Evidence IEA,IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IDA] [PMID 11927565]; GO_process: GO:0008033 - tRNA processing [Evidence IEA,IEA]
codon start: 1
product: Trm7p
translation: MGKSSKDKRDLYYRKAKEEGWRARSAFKLLQLDSQFHLLKGLNRVVDLCAAPGSWSQVLSRSLPEDSAKIVAVDLQPMAPIKGVTSIQADITHPKTLKRILDIFGGEPADFVCSDGAPDVTGLHDLDEYIQAQLILSALQLATALLRPGGAFVAKIFRGRDIDLMYFQLGLLFERVTCAKPRSSRGSSLEAFIVCQGYKPRPGWVPSIINEVFSTEEYFKKMGIERPLIVDLDGEYEEEERVVAPFVACGDLSEYDSDATYTIERSTARVSLDPVQSPTAPPYKTAIELKRKGIIKRT
SIO_010081: AWJ20_3859
subclass of: SO_0000673
so part of: AWJ20_3859
location: 482919..483815
location: region:482919-483815:1
so has part: feature:482919-483815:1:exon

XP_018733540.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:482919-483815:1:exon

AWJ20_3860
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: KRS1
locus tag: AWJ20_3860
so part of: sequence
location: complement(<484050..>485798)
location: region:484050-485798:-1
so has part: feature:484050-485798:-1:exon
subclass of: SO_0000010

30035928
type: Gene
SIO_000068: ncbigene

position:484050:-1
position: 484050
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:485798:-1
position: 485798
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:484050-485798:-1:exon

AWJ20_3860
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: KRS1
locus tag: AWJ20_3860
product: lysine--tRNA ligase KRS1
transcript id: XM_018880896.1
SIO_010081: AWJ20_3860
subclass of: SO_0000673
so part of: AWJ20_3860
location: complement(<484050..>485798)
location: region:484050-485798:-1
so has part: feature:484050-485798:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:484050-485798:-1:exon

AWJ20_3860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: KRS1
locus tag: AWJ20_3860
inference: similar to AA sequence:KEGG_Orthology:K04567
note: Lysyl-tRNA synthetase; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 330225]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004824 - lysine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004824 - lysine-tRNA ligase activity [Evidence IDA] [PMID 3888626]; GO_function: GO:0004824 - lysine-tRNA ligase activity [Evidence IMP] [PMID 7628447]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006430 - lysyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006430 - lysyl-tRNA aminoacylation [Evidence IDA] [PMID 3888626]; GO_process: GO:0006430 - lysyl-tRNA aminoacylation [Evidence IMP] [PMID 7628447]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]
codon start: 1
product: lysine--tRNA ligase KRS1
translation: MSDSAVKEATEQLQKTYLDEETGEQVSKTELKKRQKAREVAKKRAEKAAAAAEKAAASGEAKPKAKRDDDINPNQYFELRSTQIKALKETKAPNPYPHKFFVTIKINEFVEQYKHLKRGEELKDVEVSLAGRIHVKRESGTQLKFYVLHGEGTQVQVVAQAVGEETLPEIHDLLRRGDIVGVKGYPYRTSPKKGGEGEVSVFVKEIVLLTPSLRMLPTDHYGFKDLETRYRQRYLDLIMNNSTRDKFITRSKIISYIRKFFDSRDFVEVETPMMNQIAGGATAKPFITHHNDLNMDLFMRIAPELYLKELVVGGLERVYEIGRQFRNEGIDMTHNPEFTTCEFYQAYADVYDLMDTTELLFSEMVKEITGSYKVEYQPQGPEGKTWEIDFSRPWKRLDMIETLEEKLNVKFPPGDQLHTAETNEFLRGVLAKVGLECSPPLTNARMLDKLVGEYLEETCINPTFIFGHPQMMSPLAKYHRSRPGLCERFEVFVGTKEIANAYTELNDPFDQRDRFEEQARQKDQGDDEAQLIDETFCQALEYGLPPTGGWGCGIDRIAMFLTNSNSIKEVLLFPAMKPEVNN
SIO_010081: AWJ20_3860
subclass of: SO_0000673
so part of: AWJ20_3860
location: complement(484050..485798)
location: region:484050-485798:-1
so has part: feature:484050-485798:-1:exon

XP_018733541.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:484050-485798:-1:exon

AWJ20_3861
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TFG2
locus tag: AWJ20_3861
so part of: sequence
location: <486426..>487697
location: region:486426-487697:1
so has part: feature:486426-487697:1:exon
subclass of: SO_0000010

30035929
type: Gene
SIO_000068: ncbigene

position:486426:1
position: 486426
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:487697:1
position: 487697
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:486426-487697:1:exon

AWJ20_3861
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TFG2
locus tag: AWJ20_3861
product: transcription factor IIF subunit TFG2
transcript id: XM_018880897.1
SIO_010081: AWJ20_3861
subclass of: SO_0000673
so part of: AWJ20_3861
location: <486426..>487697
location: region:486426-487697:1
so has part: feature:486426-487697:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:486426-487697:1:exon

AWJ20_3861
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TFG2
locus tag: AWJ20_3861
inference: similar to AA sequence:KEGG_Orthology:K03139
note: TFIIF (Transcription Factor II) middle subunit; involved in both transcription initiation and elongation of RNA polymerase II; homologous to human RAP30; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005674 - transcription factor TFIIF complex [Evidence IEA]; GO_component: GO:0005674 - transcription factor TFIIF complex [Evidence IDA] [PMID 12242279]; GO_component: GO:0005674 - transcription factor TFIIF complex [Evidence IDA] [PMID 7995524]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0000991 - core RNA polymerase II binding transcription factor activity [Evidence IDA] [PMID 14749386]; GO_function: GO:0001139 - core RNA polymerase II recruiting transcription factor activity [Evidence IC] [PMID 7995524]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IC] [PMID 7995524]; GO_process: GO:0001111 - promoter clearance from RNA polymerase II promoter [Evidence IC] [PMID 7995524]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 18362165]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IDA] [PMID 1331084]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IDA] [PMID 18362165]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0001174 - transcriptional start site selection at RNA polymerase II promoter [Evidence IMP] [PMID …
codon start: 1
product: transcription factor IIF subunit TFG2
translation: MSAVDVKEEPGSPGFEDDVSLSPSSPRPSGSLDDQDVPTRDGAEEEEEIFEDSLDLDTSGASSKVWLVRLPKFLMERWKDVDKISDSELGKVRIRNQQGNEPWKVKLVLNDTPETADIPHEYDISLVKQVVDNTFVFTEKDLPKFSKPQDKETTNPTTAAANRLAALNKAKNKYNNRKNYFKNSSPGVGSDGNNGNSSDSGISSPRFVPYVKTIPKKTALVGTACHECLVMPSMKDPNYAKVVSQRKALESESSAAKVTFLNEMPGVNAATFGQSLRNKPGAFIRSTKKDIAKSSEGKATRIPKNELLDLLFKLFEEYDYWSLKGLRERTKQPETYLKEVLDTMAILIKKGPYAMKYTLKPEFKQIKGKEGSLSEYMERTGANGDADNEPNGNRNENGNASGNDEPTIEDDEDDDDVEMETIL
SIO_010081: AWJ20_3861
subclass of: SO_0000673
so part of: AWJ20_3861
location: 486426..487697
location: region:486426-487697:1
so has part: feature:486426-487697:1:exon

XP_018733542.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:486426-487697:1:exon

AWJ20_3862
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3862
so part of: sequence
location: <490103..>491218
location: region:490103-491218:1
so has part: feature:490103-491218:1:exon
subclass of: SO_0000010

30035930
type: Gene
SIO_000068: ncbigene

position:490103:1
position: 490103
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:491218:1
position: 491218
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:490103-491218:1:exon

AWJ20_3862
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3862
product: AraC family transcriptional regulator
transcript id: XM_018880898.1
SIO_010081: AWJ20_3862
subclass of: SO_0000673
so part of: AWJ20_3862
location: <490103..>491218
location: region:490103-491218:1
so has part: feature:490103-491218:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:490103-491218:1:exon

AWJ20_3862
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3862
codon start: 1
product: AraC family transcriptional regulator
translation: MSDGSSSLSSYASPVTPSIGSKSTYENSFQDIDTFRVKLLCFMDSEIKKRQFLDQIRGRCSIDLKALVEWESPLTVSQKKVEVEKLLPDGIKDDDSVSPTGAVKWVTPDFVVVPRSPKRIFCRPHCPSRKHKPLESVRLQFPKSIYSAMKDYGLAPCGRCRPLDSHYLPAQSRLLQSVELMKEKGYKAKLIDLARKAGMSKHHYDRSFSAKFELPPGKFQKMKLAQLSKDEEQIDKHSDEPCSAPGTSSTTSTGSDMEDAGDFADFESRFKDPLQIPSGELTFFSDSEPSSITEETIGTEEDFSSCEMLNSMEWFTNYTKEIVREEVNIAVFYNSNEVGCNLEQPMTFEPESDIFSQGFYDFSCDFILNYN
SIO_010081: AWJ20_3862
subclass of: SO_0000673
so part of: AWJ20_3862
location: 490103..491218
location: region:490103-491218:1
so has part: feature:490103-491218:1:exon

XP_018733543.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:490103-491218:1:exon

AWJ20_3863
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3863
so part of: sequence
location: <491935..>493533
location: region:491935-493533:1
so has part: feature:491935-493533:1:exon
subclass of: SO_0000010

30035931
type: Gene
SIO_000068: ncbigene

position:491935:1
position: 491935
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:493533:1
position: 493533
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:491935-493533:1:exon

AWJ20_3863
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3863
product: hypothetical protein
transcript id: XM_018880899.1
SIO_010081: AWJ20_3863
subclass of: SO_0000673
so part of: AWJ20_3863
location: <491935..>493533
location: region:491935-493533:1
so has part: feature:491935-493533:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:491935-493533:1:exon

AWJ20_3863
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3863
codon start: 1
product: hypothetical protein
translation: MVEATKTVSGSVPDLGTGSDPGALNNVIDLVSQLSEDGLAQLQKKIELLKSRSGGTAGSSSSPSSSTTNIKSSTSTTVAGTLPTDAAASGTPPTASSTPIPPTPSITTLDGSEKWGSKVIITTYPGQQGVKSVPIKWGAKDPLERGPVIVSRTTGSLKRRNAIGAYSGSYSIYHALAVAINDLPVDHKPDFTNAQPPVDIGPFPQWEGVDRIVSMDPFGHIAPWVYSDLAAKENLDIRPTIAVTKAHMQLAEIRDEVKSGKLKVDGKIVLNEQGDLAVTKVAVEPVWYLPGVAKRFGIDELTLRRALFEDTGGSYPELITRGDIKIFLPPIGGLTAYIFGDPAKVSDPNSKLALRIHDECNGSDVFGSDICTCRPYLLFGISEAVKEAQNGGSGVVIYFRKEGRALGEVTKYLVYNARKRGGDNAAEYFKRTENIAGVKDMRFQVLMPDILHFLGITKIDRMLSMSNMKHDAIVEQGIKIIERVPIPDELIPPDSRVEIDAKIFSGYFTTGKIVTAEDLQQVKGRQWEDIDH
SIO_010081: AWJ20_3863
subclass of: SO_0000673
so part of: AWJ20_3863
location: 491935..493533
location: region:491935-493533:1
so has part: feature:491935-493533:1:exon

XP_018733544.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:491935-493533:1:exon

AWJ20_3864
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: KIN3
locus tag: AWJ20_3864
so part of: sequence
location: <494277..>496028
location: region:494277-496028:1
so has part: feature:494277-496028:1:exon
subclass of: SO_0000010

30035932
type: Gene
SIO_000068: ncbigene

position:494277:1
position: 494277
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:496028:1
position: 496028
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:494277-496028:1:exon

AWJ20_3864
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: KIN3
locus tag: AWJ20_3864
product: serine/threonine protein kinase KIN3
transcript id: XM_018880900.1
SIO_010081: AWJ20_3864
subclass of: SO_0000673
so part of: AWJ20_3864
location: <494277..>496028
location: region:494277-496028:1
so has part: feature:494277-496028:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:494277-496028:1:exon

AWJ20_3864
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: KIN3
locus tag: AWJ20_3864
inference: similar to AA sequence:KEGG_Orthology:K08857
codon start: 1
product: serine/threonine protein kinase KIN3
translation: MVRPDEFEPLEVIGRGSFGQIRKVRRITNGEILARKEISYKSMNQKEKAQLIAEFRILKSLVHPNIVQYLHHEHLVDEHIVHLYMEYCGGGDLAGLISQCRSSNTLVPENVIWGVFTQLIMALYRCHYNEDPPPVPEDLFGNDSDTPPPPNPSTVILHRDIKPDNVFLDENYSVKLGDFGLAKMLDQENRFARTYVGTPYYMSPEVLLDEPSTPSSDVWSLGCVIYELCALHPPFQAKTHMALSQKIREGAFDDIPSCYSSTLSRTITACLNTNPLQRPTTATLLRLDIIKLCRKEREILTRERELKAIEQILIEREHQMEQQLEQQRFQMEQEIEQEMYNRLEQRLAGVLEAEVEKRVEIALKSVMANNNNPNQVAVSPIDTSMLVAPSSPIPGMSTGRNVRGPRSIRDAIISPLRDMSNSQYRTTAIDSPLSYYPKNASNSNINSSNSSNSSSNNTVNVNIEGLGLSDGSGTSSTNSGSSVSSTSSTGTSSDPTANWITSKKDPQRVAPHYQAMHSSPGIGAAAAKARLLNTKGSTPGMLGRVAVQLQREAQDTTQIWDENIHGDNMPSPFLRRWERRTVS
SIO_010081: AWJ20_3864
subclass of: SO_0000673
so part of: AWJ20_3864
location: 494277..496028
location: region:494277-496028:1
so has part: feature:494277-496028:1:exon

XP_018733545.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:494277-496028:1:exon

AWJ20_3865
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ACT1
locus tag: AWJ20_3865
so part of: sequence
location: complement(<496266..>497540)
location: region:496266-497540:-1
so has part: feature:496266-497540:-1:exon
subclass of: SO_0000010

30035933
type: Gene
SIO_000068: ncbigene

position:496266:-1
position: 496266
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:497540:-1
position: 497540
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:496266-497540:-1:exon

AWJ20_3865
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ACT1
locus tag: AWJ20_3865
product: actin
transcript id: XM_018880901.1
SIO_010081: AWJ20_3865
subclass of: SO_0000673
so part of: AWJ20_3865
location: complement(<496266..>497540)
location: region:496266-497540:-1
so has part: feature:496266-497540:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:496266-497540:-1:exon

AWJ20_3865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ACT1
locus tag: AWJ20_3865
inference: similar to AA sequence:KEGG_Orthology:K11400
note: Actin; structural protein involved in cell polarization, endocytosis, and other cytoskeletal functions; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 10952318]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 24034245]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IDA] [PMID 10911987]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IPI] [PMID 15485911]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14645854]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14690608]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 16299513]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 3967297]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 6365930]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 8163554]; GO_component: GO:0005884 - actin filament [Evidence IDA] [PMID 6217414]; GO_component: GO:0032432 - actin filament bundle [Evidence IDA] [PMID 3967297]; GO_component: GO:0032432 - actin filament bundle [Evidence IDA] [PMID 6365930]; GO_component: GO:0032432 - actin filament bundle [Evidence IDA] [PMID 8163554]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 3967297]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 8163554]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA] [PMID 10911987]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IDA] [PMID 6217414]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 16135807]; GO_process: GO:0000916 - actomyosin contractile ring contraction [Evidence IDA,IMP] [PMID 9732290]; GO_process: GO:00…
codon start: 1
product: actin
translation: MTRVKPPQADDVTSIVIENGSTWTRVGYSGDVTPKHYIPTVYAKDADGKHYYGEEVDVPRPNTDIFSPMHDGCVQDWDAMSSFWKWIYSDKLFIEPNELPLVTVEPSWNSLANKQKALEVAFEDLQVPVFSLVKAPIATAYESARPTSLIIDIGSAVASVTPVIDGSLVPKTVFHSRFAGDFVNLHILTYLQTKNITITPSYLVRKKSVLDPGQPVSTPDLYEYPDIKPSFHAYQTSKVLHAFKETTSQVSNVPFTSASPFARIGRPFEFPDGFNMIFGPERLTTAEPLLKPTQFPLPQVNLPENSVGSAPGNTIMHGLGDLLYLSLSKLDITPEVLITLLNNIIICGGTSLISGLTDRIKEEILHMFPTYAPRFYIPEQESHRKNVVWTGASVLAGLGTFDQTWITKQEYDEFGAELAEKRFK
SIO_010081: AWJ20_3865
subclass of: SO_0000673
so part of: AWJ20_3865
location: complement(496266..497540)
location: region:496266-497540:-1
so has part: feature:496266-497540:-1:exon

XP_018733546.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:496266-497540:-1:exon

AWJ20_3866
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PRT1
locus tag: AWJ20_3866
so part of: sequence
location: <498378..>500636
location: region:498378-500636:1
so has part: feature:498378-500636:1:exon
subclass of: SO_0000010

30035934
type: Gene
SIO_000068: ncbigene

position:498378:1
position: 498378
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:500636:1
position: 500636
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:498378-500636:1:exon

AWJ20_3866
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PRT1
locus tag: AWJ20_3866
product: Prt1p
transcript id: XM_018880902.1
SIO_010081: AWJ20_3866
subclass of: SO_0000673
so part of: AWJ20_3866
location: <498378..>500636
location: region:498378-500636:1
so has part: feature:498378-500636:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:498378-500636:1:exon

AWJ20_3866
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PRT1
locus tag: AWJ20_3866
inference: similar to AA sequence:KEGG_Orthology:K03253
note: eIF3b subunit of the eukaryotic translation initiation factor 3 (eIF3); subunit of the core complex of eIF3; essential for translation; part of a subcomplex (Prt1p-Rpg1p-Nip1p) that stimulates binding of mRNA and tRNA(i)Met to ribosomes; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 9722586]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 19470581]; GO_component: GO:0016282 - eukaryotic 43S preinitiation complex [Evidence IEA]; GO_component: GO:0033290 - eukaryotic 48S preinitiation complex [Evidence IEA]; GO_component: GO:0033290 - eukaryotic 48S preinitiation complex [Evidence IDA] [PMID 17242201]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IEA,IEA]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IDA,IPI] [PMID 9660829]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IDA,IPI] [PMID 9671501]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 11018020]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 15838098]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IDA,IPI,ISS] [PMID 7876188]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IDA] [PMID 9671501]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IEA]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translationa…
codon start: 1
product: Prt1p
translation: MPEATKNDHPHNEEEELDIDFSDLEAKYATNPDDGLETFVVVDGAPIVPAAKVEVLTKVLLKLFRSVGNIKAEDGFFMPMDEATGKSKGYVFIEYETPQQAQEAVKTYHQKKLDQRHTLLVNKLGDVERYGFAGNVASEYVEPTIEPFKPQEHLKSWLTDSQGRDQMVLHRGDNVGVFYNRKSQTPEQVVDRQHWTEKYVRWSPKGTYLVSIHRQGVALWGGDSWNRLGRFAHNDVRLIDFSPNEKYLISLSMEPISIPPPDSPARAACPFKEQDEGNHVVVWDVKTMLPLRSFPLLPGEGPSAASKNGPPAPEKKIVWPMFKWSSNSKYFARVIPDEALAIYEAPSMGLLDKKSIKIPGIVDFEFAPAPVKLEGHKATAATEDGGVAAGEQILCYWTPEMNNQTARVSIMDVGTRKVIRSRNLFNVSGCRLHWQDQGKYLCVKVDRHTKTKKSTFTNLEFFRLCDKDIPVEVLELKETVINFQWEPKSDRFVLISFLDQGPLATAPVANRNTVAFYAFERSKGSQGTWKPIKVQDKKATNSIYWSPKGRFVIAGTVRPSSACEFEFWDFDHEGDVKAAGAEDLPANLVNIGSCEHYGMTDLEWDPSGRFVVTSSSFWRHAIENGYKMWDFRGSLVREEAIEKFKSFLWRPRPASILPKEKRKQVNKNLKSYSRRFDEEDAMEESEASRQLILKRREALAEWREWRAEMEAHLHELGLTPESDLIAAADGDDDEVIEEIREEILEEKEEEIE
SIO_010081: AWJ20_3866
subclass of: SO_0000673
so part of: AWJ20_3866
location: 498378..500636
location: region:498378-500636:1
so has part: feature:498378-500636:1:exon

XP_018733547.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:498378-500636:1:exon

AWJ20_3867
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: IMD4
locus tag: AWJ20_3867
so part of: sequence
location: complement(<504870..>505979)
location: region:504870-505979:-1
so has part: feature:504870-505979:-1:exon
subclass of: SO_0000010

30035935
type: Gene
SIO_000068: ncbigene

position:504870:-1
position: 504870
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:505979:-1
position: 505979
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:504870-505979:-1:exon

AWJ20_3867
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: IMD4
locus tag: AWJ20_3867
product: IMP dehydrogenase IMD4
transcript id: XM_018880903.1
SIO_010081: AWJ20_3867
subclass of: SO_0000673
so part of: AWJ20_3867
location: complement(<504870..>505979)
location: region:504870-505979:-1
so has part: feature:504870-505979:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:504870-505979:-1:exon

AWJ20_3867
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: IMD4
locus tag: AWJ20_3867
inference: similar to AA sequence:KEGG_Orthology:K00088
note: Inosine monophosphate dehydrogenase; catalyzes the rate-limiting step in the de novo synthesis of GTP; member of a four-gene family in S. cerevisiae, constitutively expressed; IMD4 has a paralog, IMD3, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23222640]; GO_function: GO:0003938 - IMP dehydrogenase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003938 - IMP dehydrogenase activity [Evidence ISS] [PMID 11003640]; GO_function: GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006177 - GMP biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA,IEA]
codon start: 1
product: IMP dehydrogenase IMD4
translation: MPGKLVGIVTSRDIQFHDNDSTPVSDIMTKRSELVTASHGIDLASANDILRKSKKGKLPIVDSDGNIIALLSRTDLKKNHNYPLASKSADSKQLICGAAIGTRPDDRERLTKLAAAGLDLVILDSSQGNSVFQIEMIQWIKENYPHIEVVAGNVVTREQAASLIDAGADGLRIGMGSGSICITQEVMAVGRPQATAVYRVTEFANKFGVPCIADGGVQNIGHITKALALGASCVMMGGLLAGTTESPGQYFYREGQRLKAYRGMGSIEAMEKTGSNDNAATSRYFSESDAVLVAQGVSGSVVDRGSITKFIPYLMSGLQHGLQDIGVRSVGELREKVDAGLVRFEHRTPSAQLEGGVHSLHSYEKRLHN
SIO_010081: AWJ20_3867
subclass of: SO_0000673
so part of: AWJ20_3867
location: complement(504870..505979)
location: region:504870-505979:-1
so has part: feature:504870-505979:-1:exon

XP_018733548.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:504870-505979:-1:exon

AWJ20_3868
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: IMD4
locus tag: AWJ20_3868
so part of: sequence
location: complement(<506268..>506783)
location: region:506268-506783:-1
so has part: feature:506268-506783:-1:exon
subclass of: SO_0000010

30035936
type: Gene
SIO_000068: ncbigene

position:506268:-1
position: 506268
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:506783:-1
position: 506783
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:506268-506783:-1:exon

AWJ20_3868
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: IMD4
locus tag: AWJ20_3868
product: IMP dehydrogenase IMD4
transcript id: XM_018880904.1
SIO_010081: AWJ20_3868
subclass of: SO_0000673
so part of: AWJ20_3868
location: complement(<506268..>506783)
location: region:506268-506783:-1
so has part: feature:506268-506783:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:506268-506783:-1:exon

AWJ20_3868
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: IMD4
locus tag: AWJ20_3868
inference: similar to AA sequence:KEGG_Orthology:K00088
note: Inosine monophosphate dehydrogenase; catalyzes the rate-limiting step in the de novo synthesis of GTP; member of a four-gene family in S. cerevisiae, constitutively expressed; IMD4 has a paralog, IMD3, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23222640]; GO_function: GO:0003938 - IMP dehydrogenase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003938 - IMP dehydrogenase activity [Evidence ISS] [PMID 11003640]; GO_function: GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006177 - GMP biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA,IEA]
codon start: 1
product: IMP dehydrogenase IMD4
translation: MSPAVTKLSATQALAHLKEYEELDGLDVRTLMDPNIRGGLTYNDFLLLPGKIDFPSSIVNLESKISRNISLKLPLVSSPMDTVTESEMAIHMALLGGIGIIHHNCTPDEQAAMVRKVKKYENGFISDPVVVAPTKTVGEVRALKESLGFAGFPVTGKCIFQLVDLSGSDLI
SIO_010081: AWJ20_3868
subclass of: SO_0000673
so part of: AWJ20_3868
location: complement(506268..506783)
location: region:506268-506783:-1
so has part: feature:506268-506783:-1:exon

XP_018733549.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:506268-506783:-1:exon

AWJ20_3869
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PEP4
locus tag: AWJ20_3869
so part of: sequence
location: complement(<507742..>508815)
location: region:507742-508815:-1
so has part: feature:507742-508815:-1:exon
subclass of: SO_0000010

30035937
type: Gene
SIO_000068: ncbigene

position:507742:-1
position: 507742
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:508815:-1
position: 508815
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:507742-508815:-1:exon

AWJ20_3869
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PEP4
locus tag: AWJ20_3869
product: proteinase A
transcript id: XM_018880905.1
SIO_010081: AWJ20_3869
subclass of: SO_0000673
so part of: AWJ20_3869
location: complement(<507742..>508815)
location: region:507742-508815:-1
so has part: feature:507742-508815:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:507742-508815:-1:exon

AWJ20_3869
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PEP4
locus tag: AWJ20_3869
inference: similar to AA sequence:KEGG_Orthology:K01381
codon start: 1
product: proteinase A
translation: MSRGSSGGEQKPLINENNVDIDLEIAAAKGGVDVPLTNYVNAQYFTEISLGNPPQQFKVVLDTGSSNLWVPSSECGSIACYLHEKYDSSASSSYKSNGSDFEIHYGSGSVSGFVSQDTLKIGSLTIPNQDFAEITSEPGLAFAFGKFDGILGLAYDTISVNHIVPPIYNAIKDKLLDENKFSFHLGDTAKSAAGGTATFGGIDEDLFEGKLTYLPLRRLAYWEVPFDSIALGNEVADLEDTGAAIDTGTSLLALPSGLAEILNAQIGAKKSWSGQYTIDCAARDTLPDLTLNFAGYNFTLTAYDYTLEISGSCASAFTPLDIPAPIGPLAIIGDSFLRRYYSVYDIDNNAVGLAKAK
SIO_010081: AWJ20_3869
subclass of: SO_0000673
so part of: AWJ20_3869
location: complement(507742..508815)
location: region:507742-508815:-1
so has part: feature:507742-508815:-1:exon

XP_018733550.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:507742-508815:-1:exon

AWJ20_3870
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3870
so part of: sequence
location: complement(<512551..>514062)
location: region:512551-514062:-1
so has part: feature:512551-514062:-1:exon
subclass of: SO_0000010

30035939
type: Gene
SIO_000068: ncbigene

position:512551:-1
position: 512551
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:514062:-1
position: 514062
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:512551-514062:-1:exon

AWJ20_3870
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3870
product: ser/thr/tyr protein kinase RAD53
transcript id: XM_018880907.1
SIO_010081: AWJ20_3870
subclass of: SO_0000673
so part of: AWJ20_3870
location: complement(<512551..>514062)
location: region:512551-514062:-1
so has part: feature:512551-514062:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:512551-514062:-1:exon

AWJ20_3870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3870
codon start: 1
product: ser/thr/tyr protein kinase RAD53
translation: MNHNIGTGRFLLKPLQDINLSKNGIDFIGSLLTVDAQHRPNATVCLKLPWMMETEESFNSGESVLEELPITPARQAPAPPRPLPPIPPSAAQLAADSPVRSTVRPAAVTPGKVSGLPAPESPAVDPGPADLQSSYNEELPISSLQIRSSVEPEIPDNTDSNDKSEQEKALKDYESLEAEYNSLPALAECDSDSDSQEIKEHVEAQLSQRSNKYGDSSMQVESSFDSGIHLRNGLASSPGHKVLPFQQPGVRDFDSIGNADQPPPGAYMRLDTLPNSIPFRDIYVTRPVFTLGRVPDNDVQVEERRVSKRHCEIIRVPHSGSGVKQEIWLVDRSSNGCFLNGELIGAGKKALIESGDTICLFIDMDRDNKRKSIFHTHKHICSSDSLTYYAGHITLGFSANILDADDEGYLKRCQLIQEGGQPVTAAEPAVLATPSEDSDSSPIRKQLHSYTDAPNNNNATDTRPNLSRLPSKKRAFGVSISCFAGATRVWGGAPAAGGSTTSH
SIO_010081: AWJ20_3870
subclass of: SO_0000673
so part of: AWJ20_3870
location: complement(512551..514062)
location: region:512551-514062:-1
so has part: feature:512551-514062:-1:exon

XP_018733551.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:512551-514062:-1:exon

AWJ20_3871
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3871
so part of: sequence
location: <517514..>519562
location: region:517514-519562:1
so has part: feature:517514-519562:1:exon
subclass of: SO_0000010

30035940
type: Gene
SIO_000068: ncbigene

position:517514:1
position: 517514
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:519562:1
position: 519562
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:517514-519562:1:exon

AWJ20_3871
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3871
product: hypothetical protein
transcript id: XM_018880908.1
SIO_010081: AWJ20_3871
subclass of: SO_0000673
so part of: AWJ20_3871
location: join(<517514..517627,518288..>519562)
location: region:517514-519562:1
so has part: feature:517514-517627:1:exon
so has part: feature:518288-519562:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:517514-517627:1:exon

position:517627:1
position: 517627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:518288-519562:1:exon

position:518288:1
position: 518288
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

AWJ20_3871
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3871
codon start: 1
product: hypothetical protein
translation: MTTLDYEEPLTSTVRPNTAAFLTVRFIKSFPYRTVKNHRRLTAQTRGTKVTAEVLDSRTETVDNGSEKTNSVGQVTSDGSETSNKATKTGSGTTTGNGGERRNRGQLTSTQTRRGVTKVSTEVLKSRTEAVDNGSEKTDSVRQVTSNGIETSNKATKTSSGTTTGNGGERRNRGQLASTQTRRGVTKVSTEVLKSGTETVDNGSEKTNSVGQVTSDGSETSNKATKTGSGTTTGNGGERRNRGQLTSTQTRRGVTKVSTEVLKSRTETVDNGLKETDSVGQVTSDGSEASNKATKTGSGTTTGNGGKRGNGGERRNRGQLTTAQTRSTKVTAEVLKSRTETVDNGLEKTDSVGQVTSDGSETSNETTKTGSGTTTGNGGNGGERRNRGQLTTAQTRSTKVTTEVLKSRTETVNNRLKETDSVGQVTSDGIKTSNETTKTSGSTTAGDLGHRSSVNSCKRKGN
SIO_010081: AWJ20_3871
subclass of: SO_0000673
so part of: AWJ20_3871
location: join(517514..517627,518288..519562)
location: region:517514-519562:1
so has part: feature:517514-517627:1:exon
so has part: feature:518288-519562:1:exon

XP_018733552.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:517514-517627:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:518288-519562:1:exon

AWJ20_3872
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3872
so part of: sequence
location: complement(<518294..>519583)
location: region:518294-519583:-1
so has part: feature:518294-519583:-1:exon
subclass of: SO_0000010

30035941
type: Gene
SIO_000068: ncbigene

position:518294:-1
position: 518294
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:519583:-1
position: 519583
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:518294-519583:-1:exon

AWJ20_3872
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3872
product: putative spidroin-1-like
transcript id: XM_018880909.1
SIO_010081: AWJ20_3872
subclass of: SO_0000673
so part of: AWJ20_3872
location: complement(<518294..>519583)
location: region:518294-519583:-1
so has part: feature:518294-519583:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:518294-519583:-1:exon

AWJ20_3872
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3872
codon start: 1
product: putative spidroin-1-like
translation: MRSTSYSLVALSLAAVNAAPMPQVPGGGAAAGLGGLVAGLDPVTGDLSNTVGLLEPVVDSLGPALEHLGGDLGAPGLSRRQLPSVPSLPSVPSVPGGGAAAGLGGLVAGLAPVTGDLSNTVGLLEPVVDSLGPALEHLGGDLGAPGLSRRQLPSVPSLPSVPSLPSVPGGGAAAGLGGLVAGLAPVTGDLSNTVGLLEPVVDSLGPALEDLGADLGDASSGLSARQLPSVPSLPSVPGGGAAAGLGGLVAGLAPVTGDLSNTVGLLAPVVDSLGPALEDLGADLGDASSGLSARQLPSVPSLPSVPGGGAAAGLGGLVAGLDPVTGDLSNTVGLLAPVVDSLGPALEDLGADLGDASSGLSARQLPSVPSLPSVPGGGAAAGLGGLVAGLAPVTGDLSNTVGLLAPVVDSLGPAVEHLGGDLGAPGLSR
SIO_010081: AWJ20_3872
subclass of: SO_0000673
so part of: AWJ20_3872
location: complement(518294..519583)
location: region:518294-519583:-1
so has part: feature:518294-519583:-1:exon

XP_018733553.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:518294-519583:-1:exon

AWJ20_3873
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3873
so part of: sequence
location: complement(<521620..>522333)
location: region:521620-522333:-1
so has part: feature:521620-522333:-1:exon
subclass of: SO_0000010

30035942
type: Gene
SIO_000068: ncbigene

position:521620:-1
position: 521620
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:522333:-1
position: 522333
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:521620-522333:-1:exon

AWJ20_3873
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3873
product: hypothetical protein
transcript id: XM_018880910.1
SIO_010081: AWJ20_3873
subclass of: SO_0000673
so part of: AWJ20_3873
location: complement(<521620..>522333)
location: region:521620-522333:-1
so has part: feature:521620-522333:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:521620-522333:-1:exon

AWJ20_3873
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3873
codon start: 1
product: hypothetical protein
translation: MRSTTYSLATALTLSVVLAAPAPQELPSVPGLPSLPGLPSLPGASGLPSVPGVSGLPSVPGVSGLPSVPGVSGLPSLPGVSGLPSLPGVSGLPSLPGASGVEGLVGGLLDTVVGLLEPIIATLDPAAAAQAEAALANAGLKVRRQLPTGGAAALDGAGNEVLDAVASIVEPLVAVLDPSAETQKGIFGIEKRDFHHGEHHGNHHGDHSHPHPPTPSPNSEVDNLVDGLDSTIDSLNL
SIO_010081: AWJ20_3873
subclass of: SO_0000673
so part of: AWJ20_3873
location: complement(521620..522333)
location: region:521620-522333:-1
so has part: feature:521620-522333:-1:exon

XP_018733554.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:521620-522333:-1:exon

AWJ20_3874
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3874
so part of: sequence
location: <521975..>522265
location: region:521975-522265:1
so has part: feature:521975-522265:1:exon
subclass of: SO_0000010

30035943
type: Gene
SIO_000068: ncbigene

position:521975:1
position: 521975
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:522265:1
position: 522265
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:521975-522265:1:exon

AWJ20_3874
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3874
product: hypothetical protein
transcript id: XM_018880911.1
SIO_010081: AWJ20_3874
subclass of: SO_0000673
so part of: AWJ20_3874
location: <521975..>522265
location: region:521975-522265:1
so has part: feature:521975-522265:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:521975-522265:1:exon

AWJ20_3874
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3874
codon start: 1
product: hypothetical protein
translation: MMGSRRPTTVSRRPPTRPSTPLAPGREGRPETPGREGRPETPGREGRPETPGTEGRPETPGTEGRPETPGTEGRPEAPGREGRPGREGRPGTEGSS
SIO_010081: AWJ20_3874
subclass of: SO_0000673
so part of: AWJ20_3874
location: 521975..522265
location: region:521975-522265:1
so has part: feature:521975-522265:1:exon

XP_018733555.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:521975-522265:1:exon

AWJ20_3875
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MPM1
locus tag: AWJ20_3875
so part of: sequence
location: <525204..>526226
location: region:525204-526226:1
so has part: feature:525204-526226:1:exon
subclass of: SO_0000010

30035944
type: Gene
SIO_000068: ncbigene

position:525204:1
position: 525204
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:526226:1
position: 526226
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:525204-526226:1:exon

AWJ20_3875
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MPM1
locus tag: AWJ20_3875
product: Mpm1p
transcript id: XM_018880912.1
SIO_010081: AWJ20_3875
subclass of: SO_0000673
so part of: AWJ20_3875
location: <525204..>526226
location: region:525204-526226:1
so has part: feature:525204-526226:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:525204-526226:1:exon

AWJ20_3875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MPM1
locus tag: AWJ20_3875
note: Mitochondrial intermembrane space hypothetical protein; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 11791739]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22993211]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11791739]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 9874242]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]
codon start: 1
product: Mpm1p
translation: MTKDDDNRPGVNSEKDDTAKAWSELSGTLDEVWDLTDRTFGRLTNLASVYGDKVQGALDDNWRNWLDADMIWRSSWKNDGSEGGNGSDDGENNESWHRRFHRVRDCRKDSKMWGYPVPSQRQYDKCIENNGTSVWSRDGVWRCLFPESNANPMAIANAKDVAASASASSGSSLENHQWFTDYSVYLDWRRAMRKAEAAKRESEWNRIKERKEKLFSFPSDSDIESSARSTSISSGNSSGNNGSTAVSATSSAAKQITESEAEDQGKNVISKSIVVESVWRDGKLQTRQVVKKWYDDNTVSVKETTNSNANSNSNPALTSGTSEDGLNHHSNDSKGGWFWK
SIO_010081: AWJ20_3875
subclass of: SO_0000673
so part of: AWJ20_3875
location: 525204..526226
location: region:525204-526226:1
so has part: feature:525204-526226:1:exon

XP_018733556.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:525204-526226:1:exon

AWJ20_3876
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: GLC8
locus tag: AWJ20_3876
so part of: sequence
location: <527614..>528468
location: region:527614-528468:1
so has part: feature:527614-528468:1:exon
subclass of: SO_0000010

30035945
type: Gene
SIO_000068: ncbigene

position:527614:1
position: 527614
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:528468:1
position: 528468
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:527614-528468:1:exon

AWJ20_3876
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: GLC8
locus tag: AWJ20_3876
product: Glc8p
transcript id: XM_018880913.1
SIO_010081: AWJ20_3876
subclass of: SO_0000673
so part of: AWJ20_3876
location: <527614..>528468
location: region:527614-528468:1
so has part: feature:527614-528468:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:527614-528468:1:exon

AWJ20_3876
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: GLC8
locus tag: AWJ20_3876
inference: similar to AA sequence:KEGG_Orthology:K16833
note: Regulatory subunit of protein phosphatase 1 (Glc7p); involved in glycogen metabolism and chromosome segregation; proposed to regulate Glc7p activity via conformational alteration; ortholog of the mammalian protein phosphatase inhibitor 2; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008047 - enzyme activator activity [Evidence IDA] [PMID 12127071]; GO_function: GO:0004864 - protein phosphatase inhibitor activity [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 7565759]; GO_process: GO:0005978 - glycogen biosynthetic process [Evidence TAS] [PMID 9584086]; GO_process: GO:0005977 - glycogen metabolic process [Evidence IEA]; GO_process: GO:0043086 - negative regulation of catalytic activity [Evidence IEA]; GO_process: GO:0043666 - regulation of phosphoprotein phosphatase activity [Evidence IEA]; GO_process: GO:0009966 - regulation of signal transduction [Evidence IEA]
codon start: 1
product: Glc8p
translation: MSSPSPTGSPRSPHFTTERRRSSASSNVKPKSILRNAPPPGVYNSNPGSPSVDSPAAFDRQAVLENTRANAKLNNIGAEIKRRNTLESGDQLTGDLDSLHNNDHNNNSSNSTTSSNSSTAGVDQDSERAKQEHLKWDEANLYLTEQEKAATMKITEPKTPYQGAVGDSEYYLPDEEDDVVKTRDNRILSVDELDGFSLGESVAPPAQVATQNDRILYRENDSNDAEDEDDEDEDDEDEEEEEEELTPEERHRRFEELRKSHYHMKAAALHTSVPAEDDDEDDEN
SIO_010081: AWJ20_3876
subclass of: SO_0000673
so part of: AWJ20_3876
location: 527614..528468
location: region:527614-528468:1
so has part: feature:527614-528468:1:exon

XP_018733557.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:527614-528468:1:exon

AWJ20_3877
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TUB2
locus tag: AWJ20_3877
so part of: sequence
location: <531013..>532137
location: region:531013-532137:1
so has part: feature:531013-532137:1:exon
subclass of: SO_0000010

30035946
type: Gene
SIO_000068: ncbigene

position:531013:1
position: 531013
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:532137:1
position: 532137
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:531013-532137:1:exon

AWJ20_3877
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TUB2
locus tag: AWJ20_3877
product: beta-tubulin
transcript id: XM_018880914.1
SIO_010081: AWJ20_3877
subclass of: SO_0000673
so part of: AWJ20_3877
location: <531013..>532137
location: region:531013-532137:1
so has part: feature:531013-532137:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:531013-532137:1:exon

AWJ20_3877
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TUB2
locus tag: AWJ20_3877
inference: similar to AA sequence:KEGG_Orthology:K07375
note: Beta-tubulin; associates with alpha-tubulin (Tub1p and Tub3p) to form tubulin dimer, which polymerizes to form microtubules; mutation in human ortholog is associated with congenital fibrosis of the extraocular muscles (CFEOM) with polymicrogyria; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IC] [PMID 9488492]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005828 - kinetochore microtubule [Evidence IC] [PMID 9488492]; GO_component: GO:0005874 - microtubule [Evidence IEA,IEA]; GO_component: GO:0005880 - nuclear microtubule [Evidence IC] [PMID 9488492]; GO_component: GO:0043234 - protein complex [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 9585415]; GO_component: GO:0045298 - tubulin complex [Evidence IDA,IPI] [PMID 9488492]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0045143 - homologous chromosome segregation [Evidence IC] [PMID 9488492]; GO_process: GO:0007017 - microtubule-based process [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IC] [PMID 9488492]; GO_process: GO:0030473 - nuclear migration along microtubule [Evidence IC] [PMID 9488492]; GO_process: GO:0051258 - protein polymerization [Evidence IEA]; GO_process: GO:0046677 - response to antibiotic [Evidence IEA]
codon start: 1
product: beta-tubulin
translation: MDAVRSGPFGNLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLDIVRREAEGCDSLQGFQIAHSLGGGTGSGMGTLLISKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSINELVNYADETFCIDNEALYNICQQTLKMPQPTHGDLNQLISAVMSGVTTCLRYPGQLNSDLRKLAVNLVPFPRLHFFTVGFAPLSAIGSKSFRSLTVPELTQQMFDAKNMMAAADPRLGRYLTVAAFFRGKVSMKEVEDQMRSVQERNSAYFVEWIPNNVQSAICSIPPKGLKMSATFVGNSTSIQELFKRVGDQFSAMFRRKAFLHWYINEGMDEMEFTEAESNMNDLVSEYQQYQQAAAYEEELDYEDEAPIDEM
SIO_010081: AWJ20_3877
subclass of: SO_0000673
so part of: AWJ20_3877
location: 531013..532137
location: region:531013-532137:1
so has part: feature:531013-532137:1:exon

XP_018733558.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:531013-532137:1:exon

AWJ20_3878
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CCC1
locus tag: AWJ20_3878
so part of: sequence
location: <540215..>541075
location: region:540215-541075:1
so has part: feature:540215-541075:1:exon
subclass of: SO_0000010

30035947
type: Gene
SIO_000068: ncbigene

position:540215:1
position: 540215
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:541075:1
position: 541075
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:540215-541075:1:exon

AWJ20_3878
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CCC1
locus tag: AWJ20_3878
product: Ccc1p
transcript id: XM_018880915.1
SIO_010081: AWJ20_3878
subclass of: SO_0000673
so part of: AWJ20_3878
location: <540215..>541075
location: region:540215-541075:1
so has part: feature:540215-541075:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:540215-541075:1:exon

AWJ20_3878
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CCC1
locus tag: AWJ20_3878
note: Putative vacuolar Fe2+/Mn2+ transporter; suppresses respiratory deficit of yfh1 mutants, which lack the ortholog of mammalian frataxin, by preventing mitochondrial iron accumulation; relative distribution to the vacuole decreases upon DNA replication stress; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 8866476]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 23708375]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 11390404]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015093 - ferrous iron transmembrane transporter activity [Evidence IMP] [PMID 11390404]; GO_function: GO:0005384 - manganese ion transmembrane transporter activity [Evidence IMP] [PMID 11390404]; GO_process: GO:0006874 - cellular calcium ion homeostasis [Evidence IGI,IMP] [PMID 7941738]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IGI,IMP] [PMID 10713071]; GO_process: GO:0030026 - cellular manganese ion homeostasis [Evidence IGI,IMP] [PMID 8866476]; GO_process: GO:0015684 - ferrous iron transport [Evidence IMP] [PMID 11390404]; GO_process: GO:0006828 - manganese ion transport [Evidence IMP] [PMID 11390404]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Ccc1p
translation: MLVLLKNAIFGSNQDDRRSLLPTARSYDSVNTIGCDNCQDDDTCSRSSSATASSFMESGIANPRVMSDIIIGLSDGLTVPFALTAGLSSLGDSKLVITGGLAELVSGAISMGLGGYLAARSESEYYEHQVAKEKATYAESPCLATQSIQEVLAEYKLSPETIKSFVADLEKSQEDTVNFIIRFARGLEEPASGREFTSAMTIGLAYFMGGFVPLIPYFFANDVVTGLYISAIVMAITLFLFGSIKTVISLGKECGRSQILSNGVKMTLTGGVAAAAAWGLVRAIDN
SIO_010081: AWJ20_3878
subclass of: SO_0000673
so part of: AWJ20_3878
location: 540215..541075
location: region:540215-541075:1
so has part: feature:540215-541075:1:exon

XP_018733559.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:540215-541075:1:exon

AWJ20_3879
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3879
so part of: sequence
location: complement(<541768..>546084)
location: region:541768-546084:-1
so has part: feature:541768-546084:-1:exon
subclass of: SO_0000010

30035948
type: Gene
SIO_000068: ncbigene

position:541768:-1
position: 541768
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:546084:-1
position: 546084
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:541768-546084:-1:exon

AWJ20_3879
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3879
product: hypothetical protein
transcript id: XM_018880916.1
SIO_010081: AWJ20_3879
subclass of: SO_0000673
so part of: AWJ20_3879
location: complement(<541768..>546084)
location: region:541768-546084:-1
so has part: feature:541768-546084:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:541768-546084:-1:exon

AWJ20_3879
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3879
codon start: 1
product: hypothetical protein
translation: MSFFYEGDQLHYRKDKVSEENVSSWTVVDLPYRAAGIVPDLPSFTAFLTQSFTLIPLLEVDLEIDGIQLLSLRKVVGPGTEMAIPKHLNTKSPNGFLKLQSLDVESFQVKIKYMNVTQMSNDSLFGKSGNLFSFGKKLFSSLVTSSSNPSDITEVVCFLRKVSGTIDVSVPASFAAKMKATVMKAPAKKAYISMLAYNKEEKELSELKPPLSDYIFPKEFNDAKIYIGFPTKQSTSMRSHICMNQLIPTMERTAVDMSNQHVKDWNQQMLYISGVLARAIYENEMSRIAMTYSTSQVTDMLESACYIINRFEFERSTPDPNVGDLIAAGFWRSSAKLSLPSEKGIKLSNEIRVADVNTSFIQQVPVLPYKVVSECPKFIERATYLGYLNKLSVQDVSEDIQGHTLSIQNFKELILWLLGELKHKNITFERLKSVLDIAVVVLPGEGAGETLFLRGVNSYQNKFVVEEKMPLPPTCAPFKFIKDIPWTTLHELGWEELELVDWLEYIVEQKSSLPLEQNISISPDFAILVLQKISTNWNSFTTPTKRRVISLLHNETCIPTQLGMKLPSESYLMDIPLFPNLPVKSPHLTADYKFLFTLGLRESVDMAFVLKLLHDPENSAVKWSTSDMVKYLTDNRKSLKHSDWQLLKEKAFFEADDDNSKVLYKAGELYAPDPTLKKLGFRTLKWNFWSNSGPEATLLFDIGLLRYPDEAALFKSAVSSESKLKIAIDYFVTNSAKNKYSAQRAALIGEKIIPCNLNGQVVYRAPKDCFIDSQVGEFGLPVVRDQLLVTEGWKFGIRKNPSMSELVNALRSKVPPSIAAAESMFTYLSTLVSFISPDHIKQLQSVAFIPIAVGQKIKYQYPLKTFLEPLEKDAHEDLFFKEFFDFVGMPASATPFLLKVGVRYNPSTLEMAEAAVDDPMSMYGLASSSDKYESFLYRLAEAWPELSKNYSLVSKMRTSRFLLALSYKGESCEDGDDDGYSYRQKASYSLASASEIVIVNDVISFNLFKSYLKVAPQDTKLEKFYAVLGSHQLSSVVETSVLLGNKLNSEDPVIAQRIGNIKSRIVERVKLFIEGTRERVKIRPNAMKSLTIIPVSKIQLRRRLNASSIRSDVVSESIKAFMQQKVLYVDLEDFDWYDVSQALIREILEKPSPDSIIVLELQLKSDLRSLQRKGFNVDRLMKQKMEEDIRLREQRQKAKEEARQKLQEQNRLKSEEAQRASDSNSEHPKSQALVPPTQPVPPSPQPMPDLISKSLPSQPEPTTVDNVPGSFPSGERDPLIPQPSPEPQFQPLSQSSSLPIPQPKSSGEGRTGSKLLGGLFNLTKKTEQLKPDYSKEPMDVLRKGLSSTKPFTQGKIKADMHVDVEPPKEMMSCDDGVAQDLRLVTQLKGGLKCFVKSSEPNFTPVQLEEAARFQHILLACSKVSTTHPSLSKPRTTPY
SIO_010081: AWJ20_3879
subclass of: SO_0000673
so part of: AWJ20_3879
location: complement(541768..546084)
location: region:541768-546084:-1
so has part: feature:541768-546084:-1:exon

XP_018733560.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:541768-546084:-1:exon

AWJ20_3880
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MUP1
locus tag: AWJ20_3880
so part of: sequence
location: <548349..>550058
location: region:548349-550058:1
so has part: feature:548349-550058:1:exon
subclass of: SO_0000010

30035950
type: Gene
SIO_000068: ncbigene

position:548349:1
position: 548349
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:550058:1
position: 550058
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:548349-550058:1:exon

AWJ20_3880
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MUP1
locus tag: AWJ20_3880
product: Mup1p
transcript id: XM_018880918.1
SIO_010081: AWJ20_3880
subclass of: SO_0000673
so part of: AWJ20_3880
location: <548349..>550058
location: region:548349-550058:1
so has part: feature:548349-550058:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:548349-550058:1:exon

AWJ20_3880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MUP1
locus tag: AWJ20_3880
note: High affinity methionine permease; integral membrane protein with 13 putative membrane-spanning regions; also involved in cysteine uptake; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence ISS] [PMID 8893857]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0000102 - L-methionine secondary active transmembrane transporter activity [Evidence IDA] [PMID 8893857]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0042883 - cysteine transport [Evidence IDA] [PMID 11330701]; GO_process: GO:0044690 - methionine import [Evidence IGI,IMP] [PMID 8893857]; GO_process: GO:0015821 - methionine transport [Evidence IDA] [PMID 11330701]; GO_process: GO:0000101 - sulfur amino acid transport [Evidence IMP] [PMID 8893857]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Mup1p
translation: MSAKYTRIDSGAGGSLGRPELGHGDSQISLELESLASSDEGSIRSVSSRGLSPLDSPIRSPEIRDDDNDPMSYGMQFHGRSMSVSTMGEHMINLPSTNDPFLGETAVPLEKQKRLTLFHGLSLVIGLQIGSGIFASPNQINSNAGSVGMSLIIWVAGGLLAWTGASSYAELGSAIPLNGSSQAYLNQIYGSLPSFLFSWTALTILKPGSTAIIAIIFSEYFCRALGSSPVFTNYWFQKFIAIIGLAIVVAINCFSTRLGARAGNFFLVIKIGVLLAITIIGIVASFHFHDTNALTGADSRGLFADSSKSIGNYAIALYAGLWAYDGWDNVNYVSAEMKNPRRDLPRVIHIAMPVVIVAYFLANIAYYAVMSEEEIEKTTSVAITFATKTMGPVAGIIFAILISLSCIGALNATIFSSARLVYSSAEEGFLPSMFCKLHPVRSTPVNALLLQSAIACIFILVGEFHSLLTFYGFAGYSFYFLTVSGVIVLRIREPDLDRPYKTYISTPILFCCVALFLVSRTLFEKPIESLFVALFIASGLPIYIWRFGLLSQASVPSFDDILRKLKIRR
SIO_010081: AWJ20_3880
subclass of: SO_0000673
so part of: AWJ20_3880
location: 548349..550058
location: region:548349-550058:1
so has part: feature:548349-550058:1:exon

XP_018733561.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:548349-550058:1:exon

AWJ20_3881
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3881
so part of: sequence
location: complement(<550308..>552002)
location: region:550308-552002:-1
so has part: feature:550308-552002:-1:exon
subclass of: SO_0000010

30035951
type: Gene
SIO_000068: ncbigene

position:550308:-1
position: 550308
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:552002:-1
position: 552002
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:550308-552002:-1:exon

AWJ20_3881
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3881
product: hypothetical protein
transcript id: XM_018880919.1
SIO_010081: AWJ20_3881
subclass of: SO_0000673
so part of: AWJ20_3881
location: complement(<550308..>552002)
location: region:550308-552002:-1
so has part: feature:550308-552002:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:550308-552002:-1:exon

AWJ20_3881
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3881
codon start: 1
product: hypothetical protein
translation: MYRVNSTTVGAGTGHGMSPQPTGGGSARKVYVRQDRGADLGTGSGLGSGIGINPDGNGMGGSLQSPLPAAVKSTGEIGSKGMFVRANSDTKVRPGSGSVKLKAASVPVVATVSTSNSGIGIGAESVGGNGNVFSSNTPGSRASSVVSDRQPRPQLRQRVSVLDLKPELHYNASVSSKSSVSSLNHNQVQSQNVNPSLDGRRSSNDSGSAGVNAYNKRLMSPSVSGTNTPVISPTYKPLIGTKDSKVLKYSPTANVSAAAENLPSHVAVSSGANDQASDSFTPNLTESSTLASSSSSFPSLSSPSPSSSFASAPAGLLPSPSLHQGSTLPESSPKDHSEILVKLPDKSANIISKAIQQESEQSSVSESMTLVPVLQPSDVTSLSAVSKARAERKIKDLEITNTSLLSINRYLEKKIHRQKKDIERLSTRRTSDRSSMGRRTTRNTEHGSDGDSDNDSDNESRYSGDYENSDLDESSLSSDFSDDEYSELDSSFIDTTLLDEVQERTSAHISFLKSAEKFDTMLRQCLIISDSLLNDAMSSLDFTVKPSDIGKKVVAVDAGESDDP
SIO_010081: AWJ20_3881
subclass of: SO_0000673
so part of: AWJ20_3881
location: complement(550308..552002)
location: region:550308-552002:-1
so has part: feature:550308-552002:-1:exon

XP_018733562.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:550308-552002:-1:exon

AWJ20_3882
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ACT1
locus tag: AWJ20_3882
so part of: sequence
location: complement(<552510..>553592)
location: region:552510-553592:-1
so has part: feature:552510-553592:-1:exon
subclass of: SO_0000010

30035952
type: Gene
SIO_000068: ncbigene

position:552510:-1
position: 552510
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:553592:-1
position: 553592
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:552510-553592:-1:exon

AWJ20_3882
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ACT1
locus tag: AWJ20_3882
product: actin
transcript id: XM_018880920.1
SIO_010081: AWJ20_3882
subclass of: SO_0000673
so part of: AWJ20_3882
location: complement(<552510..>553592)
location: region:552510-553592:-1
so has part: feature:552510-553592:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:552510-553592:-1:exon

AWJ20_3882
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ACT1
locus tag: AWJ20_3882
inference: similar to AA sequence:KEGG_Orthology:K05692
note: Actin; structural protein involved in cell polarization, endocytosis, and other cytoskeletal functions; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 10952318]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 24034245]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IDA] [PMID 10911987]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IPI] [PMID 15485911]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14645854]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14690608]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 16299513]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 3967297]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 6365930]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 8163554]; GO_component: GO:0005884 - actin filament [Evidence IDA] [PMID 6217414]; GO_component: GO:0032432 - actin filament bundle [Evidence IDA] [PMID 3967297]; GO_component: GO:0032432 - actin filament bundle [Evidence IDA] [PMID 6365930]; GO_component: GO:0032432 - actin filament bundle [Evidence IDA] [PMID 8163554]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 3967297]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 8163554]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA] [PMID 10911987]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IDA] [PMID 6217414]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 16135807]; GO_process: GO:0000916 - actomyosin contractile ring contraction [Evidence IDA,IMP] [PMID 9732290]; GO_process: GO:00…
codon start: 1
product: actin
translation: MCKAGFAGDDAPRAVFPSIVGRARHPGMMVGMNQKDSYVGDEAQSKRGILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPVNPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYAGFSLPHAIMRINLAGRDLTDNLMKLLTERGYSFTTTAEREIVREIKEKLCYVALDFEQELQTASQSSSLEKSYELPDGQVITIGNERFRAPEALFHPSVLGLESPGIHETTFNSIMKCDVDVRKDLYGNIVMSGGTTMYPGIAERMQKEITALAPSSMKIKIIAPPERKYSVWIGGSILASLGTFQQMWISKQEYDESGPSIVHRKCF
SIO_010081: AWJ20_3882
subclass of: SO_0000673
so part of: AWJ20_3882
location: complement(552510..553592)
location: region:552510-553592:-1
so has part: feature:552510-553592:-1:exon

XP_018733563.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:552510-553592:-1:exon

AWJ20_3883
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3883
so part of: sequence
location: <559176..>559388
location: region:559176-559388:1
so has part: feature:559176-559388:1:exon
subclass of: SO_0000010

30035953
type: Gene
SIO_000068: ncbigene

position:559176:1
position: 559176
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:559388:1
position: 559388
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:559176-559388:1:exon

AWJ20_3883
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3883
product: hypothetical protein
transcript id: XM_018880921.1
SIO_010081: AWJ20_3883
subclass of: SO_0000673
so part of: AWJ20_3883
location: <559176..>559388
location: region:559176-559388:1
so has part: feature:559176-559388:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:559176-559388:1:exon

AWJ20_3883
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3883
codon start: 1
product: hypothetical protein
translation: MAIPLPEKELTKSADNATGSNTSNLDGTAKEPYPTSIPTIIGNVNISKEEAERLYEERIEDEYAKREGGA
SIO_010081: AWJ20_3883
subclass of: SO_0000673
so part of: AWJ20_3883
location: 559176..559388
location: region:559176-559388:1
so has part: feature:559176-559388:1:exon

XP_018733564.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:559176-559388:1:exon

AWJ20_3884
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PMC1
locus tag: AWJ20_3884
so part of: sequence
location: <562802..>566446
location: region:562802-566446:1
so has part: feature:562802-566446:1:exon
subclass of: SO_0000010

30035954
type: Gene
SIO_000068: ncbigene

position:562802:1
position: 562802
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:566446:1
position: 566446
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:562802-566446:1:exon

AWJ20_3884
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PMC1
locus tag: AWJ20_3884
product: calcium-transporting ATPase PMC1
transcript id: XM_018880922.1
SIO_010081: AWJ20_3884
subclass of: SO_0000673
so part of: AWJ20_3884
location: <562802..>566446
location: region:562802-566446:1
so has part: feature:562802-566446:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:562802-566446:1:exon

AWJ20_3884
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PMC1
locus tag: AWJ20_3884
inference: similar to AA sequence:KEGG_Orthology:K01537
note: Vacuolar Ca2+ ATPase involved in depleting cytosol of Ca2+ ions; prevents growth inhibition by activation of calcineurin in the presence of elevated concentrations of calcium; similar to mammalian PMCA1a; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 24124599]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 7507493]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0005388 - calcium-transporting ATPase activity [Evidence IEA,IEA]; GO_function: GO:0005388 - calcium-transporting ATPase activity [Evidence IMP] [PMID 10431803]; GO_function: GO:0005388 - calcium-transporting ATPase activity [Evidence IGI] [PMID 7507493]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0070588 - calcium ion transmembrane transport [Evidence IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IMP] [PMID 15280017]; GO_process: GO:0006816 - calcium ion transport [Evidence IMP] [PMID 7507493]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006874 - cellular calcium ion homeostasis [Evidence IMP] [PMID 7507493]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 7507493]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: calcium-transporting ATPase PMC1
translation: MAAIATQEGKDWSADAKKILEEHREAEFEKKLPIGGGDVGFRYSPDQLNSLVDPKNAFVLREMGGIEGLAGGLGVDLNTGLTDQQATDSTRLDVYGRNVLPERKTKSLLKLMWIALQDKVLIILSVAAVVSLALGIYETVGEPPEYDDQGHKLPKVDWVEGVAILVAVVIVVTVGAVNDWQKERQFAKLNKKKEDRKVKAIRNGKPSEISVYDVVVGDILLVEPGEMIPTDGILVNGYNIKCDESSASGESDTMKKHPAKEVVDAIDHKSQGLNPQSKELDAFMLSGAKVLEGTGQFLTIAVGEKSLHGRTMMSLQDEPEATPLQEKLNNIAEGIAKLGFAAAIVLFVALMIRFFVQLPGSVKTPSQKGEEFMTIFITAVTIVVVAVPEGLPLAVTLALAFATTRMVKDNNLVRVLKSCETMGGATTICSDKTGTLTQNRMSVVAATVGFKSCEASIDGPADDQEVPVGDKSLEKSHDKNYDTASEDVLSPSQLVGILPETQFTTLLDSIALNSSAFEDNSPEATEPFLGSKTETALLGFARNYMNLGELLKYRQAADIVQVFPFDSAKKFMATIVRTSSGSYQVLLKGASEVVLSRCTQILDTDSFTNTNLTAEHLEFINNQINLYASKSLRTIGLVYKDLPADWSPDAPYALEENTLFKDMTFLTLVGIKDPLRPGVKQAVADCKTAGVVVRMVTGDNINTARAIALDCGILTSANNEDEIVMEGPEFRKLNPFELNSVVPKLRVLARSSPQDKRKLVKFLKSLDETVAVTGDGTNDAPALKLADIGFSMGIAGTEVAKEASDVILMDDNFGSIVKAIKWGRTVNDAVKKFLQFQLTVNVTAVLLTFISAVADSDDTSVLTAVQLLWVNLIMDTFAALALATDPPSDSVLHRKPDNRKASLITVTMWKMILGQAIFQLIVTFVLHFAGSQIFNVDTSVGRNKEQLSAMVFNTFVWLQFFNMFVNRRLDNHQNIFEGVHRNIFFILIAAIIGGMQIVIMFVGGAAFSVVKQTGAMWGTALICGMISIPAGVILRLVPDEWVAKLYPARAVNWAMSLLPRKKSSKGPEIIVDEESTMGDPQQYVWPAGIEQVRRELVFLKTVRGGRVLQLNFKPKSIYNSWKEALTPSSASTNSINSPHSPSSTLAPNSYFTDYHSNSNNGGNFLSVPGRRKGSNIAALAVVPAVVGGAIGGWSPELSTNPPPPSSPDSPKNKK
SIO_010081: AWJ20_3884
subclass of: SO_0000673
so part of: AWJ20_3884
location: 562802..566446
location: region:562802-566446:1
so has part: feature:562802-566446:1:exon

XP_018733565.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:562802-566446:1:exon

AWJ20_3885
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3885
so part of: sequence
location: complement(<563746..>564084)
location: region:563746-564084:-1
so has part: feature:563746-564084:-1:exon
subclass of: SO_0000010

30035955
type: Gene
SIO_000068: ncbigene

position:563746:-1
position: 563746
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:564084:-1
position: 564084
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:563746-564084:-1:exon

AWJ20_3885
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3885
product: hypothetical protein
transcript id: XM_018880923.1
SIO_010081: AWJ20_3885
subclass of: SO_0000673
so part of: AWJ20_3885
location: complement(<563746..>564084)
location: region:563746-564084:-1
so has part: feature:563746-564084:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:563746-564084:-1:exon

AWJ20_3885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3885
codon start: 1
product: hypothetical protein
translation: MVVAPPIVSQDFNTRTRLLSLTIRVVANARARVTANGRPSGTATTTIVTAVMKIVINSSPFCEGVLTDPGNWTKKRIIRATNKTIAAAKPSLAIPSAILFSFSCKGVASGSS
SIO_010081: AWJ20_3885
subclass of: SO_0000673
so part of: AWJ20_3885
location: complement(563746..564084)
location: region:563746-564084:-1
so has part: feature:563746-564084:-1:exon

XP_018733566.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:563746-564084:-1:exon

AWJ20_3886
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3886
so part of: sequence
location: complement(<564754..>565350)
location: region:564754-565350:-1
so has part: feature:564754-565350:-1:exon
subclass of: SO_0000010

30035956
type: Gene
SIO_000068: ncbigene

position:564754:-1
position: 564754
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:565350:-1
position: 565350
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:564754-565350:-1:exon

AWJ20_3886
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3886
product: hypothetical protein
transcript id: XM_018880924.1
SIO_010081: AWJ20_3886
subclass of: SO_0000673
so part of: AWJ20_3886
location: complement(<564754..>565350)
location: region:564754-565350:-1
so has part: feature:564754-565350:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:564754-565350:-1:exon

AWJ20_3886
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3886
codon start: 1
product: hypothetical protein
translation: MNVNRTAVTLTVNWNWRNFLTASLTVRPHLMALTILPKLSSMRITSDASLATSVPAIPIEKPISASLSAGASLVPSPVTATVSSKDFRNLTSFRLSCGDDLARTRSLGTTLLSSKGLSFRNSGPSMTISSSLLAEVKIPQSRAMARAVLILSPVTIRTTTPAVLQSATACLTPGRRGSLIPTRVKKVMSLNKVFSSSA
SIO_010081: AWJ20_3886
subclass of: SO_0000673
so part of: AWJ20_3886
location: complement(564754..565350)
location: region:564754-565350:-1
so has part: feature:564754-565350:-1:exon

XP_018733567.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:564754-565350:-1:exon

AWJ20_3887
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: YPS1
locus tag: AWJ20_3887
so part of: sequence
location: complement(<567989..>569179)
location: region:567989-569179:-1
so has part: feature:567989-569179:-1:exon
subclass of: SO_0000010

30035957
type: Gene
SIO_000068: ncbigene

position:567989:-1
position: 567989
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:569179:-1
position: 569179
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:567989-569179:-1:exon

AWJ20_3887
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: YPS1
locus tag: AWJ20_3887
product: Yps1p
transcript id: XM_018880925.1
SIO_010081: AWJ20_3887
subclass of: SO_0000673
so part of: AWJ20_3887
location: complement(<567989..>569179)
location: region:567989-569179:-1
so has part: feature:567989-569179:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:567989-569179:-1:exon

AWJ20_3887
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: YPS1
locus tag: AWJ20_3887
note: Aspartic protease; member of the yapsin family of proteases involved in cell wall growth and maintenance; attached to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor; YPS1 has a paralog, MKC7, that arose from the whole genome duplication; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 10383953]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IDA] [PMID 8389368]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 16087741]; GO_process: GO:0016485 - protein processing [Evidence IDA] [PMID 8626758]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]
codon start: 1
product: Yps1p
translation: MFFQAPVAILTLATLCAAAPANHKGYLSAKTKLHHVSHGNFTKRSSSYETPLGNDIFAYVISFEVGTPPQPIEAAIDTGSADLWIYTTESGQTFPFDTSSSSTYQVLNDDFQINYVSGSASGDWAIDTVNVAGASLTNQQFGSVSVNQNMGCVFGIGYQATEYTDTKYTNIPQNLVDQGYTAHNAYSLYLDDIDAGEGAILFGAVDSDKYSGQLYTVPITSSSSLQVTVSGVTGDNGDSLGGEVTAVLDSGTSLTYLPQDTADSIANYLGATFDSSLGAYLLSDVPTSSITYSFSGALVTVPGSELAIPSSDFGFSNTQPYTLSIFPNSESADITLLGQSFLRSAYVVYDLDSNQISIAQSSWNSDSSNIHVITDSVPGAVSAPGLKNPINHLHHQ
SIO_010081: AWJ20_3887
subclass of: SO_0000673
so part of: AWJ20_3887
location: complement(567989..569179)
location: region:567989-569179:-1
so has part: feature:567989-569179:-1:exon

XP_018733568.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:567989-569179:-1:exon

AWJ20_3888
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3888
so part of: sequence
location: <570186..>570258
location: region:570186-570258:1
so has part: feature:570186-570258:1:exon
subclass of: SO_0000663

30035958
type: Gene
SIO_000068: ncbigene

position:570186:1
position: 570186
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:570258:1
position: 570258
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:570186-570258:1:exon

AWJ20_3888
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_3888
product: tRNA-Arg
SIO_010081: AWJ20_3888
subclass of: SO_0000673
so part of: AWJ20_3888
location: <570186..>570258
location: region:570186-570258:1
so has part: feature:570186-570258:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:570186-570258:1:exon

AWJ20_3889
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3889
so part of: sequence
location: complement(<570577..>571596)
location: region:570577-571596:-1
so has part: feature:570577-571596:-1:exon
subclass of: SO_0000010

30035959
type: Gene
SIO_000068: ncbigene

position:570577:-1
position: 570577
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:571596:-1
position: 571596
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:570577-571596:-1:exon

AWJ20_3889
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3889
product: carbonyl reductase (NADPH-dependent)
transcript id: XM_018880926.1
SIO_010081: AWJ20_3889
subclass of: SO_0000673
so part of: AWJ20_3889
location: complement(<570577..>571596)
location: region:570577-571596:-1
so has part: feature:570577-571596:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:570577-571596:-1:exon

AWJ20_3889
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3889
note: Putative dihydrokaempferol 4-reductase; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004090 - carbonyl reductase (NADPH) activity [Evidence ISA] [PMID 19577617]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0050662 - coenzyme binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0044237 - cellular metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]
codon start: 1
product: carbonyl reductase (NADPH-dependent)
translation: MVKVLLTGGSGFIAAHVLDILIEKGYEVVTTVRSQQKGQKILDAHPKVSKDKLSYVIVEDIAQPGAFDEAVKSEPGFDAVIHTASPFHFNVVDPVKDLLDPAVNGTVGILKAIKAHAPTVKRVAITSSFASIINASQHPETYSEKDWNPVTWEQATDPKDPATTYRGSKTFAEKAAWDFVEKEKPNFTITTLCPPLVLGPIVHYLNSLDAINTSNARVRDFIQGKYKGQSELPPTGTFIWVDVRDLALSHVLAIEKSEAENQRFFITAGYFSNKKIVEAIRKSHPELSDKLPLSSAKDDTPEGVYGYDNSKSIKLLGLKYSPFDAAIKDTVDSLLEVGA
SIO_010081: AWJ20_3889
subclass of: SO_0000673
so part of: AWJ20_3889
location: complement(570577..571596)
location: region:570577-571596:-1
so has part: feature:570577-571596:-1:exon

XP_018733569.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:570577-571596:-1:exon

AWJ20_3890
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ATG3
locus tag: AWJ20_3890
so part of: sequence
location: <573547..>574593
location: region:573547-574593:1
so has part: feature:573547-574593:1:exon
subclass of: SO_0000010

30035961
type: Gene
SIO_000068: ncbigene

position:573547:1
position: 573547
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:574593:1
position: 574593
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:573547-574593:1:exon

AWJ20_3890
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ATG3
locus tag: AWJ20_3890
product: Atg3p
transcript id: XM_018880928.1
SIO_010081: AWJ20_3890
subclass of: SO_0000673
so part of: AWJ20_3890
location: <573547..>574593
location: region:573547-574593:1
so has part: feature:573547-574593:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:573547-574593:1:exon

AWJ20_3890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ATG3
locus tag: AWJ20_3890
inference: similar to AA sequence:KEGG_Orthology:K08343
note: E2-like enzyme; involved in autophagy and the cytoplasm-to-vacuole targeting (Cvt) pathway; plays a role in formation of Atg8p-phosphatidylethanolamine conjugates, which are involved in membrane dynamics during autophagy and Cvt; interaction with Atg8p is regulated by its acetylation by Esa1p (catalytic subunit of NuA4 histone acetyltransferase complex) while attenuation of Atg3 acetylation is mediated by histone deacetylase Rpd3p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11149920]; GO_function: GO:0019776 - Atg8 ligase activity [Evidence IMP,ISS] [PMID 11100732]; GO_process: GO:0006501 - C-terminal protein lipidation [Evidence IMP] [PMID 11100732]; GO_process: GO:0006501 - C-terminal protein lipidation [Evidence IDA,IMP] [PMID 15277523]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 9023185]; GO_process: GO:0000045 - autophagic vacuole assembly [Evidence IMP] [PMID 11149920]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0044805 - late nucleophagy [Evidence IMP] [PMID 22768199]; GO_process: GO:0000422 - mitochondrion degradation [Evidence IMP] [PMID 19793921]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 18701704]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Atg3p
translation: MLRSTLSSFRDWREYLTPAYHVSSFKETGQITPEEFVEAGDYLVYKFPTWSWAGAPASKRRDFLPEDKQVLVTKHVPSHLRAGAFTDGAGDELDVIVDGADGGDGDDGWVSTAGSNHGSASLKSGSSKVIDREQTGSGPVTESDTASIEEIIDIDEFEELDEDDQIYRPDDGGDTSKSSGANNSTRSPNRTYNLFITYSTSYRVPKFYLSGFNADGNPLSPNEMFEDIVVDYRDKTVTIEKAPFEEDLTLISVHPCRHANVMKILLDRAENRLRQKQAVEHDELLKGISKVGLADSTVDDWEEIGSNEPPTTSELQQTAIRVDQYLVIFLKFIASVTPGIELDNTMVM
SIO_010081: AWJ20_3890
subclass of: SO_0000673
so part of: AWJ20_3890
location: 573547..574593
location: region:573547-574593:1
so has part: feature:573547-574593:1:exon

XP_018733570.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:573547-574593:1:exon

AWJ20_3891
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PDS5
locus tag: AWJ20_3891
so part of: sequence
location: <576039..>579665
location: region:576039-579665:1
so has part: feature:576039-579665:1:exon
subclass of: SO_0000010

30035962
type: Gene
SIO_000068: ncbigene

position:576039:1
position: 576039
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:579665:1
position: 579665
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:576039-579665:1:exon

AWJ20_3891
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PDS5
locus tag: AWJ20_3891
product: Pds5p
transcript id: XM_018880929.1
SIO_010081: AWJ20_3891
subclass of: SO_0000673
so part of: AWJ20_3891
location: <576039..>579665
location: region:576039-579665:1
so has part: feature:576039-579665:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:576039-579665:1:exon

AWJ20_3891
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PDS5
locus tag: AWJ20_3891
inference: similar to AA sequence:KEGG_Orthology:K11267
note: Protein involved in sister chromatid condensation and cohesion; colocalizes with cohesin on chromosomes, may function as a protein-protein interaction scaffold; also required during meiosis; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0000794 - condensed nuclear chromosome [Evidence IDA] [PMID 11062262]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0000798 - nuclear cohesin complex [Evidence IDA] [PMID 22901742]; GO_component: GO:0034990 - nuclear mitotic cohesin complex [Evidence IDA] [PMID 22912589]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0005198 - structural molecule activity [Evidence ISS] [PMID 11137006]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 11448778]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 19736318]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IMP] [PMID 15819623]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IMP] [PMID 11062262]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IMP] [PMID 11062262]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IMP] [PMID 14623866]; GO_process: GO:0007129 - synapsis [Evidence IMP] [PMID 19736318]
codon start: 1
product: Pds5p
translation: MIESIFNIFYDVVQKEQIDGLEFLLTAILSQLINELETPPRPITKIVLSHLLRGEPQTNKDQEEEDGETNLPLAKKKKKPVAGRNKNDDQGNTVISFVSRGYNVSKTVCMDNIDIMTRVVNQYVADILNPILLHTSNNSSSTGSEDLTEDIEKLGNLVIAVWKAVPELLVNVLGQLEQNMSIENTALRYMSTRVIGEIICFEASRINFITEYNAIFKTWIGRYRDVSPKIRINWANTVPNFVKNQTNHTIVLESVIPFLGLLEDPDEKVRIAVCKALANVDIDTIATTYATVVEQPLAALADRLRDKKSLVRLAAFQAVGKIYDEAYEQIAAGNLQISDVSSWIPSHILGLLYVNDLEINEHLDWVLFDYIYPFEQLSGSDSEEAALARARRLLTIVKALNEESFKAFTAISSRQVAVARYLNAYLEFCKQYHDAAGITRSGLKKSRQSNGGNENSNENPSSPANRDELSNKINSLIKWVASVYPDSEKVHDHLTAFFKSNDRQAFKLFGICINPDSDYKSVYDSYHSLMDRLSKSSSLNSIEPTIKSILYRSAFILFNKTNVSAIINISRSATAQDSVNLKDVSYIILKEIAAIQPGLIKSQSQDISLIIENASPGDKGLVDTLKTARLLFGKFPDLVPSAPAVWRSLLNIAKTGSIKEAKHATNVLDFAPKKNTLLTKLVEGLDVILSGPYEDVPENFSTVLSCIAQLYYHNPQVIEPYSGLVISFLLRHVLLSNKARPAKDDDPDWVDDSEVNRGSLIERIEGPTSLEATGKLDEHLQRKLLALRIMVNRARSPYLDEDSADEVAKPILNLLMTLLVHNGELNTKDEDTPPHYKSRLRLEACVKILKLSQTGHCLKRIGPAELNVLGVLIRDSQLQVRDRFILKLTTLLSDGSIPERFLCLVFFVAGESNKMLSNYCIRWIKARAARQVKSNSSSTALENSFVRFLHVLAHSGTGEEYEEGEDDNEQLLTSLSRAAKYIIFFLKLIATESNISLLLYLSQRIKEYKDVVSQDSDSESSSSGLYTVADLAQICVLEMKKTRGWVPDPWPGKISLPADSFEPIESTEEAQRVFRAVYIPDNIDAQLRESISKEFHHHAKVKPEPTEASNGRGTSAPKKRTSQGSSSSSVKTKKPKAKAATKFKSLTRASEESVAPRRSSRVATKKVNYMVENSDNEDEENEEEEEESNSEEDEEEEGSDDGNDTDQD
SIO_010081: AWJ20_3891
subclass of: SO_0000673
so part of: AWJ20_3891
location: 576039..579665
location: region:576039-579665:1
so has part: feature:576039-579665:1:exon

XP_018733571.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:576039-579665:1:exon

AWJ20_3892
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RCO1
locus tag: AWJ20_3892
so part of: sequence
location: complement(<579889..>580893)
location: region:579889-580893:-1
so has part: feature:579889-580893:-1:exon
subclass of: SO_0000010

30035963
type: Gene
SIO_000068: ncbigene

position:579889:-1
position: 579889
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:580893:-1
position: 580893
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:579889-580893:-1:exon

AWJ20_3892
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RCO1
locus tag: AWJ20_3892
product: Rco1p
transcript id: XM_018880930.1
SIO_010081: AWJ20_3892
subclass of: SO_0000673
so part of: AWJ20_3892
location: complement(<579889..>580893)
location: region:579889-580893:-1
so has part: feature:579889-580893:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:579889-580893:-1:exon

AWJ20_3892
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RCO1
locus tag: AWJ20_3892
note: Essential component of the Rpd3S histone deacetylase complex; interacts with Eaf3p; GO_component: GO:0032221 - Rpd3S complex [Evidence IDA] [PMID 16286007]; GO_component: GO:0032221 - Rpd3S complex [Evidence IDA] [PMID 16286008]; GO_component: GO:0000118 - histone deacetylase complex [Evidence IDA] [PMID 16286008]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0016575 - histone deacetylation [Evidence IMP] [PMID 16286007]; GO_process: GO:0060195 - negative regulation of antisense RNA transcription [Evidence IMP] [PMID 21248844]; GO_process: GO:0030174 - regulation of DNA-dependent DNA replication initiation [Evidence IMP] [PMID 19417103]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IGI] [PMID 19948887]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0061587 - transfer RNA gene-mediated silencing [Evidence IMP] [PMID 23707796]
codon start: 1
product: Rco1p
translation: MNQLGEYEDEIPKVNKPKATSKDENDPLKLLDKNGRPRMCYRCNESALRGTMVSCDVCPLNWHVDCLPSPTWTIGSRWKCPNHADQATKLPRRPRKYKVVDTVLQRGFKNDGNVEVLDSSDEEEEGFVQDIPFFDNYDTRIGVASRINKGSEKTFLSNGVLYRLPSRGIKLDFIEAVHDSYDEPYPDSIRSDILVALDELATKSLDVQQAVRNLAYLQSDGDPSVKVAIGKENINVLVSAALEELPDSNPAPQGPSVYIKPDTGSPSPPRHTNGRSSARSSLAGSVTDSDRDALTSNSSVDDEVLDSERDQLRIIKRLMQIKGKDKLVKFLLEK
SIO_010081: AWJ20_3892
subclass of: SO_0000673
so part of: AWJ20_3892
location: complement(579889..580893)
location: region:579889-580893:-1
so has part: feature:579889-580893:-1:exon

XP_018733572.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:579889-580893:-1:exon

AWJ20_3893
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MAP2
locus tag: AWJ20_3893
so part of: sequence
location: complement(<583659..>585271)
location: region:583659-585271:-1
so has part: feature:583659-585271:-1:exon
subclass of: SO_0000010

30035964
type: Gene
SIO_000068: ncbigene

position:583659:-1
position: 583659
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:585271:-1
position: 585271
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:583659-585271:-1:exon

AWJ20_3893
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MAP2
locus tag: AWJ20_3893
product: Map2p
transcript id: XM_018880931.1
SIO_010081: AWJ20_3893
subclass of: SO_0000673
so part of: AWJ20_3893
location: complement(join(<583659..584782,585259..>585271))
location: region:583659-585271:-1
so has part: feature:585259-585271:-1:exon
so has part: feature:583659-584782:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:585259-585271:-1:exon

position:585259:-1
position: 585259
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:583659-584782:-1:exon

position:584782:-1
position: 584782
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

AWJ20_3893
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MAP2
locus tag: AWJ20_3893
note: Methionine aminopeptidase; catalyzes the cotranslational removal of N-terminal methionine from nascent polypeptides; function is partially redundant with that of Map1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0070006 - metalloaminopeptidase activity [Evidence IEA]; GO_function: GO:0070006 - metalloaminopeptidase activity [Evidence IGI,ISA] [PMID 8618900]; GO_function: GO:0008235 - metalloexopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0070084 - protein initiator methionine removal [Evidence IEA]; GO_process: GO:0035551 - protein initiator methionine removal involved in protein maturation [Evidence IMP] [PMID 11811952]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]
codon start: 1
product: Map2p
translation: MSTEPDYSLSNSDVVTKYKTAGDISAKVLANIKALAVEGAKIIDLTTEGDRQLLEETSKIYKGKKDIIKGIAFPTSVSPNNVVAHLSPLPTDKEAEITLKAGDVVKITLGAQVDGFASIVGDTVVVGGGEVSGPVADAIAAAWYATEAAIRTIKPGNKNWDVTKIVDKVTSEYGVKALEGMLSNEQSRNVVDGKKRIILNPSESQRREFETFTFEEGEVYGVDILVSTGDGKSRADETPTTVYKKADITYQLKLRTSRATFSEVQKKAGSFPFSLRSLDDAKKARMGLQECQNHGLIIPYEVFYEKEGQTVVQFFTTIALTKTGTIKFAGPVTPDFAKIKTDKKVTDESVLDVLSKPLKASKKNKKKAADAAAAPASA
SIO_010081: AWJ20_3893
subclass of: SO_0000673
so part of: AWJ20_3893
location: complement(join(583659..584782,585259..585271))
location: region:583659-585271:-1
so has part: feature:585259-585271:-1:exon
so has part: feature:583659-584782:-1:exon

XP_018733573.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:585259-585271:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:583659-584782:-1:exon

AWJ20_3894
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ARG7
locus tag: AWJ20_3894
so part of: sequence
location: <597377..>598729
location: region:597377-598729:1
so has part: feature:597377-598729:1:exon
subclass of: SO_0000010

30035965
type: Gene
SIO_000068: ncbigene

position:597377:1
position: 597377
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:598729:1
position: 598729
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:597377-598729:1:exon

AWJ20_3894
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ARG7
locus tag: AWJ20_3894
product: glutamate N-acetyltransferase
transcript id: XM_018880932.1
SIO_010081: AWJ20_3894
subclass of: SO_0000673
so part of: AWJ20_3894
location: <597377..>598729
location: region:597377-598729:1
so has part: feature:597377-598729:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:597377-598729:1:exon

AWJ20_3894
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ARG7
locus tag: AWJ20_3894
inference: similar to AA sequence:KEGG_Orthology:K00620
note: Mitochondrial ornithine acetyltransferase; catalyzes the fifth step in arginine biosynthesis; also possesses acetylglutamate synthase activity, regenerates acetylglutamate while forming ornithine; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA,IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 205532]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004042 - acetyl-CoA:L-glutamate N-acetyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004042 - acetyl-CoA:L-glutamate N-acetyltransferase activity [Evidence IDA,IGI] [PMID 9428669]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004358 - glutamate N-acetyltransferase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0004358 - glutamate N-acetyltransferase activity [Evidence IDA] [PMID 9428669]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence IEA,IEA,IEA,IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence TAS] [PMID 12603335]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006592 - ornithine biosynthetic process [Evidence IDA] [PMID 9428669]
codon start: 1
product: glutamate N-acetyltransferase
translation: MLSAVRSGRLIQRLAVGGRGPRQFSTSTVALVADKSKYVPSSGIYPQGYKVGAIHCGVKKNAEALDLSVLVSETPCSGAAVFTTNIFQAAPVQVSKKVLSSTKGTGIRSIIVNSGCANAVTGEGGLKDAEAMVSTTDRVVGVTSGPASLVMSTGVIGQRLPIDKILNGIPSLIESNLGTDHNAWVTCARGICTTDTFPKLTSKEFSIGSNTYRIAGLAKGAGMIHPNMATLLGFFVTDAPVSQDALHDALKYATDRSFNSISVDGDMSTNDTIAALANGAAGGPVITKDSDSYEVLRSVITEFAEELAQLVVRDGEGATKFVTIKVEDALNFADAKQVASSIATSSLVKTALYGKDANWGRILCATGYAGVPVEPFKTSVSFIPTDGTAELKLLVNGEPEQVDEERASEILALEDLEIKVSLGTGGGASAKFWTCDLSHEYVTINGDYRS
SIO_010081: AWJ20_3894
subclass of: SO_0000673
so part of: AWJ20_3894
location: 597377..598729
location: region:597377-598729:1
so has part: feature:597377-598729:1:exon

XP_018733574.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:597377-598729:1:exon

AWJ20_3895
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3895
so part of: sequence
location: complement(<597652..>598059)
location: region:597652-598059:-1
so has part: feature:597652-598059:-1:exon
subclass of: SO_0000010

30035966
type: Gene
SIO_000068: ncbigene

position:597652:-1
position: 597652
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:598059:-1
position: 598059
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:597652-598059:-1:exon

AWJ20_3895
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3895
product: Ecm40p
transcript id: XM_018880933.1
SIO_010081: AWJ20_3895
subclass of: SO_0000673
so part of: AWJ20_3895
location: complement(<597652..>598059)
location: region:597652-598059:-1
so has part: feature:597652-598059:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:597652-598059:-1:exon

AWJ20_3895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3895
codon start: 1
product: Ecm40p
translation: MLGWIIPAPLARPAMRYVLDPMENSLDVSLGNVSVVQMPRAQVTHALWSVPRFDSMSDGMPFRILSIGNLWPITPVDMTNEAGPDVTPTTLSVVETMASASFKPPSPVTALAQPLLTIIDRIPVPLVLDRTFLET
SIO_010081: AWJ20_3895
subclass of: SO_0000673
so part of: AWJ20_3895
location: complement(597652..598059)
location: region:597652-598059:-1
so has part: feature:597652-598059:-1:exon

XP_018733575.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:597652-598059:-1:exon

AWJ20_3896
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3896
so part of: sequence
location: complement(<602256..>604001)
location: region:602256-604001:-1
so has part: feature:602256-604001:-1:exon
subclass of: SO_0000010

30035967
type: Gene
SIO_000068: ncbigene

position:602256:-1
position: 602256
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:604001:-1
position: 604001
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:602256-604001:-1:exon

AWJ20_3896
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3896
product: hypothetical protein
transcript id: XM_018880934.1
SIO_010081: AWJ20_3896
subclass of: SO_0000673
so part of: AWJ20_3896
location: complement(<602256..>604001)
location: region:602256-604001:-1
so has part: feature:602256-604001:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:602256-604001:-1:exon

AWJ20_3896
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3896
inference: similar to AA sequence:KEGG_Orthology:K15029
codon start: 1
product: hypothetical protein
translation: MEDYEYDDFEAGNETIAVGEHVYDEAALLRQQEALMEAARKAAYVPEAIKEFILYFQKCLHEKNVYELLSCYDNSFRKLTEKFYKNLPWPSPELAVAPIVNNDQTFLLFYKELYYRHLYAKGQPTIEQRLDSYHNYCTLFDFIINSETPTDIELPTQWCWDMIDEFIYQFNSFSIFRSRLIKKGNASQADLELLEKNVGVWGAYPVLNVLYSLAGKANITAQLKATKNGQDATQVAGPFGSKPLYNTLGYFSLIGLLRVHTLLGDYALALKTLEDVQLNKRALLSRVTGAHYTTYYYVGFCYLMLRRYADAIKSFSHILVFISRTKNINRNAQFDNVNKKSDQMYALLAICVALCPTRLDDIIHTGMREKYGEQLSKMNRGGPDALKTFEELFVFAAPKFISPTPPDFEHPEYNVEPLQHHLKIFLETVKTANLGYTLKNYLNLYATMDIRKLSGFLETDVELLRSALVSFKIKNKQTKWTEGALLDGESVNVSEIDIALDNDLIHIAESKDGRKFADWFIRNTLKNYTAQEFIANPDSKQDQQHDKSKKQHNRPKKDTNNTKKDSTPAPSTSSSAPVAAK
SIO_010081: AWJ20_3896
subclass of: SO_0000673
so part of: AWJ20_3896
location: complement(602256..604001)
location: region:602256-604001:-1
so has part: feature:602256-604001:-1:exon

XP_018733576.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:602256-604001:-1:exon

AWJ20_3897
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SNU13
locus tag: AWJ20_3897
so part of: sequence
location: complement(<605282..>605665)
location: region:605282-605665:-1
so has part: feature:605282-605665:-1:exon
subclass of: SO_0000010

30035968
type: Gene
SIO_000068: ncbigene

position:605282:-1
position: 605282
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:605665:-1
position: 605665
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:605282-605665:-1:exon

AWJ20_3897
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SNU13
locus tag: AWJ20_3897
product: RNA binding protein SNU13
transcript id: XM_018880935.1
SIO_010081: AWJ20_3897
subclass of: SO_0000673
so part of: AWJ20_3897
location: complement(<605282..>605665)
location: region:605282-605665:-1
so has part: feature:605282-605665:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:605282-605665:-1:exon

AWJ20_3897
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SNU13
locus tag: AWJ20_3897
inference: similar to AA sequence:KEGG_Orthology:K12845
note: RNA binding protein; part of U3 snoRNP involved in rRNA processing, part of U4/U6-U5 tri-snRNP involved in mRNA splicing, similar to human 15.5K protein; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10377396]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10449419]; GO_component: GO:0031428 - box C/D snoRNP complex [Evidence IDA] [PMID 11081632]; GO_component: GO:0005730 - nucleolus [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10684247]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA,IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IMP,ISS] [PMID 14730029]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 17332014]; GO_function: GO:0003723 - RNA binding [Evidence IPI] [PMID 17631273]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 10377396]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 11720284]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 14730029]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 14730029]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA,IEA]
codon start: 1
product: RNA binding protein SNU13
translation: MSTNADPRAFPLASSDVTQQILDIVQQATHLRQLKKGANEATKTLNRGISEFIVMAADASPIEIVLHLPLLCEDKNVPYVFVPSKIALGRACGVSRPVIAASVTSNDASQLRDQINGIKDVIERLLI
SIO_010081: AWJ20_3897
subclass of: SO_0000673
so part of: AWJ20_3897
location: complement(605282..605665)
location: region:605282-605665:-1
so has part: feature:605282-605665:-1:exon

XP_018733577.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:605282-605665:-1:exon

AWJ20_3898
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3898
so part of: sequence
location: <606664..>608376
location: region:606664-608376:1
so has part: feature:606664-608376:1:exon
subclass of: SO_0000010

30035969
type: Gene
SIO_000068: ncbigene

position:606664:1
position: 606664
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:608376:1
position: 608376
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:606664-608376:1:exon

AWJ20_3898
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3898
product: hypothetical protein
transcript id: XM_018880936.1
SIO_010081: AWJ20_3898
subclass of: SO_0000673
so part of: AWJ20_3898
location: <606664..>608376
location: region:606664-608376:1
so has part: feature:606664-608376:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:606664-608376:1:exon

AWJ20_3898
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3898
codon start: 1
product: hypothetical protein
translation: MDSSARLTAYTIRYVLSPREYRKLVARLNTNVTRILPAPEKIDASAVRSGDGVQSIVRSQSRLFAASYGLLGLINAFILKRRGLNIPALRIATSLTAISGIYKVLYRVLTLLLQRTGILPRHGLSAKTTGSSTKSRVDSSPSPGTTDDPESTCSDAGYLDNSYKITKLLVRAGYFTKRTLKKTKHLPPLLPALLSGLVAGSAFALFPESAQGYAAIYLSTRTLEFVYNYLDDMGYLEFKPRILKSWAIFPFAFSQLFYTFIFHPDACPNIFRRIMLRLSDGYIPTKPTGYPIDRPWPNPDQVVDGIATIARARYPKFVSPILFPNLDTTVPGLESAEPVLSLAHPAMSTLTGALSHPTQPSEFRTYTELVLSKYSSIYKYVFGAYVVLGLLKWRAHSKASSKTSEKNKLSSTDKASKKAAPSLPGILLSSVANTARTTTFIVMTAASSWYGIGLSQQVLNNKFIPVLRFRIIGFLAGLWAFADQVNGRARYMFAVRLALRSQWNVLSKDRRYAPLLKNGAAALFALSFAVLMAIFDLSPKSIPGPSLRKTLNWIKTNQYTDVTAEKEKDI
SIO_010081: AWJ20_3898
subclass of: SO_0000673
so part of: AWJ20_3898
location: 606664..608376
location: region:606664-608376:1
so has part: feature:606664-608376:1:exon

XP_018733578.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:606664-608376:1:exon

AWJ20_3899
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: APE1
locus tag: AWJ20_3899
so part of: sequence
location: <613092..>614648
location: region:613092-614648:1
so has part: feature:613092-614648:1:exon
subclass of: SO_0000010

30035970
type: Gene
SIO_000068: ncbigene

position:613092:1
position: 613092
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:614648:1
position: 614648
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:613092-614648:1:exon

AWJ20_3899
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: APE1
locus tag: AWJ20_3899
product: Ape1p
transcript id: XM_018880937.1
SIO_010081: AWJ20_3899
subclass of: SO_0000673
so part of: AWJ20_3899
location: <613092..>614648
location: region:613092-614648:1
so has part: feature:613092-614648:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:613092-614648:1:exon

AWJ20_3899
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: APE1
locus tag: AWJ20_3899
inference: similar to AA sequence:KEGG_Orthology:K01268
note: Vacuolar aminopeptidase yscI; zinc metalloproteinase that belongs to the peptidase family M18; often used as a marker protein in studies of autophagy and cytosol to vacuole targeting (CVT) pathway; protein increases in abundance and relative distribution to cytoplasmic foci increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 1400574]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0070006 - metalloaminopeptidase activity [Evidence IDA] [PMID 3882418]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence ISS] [PMID 2651436]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence ISS] [PMID 2689224]
codon start: 1
product: Ape1p
translation: MTSFRANPAFKNARQRKASSPESFEIVDSVSTNGNGSSESEKATIRGEFDPKLSSTQYTDLFLDFMNTSPTTYHAVNSVAEVLEAQGFVYLSERESWEDKITKSNRFYTTRNGSSLLAFVVGKDWAPGKGAAIIGSHIDALTGKVKPISKKTPVEGYEQIGTAPYSGAFNSTWWDRDLGIGGRIITRSKDTKKIESKLVRIPYPVARIPTLAPHFGAVASGPFNPETQMTPIIGLIGDEDPELVATADEKRSPLIGKHSLRLLRALSKHSGIPVGDFLQLDLEVYDTHPGTVGGLDKEFVFCPRIDDKLCSFAAVYGLLESLEKVDDNSSLSFVALYDDEEIGSLLRQGAESNLLEGTIDRLLALHGSSDEELKRLTYANSFLISADVIHAVNPNFDNVYLEHHKPKLNVGVTVSFDPNGHMTTDAVSTAFVEEIARRTDNVLQAFQIRNDSRSGGTIGPKLSSKTGLRAIDMGIPQLSMHSIRATTGSKDVYLGVKFFKAFFEKWEEVDVLFKLGDL
SIO_010081: AWJ20_3899
subclass of: SO_0000673
so part of: AWJ20_3899
location: 613092..614648
location: region:613092-614648:1
so has part: feature:613092-614648:1:exon

XP_018733579.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:613092-614648:1:exon

AWJ20_3900
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: AMF1
locus tag: AWJ20_3900
so part of: sequence
location: complement(<614915..>616768)
location: region:614915-616768:-1
so has part: feature:614915-616768:-1:exon
subclass of: SO_0000010

30035973
type: Gene
SIO_000068: ncbigene

position:614915:-1
position: 614915
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:616768:-1
position: 616768
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:614915-616768:-1:exon

AWJ20_3900
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: AMF1
locus tag: AWJ20_3900
product: Amf1p
transcript id: XM_018880940.1
SIO_010081: AWJ20_3900
subclass of: SO_0000673
so part of: AWJ20_3900
location: complement(<614915..>616768)
location: region:614915-616768:-1
so has part: feature:614915-616768:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:614915-616768:-1:exon

AWJ20_3900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: AMF1
locus tag: AWJ20_3900
note: Putative paralog of ATR1; but not required for boron tolerance; member of the DHA2 family of drug:H+ antiporters; YOR378W is not an essential gene; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Amf1p
translation: MTQLLEKKNGDVESLLQKEAASLDKTGSTGSGVESETQFDHQKTSKELVGGDGGGLENGLDHRLEHGMDSNLDSDPHGLDHEPDGGDSSEGGDEGSNGPESHRPNISYSREYLLILVIISAQLMTQASVAQGLSIGREIGLHFNTTDAGQLSWYVAGFSLTAGTFIVSSGRLGEIYGHKNLFVIGYAWLFVFTLIAGISSYSNSSIFFSVCRGLQGLGCAILLPNGLAIFGMLYPAGSRKNIVFALFGAVAPGGFVLGAIFSTLLAKHRWDFTFYVGSIVCFLLTIAAYVIIPNYENKSNHDRQPFDILGALTGIGGLMLFNVAWNQGPVVGWSDPYVYILLILGVLLFVAFGIVETRVSHPLVPVSTMKSSTILILTAVACGWACFGIWLYYTWQLFTVLRQQTPLLAAVEMLPALFGGFLASGAAAFLFPRIPVSVLMAMALVGFCVPSILLATNRVHETYWAASFVATVIAPFGKCFGDLPPAAWALPQTPLCSASQSGLDCGGSNNCVFYVSNFVAGMDISFPAATILLSLSVPKESQGIAASLVATVVNYAISIGLGIAGTVVRYTTPGTDEQSLLNAVRYSAYLGIGLSSLGLIFALIAVWQDRKNLSRPH
SIO_010081: AWJ20_3900
subclass of: SO_0000673
so part of: AWJ20_3900
location: complement(614915..616768)
location: region:614915-616768:-1
so has part: feature:614915-616768:-1:exon

XP_018733580.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:614915-616768:-1:exon

AWJ20_3901
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: DAL5
locus tag: AWJ20_3901
so part of: sequence
location: <619297..>620592
location: region:619297-620592:1
so has part: feature:619297-620592:1:exon
subclass of: SO_0000010

30035974
type: Gene
SIO_000068: ncbigene

position:619297:1
position: 619297
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:620592:1
position: 620592
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:619297-620592:1:exon

AWJ20_3901
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: DAL5
locus tag: AWJ20_3901
product: allantoate permease
transcript id: XM_018880941.1
SIO_010081: AWJ20_3901
subclass of: SO_0000673
so part of: AWJ20_3901
location: <619297..>620592
location: region:619297-620592:1
so has part: feature:619297-620592:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:619297-620592:1:exon

AWJ20_3901
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: DAL5
locus tag: AWJ20_3901
note: Allantoate permease; ureidosuccinate permease; also transports dipeptides, though with lower affinity than for allantoate and ureidosuccinate; expression is constitutive but sensitive to nitrogen catabolite repression; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IMP,ISS] [PMID 3275614]; GO_function: GO:0015124 - allantoate transmembrane transporter activity [Evidence IMP,ISS] [PMID 3275614]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IMP] [PMID 16429164]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IGI,IMP] [PMID 17693598]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015719 - allantoate transport [Evidence IMP] [PMID 3275614]; GO_process: GO:0042938 - dipeptide transport [Evidence IMP] [PMID 16429164]; GO_process: GO:0042938 - dipeptide transport [Evidence IGI,IMP] [PMID 17693598]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0042939 - tripeptide transport [Evidence IMP] [PMID 16429164]
codon start: 1
product: allantoate permease
translation: MGFKEDLNLVGNDFSFLGMFFYVGFLAAELPTQWLAQRISFLGKYLGINVTLWGVVLACHAACNSYAQVAVLRTLLGIFEACVAPILVLIICMWYKKQEQGKRVACFYVMNSFTSVAAGLIAYGASFTKSSFASWRIFLLCMGLVTVVCGVLVFLYLPDSPTKAKGFTDEEKLAVLLRIKDDQSGTQNNKLKGYQMLEAVSDPKVWLVVLSVMLISIPNGALSIFSSLIVNSFGFSAQETLIVGVPGGLLSGFWLLAVQYYSDKTQNRTLMNLCYLLPAILGLALMVGLENREKTTAMKTGLLISNYLSQTFGGTLALILSWNASNVAGHSKKVLVNALTFIAFPLGNIIGTQTFQAKDAPMYMPGKAAILGCLSLQCFITVGWYFLNQFYNNKKQRVLDEMDPEQRETMRRQMEFSDETDMRNPFFRYTK
SIO_010081: AWJ20_3901
subclass of: SO_0000673
so part of: AWJ20_3901
location: 619297..620592
location: region:619297-620592:1
so has part: feature:619297-620592:1:exon

XP_018733581.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:619297-620592:1:exon

AWJ20_3902
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PAT1
locus tag: AWJ20_3902
so part of: sequence
location: <623341..>626019
location: region:623341-626019:1
so has part: feature:623341-626019:1:exon
subclass of: SO_0000010

30035975
type: Gene
SIO_000068: ncbigene

position:623341:1
position: 623341
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:626019:1
position: 626019
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:623341-626019:1:exon

AWJ20_3902
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PAT1
locus tag: AWJ20_3902
product: Pat1p
transcript id: XM_018880942.1
SIO_010081: AWJ20_3902
subclass of: SO_0000673
so part of: AWJ20_3902
location: <623341..>626019
location: region:623341-626019:1
so has part: feature:623341-626019:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:623341-626019:1:exon

AWJ20_3902
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PAT1
locus tag: AWJ20_3902
inference: similar to AA sequence:KEGG_Orthology:K12617
note: Deadenylation-dependent mRNA-decapping factor; also required for faithful chromosome transmission, maintenance of rDNA locus stability, and protection of mRNA 3'-UTRs from trimming; associated with topoisomerase II; binds to mRNAs under glucose starvation, most often in the 3' UTR; functionally linked to Pab1p; forms cytoplasmic foci upon DNA replication stress; phosphorylation by PKA inhibits P body foci formation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23706738]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IEA]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA,IMP] [PMID 12730603]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 23222640]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 10779343]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23706738]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 23706738]; GO_function: GO:0003729 - mRNA binding [Evidence IDA,IDA] [PMID 23222640]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0033962 - cytoplasmic mRNA processing body assembly [Evidence IGI,IMP] [PMID 18981231]; GO_process: GO:0000290 - deadenylation-dependent decapping of nuclear-transcribed mRNA [Evidence IMP,IPI] [PMID 10913177]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IMP] [PMID 20832728]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0045947 - negative regulation of translational initiation [Evidence IDA,IMP] [PMID 20832728]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006446 - regulation o…
codon start: 1
product: Pat1p
translation: MSFFGVKTASSGGEAAVYEFDDTYDDNLGAALEETNDDFNDETFGDFGDGVGNDFDFAGQTANVADTIDEEQFTFARNAGGKLGSVSGAGGAGGSGLNLLPSTTGSVPSLQPIASLWGTAGVDKKPEPQPAAQQQQPQQPQQPKILSLEEVEAQMLGKSQQQLPHGVLPQPPQGFPPQGFPPQGFFPQGFPPQGFPPQGFPGQGFPQVPQGYPPQGFPPQGYPLPQDPAVLMSSGYYGSGAGPTPGQPGLGQPGQPGQPPHQQQIPGQQQLQQQQQQPQQQQQAQFQQPPAGQSVQADSAIKQIEGQLAQTSVQDQGQSQGQRPQGAHGQEANAQNNAQGNAQTPYSLPQQVQQGQQPVVPLNQVINEDLAQSEAEHQRMFEKSRKIAEIVKYNGLMSQWDKNFIMRIQLQQMVTADPYNEDFYYQVHSAIQARNNPQQPLNEFARTYLLQRGQRGNGRFRRHNDNPLQRMQQQVQRAVAAAKEHPKKEQIAPEGALGKISVGGGKQPRKALNVAGSASNIPSSPSTSSSAKVEALKKLTLTSSTSQSGTYTKKGLLRSIENVYTILLEIESVERSRPSEDFNDQQQQQHQQQAAEDVADSDSSPAATPASVVSYEERLQTWQDKMQTLVDQLWNELQVLEPIDSANNQPFILMLSHDKGKKVIPRIFRHLSQKQRLTVLTRIVAHIESLDVVKDGDYGSSGTLSAKTRESIELFSQTVLPPLVHLVSESSYDVVIGLLEIMLNSSNMVHVSSTKIGLAFLTVLISRAELISQEESEAATPSAAATRDLANWQATFNTLFTKVQGHLSSIFPPRNVDNSYVWHFLASLALAAKLEHQRIIVDEVREMIFGTMNEAKALPVELGVSKIANLNLFLNVMGLNATTTEITELSSQ
SIO_010081: AWJ20_3902
subclass of: SO_0000673
so part of: AWJ20_3902
location: 623341..626019
location: region:623341-626019:1
so has part: feature:623341-626019:1:exon

XP_018733582.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:623341-626019:1:exon

AWJ20_3903
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ACP1
locus tag: AWJ20_3903
so part of: sequence
location: <626975..>627202
location: region:626975-627202:1
so has part: feature:626975-627202:1:exon
subclass of: SO_0000010

30035976
type: Gene
SIO_000068: ncbigene

position:626975:1
position: 626975
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:627202:1
position: 627202
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:626975-627202:1:exon

AWJ20_3903
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ACP1
locus tag: AWJ20_3903
product: Acp1p
transcript id: XM_018880943.1
SIO_010081: AWJ20_3903
subclass of: SO_0000673
so part of: AWJ20_3903
location: <626975..>627202
location: region:626975-627202:1
so has part: feature:626975-627202:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:626975-627202:1:exon

AWJ20_3903
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ACP1
locus tag: AWJ20_3903
inference: similar to AA sequence:KEGG_Orthology:K03955
note: Mitochondrial matrix acyl carrier protein; involved in biosynthesis of octanoate, which is a precursor to lipoic acid; activated by phosphopantetheinylation catalyzed by Ppt2p; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0070469 - respiratory chain [Evidence IEA]; GO_function: GO:0000036 - ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process [Evidence ISS] [PMID 8394042]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0009107 - lipoate biosynthetic process [Evidence IMP] [PMID 9187370]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]
codon start: 1
product: Acp1p
translation: MARSIETNMLQIADPSKITPSANFSTDLGLDSLDVVDALFFIEEEFNIEIPDHEADEIHTVAQAVDYILAQPDGK
SIO_010081: AWJ20_3903
subclass of: SO_0000673
so part of: AWJ20_3903
location: 626975..627202
location: region:626975-627202:1
so has part: feature:626975-627202:1:exon

XP_018733583.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:626975-627202:1:exon

AWJ20_3904
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PCS60
locus tag: AWJ20_3904
so part of: sequence
location: <629147..>630802
location: region:629147-630802:1
so has part: feature:629147-630802:1:exon
subclass of: SO_0000010

30035977
type: Gene
SIO_000068: ncbigene

position:629147:1
position: 629147
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:630802:1
position: 630802
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:629147-630802:1:exon

AWJ20_3904
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PCS60
locus tag: AWJ20_3904
product: Pcs60p
transcript id: XM_018880944.1
SIO_010081: AWJ20_3904
subclass of: SO_0000673
so part of: AWJ20_3904
location: <629147..>630802
location: region:629147-630802:1
so has part: feature:629147-630802:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:629147-630802:1:exon

AWJ20_3904
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PCS60
locus tag: AWJ20_3904
note: Oxalyl-CoA synthetase; capable of catalyzing conversion of oxalate to oxalyl-CoA; catalyzes first step in pathway of oxalate degradation that functions to protect yeast from inhibitory effects of oxalate; peroxisomal protein that binds mRNA; localizes to both peroxisomal peripheral membrane and matrix, expression is highly inducible by oleic acid; similar to E. coli long chain acyl-CoA synthetase; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IEA]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 8841414]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 8841414]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 20844764]; GO_function: GO:0050203 - oxalate-CoA ligase activity [Evidence IDA,IMP] [PMID 24291261]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0033611 - oxalate catabolic process [Evidence IDA,IMP] [PMID 24291261]
codon start: 1
product: Pcs60p
translation: MSTSSSTPSSPPVIHKSPWGEVPDLFVGNIAQFVRESPHINRKLDKKILIDAKTNQAIRGRQLFNFTARLSWVLRTKYKIEYDDVVCLFAPNSVWTPIIHHGVLSRGAILSPANIAYNPEELHYQIKTANAKLALVGDAHLETARKALKVGPNNCVKIVPISRLIKDIKFAKGVENPVPLEGDVAKDKIAYLCFSSGTSGTPKGVMTTHYNMTSNAQQQFYCFNKALLNGNNVYGAVLPMSHIFGLTKFVYSTLYVASTIVVFEKFDFPLLLSSILKYNINVLHVVPPILVLFAKSPLVDKYAIKGRLNHIFTGAAPAGKEIIALAEARTGAHISQGYGLTESSPVTHLYSYDEQAYDQNSIGWLIASCEARLVTDEGTDAAVGERGELWIRGPNIMKGYLNNPAATAETLTSDGFLKTGDVAIRVADGQYYIVDRKKELIKSKGHQVAPAELEALLLDHPDVVDVAVVGVHVSELGTELPRAFLVIREKTDPLEIKKWFDSKVARHKRLWGGIVVLDAIPKSPSGKILRRLLRDRKDDKAIGFTLAEPKL
SIO_010081: AWJ20_3904
subclass of: SO_0000673
so part of: AWJ20_3904
location: 629147..630802
location: region:629147-630802:1
so has part: feature:629147-630802:1:exon

XP_018733584.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:629147-630802:1:exon

AWJ20_3905
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: DBP6
locus tag: AWJ20_3905
so part of: sequence
location: complement(<631041..>632960)
location: region:631041-632960:-1
so has part: feature:631041-632960:-1:exon
subclass of: SO_0000010

30035978
type: Gene
SIO_000068: ncbigene

position:631041:-1
position: 631041
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:632960:-1
position: 632960
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:631041-632960:-1:exon

AWJ20_3905
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: DBP6
locus tag: AWJ20_3905
product: Dbp6p
transcript id: XM_018880945.1
SIO_010081: AWJ20_3905
subclass of: SO_0000673
so part of: AWJ20_3905
location: complement(<631041..>632960)
location: region:631041-632960:-1
so has part: feature:631041-632960:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:631041-632960:-1:exon

AWJ20_3905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: DBP6
locus tag: AWJ20_3905
inference: similar to AA sequence:KEGG_Orthology:K14807
note: Essential protein involved in ribosome biogenesis; putative ATP-dependent RNA helicase of the DEAD-box protein family; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 9528757]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 15126390]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17145778]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence ISS] [PMID 10322435]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9528757]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9528757]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]
codon start: 1
product: Dbp6p
translation: MFLATKRFDPNFTSQREEDDQPEPKKVKLDKELIKKDVVPSSLSSENNPAKSNTPIETNSLDSSHVSSSKSVLEESDDSESEYEVDPKYSAVFKRFQDIASKAAKNNVRTSRLADQEAISKDSENNQEEPDEEEIPEVNELVPLPQIARKKESSKKHKEPPKWITEPIIIPLNASKPFAEYEKEHLLSARMVKVLQSLNYESAFAVQTGVCPVLLKDSQSIAPDPLPDVLVNAYTGSGKTLAYGIPIVEALSKRVVPRIRALILLPTRPLIQQVRNVLESLAKGTSLRVMICRTDRPFKEEQALISSHTPDILITTPGRLVDHIRNNTQGFSLNHLQYLVVDEADRLLNQSFQEWVSVLVNALEAAKPKESLAKVWNRPPQKLIFSATLTRDPGKLAALNITTTPTPRIFVLGEEPVVNNGHTNTTSGPSVHEDRQRIMMDYEFSLPEKLQEHHIQVKSASNKPLVLLQLLINHSLHSDTLIFVKSNQAAARLARLIQLIDEELFHLNLSVERCSGELELSQRRKMLKKFADGEIGILVCTDLIARGIDIASVKAVINYDLPVGKREYVHRVGRTARAGNSGAAWNLTVGSGERKFFNSITTSIFRTGEIESEVIKPSPDHNDGYQKALSRLEQEVFAK
SIO_010081: AWJ20_3905
subclass of: SO_0000673
so part of: AWJ20_3905
location: complement(631041..632960)
location: region:631041-632960:-1
so has part: feature:631041-632960:-1:exon

XP_018733585.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:631041-632960:-1:exon

AWJ20_3906
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_3906
so part of: sequence
location: <635645..>637453
location: region:635645-637453:1
so has part: feature:635645-637453:1:exon
subclass of: SO_0000010

30035979
type: Gene
SIO_000068: ncbigene

position:635645:1
position: 635645
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:637453:1
position: 637453
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:635645-637453:1:exon

AWJ20_3906
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_3906
product: 1-phosphatidylinositol-4-phosphate 5-kinase
transcript id: XM_018880946.1
SIO_010081: AWJ20_3906
subclass of: SO_0000673
so part of: AWJ20_3906
location: <635645..>637453
location: region:635645-637453:1
so has part: feature:635645-637453:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:635645-637453:1:exon

AWJ20_3906
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_3906
inference: similar to AA sequence:KEGG_Orthology:K00889
note: Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]
codon start: 1
product: 1-phosphatidylinositol-4-phosphate 5-kinase
translation: MGAFFFSNGDYLPSNGTHKVPRRPVLSDVHCGVSVPKYGACAQLENRHPARRSAFAYHKVLILECSDDSGVSVGSDETLNEPTVWKPVDIVAEQAYCEFAPIDNDSDNSSEWSFEAGDEAAFTTRQIESAWSEENTEAIWSAPAASWALSDCPIEIDENDPSPESHGDITLVESSLEASRKYLAESEEITPVNVAETPCAIADIPSSSSLIDSLVAEIIAVATLYKDLPQLIVSGGLQAEPDSELPNTAPLAPSKSIAQTLSGDLVIQVEEVDKSKTPLLLKRAKAKLTSFAGHAAPILKSTLMFNGVQTAAYATPLSSQEALTMENKNYRLDGGAIIKAYSPIVYQDIRTLCGIDYHEFLDSFVLQSDLTKTKSPGKSGSDFLFTPNGKYIIKTIKRKEHKVIANADFLADYYNHIKAHPSTQLPFYLGNYTLVADGKKTHFIIMKNLLQKETDLIYDLKGSSHDRRAGPRKDNRGRVVFKDLDWTDKHEAISMSQKDRDKLLVQVSKDVDFLKRHNIMDYSLLVGFQSDTRTCEQQPVIGMIDTLCPFSWRKRAETVSKSLFFGSSAIDVVHPEKYGARFLNFVQSAVVPEPSRSVSTRY
SIO_010081: AWJ20_3906
subclass of: SO_0000673
so part of: AWJ20_3906
location: 635645..637453
location: region:635645-637453:1
so has part: feature:635645-637453:1:exon

XP_018733586.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:635645-637453:1:exon

AWJ20_3907
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: POL90
locus tag: AWJ20_3907
so part of: sequence
location: complement(<655603..>658500)
location: region:655603-658500:-1
so has part: feature:655603-658500:-1:exon
subclass of: SO_0000010

30035980
type: Gene
SIO_000068: ncbigene

position:655603:-1
position: 655603
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:658500:-1
position: 658500
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:655603-658500:-1:exon

AWJ20_3907
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: POL90
locus tag: AWJ20_3907
product: polyprotein of L1-like non-LTR retrotransposon Zorro 1
transcript id: XM_018880947.1
SIO_010081: AWJ20_3907
subclass of: SO_0000673
so part of: AWJ20_3907
location: complement(<655603..>658500)
location: region:655603-658500:-1
so has part: feature:655603-658500:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:655603-658500:-1:exon

AWJ20_3907
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: POL90
locus tag: AWJ20_3907
note: polyprotein of non-LTR retrotransposon Zorro 1 and repeat region-related DNA
codon start: 1
product: polyprotein of L1-like non-LTR retrotransposon Zorro 1
translation: MSEDIHPVEYYKTLLPQIPELIIIAGDFNLHHPMWQSTEQVTREANSWADWVNDNGLLLATVPNVPTHIFGNTIDLTFATPNITITPEKSEDVGSDHYLQKWRIDTNPLDIELLQTYGGRYNYKRADWEKFEKVLDSRAALITIPKKLRGYSNRKSTHKVADRYATQLIGLLCDCLDEAVPKLKIVPRSKRWWTPELRQAKRDAVRARRRARSQPTEENRRLRQQANEEYASKILEAKTNTWNSYLASCRGTDIYDALKMIKPREPVPIMPALRLETGELAQTFEEQEEELYRGLFPQVKPSTRRLLKVVKTGQWKSLRMQEIEDAIRDQAPNKAPGPDGVKTVAIKRAWTVIRFRKLLKGLLQYCVRVGYHPKCFREGITVVIPKRKRDPALARSYRPITLLSTLGKVLEKIMQRRLTALTSGMLPVDQYGGRHGYSAVEAAHKLVHHAEKRMKRDQVTSVLAIDIKGAFDHVHRDTLLNTMGGMGLPTAVQNWVYQFMRGRRTSLVIDGKRTKERRIATGIPQGSPISPLLFLIYTSPLYPLIKSMGGKVIGFIDDITIYVSSTRYAENTAKLSNILARCHEWATSAHAFIDYGEKLGFMHIAKRVTPKGCRRLILPTGERIQATSSLKLLGVTIDRQLKFEEHAKSVINKGQSALNVIRRLGGVTRGVTGATMRCLYKSCVRSILEYASPIWYNRIRKGLKDAIQRIQNAALRSILGAYKPTAIVSLHRDAEISPIEHRMLETEQYYLVRLHRDLHRYNPHRIRARKLYSGTMLGDRLDELYRTVEVTDIKKDRYRLWKPPWASRDSEAISKASSQKKSIRKEIRSQCYQKWEIEYTQSPKGAFYRSFTAPRLYSKKHANALRPFLYESPRGELSKLVQLRTGMGAMGSFFQRFRISNRRYDCRCGVEETVEHILRDCPLTEQHRPILRDASRELDLPSLLDTRKGLKAVASFLKANPSLLS
SIO_010081: AWJ20_3907
subclass of: SO_0000673
so part of: AWJ20_3907
location: complement(655603..658500)
location: region:655603-658500:-1
so has part: feature:655603-658500:-1:exon

XP_018733587.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:655603-658500:-1:exon

AWJ20_3908
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3908
so part of: sequence
location: <661076..>661161
location: region:661076-661161:1
so has part: feature:661076-661161:1:exon
subclass of: SO_0000663

30035981
type: Gene
SIO_000068: ncbigene

position:661076:1
position: 661076
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:661161:1
position: 661161
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:661076-661161:1:exon

AWJ20_3908
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_3908
product: tRNA-Pro
SIO_010081: AWJ20_3908
subclass of: SO_0000673
so part of: AWJ20_3908
location: <661076..>661161
location: region:661076-661161:1
so has part: feature:661076-661161:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:661076-661161:1:exon

AWJ20_3909
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3909
so part of: sequence
location: <664264..>665214
location: region:664264-665214:1
so has part: feature:664264-665214:1:exon
subclass of: SO_0000010

30035982
type: Gene
SIO_000068: ncbigene

position:664264:1
position: 664264
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:665214:1
position: 665214
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:664264-665214:1:exon

AWJ20_3909
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3909
product: hypothetical protein
transcript id: XM_018880948.1
SIO_010081: AWJ20_3909
subclass of: SO_0000673
so part of: AWJ20_3909
location: <664264..>665214
location: region:664264-665214:1
so has part: feature:664264-665214:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:664264-665214:1:exon

AWJ20_3909
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3909
codon start: 1
product: hypothetical protein
translation: MRSTSYTLALLSLGLASAAPVPQVPGGGAAAGLGGLVAGLGPVTNDLSNTVGDLKPAVASLEPAVEDLGADLGDASSSLSTRQVPGGGAAAGLGGLVAGLGPVTNDLSNTVGDLKPAVASLQPAVEDLGADLGDASSSLSTRQVPGGGAAAGLGGLVAGLGPVTNDLSNTVGDLKPAVASLQPAVEDLGADLGDASSSLSTRQVPGGGAAAGLGGLVAGLGPVTNDLSNTVGDLKPAVASLEPAVEDLGADLGDASSSLSTRQVPGGGAAAGLGGLVAGLGPVTNDLSNTVEDLKPAVASLEPAVEDLGADLGASS
SIO_010081: AWJ20_3909
subclass of: SO_0000673
so part of: AWJ20_3909
location: 664264..665214
location: region:664264-665214:1
so has part: feature:664264-665214:1:exon

XP_018733588.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:664264-665214:1:exon

AWJ20_3910
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: NUP85
locus tag: AWJ20_3910
so part of: sequence
location: <665497..>668793
location: region:665497-668793:1
so has part: feature:665497-668793:1:exon
subclass of: SO_0000010

30035984
type: Gene
SIO_000068: ncbigene

position:665497:1
position: 665497
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:668793:1
position: 668793
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:665497-668793:1:exon

AWJ20_3910
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: NUP85
locus tag: AWJ20_3910
product: Nup85p
transcript id: XM_018880950.1
SIO_010081: AWJ20_3910
subclass of: SO_0000673
so part of: AWJ20_3910
location: <665497..>668793
location: region:665497-668793:1
so has part: feature:665497-668793:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:665497-668793:1:exon

AWJ20_3910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: NUP85
locus tag: AWJ20_3910
inference: similar to AA sequence:KEGG_Orthology:K14304
note: Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC); contributes to nucleocytoplasmic transport and NPC biogenesis and is involved in establishment of a normal nucleocytoplasmic concentration gradient of the GTPase Gsp1p; also plays roles in several processes that may require localization of genes or chromosomes at the nuclear periphery, including double-strand break repair, transcription and chromatin silencing; homologous to human NUP85 aka NUP75; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0031080 - nuclear pore outer ring [Evidence IDA] [PMID 11823431]; GO_component: GO:0031080 - nuclear pore outer ring [Evidence IDA] [PMID 18046406]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IMP] [PMID 22331846]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 8565072]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 8816998]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 8565072]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 8816998]; GO_process: GO:0045893 - positive regulation of transcription, DNA-templated [Evidence IDA] [PMID 15817685]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 12730220]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IMP] [PMID 11071906]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Nup85p
translation: MDYNRLFQNKDRDAGDQESSSEPKPFSFNLGGDSTTGNALQNKPSGVGFNGLFSKQPENSYIDAQPLETNKLPDIGMVEHSIFGASATGAPPSFGAQSTETKSLFSNSSSSGSSQPPLFGGFGRSNNDQVSREQSSVVTNSSTQGNSIFGISTNNNNSSSSQTPSLFNKNTGPTFTSTSLFGSGSHEASVGSSGFNIQKPLSFSATSSATSESTQAPKSEKTEDLSSTLAGKNEGFKFGSGEKSGNSWSFSSTKANETTAGQKNDSRIGTGNTNIFNSISTGTNDSIFGQNSTAITNTGSVALPAFNLKGSASQSASDNISSQTARPSLFASSNSNEESRFGATDSGAPLAVPSIGLDLLSQVTSLDTNYPGRDTIESIDSGFLDYEPNMDSNNLETSQPSVSEFSTAPEFTLEDAPIQNGGLEHWHNMNRTLKFTISTVGNGGVAWIDRRNRDKQSIQNEPTGDIIQEEKKLFSANIPSQIPNSPGYIQFVKDCYNIVKECQDEIESDSSGPVNVVCKHYFNLLYNRILESLNYVEDDTQMMDVSFIVYCFLVVYFEANVKSESEPFAKAFSKWANTVDEGSSPEDAAEIMRMSPPTKHPLYWDFVHDRASRGLLEVCASTLQEANSKEMAADVRESIHYATQLLRSYPNEEGSEYKFHQWKRQCNIAHGHAQDIADPALRIQLVRLFDILRGHKATILEQNSNSWFVALSALVMFNDPSRSRLKEYFDIVQAEIPIDSLLKWESGCAAVISGDILVAIQKLESLDSCVATAVAQLCQMRGLLDDYGIVRINNEPSVRDWLVLSHGQNCITSEIPELEKIGINILVDLDIPQSRATLAEYLPRYVAHDVEELEWVLSTANELGLHDTERQIHRIAARNYAFNGCFLEAFFELDKAKDASALQALSWQLFEDSLVFNEPAAEDLTIQAVLPNSGVELSPLVHEIMAPFAVLNEAFELLRSEKYIQAGGRILALLRFPYLPGRFVAPLLSMIISLLSHNKQPRSFTSTDLVLVMDTLDMWEKQATNTKDHVDTSGYKEGLAIIERAVHTAKTEETLPLKNNDWRALLLSIPVEKIPDFIISTGRIVLAREVSRAYLSGL
SIO_010081: AWJ20_3910
subclass of: SO_0000673
so part of: AWJ20_3910
location: 665497..668793
location: region:665497-668793:1
so has part: feature:665497-668793:1:exon

XP_018733589.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:665497-668793:1:exon

AWJ20_3911
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3911
so part of: sequence
location: <670651..>672309
location: region:670651-672309:1
so has part: feature:670651-672309:1:exon
subclass of: SO_0000010

30035985
type: Gene
SIO_000068: ncbigene

position:670651:1
position: 670651
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:672309:1
position: 672309
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:670651-672309:1:exon

AWJ20_3911
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3911
product: hypothetical protein
transcript id: XM_018880951.1
SIO_010081: AWJ20_3911
subclass of: SO_0000673
so part of: AWJ20_3911
location: <670651..>672309
location: region:670651-672309:1
so has part: feature:670651-672309:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:670651-672309:1:exon

AWJ20_3911
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3911
codon start: 1
product: hypothetical protein
translation: MKKLWDSLKSNARYQAIVIGSGLVGLLYVILTSGLSLMSIKALVIALSYCYALIMALWLMGHGLVNVPRELWLRADVNVRLNNDYRHARSVCDAFADAQSSYVDVAAEITSIARFKDGSQHLEWIDELVEEVETTAFTIHSSAIAGHPTVNVDRSLLNEQYLSTLAARYYKYRARMIRHRASWQKLLKDCSIAEDIVNASRDTTNKELIFRYGRTMLPAKLARFYYVNINMYFVRTFAVLLAILSVAIIWSELVHGTVASLVNLVISVTYGVGQQLVSSIILGYMCIASFASLARIRVFNIYGLVHKGSDLSSLLFYASYACRLTVPLSYNYLTLIGSRESVFEEFLGKSINLTPLGKAFNDWLPRLILLPIIFTLFHVYDKVKDYFSFELGFDDDDEIGALNSSVIEGKELVNRALSDPNFRFAIDGAAPDSLSGANRGSPALNSRSSNEFGGIRASRDISRSSLLPTHNLSSSPSSRTFGGATSPRPWSSPQVNEFEEPTRLTESMNNVRSFFGNISQRVQSGISNIRQGDSVPRWARLSQSEDQDSQIL
SIO_010081: AWJ20_3911
subclass of: SO_0000673
so part of: AWJ20_3911
location: 670651..672309
location: region:670651-672309:1
so has part: feature:670651-672309:1:exon

XP_018733590.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:670651-672309:1:exon

AWJ20_3912
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3912
so part of: sequence
location: complement(<672479..>673576)
location: region:672479-673576:-1
so has part: feature:672479-673576:-1:exon
subclass of: SO_0000010

30035986
type: Gene
SIO_000068: ncbigene

position:672479:-1
position: 672479
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:673576:-1
position: 673576
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:672479-673576:-1:exon

AWJ20_3912
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3912
product: hypothetical protein
transcript id: XM_018880952.1
SIO_010081: AWJ20_3912
subclass of: SO_0000673
so part of: AWJ20_3912
location: complement(<672479..>673576)
location: region:672479-673576:-1
so has part: feature:672479-673576:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:672479-673576:-1:exon

AWJ20_3912
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3912
inference: similar to AA sequence:KEGG_Orthology:K13118
codon start: 1
product: hypothetical protein
translation: MNNGSERRLVKVERDGASSESHPASDSPAGELIEFKKWPQVESSEGGKMRLVVQQAESESITTNQTDGYRLKRPEKVIAEDEYSESLSNIISRDYFGGMPPDTSVTPSVSLDEYQAKYTSEDNDSFNSLLEAQIQEQREKFSWLWKSNKLDSGHVESTKRIMDKQQARFITDRAFTESERATENLGLTDRRPTRLRSNVAKDAKNALMFAPEVIGEKNNKRPAHEVKPKKISRENTRLDISHNAKSSHNLPAVHSAVDVITPPTVNSYGFVTENTYSYEPPAQSRRDNIHDRILKNEAEKKRQKKEESIFSFNSRSGRITKTPVSSRGASGSQVSGTPLSPAAARLMGRVKSTKMSGFDFTPKRK
SIO_010081: AWJ20_3912
subclass of: SO_0000673
so part of: AWJ20_3912
location: complement(672479..673576)
location: region:672479-673576:-1
so has part: feature:672479-673576:-1:exon

XP_018733591.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:672479-673576:-1:exon

AWJ20_3913
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ESA1
locus tag: AWJ20_3913
so part of: sequence
location: <673943..>675442
location: region:673943-675442:1
so has part: feature:673943-675442:1:exon
subclass of: SO_0000010

30035987
type: Gene
SIO_000068: ncbigene

position:673943:1
position: 673943
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:675442:1
position: 675442
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:673943-675442:1:exon

AWJ20_3913
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ESA1
locus tag: AWJ20_3913
product: NuA4 histone acetyltransferase complex catalytic subunit ESA1
transcript id: XM_018880953.1
SIO_010081: AWJ20_3913
subclass of: SO_0000673
so part of: AWJ20_3913
location: <673943..>675442
location: region:673943-675442:1
so has part: feature:673943-675442:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:673943-675442:1:exon

AWJ20_3913
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ESA1
locus tag: AWJ20_3913
inference: similar to AA sequence:KEGG_Orthology:K11304
note: Catalytic subunit of the histone acetyltransferase complex (NuA4); acetylates four conserved internal lysines of histone H4 N-terminal tail and can acetylate histone H2A; required for cell cycle progression and transcriptional silencing at the rDNA locus and regulation of autophagy; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IPI] [PMID 10487762]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IDA] [PMID 10911987]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IPI] [PMID 15485911]; GO_component: GO:0032777 - Piccolo NuA4 histone acetyltransferase complex [Evidence IDA] [PMID 12782659]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 10911987]; GO_component: GO:0005724 - nuclear telomeric heterochromatin [Evidence IDA] [PMID 10911987]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0010485 - H4 histone acetyltransferase activity [Evidence IDA] [PMID 12110674]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IMP] [PMID 10487762]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA] [PMID 17274630]; GO_function: GO:0034212 - peptide N-acetyltransferase activity [Evidence IMP] [PMID 23050233]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 12353039]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 16135807]; GO_process: GO:0006354 - DNA-templated transcription, elongation [Evidence IDA,IMP] [PMID 15949446]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0000183 - chromatin silencing at rDNA [Evidence IGI,IMP] [PMID 16436512]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 1008…
codon start: 1
product: NuA4 histone acetyltransferase complex catalytic subunit ESA1
translation: MTDGTPSRTASVSPGPGSGTNGEGTPAPTLPAPTITITSTQQVRVGFKCYVEKNGEKRLAEILSTHVRKGNLEFYVHYEDFNKRLDEWVSESRIDLSQPVTLPRPEKPKKSGSETPKAGPHNKVGKKSTKKTTKAAAAAAAAAARHSGVSTPKNKKIGAGKENEEPVSTPGNADVMDLDDIKVNTQQDPDDFNREEEIEKLRTSGSMTQNAHEVARVRNVSKIIMGENEIEPWYFSPYPIELTEEDQIYICEFSLSYFGSKKQFERFRSKSTLRHPPGNEIYRDENVSFFEIDGRRQRTWCRNLCLLSKLFLDHKTLYYDVDPFLFYCMTKRDEMGHHLVGYFSKEKESAEGYNVACILTLPQYQRHGYGRVLIDFSYNLSKKEGKVGSPEKPLSDLGLLSYRAYWADSIVELLIESGKNDTTIEEISSSTAMTTTDIIHTLQTLGMLKYYKGQHIICLTEAVVEKYDRQKARKRIRIDPSKLLWKPPVFTAAQLRFAW
SIO_010081: AWJ20_3913
subclass of: SO_0000673
so part of: AWJ20_3913
location: 673943..675442
location: region:673943-675442:1
so has part: feature:673943-675442:1:exon

XP_018733592.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:673943-675442:1:exon

AWJ20_3914
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RRD2
locus tag: AWJ20_3914
so part of: sequence
location: complement(<675743..>676891)
location: region:675743-676891:-1
so has part: feature:675743-676891:-1:exon
subclass of: SO_0000010

30035988
type: Gene
SIO_000068: ncbigene

position:675743:-1
position: 675743
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:676891:-1
position: 676891
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:675743-676891:-1:exon

AWJ20_3914
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RRD2
locus tag: AWJ20_3914
product: peptidylprolyl isomerase RRD2
transcript id: XM_018880954.1
SIO_010081: AWJ20_3914
subclass of: SO_0000673
so part of: AWJ20_3914
location: complement(<675743..>676891)
location: region:675743-676891:-1
so has part: feature:675743-676891:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:675743-676891:-1:exon

AWJ20_3914
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RRD2
locus tag: AWJ20_3914
inference: similar to AA sequence:KEGG_Orthology:K17605
note: Peptidyl-prolyl cis/trans-isomerase; also activates the phosphotyrosyl phosphatase activity of protein phosphatase 2A (PP2A); regulates G1 phase progression, the osmoresponse, microtubule dynamics; subunit of the Tap42p-Pph21p-Rrd2p complex; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000159 - protein phosphatase type 2A complex [Evidence IDA] [PMID 17550305]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA,IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IDA] [PMID 16380387]; GO_function: GO:0019211 - phosphatase activator activity [Evidence IEA]; GO_function: GO:0008601 - protein phosphatase type 2A regulator activity [Evidence IGI,ISS] [PMID 10660069]; GO_function: GO:0008601 - protein phosphatase type 2A regulator activity [Evidence IMP] [PMID 12952889]; GO_process: GO:0030472 - mitotic spindle organization in nucleus [Evidence IMP] [PMID 11262194]; GO_process: GO:0043085 - positive regulation of catalytic activity [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA,IEA]; GO_process: GO:0006970 - response to osmotic stress [Evidence IGI,IMP] [PMID 10660069]
codon start: 1
product: peptidylprolyl isomerase RRD2
translation: MTDEKLETTEVVGSEPTNGFRVPVKRILSEKDMDLFKNSITKTELLGFVKDLNHAVTGITNDAEISGVAPERAVSRIVEILEKVTELIDAHPAADQTSRFGKPEFRDLYDDIQRHSSQWIKEIVETDEKYCDGKDGNDSLVQELATYFNESWGNRQRIDYGSGHELNFLCFLYCLKSLQLIVESEYTAVVVKIFVLYLRIMRRIQNTYWLEPAGSHGVWGLDDYHFLPFLFGSSQLSTHKHLRPMSIHDPDIIEMYHKKYMYLGCIKFINDVKTASLRWHSPLIDDISGVKKWSKVNEGMLKMYNAEVLGKLPIMQHFMFGSLLPAPAGVSPESEHSASEDDHGHVHIPNTWADCCGIKVPSAIAASEMDISGGLRRAIPFD
SIO_010081: AWJ20_3914
subclass of: SO_0000673
so part of: AWJ20_3914
location: complement(675743..676891)
location: region:675743-676891:-1
so has part: feature:675743-676891:-1:exon

XP_018733593.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:675743-676891:-1:exon

AWJ20_3915
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ALG13
locus tag: AWJ20_3915
so part of: sequence
location: <677182..>677685
location: region:677182-677685:1
so has part: feature:677182-677685:1:exon
subclass of: SO_0000010

30035989
type: Gene
SIO_000068: ncbigene

position:677182:1
position: 677182
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:677685:1
position: 677685
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:677182-677685:1:exon

AWJ20_3915
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ALG13
locus tag: AWJ20_3915
product: N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase catalytic subunit ALG13
transcript id: XM_018880955.1
SIO_010081: AWJ20_3915
subclass of: SO_0000673
so part of: AWJ20_3915
location: <677182..>677685
location: region:677182-677685:1
so has part: feature:677182-677685:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:677182-677685:1:exon

AWJ20_3915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ALG13
locus tag: AWJ20_3915
inference: similar to AA sequence:KEGG_Orthology:K07432
note: Catalytic component of UDP-GlcNAc transferase; required for the second step of dolichyl-linked oligosaccharide synthesis; anchored to the ER membrane via interaction with Alg14p; similar to bacterial and human glycosyltransferases; protein abundance increases in response to DNA replication stress; GO_component: GO:0043541 - UDP-N-acetylglucosamine transferase complex [Evidence IPI] [PMID 16100110]; GO_component: GO:0043541 - UDP-N-acetylglucosamine transferase complex [Evidence IPI] [PMID 16100113]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14690591]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 16100110]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 16100113]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0042406 - extrinsic component of endoplasmic reticulum membrane [Evidence IDA] [PMID 16100110]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14690591]; GO_function: GO:0004577 - N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity [Evidence IEA]; GO_function: GO:0004577 - N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity [Evidence IMP,ISS] [PMID 15615718]; GO_function: GO:0004577 - N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity [Evidence IDA,IMP,ISS] [PMID 16100113]; GO_function: GO:0030246 - carbohydrate binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0006488 - dolichol-linked oligosaccharide biosynthetic process [Evidence IMP,ISS] [PMID 15615718]; GO_process: GO:0006488 - dolichol-linked oligosaccharide…
codon start: 1
product: N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase catalytic subunit ALG13
translation: MSVLVTSGATVPFEKLIRSTLSDGVLHQLAKQGYRQITVQYGSGKAIFDESVSSCHDPKLSIDGFDFTTDMAREIAKYDLVISHAGTGSILDALRANKKLIAVINTSLMDNHQAEIAHEFESQGYLVSTDTESISAALQRLDSTTLKQLPPADSLKLAAIINEEAGL
SIO_010081: AWJ20_3915
subclass of: SO_0000673
so part of: AWJ20_3915
location: 677182..677685
location: region:677182-677685:1
so has part: feature:677182-677685:1:exon

XP_018733594.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:677182-677685:1:exon

AWJ20_3916
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ISA2
locus tag: AWJ20_3916
so part of: sequence
location: complement(<677907..>678563)
location: region:677907-678563:-1
so has part: feature:677907-678563:-1:exon
subclass of: SO_0000010

30035990
type: Gene
SIO_000068: ncbigene

position:677907:-1
position: 677907
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:678563:-1
position: 678563
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:677907-678563:-1:exon

AWJ20_3916
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ISA2
locus tag: AWJ20_3916
product: Isa2p
transcript id: XM_018880956.1
SIO_010081: AWJ20_3916
subclass of: SO_0000673
so part of: AWJ20_3916
location: complement(<677907..>678563)
location: region:677907-678563:-1
so has part: feature:677907-678563:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:677907-678563:-1:exon

AWJ20_3916
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ISA2
locus tag: AWJ20_3916
note: Protein required for maturation of mitochondrial [4Fe-4S] proteins; functions in a complex with Isa1p and possibly Iba57p; localizes to the mitochondrial intermembrane space, overexpression of ISA2 suppresses grx5 mutations; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 10805735]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005506 - iron ion binding [Evidence IDA] [PMID 21987576]; GO_process: GO:0009102 - biotin biosynthetic process [Evidence IGI,IMP] [PMID 17259550]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IGI,IMP] [PMID 10805735]
codon start: 1
product: Isa2p
translation: MASLYRPLVQTHSGLLAGALRLTAARATPISKRSVHSLIGSGLQRTQPLLTYNASAVASRSVRRIVSSPTLGPKSATKITNPIKSENGQILRVDVSQKAAEKLNLLKSQDNNPDLALRISVESGGCHGFQYIYSLKTTKDIDSSNDSVFERDGAKVIIDATSLEIIQQSTIDYTTELIGSQFKVINSPFATSSCGCGSSFAFDPAAAAAAAAAATSSK
SIO_010081: AWJ20_3916
subclass of: SO_0000673
so part of: AWJ20_3916
location: complement(677907..678563)
location: region:677907-678563:-1
so has part: feature:677907-678563:-1:exon

XP_018733595.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:677907-678563:-1:exon

AWJ20_3917
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3917
so part of: sequence
location: <679192..>680208
location: region:679192-680208:1
so has part: feature:679192-680208:1:exon
subclass of: SO_0000010

30035991
type: Gene
SIO_000068: ncbigene

position:679192:1
position: 679192
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:680208:1
position: 680208
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:679192-680208:1:exon

AWJ20_3917
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3917
product: hypothetical protein
transcript id: XM_018880957.1
SIO_010081: AWJ20_3917
subclass of: SO_0000673
so part of: AWJ20_3917
location: <679192..>680208
location: region:679192-680208:1
so has part: feature:679192-680208:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:679192-680208:1:exon

AWJ20_3917
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3917
codon start: 1
product: hypothetical protein
translation: MGVIILDGTQLEEPVSAYHIPGDKGGPLFILIPGNPGVCQYYSEYLDELKGLLPSYEFLCASHRGMDALLNPKGSVGKTTPYKLTDQVEHLCNVLEWATARATSSDPRDVIIMGHSMGAWLLQRVLVRFANSPKIRFKMAGLLTPTIRDLAGSPKGVKLSWILDTVTQYPGYVMARTVQALYKTLPNFAFGYAIKLGLGGWSSTPSHAIVSTIAMLSRPSILVQVGQLAADEISHIKSDLPEFWDASIATDRGFAIWAYFAQNDPWVSDTTRDEIISEHSHLPSVHFDIAKGDPEDAIAHSFCLRQSSRFARITAYRISITPGLEPTKPQPPTISSQL
SIO_010081: AWJ20_3917
subclass of: SO_0000673
so part of: AWJ20_3917
location: 679192..680208
location: region:679192-680208:1
so has part: feature:679192-680208:1:exon

XP_018733596.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:679192-680208:1:exon

AWJ20_3918
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PHO8
locus tag: AWJ20_3918
so part of: sequence
location: complement(<682735..>684348)
location: region:682735-684348:-1
so has part: feature:682735-684348:-1:exon
subclass of: SO_0000010

30035992
type: Gene
SIO_000068: ncbigene

position:682735:-1
position: 682735
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:684348:-1
position: 684348
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:682735-684348:-1:exon

AWJ20_3918
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PHO8
locus tag: AWJ20_3918
product: alkaline phosphatase PHO8
transcript id: XM_018880958.1
SIO_010081: AWJ20_3918
subclass of: SO_0000673
so part of: AWJ20_3918
location: complement(<682735..>684348)
location: region:682735-684348:-1
so has part: feature:682735-684348:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:682735-684348:-1:exon

AWJ20_3918
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PHO8
locus tag: AWJ20_3918
inference: similar to AA sequence:KEGG_Orthology:K01077
codon start: 1
product: alkaline phosphatase PHO8
translation: MADETLLPAWRRGGRSQEHNKTMVFLGIWATLATFLALYYSPGHFSDLFKSHQSPKRNVIFFVSDGMGPASLSLTRSFRQYRDNLPIDDILHLDDHFIGHSRTRSSDSLVTDSAAGATAFACGFKTYNGAIGVFPDTDPCGTVLEGAKLRGYHTGMVVTTRITDATPASFSAHVLHREEEDLIAEHQLGMYPLGRMVDLMIGGGRCHFLPGSVDGGCRHDSRNLVEEAVEDGWQYVENREQYDLLKGGNNISLPLLALLAPGDIPYDLDRDDSVYPSLEDTTRTAIRALELATKHSDKGFFLLVEGSRIDHAGHQNDPAAQVREVLAFDRAFQAAIEFSKKSNVETIVVSTSDHETGGLATARQLTPSYPDYLWYPEALDNATHSAEYLGHALRHYNGKDVYDFIKTDILKEGLGIPEPTEEQIKLLADNKKRSEDHIANIISLRSQTGWSTHGHSAVDVNVYGFSGHKRANRRILKTLGGSNENTDIGKFLADYLDVDVSKVTDLLQQDDITTDDLDDPHGLDSYHAHIMAVTNGL
SIO_010081: AWJ20_3918
subclass of: SO_0000673
so part of: AWJ20_3918
location: complement(682735..684348)
location: region:682735-684348:-1
so has part: feature:682735-684348:-1:exon

XP_018733597.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:682735-684348:-1:exon

AWJ20_3919
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ARO8
locus tag: AWJ20_3919
so part of: sequence
location: complement(<685842..>687503)
location: region:685842-687503:-1
so has part: feature:685842-687503:-1:exon
subclass of: SO_0000010

30035993
type: Gene
SIO_000068: ncbigene

position:685842:-1
position: 685842
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:687503:-1
position: 687503
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:685842-687503:-1:exon

AWJ20_3919
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ARO8
locus tag: AWJ20_3919
product: bifunctional 2-aminoadipate transaminase/aromatic-amino-acid:2-oxoglutarate transaminase
transcript id: XM_018880959.1
SIO_010081: AWJ20_3919
subclass of: SO_0000673
so part of: AWJ20_3919
location: complement(<685842..>687503)
location: region:685842-687503:-1
so has part: feature:685842-687503:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:685842-687503:-1:exon

AWJ20_3919
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ARO8
locus tag: AWJ20_3919
inference: similar to AA sequence:KEGG_Orthology:K00838
note: Aromatic aminotransferase I; expression is regulated by general control of amino acid biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0047536 - 2-aminoadipate transaminase activity [Evidence IEA]; GO_function: GO:0047536 - 2-aminoadipate transaminase activity [Evidence IDA] [PMID 19342587]; GO_function: GO:0080130 - L-phenylalanine:2-oxoglutarate aminotransferase activity [Evidence IEA]; GO_function: GO:0008793 - aromatic-amino-acid:2-oxoglutarate aminotransferase activity [Evidence IEA]; GO_function: GO:0008793 - aromatic-amino-acid:2-oxoglutarate aminotransferase activity [Evidence IDA] [PMID 9491082]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]; GO_process: GO:0009094 - L-phenylalanine biosynthetic process [Evidence IEA]; GO_process: GO:0009072 - aromatic amino acid family metabolic process [Evidence IGI,IMP] [PMID 9491083]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IEA]; GO_process: GO:0006571 - tyrosine biosynthetic process [Evidence IEA]
codon start: 1
product: bifunctional 2-aminoadipate transaminase/aromatic-amino-acid:2-oxoglutarate transaminase
translation: MVTNNEIGLPHYSYFPYDTLEAAVAQPHRFSGSDKGRAQSSHIVVPKVDSSGVNASPLDIATVLQYGTAQGIPVLYEWLKEFTTKNLHPNIPYDGGADIILSCGNTDGMHKTLATLANDWSPARNDVSEREGLLVEKFCYMSAVDSAKFKGLNIVPVDIDYQGLLADSLEFVLANWDYSIGKRPHLLYTVSTGQNPTGGVVSVERRKEIYKVCSKYDVVIIEDEPYWFLQYPAADEEDPNPPSTDPGSTDGHAGTKKSSGYEFLDSLVQSYLEIDTDGRVVRLDTFSKNVAPGCRLGWITAQPAVIERITRMTEGSTQQPSGFVQSMIAKLVGAGAPNSSAVSETGPGSFVSTLARSKREPVPEAASWSFDGWVQWLSGLRDQYQRRMVVMCQALDDAKISVDEMSDEQGWTSVSNLENVYYDFDWPRAGMFVWLKVHLDKHPLASNSYSNEELSTALWVWMTRAPNLVLVSPGRMFSPAESLIEDASLYFRLCFAAIAEDELKASSQRIASAIHSFWSVDEDTVEELIDSTRDIESNDLNFDPTSFKSVFGC
SIO_010081: AWJ20_3919
subclass of: SO_0000673
so part of: AWJ20_3919
location: complement(685842..687503)
location: region:685842-687503:-1
so has part: feature:685842-687503:-1:exon

XP_018733598.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:685842-687503:-1:exon

AWJ20_3920
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3920
so part of: sequence
location: complement(<687566..>687775)
location: region:687566-687775:-1
so has part: feature:687566-687775:-1:exon
subclass of: SO_0000010

30035995
type: Gene
SIO_000068: ncbigene

position:687566:-1
position: 687566
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:687775:-1
position: 687775
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:687566-687775:-1:exon

AWJ20_3920
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3920
product: hypothetical protein
transcript id: XM_018880961.1
SIO_010081: AWJ20_3920
subclass of: SO_0000673
so part of: AWJ20_3920
location: complement(<687566..>687775)
location: region:687566-687775:-1
so has part: feature:687566-687775:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:687566-687775:-1:exon

AWJ20_3920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3920
codon start: 1
product: hypothetical protein
translation: MAPPRDLSHYYSENAKNRQGSEFKKFYKYFAIKGIGNLAGGKLCESPVSTPKARALQEIAWTPDRTAGA
SIO_010081: AWJ20_3920
subclass of: SO_0000673
so part of: AWJ20_3920
location: complement(687566..687775)
location: region:687566-687775:-1
so has part: feature:687566-687775:-1:exon

XP_018733599.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:687566-687775:-1:exon

AWJ20_3921
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ARL3
locus tag: AWJ20_3921
so part of: sequence
location: complement(<688549..>689145)
location: region:688549-689145:-1
so has part: feature:688549-689145:-1:exon
subclass of: SO_0000010

30035996
type: Gene
SIO_000068: ncbigene

position:688549:-1
position: 688549
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:689145:-1
position: 689145
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:688549-689145:-1:exon

AWJ20_3921
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ARL3
locus tag: AWJ20_3921
product: Arf family GTPase ARL3
transcript id: XM_018880962.1
SIO_010081: AWJ20_3921
subclass of: SO_0000673
so part of: AWJ20_3921
location: complement(<688549..>689145)
location: region:688549-689145:-1
so has part: feature:688549-689145:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:688549-689145:-1:exon

AWJ20_3921
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ARL3
locus tag: AWJ20_3921
inference: similar to AA sequence:KEGG_Orthology:K07952
note: ARF-like small GTPase of the RAS superfamily; required for recruitment of Arl1p, a GTPase that regulates membrane traffic, to the Golgi apparatus; NatC-catalyzed N-terminal acetylation regulates Golgi membrane association mediated by interaction with membrane receptor, Sys1p; similar to ADP-ribosylation factor and orthologous to mammalian ARFRP1; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 15077113]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 15077114]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0042175 - nuclear outer membrane-endoplasmic reticulum membrane network [Evidence IDA] [PMID 9920936]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA,ISS] [PMID 9920936]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0043001 - Golgi to plasma membrane protein transport [Evidence IMP] [PMID 16926193]; GO_process: GO:0006886 - intracellular protein transport [Evidence IMP] [PMID 9920936]; GO_process: GO:0033365 - protein localization to organelle [Evidence IMP] [PMID 12620189]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Arf family GTPase ARL3
translation: MYHLARSLYANFTRKEEYAVLILGLDNAGKTTLLERLKTEYSNTKGLAPDKIAPTVGQNVAHITKNGVMLKIWDLGGQEALRTLWESYYTEAHAVVFVVDSTDRTRIEQCRDALDKIVSSESIEGTPILMLANKQDQEDRLEVEDIKEIFNKIAEKMSARDSRVLPISALDGTGVEDATEWLVSRLVRNKQQRPPKLR
SIO_010081: AWJ20_3921
subclass of: SO_0000673
so part of: AWJ20_3921
location: complement(688549..689145)
location: region:688549-689145:-1
so has part: feature:688549-689145:-1:exon

XP_018733600.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:688549-689145:-1:exon

AWJ20_3922
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ADE1
locus tag: AWJ20_3922
so part of: sequence
location: <690026..>690946
location: region:690026-690946:1
so has part: feature:690026-690946:1:exon
subclass of: SO_0000010

30035997
type: Gene
SIO_000068: ncbigene

position:690026:1
position: 690026
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:690946:1
position: 690946
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:690026-690946:1:exon

AWJ20_3922
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ADE1
locus tag: AWJ20_3922
product: phosphoribosylaminoimidazolesuccinocarboxamide synthase
transcript id: XM_018880963.1
SIO_010081: AWJ20_3922
subclass of: SO_0000673
so part of: AWJ20_3922
location: <690026..>690946
location: region:690026-690946:1
so has part: feature:690026-690946:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:690026-690946:1:exon

AWJ20_3922
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ADE1
locus tag: AWJ20_3922
inference: similar to AA sequence:KEGG_Orthology:K01923
note: N-succinyl-5-aminoimidazole-4-carboxamide ribotide synthetase; required for 'de novo' purine nucleotide biosynthesis; red pigment accumulates in mutant cells deprived of adenine; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004639 - phosphoribosylaminoimidazolesuccinocarboxamide synthase activity [Evidence IEA,IEA]; GO_function: GO:0004639 - phosphoribosylaminoimidazolesuccinocarboxamide synthase activity [Evidence IDA] [PMID 1756975]; GO_function: GO:0004639 - phosphoribosylaminoimidazolesuccinocarboxamide synthase activity [Evidence IMP] [PMID 5767024]; GO_function: GO:0004639 - phosphoribosylaminoimidazolesuccinocarboxamide synthase activity [Evidence IMP] [PMID 5767025]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IDA] [PMID 1756975]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IMP] [PMID 5767024]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IMP] [PMID 5767025]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IDA] [PMID 1756975]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IMP] [PMID 5767024]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IMP] [PMID 5767025]
codon start: 1
product: phosphoribosylaminoimidazolesuccinocarboxamide synthase
translation: MSVVTTDLQGTLPLIARGKVRDLYQLSDDKLLFVATDRISAFDVILNNGIPSKGKLLTGLSEFWFELLADVTKNHLVPGVNSHNLAKALPQSVSSNDELISQLIGRSMVVNKYKVLPLEVIVRGYITGSAWAEYKKSGTVHGIPQKAGLQESEAFETPIYTPSTKAEQGEHDENIHPDEAAKIVGPELAAKLEKLALKLYTTARDYALSKGIIIADTKFEFGTDENGDIVLLDEVLTPDSSRFWRKDTYALGKSQDSYDKQFVRDWLISNNLKAVDNVTIPDEIVEKTKAKYVEAYETLTGNKWVE
SIO_010081: AWJ20_3922
subclass of: SO_0000673
so part of: AWJ20_3922
location: 690026..690946
location: region:690026-690946:1
so has part: feature:690026-690946:1:exon

XP_018733601.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:690026-690946:1:exon

AWJ20_3923
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PTC6
locus tag: AWJ20_3923
so part of: sequence
location: <691740..>693089
location: region:691740-693089:1
so has part: feature:691740-693089:1:exon
subclass of: SO_0000010

30035998
type: Gene
SIO_000068: ncbigene

position:691740:1
position: 691740
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:693089:1
position: 693089
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:691740-693089:1:exon

AWJ20_3923
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PTC6
locus tag: AWJ20_3923
product: type 2C protein phosphatase PTC6
transcript id: XM_018880964.1
SIO_010081: AWJ20_3923
subclass of: SO_0000673
so part of: AWJ20_3923
location: <691740..>693089
location: region:691740-693089:1
so has part: feature:691740-693089:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:691740-693089:1:exon

AWJ20_3923
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PTC6
locus tag: AWJ20_3923
inference: similar to AA sequence:KEGG_Orthology:K19708
note: Mitochondrial type 2C protein phosphatase (PP2C); has similarity to mammalian PP1Ks; involved in mitophagy; null mutant is sensitive to rapamycin and has decreased phosphorylation of the Pda1 subunit of pyruvate dehydrogenase; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 17166847]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 18180296]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_function: GO:0004741 - [pyruvate dehydrogenase (lipoamide)] phosphatase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA] [PMID 17002782]; GO_process: GO:0016236 - macroautophagy [Evidence IGI] [PMID 17166847]; GO_process: GO:0000422 - mitochondrion degradation [Evidence IMP] [PMID 17166847]; GO_process: GO:0043085 - positive regulation of catalytic activity [Evidence IMP] [PMID 18180296]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IMP] [PMID 18180296]
codon start: 1
product: type 2C protein phosphatase PTC6
translation: MLRRPRSYDPASIHPVPTNVPKLARSVSAYYTVESDNHSKARINLLKNPSYLGHYTSRVNRTYNEDRYYAGVLKLPVGSSLTSKYVRQKFTHHDRQVFNFAVFDGHGGSECSQFLQDHLAEYVENCDLSSGTALRDLYRKNVGGYWRAWGPELDRYVSRLTAVDDFQLRLPLSFLKADYEFSEKFERAGSTATSVYLYSDEESISANGDGTNLIGKTAAANDSEDAVDYSRTPKAFWDQDQVTTLVVAHVGDTRCILCDHHGNVHQLTTNHHPSTSVENTRLKRYATSFFTDSFGEERFGSFANTRAFGDFAAKAKGITAEPEIVECRIGDKRKIKSLSSTYPRHIKTFTGDEAFLVLMSDGVTEMISDQEVVDLVINTANKAGSGRGTPQDAAKEIVHYAAAVGGDDNATCMVIRLSGWGKWDTWYDRTAPRREEKLSSYSVRAPRRT
SIO_010081: AWJ20_3923
subclass of: SO_0000673
so part of: AWJ20_3923
location: 691740..693089
location: region:691740-693089:1
so has part: feature:691740-693089:1:exon

XP_018733602.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:691740-693089:1:exon

AWJ20_3924
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: POL90
locus tag: AWJ20_3924
so part of: sequence
location: complement(<702558..>705455)
location: region:702558-705455:-1
so has part: feature:702558-705455:-1:exon
subclass of: SO_0000010

30035999
type: Gene
SIO_000068: ncbigene

position:702558:-1
position: 702558
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:705455:-1
position: 705455
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:702558-705455:-1:exon

AWJ20_3924
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: POL90
locus tag: AWJ20_3924
product: polyprotein of L1-like non-LTR retrotransposon Zorro 1
transcript id: XM_018880965.1
SIO_010081: AWJ20_3924
subclass of: SO_0000673
so part of: AWJ20_3924
location: complement(<702558..>705455)
location: region:702558-705455:-1
so has part: feature:702558-705455:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:702558-705455:-1:exon

AWJ20_3924
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: POL90
locus tag: AWJ20_3924
note: polyprotein of non-LTR retrotransposon Zorro 1 and repeat region-related DNA
codon start: 1
product: polyprotein of L1-like non-LTR retrotransposon Zorro 1
translation: MSEDIHPVEYYKTLLPQIPELIIIAGDFNLHHPMWQSTEQVTREANSWADWVNDNGLLLATVPNVPTHIFGNTIDLTFATPNITITPEKSEDVGSDHYLQKWRIDTNPLDIELLQTYGGRYNYKRADWEKFEKVLDSRAALITIPKKLRGYSNRKSTHKVADRYATQLIGLLCDCLDEAVPKLKIVPRSKRWWTPELRQAKRDAVRARRRARSQPTEENRRLRQQANEEYASKILEAKTNTWNSYLASCRGTDIYDALKMIKPREPVPIMPALRLETGELAQTFEEQEEELYRGLFPQVKPSTRRLLKVVKTGQWKSLRMQEIEDAIRDQAPNKAPGPDGVKTVAIKRAWAVIRFRKLLKGLLQYCVRVGYHPKCFREGITVVIPKRKRDPALARSYRPITLLSTLGKVLEKIMQRRLTALTSGMLPVDQYGGRHGYSAVEAAHKLVHHAEKRMKRDQVTSVLAIDIKGAFDHVHRDTLLNTMGGMGLPTAVQNWVYQFMRGRRTSLVIDGKRTKERRIATGIPQGSPISPLLFLIYTSPLYPLIKSMGGKVIGFIDDITIYVSSTRYAENTAKLSNILARCHEWATSAHAFIDYGEKLGFMHIAKRVTPKGCRRLILPTGERIQATSSLKLLGVTIDRQLKFEEHAKSVINKGQSALNVIRRLGGVTRGVTGATMRCLYKSCVRSILEYASPIWYNRIRKGLKDAIQRIQNAALRSILGAYKPTAIVSLHRDAEIPPVEHRMLETEQYYLVRLHRDLHRYNPHRIRARKLYFGTMLGDRLDELYRTVEVTDIKKDRYRLWKPPWASRDSEAISKASSQKKSIRKEIRSQCYQKWEIEYTQSPKGAFYRSFTAPRLYSTKHANALRPFLYESPRGELSKLVQLRTGMGAMGSFFQRFRISNRRYDCRCGVEETVEHILRDCPLTEQHRPILRDASRELDLPSLLDTRKGLKAVASFLKANPSLLS
SIO_010081: AWJ20_3924
subclass of: SO_0000673
so part of: AWJ20_3924
location: complement(702558..705455)
location: region:702558-705455:-1
so has part: feature:702558-705455:-1:exon

XP_018733603.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:702558-705455:-1:exon

AWJ20_3925
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3925
so part of: sequence
location: complement(<717614..>718165)
location: region:717614-718165:-1
so has part: feature:717614-718165:-1:exon
subclass of: SO_0000010

30036000
type: Gene
SIO_000068: ncbigene

position:717614:-1
position: 717614
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:718165:-1
position: 718165
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:717614-718165:-1:exon

AWJ20_3925
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3925
product: hypothetical protein
transcript id: XM_018880966.1
SIO_010081: AWJ20_3925
subclass of: SO_0000673
so part of: AWJ20_3925
location: complement(<717614..>718165)
location: region:717614-718165:-1
so has part: feature:717614-718165:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:717614-718165:-1:exon

AWJ20_3925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3925
codon start: 1
product: hypothetical protein
translation: MTDNYHASNDLLPGKASDVNDQSNNRHEEQFQDTAAKATNGIKHEPQASNLEPLPPKKIRRKASTLPPPVARKDKGAALSLEEKKANHIASEQRRRQAIRQEFDKICELVPDLDLSKSRSEVVVLERTVSFLLHLMEENKALRELATSHSIELPADLAADTDNRRIIPANSASGYETSTHSRS
SIO_010081: AWJ20_3925
subclass of: SO_0000673
so part of: AWJ20_3925
location: complement(717614..718165)
location: region:717614-718165:-1
so has part: feature:717614-718165:-1:exon

XP_018733604.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:717614-718165:-1:exon

AWJ20_3926
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3926
so part of: sequence
location: <718557..>718674
location: region:718557-718674:1
so has part: feature:718557-718674:1:exon
subclass of: SO_0000663

30036001
type: Gene
SIO_000068: ncbigene

position:718557:1
position: 718557
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:718674:1
position: 718674
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:718557-718674:1:exon

AWJ20_3926
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_3926
product: tRNA-Pro
SIO_010081: AWJ20_3926
subclass of: SO_0000673
so part of: AWJ20_3926
location: <718557..>718674
location: region:718557-718674:1
so has part: feature:718557-718674:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:718557-718674:1:exon

AWJ20_3927
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3927
so part of: sequence
location: complement(<719248..>719544)
location: region:719248-719544:-1
so has part: feature:719248-719544:-1:exon
subclass of: SO_0000010

30036002
type: Gene
SIO_000068: ncbigene

position:719248:-1
position: 719248
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:719544:-1
position: 719544
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:719248-719544:-1:exon

AWJ20_3927
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3927
product: hypothetical protein
transcript id: XM_018880967.1
SIO_010081: AWJ20_3927
subclass of: SO_0000673
so part of: AWJ20_3927
location: complement(<719248..>719544)
location: region:719248-719544:-1
so has part: feature:719248-719544:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:719248-719544:-1:exon

AWJ20_3927
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3927
codon start: 1
product: hypothetical protein
translation: MSSAASKRLIKELSAFSHDPNPALDALQLQSEDDLFTWLAVLRGPADSPYEGQYENDLNALHCVFAFYLLTQRRWTLAYTDKGSTKLSSSTADDAISY
SIO_010081: AWJ20_3927
subclass of: SO_0000673
so part of: AWJ20_3927
location: complement(719248..719544)
location: region:719248-719544:-1
so has part: feature:719248-719544:-1:exon

XP_018733605.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:719248-719544:-1:exon

AWJ20_3928
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: AOH2
locus tag: AWJ20_3928
so part of: sequence
location: <720516..>724226
location: region:720516-724226:1
so has part: feature:720516-724226:1:exon
subclass of: SO_0000010

30036003
type: Gene
SIO_000068: ncbigene

position:720516:1
position: 720516
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:724226:1
position: 724226
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:720516-724226:1:exon

AWJ20_3928
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: AOH2
locus tag: AWJ20_3928
product: xanthine dehydrogenase/oxidase
transcript id: XM_018880968.1
SIO_010081: AWJ20_3928
subclass of: SO_0000673
so part of: AWJ20_3928
location: <720516..>724226
location: region:720516-724226:1
so has part: feature:720516-724226:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:720516-724226:1:exon

AWJ20_3928
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: AOH2
locus tag: AWJ20_3928
inference: similar to AA sequence:KEGG_Orthology:K00106
codon start: 1
product: xanthine dehydrogenase/oxidase
translation: MSLYALLRNCYNRHPTQQEISEAFDGNLCRCTGYKPILDAANSFVEGGGIVSKENGNAETNGTSTGSGGCCRMSNDQACACMRNQKSPNGFPLKEHNFHEQARGQSGSPVELIFPPGLKKFEPVPLFYGNERKVWFRPLTKRQLLEIKDRYPKAKLVGGATEIQIEIKMKQMDYNVSVFANDIDELKQFHYDEERKGVEFGANIDLSTLEHRLNEMTSLIGTEKSQIYQEIVKQLKYFAGRQIRNVATPAGNIATASPISDLNPVLVAADAVLTVESLSDGIQEIPISKFFIGYRKTLLPDGGIISKIFVPESLPQREVVRAFKQAKRKDDDIAIVTACLRLVVDKDFKITKARLAYGGVAPMTVRALKTEERLLGMEVSDSTSDAIISLSVNSLNNDDFKNITFGVPGGMAIFRRTLVTSFFYKFYQTVLQSFGFIRTLDGDAVEEVTRNFPIGKRDLDNAFEKKVLGKSNPHMSALKQVTGEATYVDDIPPFHKELFGVQVMSTRAHARIVSVDYSPIFEIDGVVGYANVDDIVSKQANMWGHFEDGKEEFFADGNVRYIGQCIGLVVAKDRETAARGARAVVVEYEDIDPKVITIEDAIKYNSFFNLERKIVKGDVESAFQTAAHIVEGTTRIGAQEHFYLETHGCIAVPEEDNEMKIYTSGQAPNATQVSAAQVLGIPANRIVARVKRLGGGFGGKESRCCQISSIAAVAARKFKKPVRIILTRSEDMLTMGQRHPFLIRWKVGLDKNFRFIGLKSKLYANAGWSLDLTAGVVERALFHMDNCYDFQNCHFEGFACKTNTASNTAFRGFGGPQGMFGAESLIYEVAETLGIEPDTLRELNYFRPGSSTAYQQPMNEDFTVPLLAKQVKEQANFQQLRAEVDAFNKEHKWIKRGLAHVPTAFGVSFGALFLNQAGALIHIYEDGSVLLAHGGTEMGQGLFTKMAMVAAEELDVPLESVFTSESATNTVANASPTAASASSDLNGMAVKDACDQLNKRLKPYREKFGPEATMKELAHAAYFDRVNLSANGFYKTPDIGYVWGDPNPKPAFFYHTQGAAVSMVEVNTLTGDWSCLRTDIKMDVGRPLNQAIDYGQIEGAYIQGQGLFTMEESLWLQSGALFTRGPGAYKIPGFRDIPQIFNVGILQDRPFKHLKTINRSKGIGEPPLFLGSTVFFAIRDALLAARKQNGKTEPLVGVQSPLTSERIRNLCGDSLVDLSIQAVQPTMDQKEFFVVA
SIO_010081: AWJ20_3928
subclass of: SO_0000673
so part of: AWJ20_3928
location: 720516..724226
location: region:720516-724226:1
so has part: feature:720516-724226:1:exon

XP_018733606.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:720516-724226:1:exon

AWJ20_3929
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SAY1
locus tag: AWJ20_3929
so part of: sequence
location: complement(<725372..>726289)
location: region:725372-726289:-1
so has part: feature:725372-726289:-1:exon
subclass of: SO_0000010

30036004
type: Gene
SIO_000068: ncbigene

position:725372:-1
position: 725372
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:726289:-1
position: 726289
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:725372-726289:-1:exon

AWJ20_3929
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SAY1
locus tag: AWJ20_3929
product: Say1p
transcript id: XM_018880969.1
SIO_010081: AWJ20_3929
subclass of: SO_0000673
so part of: AWJ20_3929
location: complement(<725372..>726289)
location: region:725372-726289:-1
so has part: feature:725372-726289:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:725372-726289:-1:exon

AWJ20_3929
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SAY1
locus tag: AWJ20_3929
note: Sterol deacetylase; component of the sterol acetylation/deacetylation cycle along with Atf2p; active both in the endoplasmic reticulum (ER) and in lipid droplets; integral membrane protein with active site in the ER lumen; green fluorescent protein (GFP)-fusion protein localizes to the ER; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 24868093]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IDA] [PMID 18034159]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 18034159]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0034084 - steryl deacetylase activity [Evidence IDA,IMP] [PMID 18034159]; GO_process: GO:0009636 - response to toxic substance [Evidence IMP] [PMID 18034159]; GO_process: GO:0034210 - sterol deacetylation [Evidence IMP] [PMID 18034159]; GO_process: GO:0016125 - sterol metabolic process [Evidence IMP] [PMID 18034159]
codon start: 1
product: Say1p
translation: MPTSAAKVLGWTMKKPFKNYGKKYASDGFTAYWLVELDDRQPEDPVLIFCHGGGFVFPLSLPQVWLLTAIVRAFPSVRLNVLILDYSLSPEHRYPTQIEEIASLYRHLLDVEACENIVLAGESCGGNLILALLAHLKHGFPTASPTTSKCKDTAVKGAILISPWVNLAIEAVVHDADSSYVKNAHEDILNTERLCFWANEYCPDKLTRQTSPWVSPVLLIKENIGFWENVLPARTLITWGEEELMKDDVARFASMTNISNAFEVPNGVHVDVLFQSKSPVYDKIIAFLEGVFEAKSVDSSTSTIL
SIO_010081: AWJ20_3929
subclass of: SO_0000673
so part of: AWJ20_3929
location: complement(725372..726289)
location: region:725372-726289:-1
so has part: feature:725372-726289:-1:exon

XP_018733607.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:725372-726289:-1:exon

AWJ20_3930
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3930
so part of: sequence
location: <728241..>729293
location: region:728241-729293:1
so has part: feature:728241-729293:1:exon
subclass of: SO_0000010

30036006
type: Gene
SIO_000068: ncbigene

position:728241:1
position: 728241
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:729293:1
position: 729293
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:728241-729293:1:exon

AWJ20_3930
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3930
product: hypothetical protein
transcript id: XM_018880971.1
SIO_010081: AWJ20_3930
subclass of: SO_0000673
so part of: AWJ20_3930
location: <728241..>729293
location: region:728241-729293:1
so has part: feature:728241-729293:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:728241-729293:1:exon

AWJ20_3930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3930
inference: similar to AA sequence:KEGG_Orthology:K00459
codon start: 1
product: hypothetical protein
translation: MATNWLFTELKLRIPVIQAPMAGVSSSSMVVAASKAGILGSLGGGMMQPEVLRKEIEAIRNQTDRPFNINLFVIDNYEQGFDVRTKDIQWLKDYYKQEGVEFNLPKSFAPKFQDQFETLLELAPPVASFAFGILSAEQVDACHERGIRVIGTATSGEEAVAWEKVGADAICAQGTEAGGHRGNFINLDDPGLGLFALIPEIKRQVKIPVIAAGGIMSGQGIVASRLLGADVAQLGTYFLASTEAGIPSGYLKSLAGQKSGSNTSLTKGFSGRYARGIVNKFMNTSKEHSIYPYPIQNALTQPLRKATLAKGDAESYSLWSGQGLYQVKEGESISDLVDSLEREISQTKLP
SIO_010081: AWJ20_3930
subclass of: SO_0000673
so part of: AWJ20_3930
location: 728241..729293
location: region:728241-729293:1
so has part: feature:728241-729293:1:exon

XP_018733608.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:728241-729293:1:exon

AWJ20_3931
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: COQ6
locus tag: AWJ20_3931
so part of: sequence
location: <729621..>731246
location: region:729621-731246:1
so has part: feature:729621-731246:1:exon
subclass of: SO_0000010

30036007
type: Gene
SIO_000068: ncbigene

position:729621:1
position: 729621
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:731246:1
position: 731246
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:729621-731246:1:exon

AWJ20_3931
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: COQ6
locus tag: AWJ20_3931
product: putative N,N-dimethylaniline monooxygenase COQ6
transcript id: XM_018880972.1
SIO_010081: AWJ20_3931
subclass of: SO_0000673
so part of: AWJ20_3931
location: <729621..>731246
location: region:729621-731246:1
so has part: feature:729621-731246:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:729621-731246:1:exon

AWJ20_3931
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: COQ6
locus tag: AWJ20_3931
inference: similar to AA sequence:KEGG_Orthology:K06126
note: Putative flavin-dependent monooxygenase; involved in ubiquinone (Coenzyme Q) biosynthesis; localizes to the matrix face of the mitochondrial inner membrane in a large complex with other ubiquinone biosynthetic enzymes; human COX6 can rescue a yeast cox6 mutant and is implicated in steroid-resistant nephrotic syndrome (SRNS); GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 12721307]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004499 - N,N-dimethylaniline monooxygenase activity [Evidence ISA] [PMID 12721307]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0004497 - monooxygenase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IMP] [PMID 21944752]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IMP] [PMID 9266513]
codon start: 1
product: putative N,N-dimethylaniline monooxygenase COQ6
translation: MSGLIRLGWRPLSRARFIRKPSPAVGSHSKLLASRSQWGLIRHLSTVGPILQAEPSSIDNQSIDASKTDKAGAVNEQKVSYHDVVIIGGGPAGLTLFTALKNSPVTSNLDIVLVEGSSLERLRSWSLPENLYENRVSSLTPRSVEFLKSIGAWDHVHHERVQDYHEMKVWDGCSDSRIEFDPYILGENNEIAWMIENSNLQNSLLSRLAELDSSASVNNVVDSAKVKSISRQPSEQNNKQDGQVSLGAATWDSSSWPVVELENGRKLSARLLVGADGGNSPVRTFAGIQSRGWDYERHGLVASVKLEWEDFRSIAWQRFLVTGPIALLPLPNGFCSLVWSTTPENAQHLKSLTPAAFCAMVNAAFRLGPVDLKYLHTITDEATLIDEIEWRIQNTNIVDEDNNVPVPISEVLDKSRASFPLKMKHADTYVSERVALVGDAAHTTHPLAGQGLNMGQSDVANLVQAIETATKRGLDIGSLLALEPYWASSYWSNHIKLGVVDKLHKLYSSDFGPLVQLRSWGLDFFNESPFLKRLLMSNASK
SIO_010081: AWJ20_3931
subclass of: SO_0000673
so part of: AWJ20_3931
location: 729621..731246
location: region:729621-731246:1
so has part: feature:729621-731246:1:exon

XP_018733609.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:729621-731246:1:exon

AWJ20_3932
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3932
so part of: sequence
location: <731869..>733311
location: region:731869-733311:1
so has part: feature:731869-733311:1:exon
subclass of: SO_0000010

30036008
type: Gene
SIO_000068: ncbigene

position:731869:1
position: 731869
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:733311:1
position: 733311
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:731869-733311:1:exon

AWJ20_3932
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3932
product: hypothetical protein
transcript id: XM_018880973.1
SIO_010081: AWJ20_3932
subclass of: SO_0000673
so part of: AWJ20_3932
location: <731869..>733311
location: region:731869-733311:1
so has part: feature:731869-733311:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:731869-733311:1:exon

AWJ20_3932
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3932
inference: similar to AA sequence:KEGG_Orthology:K12735
codon start: 1
product: hypothetical protein
translation: MVVKNIASNSDEPSLLAGSQFIVTLGDGLDSLDSRAVVFGRVEEGYDTLDTISNAICDSDGRPLKDIRIKHTYILEDPFPDPNGLDELVRPNSPEPSEKQLSTVRIGDDNDESNEDEENAENKHKEQDARAQALTLEMVGDLPFAEVKPMENVLFVCKLNPVTNDEDLELIFSRFGPIISCEVIRDKDTGDSLQYAFIEFEDQEACERAYLKMDGVLIDDNRIHVDFSQSVSRLSDGWRNETNAKRKNVHGSKFISNASTSVKSRNVDQRDIKRQRLRDGNVNSTRYDGRESRRYGMDETHYERKVDSRYEDKKTHESYRQDERYEEDRLDKQYHRKHDKSDNKRDERRGNRRDDRRDDKRDDRRDDQRDDRRDDRRDDRREDRRDDRRDDRRDHRRDHRRDDGRDEKSDDRRSHRRDDTKYDRSDSTKDREDRSYRDRERYGHSRDSYRDRRDRDQGRHARRDEGRHNRHNSDRTQSRD
SIO_010081: AWJ20_3932
subclass of: SO_0000673
so part of: AWJ20_3932
location: 731869..733311
location: region:731869-733311:1
so has part: feature:731869-733311:1:exon

XP_018733610.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:731869-733311:1:exon

AWJ20_3933
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3933
so part of: sequence
location: complement(<733458..>734279)
location: region:733458-734279:-1
so has part: feature:733458-734279:-1:exon
subclass of: SO_0000010

30036009
type: Gene
SIO_000068: ncbigene

position:733458:-1
position: 733458
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:734279:-1
position: 734279
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:733458-734279:-1:exon

AWJ20_3933
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3933
product: hypothetical protein
transcript id: XM_018880974.1
SIO_010081: AWJ20_3933
subclass of: SO_0000673
so part of: AWJ20_3933
location: complement(<733458..>734279)
location: region:733458-734279:-1
so has part: feature:733458-734279:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:733458-734279:-1:exon

AWJ20_3933
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3933
codon start: 1
product: hypothetical protein
translation: MGSPSFIHKPFPISQITPSTIVLGSSGFKNTTASAEDTSVGTEGSIRTTSSDITEGSQDSLSDRNTDISSLSSTESASGTHADSKTNDFLATAVQTNIAINMASSATIRSNSQESDHNESASENNNDGNIRSTANSTTHSAANSSPASPLPSSPTIMNTILGPATQKTSSTITIPFSDTQIEASSVLVTSSDPPERCTSPRRDNVAIEKIGREKVQVLRKEAQLIQESLTDILERIIKVKEDYDRLSNENRFLQDYIGNLMSTSNILNKAGHA
SIO_010081: AWJ20_3933
subclass of: SO_0000673
so part of: AWJ20_3933
location: complement(733458..734279)
location: region:733458-734279:-1
so has part: feature:733458-734279:-1:exon

XP_018733611.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:733458-734279:-1:exon

AWJ20_3934
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TGL2
locus tag: AWJ20_3934
so part of: sequence
location: <736051..>737364
location: region:736051-737364:1
so has part: feature:736051-737364:1:exon
subclass of: SO_0000010

30036010
type: Gene
SIO_000068: ncbigene

position:736051:1
position: 736051
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:737364:1
position: 737364
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:736051-737364:1:exon

AWJ20_3934
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TGL2
locus tag: AWJ20_3934
product: Tgl2p
transcript id: XM_018880975.1
SIO_010081: AWJ20_3934
subclass of: SO_0000673
so part of: AWJ20_3934
location: <736051..>737364
location: region:736051-737364:1
so has part: feature:736051-737364:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:736051-737364:1:exon

AWJ20_3934
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TGL2
locus tag: AWJ20_3934
inference: similar to AA sequence:KEGG_Orthology:K01046
note: Triacylglycerol lipase that is localized to the mitochondria; has lipolytic activity towards triacylglycerols and diacylglycerols when expressed in E. coli; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19959834]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]; GO_function: GO:0004806 - triglyceride lipase activity [Evidence IEA]; GO_function: GO:0004806 - triglyceride lipase activity [Evidence IDA,IMP] [PMID 9544243]; GO_process: GO:0006505 - GPI anchor metabolic process [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0019433 - triglyceride catabolic process [Evidence IMP] [PMID 19959834]
codon start: 1
product: Tgl2p
translation: MMSSTDLLLAYSAASQQRYQKETDDSGNSRARLMVVLKGVGVNGGIAAVAGSAAKHLSFLCKVGGPYGLGLFNTTTPARFYSDNNGSGTGKGGNPNDQIDGLKNRKEIEGDPANVRDGNLRKEESSDSTVIGKPGSSKSPPKTLLLKHEFENLKAKYTPTKYPIILCHGLFGFDTLKSPVPIIVKDLSYWHGIKEALVDAGAKVLSASVPPVGPIETRAEYLAQVIERWVKEENLDNGNGESDEPLKLNLIGHSMGGLDARYMISVLKPPNIKVLSLTTIVTPHQGTSFADHIFKENPLYITKLLKAIACVGGVEEPSGIKQLTTEHMQNAFNPHVPDDKDVYYSSYGARIGSRWTTVLKYSADYIKSVEGDNDGLVSVESAKWGEYLGTIENCDHLDVVNLVGVTHWLKWATFQKSSFNAIALYLHIMDSLAKKGF
SIO_010081: AWJ20_3934
subclass of: SO_0000673
so part of: AWJ20_3934
location: 736051..737364
location: region:736051-737364:1
so has part: feature:736051-737364:1:exon

XP_018733612.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:736051-737364:1:exon

AWJ20_3935
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ALD5
locus tag: AWJ20_3935
so part of: sequence
location: complement(<737539..>738930)
location: region:737539-738930:-1
so has part: feature:737539-738930:-1:exon
subclass of: SO_0000010

30036011
type: Gene
SIO_000068: ncbigene

position:737539:-1
position: 737539
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:738930:-1
position: 738930
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:737539-738930:-1:exon

AWJ20_3935
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ALD5
locus tag: AWJ20_3935
product: aldehyde dehydrogenase (NAD(P)(+)) ALD5
transcript id: XM_018880976.1
SIO_010081: AWJ20_3935
subclass of: SO_0000673
so part of: AWJ20_3935
location: complement(<737539..>738930)
location: region:737539-738930:-1
so has part: feature:737539-738930:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:737539-738930:-1:exon

AWJ20_3935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ALD5
locus tag: AWJ20_3935
inference: similar to AA sequence:KEGG_Orthology:K00128
note: Mitochondrial aldehyde dehydrogenase; involved in regulation or biosynthesis of electron transport chain components and acetate formation; activated by K+; utilizes NADP+ as the preferred coenzyme; constitutively expressed; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004029 - aldehyde dehydrogenase (NAD) activity [Evidence IDA] [PMID 9473035]; GO_function: GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity [Evidence IEA]; GO_function: GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity [Evidence IDA] [PMID 9473035]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0019413 - acetate biosynthetic process [Evidence IMP] [PMID 15256563]; GO_process: GO:0006068 - ethanol catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]
codon start: 1
product: aldehyde dehydrogenase (NAD(P)(+)) ALD5
translation: MLRGILRSQSSQWTKGFRQTVRQYSSSKSSDIADKAVESAFKSSATWKNVPVEEKRDIFYNASKLLKERREELVKLTNQEVGIPSLFAGFFVDDAVDFMTTMGDLVTNSGYGQFLPPVKGRQPIVVREPIGPVFGIVPWNAPTILGLRAAACPLAAGCSVVVKTSEYTPLTQRLTLQTLTDAGVPEGVVNILEVPLEDSPAVVEQVISDFRIRKVNFTGSGRVGAIVAGLAGTHLKPILLELGGKAAAIVDETADFETAARNIVLGAWANSGQICMSTERIFVTKEAADGFNKAITKVSHEELNQDYLQCRQISPVNSKRIEQLAKDAVSKGATSIVNGIPKAKDGDVSKSILTNVSQDSELFDSETFAPLAFFNIVDSVDQAIDLVNSSKFGLNSSVWTADTAKGIEIARKINSGTVHINGNTVFDHGSVPHGGVKNSGFGRFNGQWGIDEFTVIKTITYPV
SIO_010081: AWJ20_3935
subclass of: SO_0000673
so part of: AWJ20_3935
location: complement(737539..738930)
location: region:737539-738930:-1
so has part: feature:737539-738930:-1:exon

XP_018733613.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:737539-738930:-1:exon

AWJ20_3936
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3936
so part of: sequence
location: <740233..>741807
location: region:740233-741807:1
so has part: feature:740233-741807:1:exon
subclass of: SO_0000010

30036012
type: Gene
SIO_000068: ncbigene

position:740233:1
position: 740233
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:741807:1
position: 741807
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:740233-741807:1:exon

AWJ20_3936
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3936
product: hypothetical protein
transcript id: XM_018880977.1
SIO_010081: AWJ20_3936
subclass of: SO_0000673
so part of: AWJ20_3936
location: <740233..>741807
location: region:740233-741807:1
so has part: feature:740233-741807:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:740233-741807:1:exon

AWJ20_3936
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3936
codon start: 1
product: hypothetical protein
translation: MTLKSETSLKSVNVKLEGIAKTVIQVTEEVNDRGKKRETKTRDEIEIHHVLYKTQTVFPPEDVRKSSTSNQFTLPPGSYTYAFRFKIPVNSDCRQNAASSASNSWGNGSNGWTPGGPGGSFAGGAFSSIANGRIGSSISNSINNVAGPGNKLLVTGRGIDIARAPSLQSHDGGVLPPSLSGIENSASIKYFVKVTVVRASMLKMNTRSHKPFIFLPLDPPRLYDSSKMAFVRRQITVGTSVTSPGGSKGRSTSSSGGGGFFSSLLSSQKVSSFMGVNTWPGETLSFTFEMRFPSVGTFVPLRPLPIELYALFPANPTTMTERKAIYISSFSVFLYARTFIRAHEHNKEIPLQLNVCDKKNLRLAVSLADAQPVTRNGQTVFELRLPSDLLNGVQFPSYVSPTFTTCNIARNYSIGVEMGFYCVQGIPVDHVGLLSDIIVRSGVSAPSENTSSALPPPPPSRPVQSDPPPEKLKYHTNAEDTQENGELPSYNEVVAATVGTSSSTQPEPRRKFEQAPDYYKISKE
SIO_010081: AWJ20_3936
subclass of: SO_0000673
so part of: AWJ20_3936
location: 740233..741807
location: region:740233-741807:1
so has part: feature:740233-741807:1:exon

XP_018733614.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:740233-741807:1:exon

AWJ20_3937
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3937
so part of: sequence
location: complement(<742105..>743130)
location: region:742105-743130:-1
so has part: feature:742105-743130:-1:exon
subclass of: SO_0000010

30036013
type: Gene
SIO_000068: ncbigene

position:742105:-1
position: 742105
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:743130:-1
position: 743130
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:742105-743130:-1:exon

AWJ20_3937
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3937
product: hypothetical protein
transcript id: XM_018880978.1
SIO_010081: AWJ20_3937
subclass of: SO_0000673
so part of: AWJ20_3937
location: complement(<742105..>743130)
location: region:742105-743130:-1
so has part: feature:742105-743130:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:742105-743130:-1:exon

AWJ20_3937
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3937
codon start: 1
product: hypothetical protein
translation: MGSGAEPQSPEAYNNNPTLAAGEGVYLDRDSSGDKGLCMHVPLKRISVRNNCKAGVRLAHFSKVHGLFQYSQRFNVTGSRSFSVDIFLPLIFAQYLLASGYWSHSHLNLKDNIRRNYKMTNDTASSYSDEYKVIRNHPYVIELLDSGNYEVNHAYDVPDDQKDHSLTAGTLIGKDLISHTPLALFLRSDLITERQESELIVFYHLGSRLCGHKGIIHGGLLATLIDETFCRCGFPLLPNKLGVTATLDIQYLAPTKAESIIVVRAKTTKVEGRKVWIEGAVSALPYPDAYESGHELTPAVKAKVLLVEPRWVEKLPKFSEGKTELATEEGTSEAQQQQPTA
SIO_010081: AWJ20_3937
subclass of: SO_0000673
so part of: AWJ20_3937
location: complement(742105..743130)
location: region:742105-743130:-1
so has part: feature:742105-743130:-1:exon

XP_018733615.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:742105-743130:-1:exon

AWJ20_3938
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ORC1
locus tag: AWJ20_3938
so part of: sequence
location: <746553..>748787
location: region:746553-748787:1
so has part: feature:746553-748787:1:exon
subclass of: SO_0000010

30036014
type: Gene
SIO_000068: ncbigene

position:746553:1
position: 746553
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:748787:1
position: 748787
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:746553-748787:1:exon

AWJ20_3938
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ORC1
locus tag: AWJ20_3938
product: origin recognition complex subunit 1
transcript id: XM_018880979.1
SIO_010081: AWJ20_3938
subclass of: SO_0000673
so part of: AWJ20_3938
location: <746553..>748787
location: region:746553-748787:1
so has part: feature:746553-748787:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:746553-748787:1:exon

AWJ20_3938
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ORC1
locus tag: AWJ20_3938
inference: similar to AA sequence:KEGG_Orthology:K02603
note: Largest subunit of the origin recognition complex; involved in directing DNA replication by binding to replication origins; also involved in transcriptional silencing; exhibits ATPase activity; ORC1 has a paralog, SIR3, that arose from the whole genome duplication; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IDA] [PMID 9554851]; GO_component: GO:0005664 - nuclear origin of replication recognition complex [Evidence IDA,IMP] [PMID 9372948]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 16824194]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 9335335]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11168584]; GO_component: GO:0000808 - origin recognition complex [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IDA] [PMID 17825064]; GO_function: GO:0005524 - ATP binding [Evidence IMP] [PMID 9038340]; GO_function: GO:0016887 - ATPase activity [Evidence IMP] [PMID 9038340]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 16824194]; GO_function: GO:0003682 - chromatin binding [Evidence IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 11168584]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IMP] [PMID 16716188]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IDA] [PMID 12897051]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IDA,IGI] [PMID 16581798]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA …
codon start: 1
product: origin recognition complex subunit 1
translation: MSDEDEWKYIYPSSENDAPDDESPRKRRTGLRNTSVLSPIGVRRLADEQEFYVGDCVLLDSGSDTPYVGIIESFFFSEKGFMETRTIWFRRFSEITRQSARKNAPENLEGELFATPDMGRDSLDILLEPAIVLSYSEYQNRIAATSDTPIEEKNTFFCRRTFNSDRGLFGKEDFDWSTVYAGRGSDMLQLLANLEDLTPSTRKKTATPRASPAKKQPPKKKIIELSSSDEEDELLSGSDSDEFFDTAEDKAGIRTSPSPTPSKRKRTSASEPKTPTKSRKKASISNTPKTPKSSTVSPVKKRSTATPRRKLNPLQPTAVHALPVRMSPTKQVPTSPHKFARDVLHVATVPDSLPCRESEFSQIFLALESAISSESGTCVYISGTPGTGKTATVREVIAQLQLRVEDEELPAFKFVEINGMKLTNPHTAYEILYENISNKKAAAATAMVLLEKQFKSSSDNNSMPVVVLMDELDQLVTKNQGVMYNFFNWPTFSHSKLIVVAVANTMDLPERMLSNKISSRLGLTRIQFPGYSHEQLREIISTRLANLPEGAGIVEKDAIEFASRKIAGVSGDARRALDICRRAVELAQPEEEEISDTLNDGEKGSLDEHKVTIDHIKKAIAESTSSPTHTFLRGLSMSAKILVCAMLSRVRRSGLIDNPLGDVLQETERIVKLSNDSEKLTAVLFNNNRVRIAGFQYALNELIEGGVLLQQMLRGERSANIRLSIGEEYVKSAFKNDLQVAGML
SIO_010081: AWJ20_3938
subclass of: SO_0000673
so part of: AWJ20_3938
location: 746553..748787
location: region:746553-748787:1
so has part: feature:746553-748787:1:exon

XP_018733616.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:746553-748787:1:exon

AWJ20_3939
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SEC14
locus tag: AWJ20_3939
so part of: sequence
location: complement(<748898..>749689)
location: region:748898-749689:-1
so has part: feature:748898-749689:-1:exon
subclass of: SO_0000010

30036015
type: Gene
SIO_000068: ncbigene

position:748898:-1
position: 748898
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:749689:-1
position: 749689
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:748898-749689:-1:exon

AWJ20_3939
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SEC14
locus tag: AWJ20_3939
product: phosphatidylinositol/phosphatidylcholine transfer protein SEC14
transcript id: XM_018880980.1
SIO_010081: AWJ20_3939
subclass of: SO_0000673
so part of: AWJ20_3939
location: complement(<748898..>749689)
location: region:748898-749689:-1
so has part: feature:748898-749689:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:748898-749689:-1:exon

AWJ20_3939
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SEC14
locus tag: AWJ20_3939
note: Phosphatidylinositol/phosphatidylcholine transfer protein; involved in regulating PtdIns, PtdCho, and ceramide metabolism, products of which regulate intracellular transport and UPR; has a role in localization of lipid raft proteins; functionally homologous to mammalian PITPs; SEC14 has a paralog, YKL091C, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 1997207]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 7816798]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 1997207]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12869188]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 2466847]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0008525 - phosphatidylcholine transporter activity [Evidence IDA,IMP] [PMID 10488334]; GO_function: GO:0008525 - phosphatidylcholine transporter activity [Evidence IDA] [PMID 10848624]; GO_function: GO:0008525 - phosphatidylcholine transporter activity [Evidence IDA] [PMID 2407740]; GO_function: GO:0008526 - phosphatidylinositol transporter activity [Evidence IDA,IMP] [PMID 10848624]; GO_function: GO:0008526 - phosphatidylinositol transporter activity [Evidence IDA,IMP] [PMID 2215682]; GO_function: GO:0008526 - phosphatidylinositol transporter activity [Evidence IDA] [PMID 2407740]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0043001 - Golgi to plasma membrane protein transport [Evidence IMP] [PMID 10848624]; GO_process: GO:0043001 - Golgi to plasma membrane protein transport [Evidence IMP] [PMID 19129178]; GO_process: GO:0043001 - Golgi to plasma membrane protein transport [Evidence IMP] [PMID 6754086]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IGI,IMP] [PMID 18753406]; GO_process: GO:0…
codon start: 1
product: phosphatidylinositol/phosphatidylcholine transfer protein SEC14
translation: MYIACEKWREEFGTNTILEDFVYEEKPQVAKYYPQYYHKTDKDGRPVYIEQLGAVKISEMYKITSQERMLKNLVWEYEAFVRYRLPATSRQRGYLVETSCTILDLKGCSLSTASSVYSYLREASAIGQNYYPERMGKFYLLNAPFGFATVFSMIKGFLDPVTVEKIHILGSKYQSELLSQIPAENLPAKFGGKSVSAGSVELADDGPWRDMQFVGPEGLAPKSSVSVLSSIAGTPSPSSAASSRPPSRAASISSKRSQKLQPQ
SIO_010081: AWJ20_3939
subclass of: SO_0000673
so part of: AWJ20_3939
location: complement(748898..749689)
location: region:748898-749689:-1
so has part: feature:748898-749689:-1:exon

XP_018733617.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:748898-749689:-1:exon

AWJ20_3940
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: NUP84
locus tag: AWJ20_3940
so part of: sequence
location: <751932..>753830
location: region:751932-753830:1
so has part: feature:751932-753830:1:exon
subclass of: SO_0000010

30036017
type: Gene
SIO_000068: ncbigene

position:751932:1
position: 751932
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:753830:1
position: 753830
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:751932-753830:1:exon

AWJ20_3940
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: NUP84
locus tag: AWJ20_3940
product: Nup84p
transcript id: XM_018880982.1
SIO_010081: AWJ20_3940
subclass of: SO_0000673
so part of: AWJ20_3940
location: <751932..>753830
location: region:751932-753830:1
so has part: feature:751932-753830:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:751932-753830:1:exon

AWJ20_3940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: NUP84
locus tag: AWJ20_3940
inference: similar to AA sequence:KEGG_Orthology:K14301
note: Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC); contributes to nucleocytoplasmic transport and NPC biogenesis; also plays roles in several processes that may require localization of genes or chromosomes at the nuclear periphery, including double-strand break repair, transcription and chromatin silencing; homologous to human NUP107; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0031080 - nuclear pore outer ring [Evidence IDA] [PMID 11823431]; GO_component: GO:0031080 - nuclear pore outer ring [Evidence IDA] [PMID 18046406]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IMP] [PMID 22331846]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IMP] [PMID 12482937]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IDA] [PMID 21818277]; GO_process: GO:0006302 - double-strand break repair [Evidence IGI] [PMID 15725626]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 16418532]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 17538013]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 8565072]; GO_process: GO:0031990 - mRNA export from nucleus in response to heat stress [Evidence IMP] [PMID 18258809]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0035392 - maintenance of chromatin silencing at telomere [Evidence IMP] [PMID 16418532]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 8565072]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence …
codon start: 1
product: Nup84p
translation: MGASALSTGLGANKGLFNNTGSRFRTDTSGISKDPNLVTELDADAPLRSKKTLCPEDEEADRIAFKYVFELLRARKYEEALDICEKTGNWSLKVTISGHNDYIDPEIDGGLLSNIDDSEPRGAEAKVLWQYMCRQLARQAQNIDAYERGIYGFLGGDLDSVLKLCDTWETQFIAYMSHLMVCDADAALVSDKRLAPGLAISPSAIKANHSSSSAQKVLDILSNSSNPVVAVQSEHMIRTLMGAVINGTVGYLVEEASGILRQVMTGAQGSSPLTDNPYILRIFVHLILFLQSIDVPVGDAENVSVILCGYIELLRLQNMGTIAPLYIAYLPDDIAIDTYSVLLATITEQDIRKEHLQLGHKYGLDMANTIRAAVERVFSENEHLYDDQEFTDISTTVSESDVKLYQSIEWFIDSNMWPDAVHSMAALYRRFLSAGRVGAAREFGNRISVSYVVKRYDGHMIGSGHSLTKVSTDSQNELAGIERIQVLEFERLLNCINDIAKWDLHVQVPDQSSKPWRMDALAIVDSISSQVYDLCLNWFRQEEFELDQRIQRLRSIYLPYIILELGRVLISAQKVHSGFLKQAAELAVVIADEKQGLYRLFLASNQLESLLTIVATAVTDGMARGESGIFDA
SIO_010081: AWJ20_3940
subclass of: SO_0000673
so part of: AWJ20_3940
location: 751932..753830
location: region:751932-753830:1
so has part: feature:751932-753830:1:exon

XP_018733618.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:751932-753830:1:exon

AWJ20_3941
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3941
so part of: sequence
location: complement(<754109..>754190)
location: region:754109-754190:-1
so has part: feature:754109-754190:-1:exon
subclass of: SO_0000663

30036018
type: Gene
SIO_000068: ncbigene

position:754109:-1
position: 754109
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:754190:-1
position: 754190
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:754109-754190:-1:exon

AWJ20_3941
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_3941
product: tRNA-Ser
SIO_010081: AWJ20_3941
subclass of: SO_0000673
so part of: AWJ20_3941
location: complement(<754109..>754190)
location: region:754109-754190:-1
so has part: feature:754109-754190:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:754109-754190:-1:exon

AWJ20_3942
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TOP1
locus tag: AWJ20_3942
so part of: sequence
location: complement(<754376..>756945)
location: region:754376-756945:-1
so has part: feature:754376-756945:-1:exon
subclass of: SO_0000010

30036019
type: Gene
SIO_000068: ncbigene

position:754376:-1
position: 754376
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:756945:-1
position: 756945
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:754376-756945:-1:exon

AWJ20_3942
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TOP1
locus tag: AWJ20_3942
product: DNA topoisomerase 1
transcript id: XM_018880983.1
SIO_010081: AWJ20_3942
subclass of: SO_0000673
so part of: AWJ20_3942
location: complement(join(<754376..756696,756882..>756945))
location: region:754376-756945:-1
so has part: feature:756882-756945:-1:exon
so has part: feature:754376-756696:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:756882-756945:-1:exon

position:756882:-1
position: 756882
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:754376-756696:-1:exon

position:756696:-1
position: 756696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

AWJ20_3942
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TOP1
locus tag: AWJ20_3942
inference: similar to AA sequence:KEGG_Orthology:K03163
note: Topoisomerase I; nuclear enzyme that relieves torsional strain in DNA by cleaving and re-sealing the phosphodiester backbone; relaxes both positively and negatively supercoiled DNA; functions in replication, transcription, and recombination; role in processing ribonucleoside monophosphates in genomic DNA into irreversible single-strand breaks; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IPI] [PMID 10967121]; GO_component: GO:0005654 - nucleoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 6088500]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003916 - DNA topoisomerase activity [Evidence IEA]; GO_function: GO:0003917 - DNA topoisomerase type I activity [Evidence IEA,IEA]; GO_function: GO:0003917 - DNA topoisomerase type I activity [Evidence IMP] [PMID 2989818]; GO_function: GO:0003917 - DNA topoisomerase type I activity [Evidence IDA] [PMID 6088500]; GO_function: GO:0003918 - DNA topoisomerase type II (ATP-hydrolyzing) activity [Evidence IEA]; GO_function: GO:0031490 - chromatin DNA binding [Evidence IBA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006271 - DNA strand elongation involved in DNA replication [Evidence IMP] [PMID 2549254]; GO_process: GO:0006265 - DNA topological change [Evidence IEA]; GO_process: GO:0006265 - DNA topological change [Evidence IMP] [PMID 2989818]; GO_process: GO:0006265 - DNA topological change [Evidence IDA] [PMID 6088500]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence IMP] [PMID 9199287]; GO_pro…
codon start: 1
product: DNA topoisomerase 1
translation: MPEPIMMDSDMSDDDIPLVSRVASYVEVSDDDDDDDLVLAKRTTTATKRKAISVKTEVNGSPPTKKRASTTVKKEKTTTASKAKKASTATVNGKAKKEVTSKTNGRVKKETGSTASGKTKKEPGAGSKSATIKKEEEEEGTPAIDDEDQDETFRWWEAQNAEDGSDKWNTLEHNGVMFPPPYEPLPSHVRMKYDGKRVELDPVAEEVAGFFGAMLNTDHAKNPTFTANFFNDFVEIVNSSGGAKVNNKKIELKSFEKCDFTEIFEYYDQQRQLKKAIPSSEKKRLKAEKDRMEEKYKTCLLDGRKQPVGNFRIEPPGLFRGRGAHPKTGKLKARVQPEQVTINIGAEAKVPEPPAGHQWAEVRHDKTVSWLAMWRENINGAFKYVFLAQSSSLKGMSDFKKFEKARELKNHVERIRADYRRELKDEVMLNRQRATAMYLIDVLALRAGGEKGEDEADTVGCCSLRYEHVTLQPPNIVTFDFLGKDSIRYFQEVVVDKQVFKNLKIFKRAPKTIGDDIFDRLDPPLLNKHLQNYMPGLTAKVFRTYNASYTMQKQLDLIENKGSVNEKVVAFNAANREVAILCNHQRTVAKSHEASVGKMEDRILELKYSIIKTKKMMLQLDPSLKKKEKAYFEDIDSISKEDVIKIHQKILEREKDRIEKKFIRENEKLKAEGEEIMPEGELKKRLEAIDIMEKEFAAELKSGKPDIKGNATVEKLKVQVEKLEERITNTQLQLKDKEDNSTVALGTSKMNYIDPRLTVMFSKKFNVPIEKLFTKTLREKFAWAIHSADADWKF
SIO_010081: AWJ20_3942
subclass of: SO_0000673
so part of: AWJ20_3942
location: complement(join(754376..756696,756882..756945))
location: region:754376-756945:-1
so has part: feature:756882-756945:-1:exon
so has part: feature:754376-756696:-1:exon

XP_018733619.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:756882-756945:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:754376-756696:-1:exon

AWJ20_3943
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CBP3
locus tag: AWJ20_3943
so part of: sequence
location: complement(<757564..>758625)
location: region:757564-758625:-1
so has part: feature:757564-758625:-1:exon
subclass of: SO_0000010

30036020
type: Gene
SIO_000068: ncbigene

position:757564:-1
position: 757564
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:758625:-1
position: 758625
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:757564-758625:-1:exon

AWJ20_3943
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CBP3
locus tag: AWJ20_3943
product: Cbp3p
transcript id: XM_018880984.1
SIO_010081: AWJ20_3943
subclass of: SO_0000673
so part of: AWJ20_3943
location: complement(<757564..>758625)
location: region:757564-758625:-1
so has part: feature:757564-758625:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:757564-758625:-1:exon

AWJ20_3943
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CBP3
locus tag: AWJ20_3943
inference: similar to AA sequence:KEGG_Orthology:K17662
note: Mitochondrial protein required for assembly of cytochrome bc1 complex; forms a complex with Cbp6p that binds to mt ribosomes near the polypeptide tunnel exit and promotes efficient translation of the COB mRNA; Cbp3p-Cbp6p complex also interacts with newly synthesized cytochrome b (Cobp) and Cbp4p to promote assembly of Cobp into the cytochrome bc1 complex; Cbp3p-Cbp6p complex is sequestered if assembly of Complex III is blocked, downregulating COB mRNA translation; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 23509072]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0032592 - integral component of mitochondrial membrane [Evidence IDA] [PMID 11522252]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005761 - mitochondrial ribosome [Evidence IDA] [PMID 21670217]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11522252]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0043022 - ribosome binding [Evidence IDA,IPI] [PMID 21670217]; GO_process: GO:0034551 - mitochondrial respiratory chain complex III assembly [Evidence IMP] [PMID 11522252]; GO_process: GO:0034551 - mitochondrial respiratory chain complex III assembly [Evidence IMP] [PMID 15759116]; GO_process: GO:0070131 - positive regulation of mitochondrial translation [Evidence IMP] [PMID 21670217]
codon start: 1
product: Cbp3p
translation: MAGVFVGSLRNAGRLAINNSISARSAGASLRAGVSTISSSHNGRFGIRGYSSTPAEDASKEKGADAVSEPATPTPVTTPPFIAKPGSLKDQILKQYQVVDSTYNVKLPAWQNMLGENLVKTFNLDMDRIRSGPVAGALFKDMCKAQAFYQKEGDKITMTPRAKFYYETLGMPQTFNQWYQVTLLHVWILFVRMRSMPRKYCREYQQKLVNSIFEDIDFRLREEIKINSDRMVNNYKKGFNDQLRGSIFAYDEGFYSDDTVLAGALWRNLFESKKDIDMTHIEQLVHYVRTQLYVLDRMSDLDFAAGRFQFIDPSLRYQPLTEGEDKEIKSIVESNRKESTDAASRSTLSKEGW
SIO_010081: AWJ20_3943
subclass of: SO_0000673
so part of: AWJ20_3943
location: complement(757564..758625)
location: region:757564-758625:-1
so has part: feature:757564-758625:-1:exon

XP_018733620.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:757564-758625:-1:exon

AWJ20_3944
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: EMC2
locus tag: AWJ20_3944
so part of: sequence
location: <758904..>759806
location: region:758904-759806:1
so has part: feature:758904-759806:1:exon
subclass of: SO_0000010

30036021
type: Gene
SIO_000068: ncbigene

position:758904:1
position: 758904
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:759806:1
position: 759806
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:758904-759806:1:exon

AWJ20_3944
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: EMC2
locus tag: AWJ20_3944
product: Emc2p
transcript id: XM_018880985.1
SIO_010081: AWJ20_3944
subclass of: SO_0000673
so part of: AWJ20_3944
location: <758904..>759806
location: region:758904-759806:1
so has part: feature:758904-759806:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:758904-759806:1:exon

AWJ20_3944
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: EMC2
locus tag: AWJ20_3944
note: Member of conserved ER transmembrane complex; required for efficient folding of proteins in the ER; null mutant displays induction of the unfolded protein response; homologous to worm Y57G7A.10/EMC-2, fly CG17556, human TTC35; GO_component: GO:0072546 - ER membrane protein complex [Evidence IDA] [PMID 19325107]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034975 - protein folding in endoplasmic reticulum [Evidence IGI] [PMID 19325107]
codon start: 1
product: Emc2p
translation: MSSETKEKLLTSMANASYYNASPRDLESLHAESRQYLSKAQHLIPEEQLLGLLEQHFYLALLTCKDSEAKLVLQRLTDRITEDPSRVAILKAQYIEATDGPEAAQKFLSARPTGDLRAFKRKTVILKQKGDIKTYIKELLRYVEEVAPNDSEAWAELAEAYVSIGQYPQAIHALEEVLISAPQASNIFARLGEVFLIEATTSSPNKVTSDQLTLLIHSAQHFLRSVELSPDYIRGWCGALIASSKILAWPKLAAEESTKYTKISKIAKKQTQRLIKTAKEAAISDEDIAAAKIIIAQYEN
SIO_010081: AWJ20_3944
subclass of: SO_0000673
so part of: AWJ20_3944
location: 758904..759806
location: region:758904-759806:1
so has part: feature:758904-759806:1:exon

XP_018733621.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:758904-759806:1:exon

AWJ20_3945
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TIP41
locus tag: AWJ20_3945
so part of: sequence
location: complement(<760023..>760913)
location: region:760023-760913:-1
so has part: feature:760023-760913:-1:exon
subclass of: SO_0000010

30036022
type: Gene
SIO_000068: ncbigene

position:760023:-1
position: 760023
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:760913:-1
position: 760913
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:760023-760913:-1:exon

AWJ20_3945
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TIP41
locus tag: AWJ20_3945
product: Tip41p
transcript id: XM_018880986.1
SIO_010081: AWJ20_3945
subclass of: SO_0000673
so part of: AWJ20_3945
location: complement(<760023..>760913)
location: region:760023-760913:-1
so has part: feature:760023-760913:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:760023-760913:-1:exon

AWJ20_3945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TIP41
locus tag: AWJ20_3945
inference: similar to AA sequence:KEGG_Orthology:K17607
note: Protein that interacts with Tap42p, which regulates PP2A; component of the TOR (target of rapamycin) signaling pathway; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0009968 - negative regulation of signal transduction [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IMP,IPI] [PMID 11741537]
codon start: 1
product: Tip41p
translation: MDHITDKENRQGVPVFQTPRNGFAVPSPSQTTRVWTSPDNEWKVTTVKKPILNSSEIDAATEKLGIPIPEMIFGNNQVKIENVPSGLCICFSALDALDLVDKTGSRDGLVKVAYAKEWMDSREKSPHINDDVKGIVKPFDWTYTSAYKGDTTVKGVLADPWVEDKDVILPMELLSRPDPILFFDDVCLYEDELGDNGIANFSVKIRVMPERLLLLSRLFIRVDDVLFRVRDTRIFVEFSQGVLVREYKAHEETYDKVKKRVPIGSQDYSQNLRDSNWVVKNIACSKTVHEIIELRK
SIO_010081: AWJ20_3945
subclass of: SO_0000673
so part of: AWJ20_3945
location: complement(760023..760913)
location: region:760023-760913:-1
so has part: feature:760023-760913:-1:exon

XP_018733622.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:760023-760913:-1:exon

AWJ20_3946
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3946
so part of: sequence
location: complement(<765914..>767086)
location: region:765914-767086:-1
so has part: feature:765914-767086:-1:exon
subclass of: SO_0000010

30036023
type: Gene
SIO_000068: ncbigene

position:765914:-1
position: 765914
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:767086:-1
position: 767086
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:765914-767086:-1:exon

AWJ20_3946
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3946
product: hypothetical protein
transcript id: XM_018880987.1
SIO_010081: AWJ20_3946
subclass of: SO_0000673
so part of: AWJ20_3946
location: complement(<765914..>767086)
location: region:765914-767086:-1
so has part: feature:765914-767086:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:765914-767086:-1:exon

AWJ20_3946
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3946
codon start: 1
product: hypothetical protein
translation: MKSSKIFPFKGERKKGGDGVELNREIANVEAPIAQITSTHAGSMLGHRTEQKYPPLESIISNQSSAPYTLSNLQEYLRTIHCQEPLDLILMGYQFSTLFTSDETSISIAEKADKINEVRQLWNKIVSTFLLDSSPQEVNLPGELREHFYLIPVSQSVTTENYKHLQQAIEYAKDIIKENNFMLFIRNTQTMGALKANTRAKIQLNTSFMDQDHSIGHGRGYSIGSSPTLNNPPHPLGCPQSNERSLRAASLAVPSKRNHRCISPTFPQIVDDGNLITTTTTSTFPSTLNANVEEDISRWTLQEPVRMFNRSPSPGTGKSPGASPGRTISPSPTPSPRLSPVPASKSKKDLKNGPGVDSVTAVNASTFPHLLKRMSGKLKIRQQSSAHTPP
SIO_010081: AWJ20_3946
subclass of: SO_0000673
so part of: AWJ20_3946
location: complement(765914..767086)
location: region:765914-767086:-1
so has part: feature:765914-767086:-1:exon

XP_018733623.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:765914-767086:-1:exon

AWJ20_3947
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: GOR1
locus tag: AWJ20_3947
so part of: sequence
location: <769234..>770232
location: region:769234-770232:1
so has part: feature:769234-770232:1:exon
subclass of: SO_0000010

30036024
type: Gene
SIO_000068: ncbigene

position:769234:1
position: 769234
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:770232:1
position: 770232
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:769234-770232:1:exon

AWJ20_3947
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: GOR1
locus tag: AWJ20_3947
product: Gor1p
transcript id: XM_018880988.1
SIO_010081: AWJ20_3947
subclass of: SO_0000673
so part of: AWJ20_3947
location: <769234..>770232
location: region:769234-770232:1
so has part: feature:769234-770232:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:769234-770232:1:exon

AWJ20_3947
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: GOR1
locus tag: AWJ20_3947
note: Glyoxylate reductase; null mutation results in increased biomass after diauxic shift; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0047964 - glyoxylate reductase activity [Evidence IEA]; GO_function: GO:0047964 - glyoxylate reductase activity [Evidence IMP] [PMID 17173333]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence ISS] [PMID 9341119]; GO_process: GO:0009436 - glyoxylate catabolic process [Evidence IMP] [PMID 17173333]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence ISS] [PMID 9341119]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]
codon start: 1
product: Gor1p
translation: MTAIKNQILLLGSVSLAKKEYQELSELAELISYTSSSREEFIADLKTKYKEITAIYSTFAGEKAVGGIDEEIVSHFPPSLKYICHNGAGYDLVQVEYLTKRGIQLSNTPDAVANATADTAVYLILSALRNFSRLSEELRKGNWLGTVPLAREPKDKVLGILGMGSIGHLVHEKVIPLGFSKVIYYNRHQLPKEKEKGAEYVTFDELLAQSDVLFVSVPLNAGTRHIINAEALAKAKDGVVVVNTARGAVIDEEALVQALESGKVSNVGLDVFEFEPKIHPGLLANPNAVLLPHVGTHTVESRTEMELTVIRNIRSALTTGKVIDVVPEQQKK
SIO_010081: AWJ20_3947
subclass of: SO_0000673
so part of: AWJ20_3947
location: 769234..770232
location: region:769234-770232:1
so has part: feature:769234-770232:1:exon

XP_018733624.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:769234-770232:1:exon

AWJ20_3948
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3948
so part of: sequence
location: complement(<770433..>771488)
location: region:770433-771488:-1
so has part: feature:770433-771488:-1:exon
subclass of: SO_0000010

30036025
type: Gene
SIO_000068: ncbigene

position:770433:-1
position: 770433
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:771488:-1
position: 771488
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:770433-771488:-1:exon

AWJ20_3948
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3948
product: hypothetical protein
transcript id: XM_018880989.1
SIO_010081: AWJ20_3948
subclass of: SO_0000673
so part of: AWJ20_3948
location: complement(<770433..>771488)
location: region:770433-771488:-1
so has part: feature:770433-771488:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:770433-771488:-1:exon

AWJ20_3948
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3948
codon start: 1
product: hypothetical protein
translation: MASSKDIHSTLLAEIANLLKILDHEGGNLDHAVTHKVENSLNAIKDISSLWQAHTTKLALAFKPPISGEAALKCLEEAGKLPRLLVAAYNAIDEDDKTGLMKPEVKDHIDMLFLAENSFLEELKEAVVRERLLLQNLRPASADSNARTLVSVGEVWESCKKLQALIDNGPVAVLQGKITAYSGIIRDAVEEFKELMEEEREDSDDENNDDDVDKPPSAVSDSEEVDDFEEFNFSAPSKPLSKELRQVGIKWKDMFIRLPTVTEVLCKTLCKRLENTESTKIIKINTCIKSISEATDDLVFGFSDNSITDVKEGFVVVTKELETIADLTTRPDDNFSTQLRAYIEKFKANNS
SIO_010081: AWJ20_3948
subclass of: SO_0000673
so part of: AWJ20_3948
location: complement(770433..771488)
location: region:770433-771488:-1
so has part: feature:770433-771488:-1:exon

XP_018733625.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:770433-771488:-1:exon

AWJ20_3949
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3949
so part of: sequence
location: complement(<776972..>777658)
location: region:776972-777658:-1
so has part: feature:776972-777658:-1:exon
subclass of: SO_0000010

30036026
type: Gene
SIO_000068: ncbigene

position:776972:-1
position: 776972
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:777658:-1
position: 777658
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:776972-777658:-1:exon

AWJ20_3949
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3949
product: hypothetical protein
transcript id: XM_018880990.1
SIO_010081: AWJ20_3949
subclass of: SO_0000673
so part of: AWJ20_3949
location: complement(<776972..>777658)
location: region:776972-777658:-1
so has part: feature:776972-777658:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:776972-777658:-1:exon

AWJ20_3949
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3949
note: expressed protein
codon start: 1
product: hypothetical protein
translation: MPLEQRYDTLQDNYIVRLHRNVDPENPVNAESTWWRKHMEHNELVQRLYEVLPKEEIFQDRIRRRKPPWKKEDMECESKAWKVKSELKKKIYQRHHTIWETQYRTSAKGEFYRSYTLPRLYNADHKNPLRYFLNECSKNELSKLVQLRTAKGAFGMFFKRFKINNRPHQCECGEEEDVKHLLCECPVTENHRQILRDASAMLDLKVLLDSKKGLKAVLAFLAKAPQLL
SIO_010081: AWJ20_3949
subclass of: SO_0000673
so part of: AWJ20_3949
location: complement(776972..777658)
location: region:776972-777658:-1
so has part: feature:776972-777658:-1:exon

XP_018733626.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:776972-777658:-1:exon

AWJ20_3950
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3950
so part of: sequence
location: <781841..>782137
location: region:781841-782137:1
so has part: feature:781841-782137:1:exon
subclass of: SO_0000010

30036028
type: Gene
SIO_000068: ncbigene

position:781841:1
position: 781841
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:782137:1
position: 782137
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:781841-782137:1:exon

AWJ20_3950
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3950
product: hypothetical protein
transcript id: XM_018880992.1
SIO_010081: AWJ20_3950
subclass of: SO_0000673
so part of: AWJ20_3950
location: <781841..>782137
location: region:781841-782137:1
so has part: feature:781841-782137:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:781841-782137:1:exon

AWJ20_3950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3950
codon start: 1
product: hypothetical protein
translation: MDPNSQPAFSSTVYFVPSGSSGHGLNLVKTLASVGNSVVITTAANPEMSIDLQNWVKNHSNVHVLKYDGSNESDADDVANQIIELTGGIDVVVNTRTW
SIO_010081: AWJ20_3950
subclass of: SO_0000673
so part of: AWJ20_3950
location: 781841..782137
location: region:781841-782137:1
so has part: feature:781841-782137:1:exon

XP_018733627.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:781841-782137:1:exon

AWJ20_3951
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PBP1
locus tag: AWJ20_3951
so part of: sequence
location: <783804..>787265
location: region:783804-787265:1
so has part: feature:783804-787265:1:exon
subclass of: SO_0000010

30036029
type: Gene
SIO_000068: ncbigene

position:783804:1
position: 783804
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:787265:1
position: 787265
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:783804-787265:1:exon

AWJ20_3951
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PBP1
locus tag: AWJ20_3951
product: Pbp1p
transcript id: XM_018880993.1
SIO_010081: AWJ20_3951
subclass of: SO_0000673
so part of: AWJ20_3951
location: <783804..>787265
location: region:783804-787265:1
so has part: feature:783804-787265:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:783804-787265:1:exon

AWJ20_3951
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PBP1
locus tag: AWJ20_3951
note: Component of glucose deprivation induced stress granules; involved in P-body-dependent granule assembly; similar to human ataxin-2; interacts with Pab1p to regulate mRNA polyadenylation; interacts with Mkt1p to regulate HO translation; protein increases in abundance and relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 18981231]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 15082763]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IGI,IMP,IPI] [PMID 9819425]; GO_process: GO:0045727 - positive regulation of translation [Evidence IMP,IPI] [PMID 15082763]; GO_process: GO:0034063 - stress granule assembly [Evidence IMP] [PMID 18981231]
codon start: 1
product: Pbp1p
translation: MSTTASRGGRQPSVSGRNGSNGGGRRFNGGGGGNSGQGSSSSANGNGINSGTNLAAVDPPLVRGGPGGRASLSGPSTTSGPGSNATAGSGSGAGSRGSGGIGPKNAWSKPLQSSVTTTSGGSSGSGTTVSNNNSNSNSGALSNVAGSNESNSQNHSSAAAATPASSAFSSGSTESVASGDPEKHMNDRLTFLLAKSIGCTAIVTVASGHRYKGILAGALTDSDLGVVLRFAEKTSSVPGIEDEDAAADPNGNSGTSGTTGNKASGNNSTSAAGDDGKNKRNGSEEQKRFDKLVIAPKDCVDIFIENPDLTPDVKSETPANSVSSGINKSSGAFKTDTDISGRRNGLGGERELQRWTPDSNIELGVTLEETAGSNSGGWDQFSVNKQKFGVASTYDEHYYTTAIDKSHPEYQERARRAEQIAAEITKSGHGGNVHLAEERGLAIDDSGLDEEDKYSGVDRGQQKRDSLGQTSGQSQRVPVQKLFQQAHREKLQGQGQAQTGYEPDQRQTPSPPVPSGSTKAKKYTPPQFRAPTGVKGVPGVPYDPAIVSSSLASPDGSLAPRTQDMSARVGKSDDKSNTPTAVAPAATASATASAAPVVQAANSEGANASSNTSASDSPSGGIEKELAGNFRQFVSVEVQRLNQKKQYLQKREKSERLHDFKKFSEDYKINAPVPLDLVPILAKGKDKQEEIVQRAAANAAAAHSPKTSPSTSKTSTVAPALPATGSPRGTSTESSPAITNNTHPSTLDGATSTGTKAVLPNKPTTKPSTVQPTPAVPAVPVPVSTAPVTTSAPASTPATGTPVPSAAAAEKPKFNFKVPGFKPNPSAHSFTPFGAKGSPSPVASQISSPQTKVTAPVPETGSATGRAPVATATANSATSGTATPNSFFGGRQPGAKSRQNKFNPFLEAKSHHKPDETFTIERAFATPPTWTPGVEKSYSEVLTSLKISSPRIGGFFPPGSGGIGSPRPSVTGFAPSASPMGMSGAANLVAMMPATAFDEVGNPIMTTSPPPIPGQMMPAGMVPVGYPQYVPQYGAPQYYGRPPPMGFPMGYLPPQAGYGSPRMHQAMMVPPGQPSNGYYPPQHQFIPQQRTHHNNNNNYSRRGSAGPGNHGGGGGGPPTSLPPQMQGQFPPPPASNALNSKSPTPTTPVEEEK
SIO_010081: AWJ20_3951
subclass of: SO_0000673
so part of: AWJ20_3951
location: 783804..787265
location: region:783804-787265:1
so has part: feature:783804-787265:1:exon

XP_018733628.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:783804-787265:1:exon

AWJ20_3952
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3952
so part of: sequence
location: <787754..>789199
location: region:787754-789199:1
so has part: feature:787754-789199:1:exon
subclass of: SO_0000010

30036030
type: Gene
SIO_000068: ncbigene

position:787754:1
position: 787754
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:789199:1
position: 789199
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:787754-789199:1:exon

AWJ20_3952
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3952
product: hypothetical protein
transcript id: XM_018880994.1
SIO_010081: AWJ20_3952
subclass of: SO_0000673
so part of: AWJ20_3952
location: <787754..>789199
location: region:787754-789199:1
so has part: feature:787754-789199:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:787754-789199:1:exon

AWJ20_3952
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3952
codon start: 1
product: hypothetical protein
translation: MDKLITELIEQPKEGSHFRDPGLGPLPSAQNLDKARKVIAETSNKLPLEGLGIEKVAGILTNDILPALPNQSSHYYGFVTGGATPAARLADHLAVWADTMPQVHLPEESVSTDVEDAALKLLLDLLKLERTQWLGRTITTGATASNVLALACARDWLVGSDEASIAEHGFANALKASGVQDIKIYVCKSHSSIGKAASIVGLGRKSVVEISDAAHLWNFDIAKLEEQLISDKSKSIRSIICANFGEVNTGQYTQDIKELRRLCDQYKAWLHIDGAFGVYLRALADKYDSAYHQLAQRVTAGLELADSITGDSHKTLNVPYDSGVFFTKHKELLQHIFHNPGAVYLSGTSDSIPSPLNIGIENSRRFRALAVYSTLLAYGEAGYSQFIERIIRFSQRLSAWIHQSPDYELLLESPKDAISVVLFRAKDTEANKTLKQRINQSGKIYVSGTVWNGSPAVRIAPCNWNIADGDEQIVINVLSTF
SIO_010081: AWJ20_3952
subclass of: SO_0000673
so part of: AWJ20_3952
location: 787754..789199
location: region:787754-789199:1
so has part: feature:787754-789199:1:exon

XP_018733629.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:787754-789199:1:exon

AWJ20_3953
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RRN7
locus tag: AWJ20_3953
so part of: sequence
location: <789406..>791118
location: region:789406-791118:1
so has part: feature:789406-791118:1:exon
subclass of: SO_0000010

30036031
type: Gene
SIO_000068: ncbigene

position:789406:1
position: 789406
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:791118:1
position: 791118
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:789406-791118:1:exon

AWJ20_3953
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RRN7
locus tag: AWJ20_3953
product: Rrn7p
transcript id: XM_018880995.1
SIO_010081: AWJ20_3953
subclass of: SO_0000673
so part of: AWJ20_3953
location: <789406..>791118
location: region:789406-791118:1
so has part: feature:789406-791118:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:789406-791118:1:exon

AWJ20_3953
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RRN7
locus tag: AWJ20_3953
inference: similar to AA sequence:KEGG_Orthology:K15219
note: Component of the core factor (CF) rDNA transcription factor complex; CF is required for transcription of 35S rRNA genes by RNA polymerase I and is composed of Rrn6p, Rrn7p, and Rrn11p; GO_component: GO:0070860 - RNA polymerase I core factor complex [Evidence IDA] [PMID 7958901]; GO_component: GO:0070860 - RNA polymerase I core factor complex [Evidence IDA] [PMID 8702872]; GO_component: GO:0070860 - RNA polymerase I core factor complex [Evidence IDA] [PMID 8887672]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22362748]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0001164 - RNA polymerase I CORE element sequence-specific DNA binding [Evidence IDA] [PMID 18451108]; GO_function: GO:0001187 - RNA polymerase I CORE element sequence-specific DNA binding transcription factor recruiting transcription factor activity [Evidence IC]; GO_function: GO:0017025 - TBP-class protein binding [Evidence IDA,IPI] [PMID 8702872]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006361 - transcription initiation from RNA polymerase I promoter [Evidence NAS] [PMID 7958901]; GO_process: GO:0042790 - transcription of nuclear large rRNA transcript from RNA polymerase I promoter [Evidence IDA,IMP] [PMID 7958901]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]
codon start: 1
product: Rrn7p
translation: MSSIWVRGPVCGVDNCRSRLWRSVDGRKVCQYGHVKEGIEVGDDDDDFLAFGRVISRPSSRRNSSAQEKEHALIGAAAQALYFQCLQVVLRQQVKWLIEEKGVPSELEGVVRSLWTILVNQTKFGVSNMNSSRASSAAKSDASQDESEKYTTHNDEDTGNDEDEDDYDDDGDEENNYRNDSDTERERRGRRKIKTEKLPEIKFGHLVVICYLGCVTIRSPVYLYDFQKWIERLEFPFIRALAYLPLEMSQKVVGTHYRGLLSPEIPRDGKLHGLLAELGSFYIHSGVTFPPQPVEPLLFRMIKDLLLPPEIYVASEKLAEALEISLLVSISNHYYPQFETALFGVIIIAVRLCYGVGDEWTRVPKSYSTPASKTIDWDLWCDIMRKIWVEDDEFFDVNESDICYWDPEKSERYLSWVENSLLILPRFRSEYKRLLQLFPLGKYDKSGNPMSTKAFEPRQGHPRSDLAIHAGEKEIEELYRIVQSTTRNVECHYPEDVLDKIKVKGVLLSPGARFETYRQNDKLPLFMTIVCHVGSKLCGVSFDSVKRLIHDLDRKCNKLDFSAMSEQSFY
SIO_010081: AWJ20_3953
subclass of: SO_0000673
so part of: AWJ20_3953
location: 789406..791118
location: region:789406-791118:1
so has part: feature:789406-791118:1:exon

XP_018733630.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:789406-791118:1:exon

AWJ20_3954
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CDC21
locus tag: AWJ20_3954
so part of: sequence
location: complement(<791308..>792243)
location: region:791308-792243:-1
so has part: feature:791308-792243:-1:exon
subclass of: SO_0000010

30036032
type: Gene
SIO_000068: ncbigene

position:791308:-1
position: 791308
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:792243:-1
position: 792243
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:791308-792243:-1:exon

AWJ20_3954
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CDC21
locus tag: AWJ20_3954
product: thymidylate synthase
transcript id: XM_018880996.1
SIO_010081: AWJ20_3954
subclass of: SO_0000673
so part of: AWJ20_3954
location: complement(<791308..>792243)
location: region:791308-792243:-1
so has part: feature:791308-792243:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:791308-792243:-1:exon

AWJ20_3954
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CDC21
locus tag: AWJ20_3954
inference: similar to AA sequence:KEGG_Orthology:K00560
note: Thymidylate synthase; required for de novo biosynthesis of pyrimidine deoxyribonucleotides; expression is induced at G1/S; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8132557]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0004799 - thymidylate synthase activity [Evidence IEA,IEA]; GO_function: GO:0004799 - thymidylate synthase activity [Evidence IMP] [PMID 334734]; GO_function: GO:0004799 - thymidylate synthase activity [Evidence IDA] [PMID 6287238]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006231 - dTMP biosynthetic process [Evidence IEA]; GO_process: GO:0006231 - dTMP biosynthetic process [Evidence IMP] [PMID 334734]; GO_process: GO:0006231 - dTMP biosynthetic process [Evidence IMP] [PMID 794696]; GO_process: GO:0006235 - dTTP biosynthetic process [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0009165 - nucleotide biosynthetic process [Evidence IEA]
codon start: 1
product: thymidylate synthase
translation: MTSDESLTTGGPVKTNTENVEERAYLDLCKDIIEQGEFRADRTGTGTYSLFAPNQLRFSLRNGTLPLLTTKRVYFKGVLEELLWFVKGSTDSKLLSDRGVHIWDGNGSREFLDKRGLEHRREGDLGPVYGFQWRHFGAKYEDCDTDYSGKGVDQLAEVIRKIKETPYDRRIIMSAWNPADMNDMALPPCHVFSQFYVSFRNGKPELSCQLYQRSCDMGLGVPFNIASYALLTKMIAKVCGIECGDFIHTMGDAHVYADHVEALKVQIARTPTDFPTLRFARDITDIDDFKYEDFVVEGYKPQSKIEMKMSV
SIO_010081: AWJ20_3954
subclass of: SO_0000673
so part of: AWJ20_3954
location: complement(791308..792243)
location: region:791308-792243:-1
so has part: feature:791308-792243:-1:exon

XP_018733631.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:791308-792243:-1:exon

AWJ20_3955
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3955
so part of: sequence
location: complement(<792503..>792573)
location: region:792503-792573:-1
so has part: feature:792503-792573:-1:exon
subclass of: SO_0000663

30036033
type: Gene
SIO_000068: ncbigene

position:792503:-1
position: 792503
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:792573:-1
position: 792573
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:792503-792573:-1:exon

AWJ20_3955
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_3955
product: tRNA-Gly
SIO_010081: AWJ20_3955
subclass of: SO_0000673
so part of: AWJ20_3955
location: complement(<792503..>792573)
location: region:792503-792573:-1
so has part: feature:792503-792573:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:792503-792573:-1:exon

AWJ20_3956
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: GIP3
locus tag: AWJ20_3956
so part of: sequence
location: <798789..>802895
location: region:798789-802895:1
so has part: feature:798789-802895:1:exon
subclass of: SO_0000010

30036034
type: Gene
SIO_000068: ncbigene

position:798789:1
position: 798789
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:802895:1
position: 802895
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:798789-802895:1:exon

AWJ20_3956
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: GIP3
locus tag: AWJ20_3956
product: protein phosphatase regulator GIP3
transcript id: XM_018880997.1
SIO_010081: AWJ20_3956
subclass of: SO_0000673
so part of: AWJ20_3956
location: join(<798789..799029,799108..>802895)
location: region:798789-802895:1
so has part: feature:798789-799029:1:exon
so has part: feature:799108-802895:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:798789-799029:1:exon

position:799029:1
position: 799029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:799108-802895:1:exon

position:799108:1
position: 799108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

AWJ20_3956
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: GIP3
locus tag: AWJ20_3956
codon start: 1
product: protein phosphatase regulator GIP3
translation: MTANESTLNGVDHSSPINISPSARNPLLDSTSSLSRSVTSSQLELEPTHNGVSNTDVDWLSRGSSLKDRGQYPLPNSVAGGRVRTRSNSLPPVPSGERLPPQLGRSKATTGVSVEGGQASSKELGGSDQSGENIINNKKKIPAAAAAASTIEEDEEAEESSEKGPPLSPTSTTLRNPAPGPGYANQAVTAHSKLSQGLRSSKTMPIALEKTQVGSELTRSISVSSAALGKSPSDKLPSTSPSNARRGSWFHNLSSKFSSSSSHNNNGSSVVSNQRRASTSGLKNTVPGSTLSTGSVKDSPSSGLGLDVESHSNLAHAHVAGGNIPPSANPIFSPSYTNNRNLPTNRILDTHPPRTSSPKLSPEIAVGGTAQSPSPSSAFPFKQEHNRSNSVSSTGSLVNRLRRLSTRSNGSQSDLISTQFKAESQQVRVILNKNHSKKPCKIPELEGVLPPTVRFKAEVFETDPPQQIPARNPRTGNITFGPNGEINREPLPPNGYPMPLYVLPRNYGASTLAASQSAYESAIRVANSVKSSGGVSIFKSRNSLSSTTSFSSNNTEYDEEKDVSESDRTQSLKIDKPMHSAERMGSGSTNTTTASTGDSSVEDDDLDEQGKELTLETIYTRCCHLREILPIAATLKQIKDRKPPLEVIKMMNPRPTLIEILSLSDFLSVVPVRMLIFDNVSLSTEMFRIILSSVVTSDHLERLSLRNLILDDKGWKLFCAFFSENSSLVKLDLSIEKVNSKQPSDRSLLDWDLFTKALVARGGVEELILNGCVVPSDELAPLIFNGCSLSTKRLGLALNDLLPEDLQVIMKWAADPSCVCEGLDLGGNLMDQSWDAIKEILKGKCLKFLSLNSTGLANVTKANEIFGGVCSHSNLIMLDLSSNPDLFPKFTHVLAKVLPTFTDLRRIHLESNNLSPEDVMLLADAFARCPKLVHISVLDNRRLDSTACAALAIATHISNTIYRVESDNDLWPVILQRRLAHNCLVNMELTAGRITQQEKDSDDDGLFGKEDLMNTGNYIAMAAEELLKSIKEDDDNDSEDAQGHLVVSEMVRRAKQVRVKIRKTLDELFEKRRSGVGLVVEEKERLVRLCFLDGTLEKVLDKYNQTKLYKHENQNEESTKGSGNDVSTQNRMGTTSLSGKSVPPLNMPPLLPVDREVVLSTTVSTHPDFTIAPVSEYPEVQSLSRRSSVTSLHRKEQELEEGELHRFGTFIRSHRDSHTDLSDDDEDEDAHVVDSEEDIRRRSSDEGTGEELRQKILAAKGSQSVSELIQQLQQMHGPELDRILAAGKDKSLSERDDILLRLNHAARPRSAQASTPPEDTKLLAGDYVTLDSVVDDIARALT
SIO_010081: AWJ20_3956
subclass of: SO_0000673
so part of: AWJ20_3956
location: join(798789..799029,799108..802895)
location: region:798789-802895:1
so has part: feature:798789-799029:1:exon
so has part: feature:799108-802895:1:exon

XP_018733632.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:798789-799029:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:799108-802895:1:exon

AWJ20_3957
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RPL5
locus tag: AWJ20_3957
so part of: sequence
location: complement(<803096..>803986)
location: region:803096-803986:-1
so has part: feature:803096-803986:-1:exon
subclass of: SO_0000010

30036035
type: Gene
SIO_000068: ncbigene

position:803096:-1
position: 803096
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:803986:-1
position: 803986
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:803096-803986:-1:exon

AWJ20_3957
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RPL5
locus tag: AWJ20_3957
product: ribosomal 60S subunit protein L5
transcript id: XM_018880998.1
SIO_010081: AWJ20_3957
subclass of: SO_0000673
so part of: AWJ20_3957
location: complement(<803096..>803986)
location: region:803096-803986:-1
so has part: feature:803096-803986:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:803096-803986:-1:exon

AWJ20_3957
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RPL5
locus tag: AWJ20_3957
inference: similar to AA sequence:KEGG_Orthology:K02932
note: Ribosomal 60S subunit protein L5; homologous to mammalian ribosomal protein L5 and bacterial L18; binds 5S rRNA and is required for 60S subunit assembly; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 11983894]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0008097 - 5S rRNA binding [Evidence IEA]; GO_function: GO:0008097 - 5S rRNA binding [Evidence IDA] [PMID 8764831]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 11983894]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 11983894]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 8474444]; GO_process: GO:0006412 - translation [Evidence IEA]
codon start: 1
product: ribosomal 60S subunit protein L5
translation: MAFQKIEKTAAYHSRYQTPFRRRREGKTDYYARKRLVTQHKAKYNSPKYRLVIRFTKKDIIAQVVSSQITGDVVLSAAYAHELPRYGIKHGLTNWSAAYAVGLLIARRTLQKLGLDETYQGDEEASGEYSLTEAVEDGPRPFKVFLDVGLTRTTTGNRVFGAMKGASDGGLYIPHSAKRFPGFDIETEELDADVLRKYIVGGHVAEYMEELADDDEERYRTLFKSYIEDDIEADGVEDIYTEAHEKIRADPSFVPSNKKSKEEYKAISLKYKQKKLTSEERKAKVAAKIAEFQANN
SIO_010081: AWJ20_3957
subclass of: SO_0000673
so part of: AWJ20_3957
location: complement(803096..803986)
location: region:803096-803986:-1
so has part: feature:803096-803986:-1:exon

XP_018733633.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:803096-803986:-1:exon

AWJ20_3958
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3958
so part of: sequence
location: complement(<807826..>808116)
location: region:807826-808116:-1
so has part: feature:807826-808116:-1:exon
subclass of: SO_0000010

30036036
type: Gene
SIO_000068: ncbigene

position:807826:-1
position: 807826
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:808116:-1
position: 808116
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:807826-808116:-1:exon

AWJ20_3958
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3958
product: putative amidotransferase
transcript id: XM_018880999.1
SIO_010081: AWJ20_3958
subclass of: SO_0000673
so part of: AWJ20_3958
location: complement(<807826..>808116)
location: region:807826-808116:-1
so has part: feature:807826-808116:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:807826-808116:-1:exon

AWJ20_3958
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3958
note: Putative glutamine amidotransferase; has Aft1p-binding motif in the promoter; may be involved in copper and iron homeostasis; YLR126C is not an essential protein; relocalizes from nucleus to cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IEP,ISS] [PMID 14534306]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IEP,ISS] [PMID 14534306]; GO_process: GO:0006541 - glutamine metabolic process [Evidence IEA]
codon start: 1
product: putative amidotransferase
translation: MEMHRDIVPDLPINTELLFSNDICYNQGFYRKDSILTVQGHPEFNEDIINKIVDVRADTGVISPELANDARNRSGDRNDGPGLAKVMVKFITEGLE
SIO_010081: AWJ20_3958
subclass of: SO_0000673
so part of: AWJ20_3958
location: complement(807826..808116)
location: region:807826-808116:-1
so has part: feature:807826-808116:-1:exon

XP_018733634.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:807826-808116:-1:exon

AWJ20_3959
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3959
so part of: sequence
location: complement(<808285..>808620)
location: region:808285-808620:-1
so has part: feature:808285-808620:-1:exon
subclass of: SO_0000010

30036037
type: Gene
SIO_000068: ncbigene

position:808285:-1
position: 808285
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:808620:-1
position: 808620
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:808285-808620:-1:exon

AWJ20_3959
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3959
product: amidotransferase (predicted)
transcript id: XM_018881000.1
SIO_010081: AWJ20_3959
subclass of: SO_0000673
so part of: AWJ20_3959
location: complement(<808285..>808620)
location: region:808285-808620:-1
so has part: feature:808285-808620:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:808285-808620:-1:exon

AWJ20_3959
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3959
codon start: 1
product: amidotransferase (predicted)
translation: MSHIAILEADTPMPSVAEVHGSYGDIFKRLLLNAKLDPKSVIKAYDVVTKQEYPNSLDGVDAILITGSKHNAFGDDEWIIKLVNFTKQAIDAGIKVVGTYRIYSWFPASYS
SIO_010081: AWJ20_3959
subclass of: SO_0000673
so part of: AWJ20_3959
location: complement(808285..808620)
location: region:808285-808620:-1
so has part: feature:808285-808620:-1:exon

XP_018733635.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:808285-808620:-1:exon

AWJ20_3960
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3960
so part of: sequence
location: complement(<809345..>810463)
location: region:809345-810463:-1
so has part: feature:809345-810463:-1:exon
subclass of: SO_0000010

30036039
type: Gene
SIO_000068: ncbigene

position:809345:-1
position: 809345
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:810463:-1
position: 810463
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:809345-810463:-1:exon

AWJ20_3960
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3960
product: hypothetical protein
transcript id: XM_018881002.1
SIO_010081: AWJ20_3960
subclass of: SO_0000673
so part of: AWJ20_3960
location: complement(<809345..>810463)
location: region:809345-810463:-1
so has part: feature:809345-810463:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:809345-810463:-1:exon

AWJ20_3960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3960
codon start: 1
product: hypothetical protein
translation: MTVLLFMSMTLKFWQIFDYKWIVLSYIITGIFGSGVLSAVMVSSYVTDSIKPRDRATAMGYVTACVLTGKALGPLISSHVIRCMNGKLIGVPLVACLFDAAALVWWKFTPESRQLSVNTKSMPMSRREEGSALSLALDRLNIFRSLYTIKNIAASQPNPASKNIFILISIDLLFEIIISGRANIAILYPEMKFGWTAVEIGYLQSATAVYRIVLLVLLIPHFIKLLQKYYDEDEEELTGQIAMQEHCITRSQKVIIAIGNCFECVGYMGYGIATKGLEYSISYFISTTGVFSKPAVQSGLLNLIPADQVGEFLGAKGVLDGITGLMFSSIGLSFYSYTVARNPAIIFYVCTFGYLIVVLLASRLRLNRQLHL
SIO_010081: AWJ20_3960
subclass of: SO_0000673
so part of: AWJ20_3960
location: complement(809345..810463)
location: region:809345-810463:-1
so has part: feature:809345-810463:-1:exon

XP_018733636.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:809345-810463:-1:exon

AWJ20_3961
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: YKU70
locus tag: AWJ20_3961
so part of: sequence
location: complement(<811717..>812742)
location: region:811717-812742:-1
so has part: feature:811717-812742:-1:exon
subclass of: SO_0000010

30036040
type: Gene
SIO_000068: ncbigene

position:811717:-1
position: 811717
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:812742:-1
position: 812742
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:811717-812742:-1:exon

AWJ20_3961
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: YKU70
locus tag: AWJ20_3961
product: Yku70p
transcript id: XM_018881003.1
SIO_010081: AWJ20_3961
subclass of: SO_0000673
so part of: AWJ20_3961
location: complement(<811717..>812742)
location: region:811717-812742:-1
so has part: feature:811717-812742:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:811717-812742:-1:exon

AWJ20_3961
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: YKU70
locus tag: AWJ20_3961
inference: similar to AA sequence:KEGG_Orthology:K10884
note: Subunit of the telomeric Ku complex (Yku70p-Yku80p); involved in telomere length maintenance, structure and telomere position effect; required for localization of telomerase ribonucleoprotein to nucleus via interaction with the TLC1 guide RNA; relocates to sites of double-strand cleavage to promote nonhomologous end joining during DSB repair; GO_component: GO:0043564 - Ku70:Ku80 complex [Evidence IEA]; GO_component: GO:0043564 - Ku70:Ku80 complex [Evidence IDA] [PMID 8754818]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IEA,IEA]; GO_component: GO:0000790 - nuclear chromatin [Evidence TAS] [PMID 10367891]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 10638763]; GO_component: GO:0005724 - nuclear telomeric heterochromatin [Evidence TAS] [PMID 12080091]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004003 - ATP-dependent DNA helicase activity [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 12975323]; GO_function: GO:0003684 - damaged DNA binding [Evidence IEA]; GO_function: GO:0003684 - damaged DNA binding [Evidence TAS] [PMID 10367891]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0042162 - telomeric DNA binding [Evidence IEA]; GO_process: GO:0032508 - DNA duplex unwinding [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence IDA] [PMID 11553718]; GO_process: GO:0006342 - chromatin silencing [Evidence IDA,IMP] [PMID 9501103]; GO_process:…
codon start: 1
product: Yku70p
translation: MQQFDDASNIKSSRRCFIVTDNEDPSFGNSQQRTAAKTNAEELVNKNVIIEPAFLSHGDSKGEGSNFDMSQFWDSITFTKPMDDEENADVEPVPSSYLVSDLTLKTSLLSRRSPKRALFTNRIELAPGIEIGVKGYLTFSKQLFVKDRYVYTQGEEKQIVKSEVKITDDESVNTVSPDEIIRAYEFGDSYIYFTPEQVNQIRNLGRPLIRIIGFKSPSFVPPEYNKRHSMFVYPSDSKLTGSIRAFHSLYQCMRQKGKVAIAWAIIRSNSIPEPCALFPVNEEVETKGSLTVQVTPPGFQLVILPYADDIRARPMSTITEGKAERIYNSFNRNKLTINSPK
SIO_010081: AWJ20_3961
subclass of: SO_0000673
so part of: AWJ20_3961
location: complement(811717..812742)
location: region:811717-812742:-1
so has part: feature:811717-812742:-1:exon

XP_018733637.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:811717-812742:-1:exon

AWJ20_3962
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3962
so part of: sequence
location: complement(<812890..>813144)
location: region:812890-813144:-1
so has part: feature:812890-813144:-1:exon
subclass of: SO_0000010

30036041
type: Gene
SIO_000068: ncbigene

position:812890:-1
position: 812890
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:813144:-1
position: 813144
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:812890-813144:-1:exon

AWJ20_3962
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3962
product: ATP-dependent DNA helicase II subunit 1
transcript id: XM_018881004.1
SIO_010081: AWJ20_3962
subclass of: SO_0000673
so part of: AWJ20_3962
location: complement(<812890..>813144)
location: region:812890-813144:-1
so has part: feature:812890-813144:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:812890-813144:-1:exon

AWJ20_3962
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3962
codon start: 1
product: ATP-dependent DNA helicase II subunit 1
translation: MLELRHHESFDEPKSAVVLALEAVYEAIKSRLIVSPGDKSGIILYGTKKTSDAAFAWCNILMPLGAPSASQLRRVRRIIESKFH
SIO_010081: AWJ20_3962
subclass of: SO_0000673
so part of: AWJ20_3962
location: complement(812890..813144)
location: region:812890-813144:-1
so has part: feature:812890-813144:-1:exon

XP_018733638.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:812890-813144:-1:exon

AWJ20_3963
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: POL2
locus tag: AWJ20_3963
so part of: sequence
location: <814621..>820464
location: region:814621-820464:1
so has part: feature:814621-820464:1:exon
subclass of: SO_0000010

30036042
type: Gene
SIO_000068: ncbigene

position:814621:1
position: 814621
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:820464:1
position: 820464
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:814621-820464:1:exon

AWJ20_3963
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: POL2
locus tag: AWJ20_3963
product: DNA polymerase epsilon catalytic subunit
transcript id: XM_018881005.1
SIO_010081: AWJ20_3963
subclass of: SO_0000673
so part of: AWJ20_3963
location: <814621..>820464
location: region:814621-820464:1
so has part: feature:814621-820464:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:814621-820464:1:exon

AWJ20_3963
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: POL2
locus tag: AWJ20_3963
inference: similar to AA sequence:KEGG_Orthology:K02324
codon start: 1
product: DNA polymerase epsilon catalytic subunit
translation: MAYDIETTKAPLKFPDSAVDKIMMISYMIDGEGFLITNREIVSKDIEDFEYTPKPEYKGVFTIFNEETEKELLVRFFDHIKEEKPTVIATFNGDFFDWPFVEARAAFHGIDMYQEIGFQKDAEEEYKSTHCVHMDCFRWVKRDSYLPQGSQGLKAVTTAKLGYNPIEVDPEMMTPYAIEQPQVMAEYSVSDAVATYYLYMKYVHPFIFSLCTIIPLNPDEVLRKGTGTLCEMLLMVQAYKNGILLPHKHKDPAERFYDGHLIESETYVGGHVESLEAGVFRSDIPTDFNIDTTAIDELLKDLDSALNFTIEVEAKKKVSDITNYDEVKADVTAALIKLKTDPKRHERPSIYHVDVASMYPNIMTTNRLQPDSMISEEDCASCDFNRPGKTCDRRLPWAWRGEFFPTKKDEYLMIRNSLQNERFPGRFPDSPSRDFKDLSSTEQAAAIKKRITEYSKKVYHKVKVTETIEREAIICQRENPFYVNTVRDFRDRRYEFKGLQKVWKRKVDDIPASDVSGREEAKKMIVLYDSLQLAHKVILNSFYGYVMRKGSRWYSMEMAGVTCLTGATIIQMARSLVERIGRPLELDTDGIWCILPKTFPEDFTFNLTDGKKLPISYPCVMLNHLVHAKFTNHQYQILEDSTTLRYKTISDNSIFFEVDGPYKAMILPTSKEEDKNLKKRYAVFNPDGSLAELKGFEVKRRGELRLIKAFQSQVFSVFLKGTTLTECYAEVGKVANSWLDILDSKGKTLEEDDLIDLISENRSMSKTLQEYEGMKSTSICTARRLAEFLGSQMVKDKGLACKYIISKKPLGAAITDRAVPVAIFSAETSVKSHYLKKWLKDPGLDDYDPRSILDWDYYRERLASTIQKMVTIPAALQQVSNPVSRIQHPDWLLKRISTKNDKLKQKKLSSFFSTGSKPMTDASNKVNQLSGSILNNDRIHDIEDLTLGDARVTTAKIGKVAMKRKGNNSEAQSVALQEQFVSLSLEMPSPEEDYGEWLRYHKKKWAIQKQSRQNRQHLFGDSSRKIGVSGLIMQQTETAYSNSWQFLQFCPSEKGGEARAFVYINDKIQTIRINVGRRLYVNFRRATPSVYELPNCKVEKVNHTLPNGRTSDHLYRLHMSESAYETEMAKADSVLKHANIEGIYESQLGAEDRSLLELGCTTILDNSKPGLLGAGLEKGFSLEWLKPYNEVYLLNSKLNYLFLCHLVSHELQVFALVPSWSSQAFVFVLRPSRSAQGLPNLSKSYEEFLKESNVSMDPGSPIFNYQDQLVFEESYFDDISKLYKKLGQAITKLHSENATKAILCIQSPQAGRLKKLLRPINDFPNIEIRSSTMAIPQIGWQTAAAKRICKSYLSLRSWIGLYCRLSRYSDVPIGNLKGDDIRYLIDVIYARRLQQSNIVLWWSNSPIPDNGGSEKDSILPLIDPVSLPTVNNSGVYSKICIDLQVRNLSVNTILTAAIINEAEGADLAGSIVQGDGSSNSTPFVENAFSTPALAVLSNLVKEWWNQALANDETADDMVNCFISWVSSSNSFLYDQTLYYHVQNLSKKAFIQLVREFRKAGSQLVFADQKRFVLMTPKKILENTYSYANFLIKTIRSKPLFNFLDISLTEYWEVLVWMDDVNFCGKSCKSLSASGKDTVQTFFNWHIGRFLPPLLQTEFEESVLSFMEKYCDYRDQFQKKQQETLGVRQTQISSTALQRVSTDEDNNDSEIDNHFANGIFEAIRPQLVKRVKQLLKIYLDGKSNPDIAVQFEFPVLAGSRLQLSNPITQFVKSLCAVYGLSKELNLESRTLRRNLLSILGIKEFTEEASFKNPSASLIIDSVVCENCYFVCNLDLCRQDDLVRKDTVGNTVYYSWACENCGKDYNRIVLEERLIQNIQKLVTSYQIQDLKCEKCKKIKSDELSVRCECSGNWVETIPSSHVLKSIETYDRVAQFYELKFLQDVTSHLI
SIO_010081: AWJ20_3963
subclass of: SO_0000673
so part of: AWJ20_3963
location: 814621..820464
location: region:814621-820464:1
so has part: feature:814621-820464:1:exon

XP_018733639.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:814621-820464:1:exon

AWJ20_3964
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RAD14
locus tag: AWJ20_3964
so part of: sequence
location: complement(<820501..>820794)
location: region:820501-820794:-1
so has part: feature:820501-820794:-1:exon
subclass of: SO_0000010

30036043
type: Gene
SIO_000068: ncbigene

position:820501:-1
position: 820501
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:820794:-1
position: 820794
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:820501-820794:-1:exon

AWJ20_3964
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RAD14
locus tag: AWJ20_3964
product: Rad14p
transcript id: XM_018881006.1
SIO_010081: AWJ20_3964
subclass of: SO_0000673
so part of: AWJ20_3964
location: complement(<820501..>820794)
location: region:820501-820794:-1
so has part: feature:820501-820794:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:820501-820794:-1:exon

AWJ20_3964
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RAD14
locus tag: AWJ20_3964
inference: similar to AA sequence:KEGG_Orthology:K10847
note: Protein that recognizes and binds damaged DNA during NER; subunit of Nucleotide Excision Repair Factor 1 (NEF1); contains zinc finger motif; homolog of human XPA protein; NER stands for nucleotide excision repair; GO_component: GO:0000110 - nucleotide-excision repair factor 1 complex [Evidence IPI] [PMID 8621533]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9852079]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003684 - damaged DNA binding [Evidence IEA]; GO_function: GO:0003684 - damaged DNA binding [Evidence IDA] [PMID 23925126]; GO_function: GO:0003684 - damaged DNA binding [Evidence IDA] [PMID 8516285]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IDA] [PMID 8516285]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IEA]; GO_process: GO:0000715 - nucleotide-excision repair, DNA damage recognition [Evidence IDA] [PMID 8516285]
codon start: 1
product: Rad14p
translation: MMLYLRYQVEEYAFKKWGSPEGLDKEYERREAAKKQRKEKKFLDKLKDMRKKTRAEAITRHADERHEHEWSAPMDGLQGMVSRRCKVCGMTTEEIVF
SIO_010081: AWJ20_3964
subclass of: SO_0000673
so part of: AWJ20_3964
location: complement(820501..820794)
location: region:820501-820794:-1
so has part: feature:820501-820794:-1:exon

XP_018733640.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:820501-820794:-1:exon

AWJ20_3965
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ORC5
locus tag: AWJ20_3965
so part of: sequence
location: <822754..>823404
location: region:822754-823404:1
so has part: feature:822754-823404:1:exon
subclass of: SO_0000010

30036044
type: Gene
SIO_000068: ncbigene

position:822754:1
position: 822754
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:823404:1
position: 823404
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:822754-823404:1:exon

AWJ20_3965
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ORC5
locus tag: AWJ20_3965
product: origin recognition complex subunit 5
transcript id: XM_018881007.1
SIO_010081: AWJ20_3965
subclass of: SO_0000673
so part of: AWJ20_3965
location: <822754..>823404
location: region:822754-823404:1
so has part: feature:822754-823404:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:822754-823404:1:exon

AWJ20_3965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ORC5
locus tag: AWJ20_3965
inference: similar to AA sequence:KEGG_Orthology:K02607
note: Subunit of the origin recognition complex (ORC); ORC directs DNA replication by binding to replication origins and is also involved in transcriptional silencing; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IDA] [PMID 9554851]; GO_component: GO:0005664 - nuclear origin of replication recognition complex [Evidence IDA,IMP] [PMID 9372948]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 16824194]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 9335335]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0000808 - origin recognition complex [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IMP] [PMID 9038340]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 16824194]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IMP] [PMID 16716188]; GO_process: GO:0006270 - DNA replication initiation [Evidence IGI,IMP] [PMID 7579692]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IDA] [PMID 12897051]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IDA] [PMID 16824194]; GO_process: GO:0031938 - regulation of chromatin silencing at telomere [Evidence IMP] [PMID 16980387]
codon start: 1
product: origin recognition complex subunit 5
translation: MDTLVKMWPVFVDPILKGKYKISEFVRIYKENIYLFTGDAVVADRLVDLEAEDLIAMVKTRREIATQAKAYELPIQSKYVLCAAYLASYNPPRYDVRFFSKAKDARAKRRDTGRRKSLKINPRSLAAPAFDLERMLAILHSIIPTDEEEKNVRAGSHIDIGVQIATLTTLKLIIRTSNSDPLDSRTRWKVNASWTLVKRLADDINFPIEEFLLESE
SIO_010081: AWJ20_3965
subclass of: SO_0000673
so part of: AWJ20_3965
location: 822754..823404
location: region:822754-823404:1
so has part: feature:822754-823404:1:exon

XP_018733641.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:822754-823404:1:exon

AWJ20_3966
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: VPS27
locus tag: AWJ20_3966
so part of: sequence
location: complement(<823526..>825286)
location: region:823526-825286:-1
so has part: feature:823526-825286:-1:exon
subclass of: SO_0000010

30036045
type: Gene
SIO_000068: ncbigene

position:823526:-1
position: 823526
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:825286:-1
position: 825286
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:823526-825286:-1:exon

AWJ20_3966
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: VPS27
locus tag: AWJ20_3966
product: ESCRT-0 subunit protein VPS27
transcript id: XM_018881008.1
SIO_010081: AWJ20_3966
subclass of: SO_0000673
so part of: AWJ20_3966
location: complement(<823526..>825286)
location: region:823526-825286:-1
so has part: feature:823526-825286:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:823526-825286:-1:exon

AWJ20_3966
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: VPS27
locus tag: AWJ20_3966
inference: similar to AA sequence:KEGG_Orthology:K12182
note: Endosomal protein that forms a complex with Hse1p; required for recycling Golgi proteins, forming lumenal membranes and sorting ubiquitinated proteins destined for degradation; has Ubiquitin Interaction Motifs which bind ubiquitin (Ubi4p); GO_component: GO:0033565 - ESCRT-0 complex [Evidence IPI] [PMID 12055639]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 12055639]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 9702203]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 12055639]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 20150893]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0045324 - late endosome to vacuole transport [Evidence IMP] [PMID 12055639]; GO_process: GO:0045053 - protein retention in Golgi apparatus [Evidence IMP] [PMID 8649377]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP,IPI] [PMID 12055639]
codon start: 1
product: ESCRT-0 subunit protein VPS27
translation: MSWFSSVVSIDERIEKATSESLPSGEQDLALNLEICDLIRSKTVPPKDAMRSLKKRLNHKNPNVQLLTLHLIDICIKNGGSHFLTEIASREFMDSFVSVLQPSSGLVNRDVKELMLEYLQNWANAFEGQIQLVYVNKVYEKLKKDGFHFPSGAKISSSFIDSSAPPEWVDADECMECNTPFSFVNRKHHCRNCGGVYIQKHCNNYTTLPHYGINQPVRVCDSCFNKLRGSSSGGPSSRVHNSNDQVRSHTTSNNRDLSSVDDDNDSDLQRALKLSLEESQNPGLTKPSPNRAPTNHLVQNDDDDEDMKAAIAASLRDMENEGKAIPSGTDTTNPSNNLYQLAPPSVSIADVEPKSVENTVLSIVDDEFTSVDAEIIHRYVQIVESLQRNPSAFAIRDTKLELLHNNVLSLRPKLSKDLRRTVEKCDQLEDLHGKLTAIVRYYDKLLEDRFSYSMKKYGHMDEGNQYTSSVVSSQMPGGQYHQYQTGSGPVTYPEGNSPYYPPVQDSDPHYGVNTETYYQQQHDGPLPSEPPLPEGNAGYQGFYPALDERGNISQNQSIQDPDNQSSEPNYSKPGTKEEEEPILIEL
SIO_010081: AWJ20_3966
subclass of: SO_0000673
so part of: AWJ20_3966
location: complement(823526..825286)
location: region:823526-825286:-1
so has part: feature:823526-825286:-1:exon

XP_018733642.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:823526-825286:-1:exon

AWJ20_3967
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: IST1
locus tag: AWJ20_3967
so part of: sequence
location: <825831..>826754
location: region:825831-826754:1
so has part: feature:825831-826754:1:exon
subclass of: SO_0000010

30036046
type: Gene
SIO_000068: ncbigene

position:825831:1
position: 825831
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:826754:1
position: 826754
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:825831-826754:1:exon

AWJ20_3967
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: IST1
locus tag: AWJ20_3967
product: Ist1p
transcript id: XM_018881009.1
SIO_010081: AWJ20_3967
subclass of: SO_0000673
so part of: AWJ20_3967
location: join(<825831..825899,826146..>826754)
location: region:825831-826754:1
so has part: feature:825831-825899:1:exon
so has part: feature:826146-826754:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:825831-825899:1:exon

position:825899:1
position: 825899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:826146-826754:1:exon

position:826146:1
position: 826146
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

AWJ20_3967
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: IST1
locus tag: AWJ20_3967
inference: similar to AA sequence:KEGG_Orthology:K19476
note: Protein with positive role in the multivesicular body sorting pathway; functions and forms a complex with Did2p; recruitment to endosomes is mediated by the Vps2p-Vps24p subcomplex of ESCRT-III; also interacts with Vps4p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 18032584]; GO_component: GO:0005768 - endosome [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 14562095]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 18032584]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway [Evidence IGI] [PMID 18032584]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Ist1p
translation: MAVNRLRLIEQKETALAKQARRESRDCDPGLEEAVKTIIYSAQRTEVKELHQIREIFVHKFGKDFAQDSIDNLSNSIPEKVTKRLSTVPPSEELVTLYLAEIARAYHVPFSGLQLEGEDITEHDESGDEGPPSGRVPEEALSTGGSQTARVKVRRLSQVDKLPNPSAPKSPVSVSTPAPTTDNPHPVLRVSTSGASQKGANGKANSADEQELDALRNRFEALRRR
SIO_010081: AWJ20_3967
subclass of: SO_0000673
so part of: AWJ20_3967
location: join(825831..825899,826146..826754)
location: region:825831-826754:1
so has part: feature:825831-825899:1:exon
so has part: feature:826146-826754:1:exon

XP_018733643.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:825831-825899:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:826146-826754:1:exon

AWJ20_3968
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TAM41
locus tag: AWJ20_3968
so part of: sequence
location: complement(<826881..>827792)
location: region:826881-827792:-1
so has part: feature:826881-827792:-1:exon
subclass of: SO_0000010

30036047
type: Gene
SIO_000068: ncbigene

position:826881:-1
position: 826881
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:827792:-1
position: 827792
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:826881-827792:-1:exon

AWJ20_3968
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TAM41
locus tag: AWJ20_3968
product: Tam41p
transcript id: XM_018881010.1
SIO_010081: AWJ20_3968
subclass of: SO_0000673
so part of: AWJ20_3968
location: complement(<826881..>827792)
location: region:826881-827792:-1
so has part: feature:826881-827792:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:826881-827792:-1:exon

AWJ20_3968
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TAM41
locus tag: AWJ20_3968
inference: similar to AA sequence:KEGG_Orthology:K17807
note: Mitochondrial phosphatidate cytidylyltransferase (CDP-DAG synthase); required for cardiolipin biosynthesis; viability of null mutant is strain-dependent; mRNA is targeted to the bud; mutant displays defect in mitochondrial protein import, likely due to altered membrane lipid composition; GO_component: GO:0031314 - extrinsic component of mitochondrial inner membrane [Evidence IDA] [PMID 16790493]; GO_component: GO:0031314 - extrinsic component of mitochondrial inner membrane [Evidence IDA] [PMID 16943180]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 16790493]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 16943180]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14690591]; GO_function: GO:0004605 - phosphatidate cytidylyltransferase activity [Evidence IDA,IMP] [PMID 23623749]; GO_process: GO:0032049 - cardiolipin biosynthetic process [Evidence IMP] [PMID 19114592]; GO_process: GO:0032049 - cardiolipin biosynthetic process [Evidence IGI] [PMID 20485265]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Tam41p
translation: MKQYPEHYSSLRFLGSGAVSALQDYVGSGVYFNPFVELNGLKIKYGVVNIDTLLSDLQGWETLYLAGRLHKPVKILRDEPKVRFVNQANLISVLRTSLLLLPEKFNEFELYKMIAGISYMGDPRMQFGENPNKVHNIVSNQFLNFRKLYSPLMDDLPNLSISSGESQVVSDGNQKVEAVNLIQDMSPLKRGNMVFRLPSEFRSKIYARYASKLNSPELAMASKSNSVNKNDPSVKSVSTDFDRQIADDKDLSLEVARAIRYTVSWPSLTQSAKGLLTAGLVKSMKYSYEKISKYRLGKQAIIK
SIO_010081: AWJ20_3968
subclass of: SO_0000673
so part of: AWJ20_3968
location: complement(826881..827792)
location: region:826881-827792:-1
so has part: feature:826881-827792:-1:exon

XP_018733644.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:826881-827792:-1:exon

AWJ20_3969
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3969
so part of: sequence
location: <828540..>828628
location: region:828540-828628:1
so has part: feature:828540-828628:1:exon
subclass of: SO_0000663

30036048
type: Gene
SIO_000068: ncbigene

position:828540:1
position: 828540
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:828628:1
position: 828628
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:828540-828628:1:exon

AWJ20_3969
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_3969
product: tRNA-Phe
SIO_010081: AWJ20_3969
subclass of: SO_0000673
so part of: AWJ20_3969
location: <828540..>828628
location: region:828540-828628:1
so has part: feature:828540-828628:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:828540-828628:1:exon

AWJ20_3970
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: DCR2
locus tag: AWJ20_3970
so part of: sequence
location: complement(<832165..>833886)
location: region:832165-833886:-1
so has part: feature:832165-833886:-1:exon
subclass of: SO_0000010

30036050
type: Gene
SIO_000068: ncbigene

position:832165:-1
position: 832165
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:833886:-1
position: 833886
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:832165-833886:-1:exon

AWJ20_3970
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: DCR2
locus tag: AWJ20_3970
product: Dcr2p
transcript id: XM_018881012.1
SIO_010081: AWJ20_3970
subclass of: SO_0000673
so part of: AWJ20_3970
location: complement(<832165..>833886)
location: region:832165-833886:-1
so has part: feature:832165-833886:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:832165-833886:-1:exon

AWJ20_3970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: DCR2
locus tag: AWJ20_3970
note: Phosphoesterase; involved in downregulation of the unfolded protein response (UPR), at least in part via dephosphorylation of Ire1p; dosage-dependent positive regulator of the G1/S phase transition through control of the timing of START; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IMP,ISS] [PMID 15590836]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IDA,IMP] [PMID 17673172]; GO_function: GO:0042578 - phosphoric ester hydrolase activity [Evidence IDA] [PMID 16990850]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0030968 - endoplasmic reticulum unfolded protein response [Evidence IGI,IMP] [PMID 16990850]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA] [PMID 16990850]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA,IMP] [PMID 17673172]; GO_process: GO:0007089 - traversing start control point of mitotic cell cycle [Evidence IMP] [PMID 15590836]
codon start: 1
product: Dcr2p
translation: MALLPRFWVRQLLKLGISIFVLSLLIVFVDFYFNFLPTSFQTRLPLHQSTAVIVDLKVQSCLTVSGCAEPNGWYKIPKNLYLNTKWVRKGFVYVKRVEETELQDDHKVVLDLALAHSTEANGHGIPLYIVKDILGQATSEKEETEASRDAIRAIDDDEAAKHGWTLRDEDSGLWVKQGKYHRSESVTGVDVLFGKDSVDPRPNWSLKPGFLFRDSGKEAFASLTIRRGVENKPSKPVLRVNPSGKFKILQVADLHFSTGEGICRDTFPSDSAGNCLADPRTLDFIKLVLDQETPDFVVMTGDQIFGDTAPDAESALLKAVAPFIEREIPYAMVFGNHDAQGSLSKEDLMSIIATLPFSLSEAGPEDVDGIGNYVLQALSPKNDHPAISFYFLDSHSHVALPKGGSTYDHIKSNQLKFIENTSTKIKELQKDYTHIPLSMAFFHIPIPEYRKTNVNPVVGSHREPVMGPTNDEGTRDVLAKVGVSVVSVGHDHVNDYCMFDKPDREGETGIWLCYGGAVGEGGYAGYGGYVRRLRLFEIDTQSASIKSWKLTREQPELKLDEQTLVSNGHVSNE
SIO_010081: AWJ20_3970
subclass of: SO_0000673
so part of: AWJ20_3970
location: complement(832165..833886)
location: region:832165-833886:-1
so has part: feature:832165-833886:-1:exon

XP_018733645.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:832165-833886:-1:exon

AWJ20_3971
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: FCF1
locus tag: AWJ20_3971
so part of: sequence
location: complement(<834153..>834722)
location: region:834153-834722:-1
so has part: feature:834153-834722:-1:exon
subclass of: SO_0000010

30036051
type: Gene
SIO_000068: ncbigene

position:834153:-1
position: 834153
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:834722:-1
position: 834722
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:834153-834722:-1:exon

AWJ20_3971
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: FCF1
locus tag: AWJ20_3971
product: Fcf1p
transcript id: XM_018881013.1
SIO_010081: AWJ20_3971
subclass of: SO_0000673
so part of: AWJ20_3971
location: complement(<834153..>834722)
location: region:834153-834722:-1
so has part: feature:834153-834722:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:834153-834722:-1:exon

AWJ20_3971
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: FCF1
locus tag: AWJ20_3971
inference: similar to AA sequence:KEGG_Orthology:K14566
note: Putative PINc domain nuclease; required for early cleavages of 35S pre-rRNA and maturation of 18S rRNA; component of the SSU (small subunit) processome involved in 40S ribosomal subunit biogenesis; copurifies with Faf1p; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 16762320]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 16769905]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA,IPI] [PMID 16769905]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16762320]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16769905]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16762320]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16769905]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16762320]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16769905]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]
codon start: 1
product: Fcf1p
translation: MGKAKKTRKFAQVKRVITSKDQRIKKNQEQQKPVDQDKELVKEIPQVSSALFFQYNEAIKPPYQVLVDTNFINFSIQKKLDLVRGMMDTLYARCIPIVTDCVMAELEKLGPKYRIALRMARDPRVQRLTCSHKGTYADDCLVHRIMQHKCYIVATNDADLKRRIRKVPGVPLMSVGAHSYVIERLPDAF
SIO_010081: AWJ20_3971
subclass of: SO_0000673
so part of: AWJ20_3971
location: complement(834153..834722)
location: region:834153-834722:-1
so has part: feature:834153-834722:-1:exon

XP_018733646.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:834153-834722:-1:exon

AWJ20_3972
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PEP5
locus tag: AWJ20_3972
so part of: sequence
location: <835067..>837961
location: region:835067-837961:1
so has part: feature:835067-837961:1:exon
subclass of: SO_0000010

30036052
type: Gene
SIO_000068: ncbigene

position:835067:1
position: 835067
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:837961:1
position: 837961
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:835067-837961:1:exon

AWJ20_3972
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PEP5
locus tag: AWJ20_3972
product: tethering complex subunit PEP5
transcript id: XM_018881014.1
SIO_010081: AWJ20_3972
subclass of: SO_0000673
so part of: AWJ20_3972
location: <835067..>837961
location: region:835067-837961:1
so has part: feature:835067-837961:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:835067-837961:1:exon

AWJ20_3972
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PEP5
locus tag: AWJ20_3972
codon start: 1
product: tethering complex subunit PEP5
translation: MNVTISTKITNLQDPDVTAVAPGRDTIFLATSKGVIKEFDSSFRLVQSFVAYSEPDWNITHLVFLEGTSLLMTVASKTNHPLTAHLWNLDKIDKQSNGPHCHTTITVMNGSNTFPLSAFCISSDHSILGFGYADGTVILVRGDIVRDRGSRQRVVYRSNTPVTGLEFYEGDENGSVVLMIATVSQILTVPTTGRNSGKPDIILDKKGAALGCVTMVKGYRTQKDRLAVARDGEIAYYTPVMRGASIALDLPKKSIYSFGHYFLVTSILSADNSSVEASNSFSNFVGADTTRIFIIDTLNNFIAYTEQMAAGIKFIFTQWDKLHVLGSDGILYVFKEKDIDTRLAILKTNNLYDIAIELSTKMDLERNKILRLEREYADFLYKGDQSAEALEHYITSIELGQTSEVILKYRDSQKIDYLTRYLEALHSEGVATKQHTTLLFNSYAKLNNLEKLTQFVEGSQNKESIAIDYETAIRICCQAGYFTLAVYLAQRSGDTDLAVQIKLRDLKDYKGCLEYIRSLDVTDALRILIQFSRELLDTFPVETTALLVSLFTGKFSPTETELDINARREIQPQTFEGSSDSITAPVLQSYRALVNYMSNVGSNAPVGSDDASHVNGRSIPTYQPPRPRLIFSSFIDHPNEFVIFLEECLESYDKFEANEKDRADLLSTLFEMYLTLSRKATDHDTRHGWESKARSLAMTSKTHIDHNTILLLSHLASYHDGKLLAWDAREGYEVDLFRACIASGNVQEAIEILHKYGEHEHELFPLALNFFISSPSVLEEAGEEFDYVLKKIKEEQIMTPLQVIQTISVNSVATIGHIRQYLVDIIDAEKQDIDRHTKLAESYRSETRSKQEQISKILNDPSIVQYTVCASCGSALDLPVVHFSCKHSYHQRCLANNLIGSRSIGGSEEPVCPRCLPELENIRAIRRSHEDVADRNDLFEIALHGSDNKFKVVTDFISRGALTG
SIO_010081: AWJ20_3972
subclass of: SO_0000673
so part of: AWJ20_3972
location: 835067..837961
location: region:835067-837961:1
so has part: feature:835067-837961:1:exon

XP_018733647.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:835067-837961:1:exon

AWJ20_3973
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3973
so part of: sequence
location: complement(<838154..>840124)
location: region:838154-840124:-1
so has part: feature:838154-840124:-1:exon
subclass of: SO_0000010

30036053
type: Gene
SIO_000068: ncbigene

position:838154:-1
position: 838154
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:840124:-1
position: 840124
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:838154-840124:-1:exon

AWJ20_3973
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3973
product: arginine--tRNA ligase
transcript id: XM_018881015.1
SIO_010081: AWJ20_3973
subclass of: SO_0000673
so part of: AWJ20_3973
location: complement(<838154..>840124)
location: region:838154-840124:-1
so has part: feature:838154-840124:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:838154-840124:-1:exon

AWJ20_3973
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3973
inference: similar to AA sequence:KEGG_Orthology:K01887
note: Arginyl-tRNA synthetase; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YDR341C has a paralog, MSR1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004814 - arginine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004814 - arginine-tRNA ligase activity [Evidence IDA] [PMID 9622124]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006420 - arginyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006420 - arginyl-tRNA aminoacylation [Evidence IDA] [PMID 9622124]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]
codon start: 1
product: arginine--tRNA ligase
translation: MSELHTLTERLNSLGLGSALTPFPGSDPVNNPFDLFRSYISEELSKITGVSRDLVYPALEWTNTPDRGDLVIPIPRLRVKGTPPIELAKKWAAEFPENSYLKAVVANGPFIQFFFNPSVLFNLVLKDILTLNDDFGNSTIGKGKRTVVEFSSPNIAKPFHAGHLRSTIIGGFISNLHEKLGYEVIRLNYLGDWGKQFGILAVGFKRYGSEQELESNPINHLFNVYVRINKDIEAEKEASTNAYYEDHPNEKPQEKVEVEEKKPQEIKKGDKKPELATPAVPGVPAFVPTSATDDEARSYFKKMEDGDEEALALWKKFRDLSIVKYKDTYKRLNIEYDSYSGESQVSKEVMQKATKLFEEKNLLTEDKGAKLIDLTPYNKKLGKAIVQKKDGTSLYLTRDVGAAMDRYEKYKFDKMIYVIASQQDLHTAQFFKILDLMGFEWASRLQHVNFGMVQGMSTRKGTVVFLDNILEETKDAMHDVMKKNEAKYSQVENPDEIADLVGIAAVMIQDMQAKRINNYAFNWSRMLSFEGDTGAYLQYAHSRLCSIERNAESLVDLSTLHEADFSLLKEPIAEELVRILAQYPDILLASLRSLEPSTVVTYLFKLTHCVSSCYDILWVAGQTPELAKARLALYSSARRVLSNGMELLNLTPVKRM
SIO_010081: AWJ20_3973
subclass of: SO_0000673
so part of: AWJ20_3973
location: complement(838154..840124)
location: region:838154-840124:-1
so has part: feature:838154-840124:-1:exon

XP_018733648.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:838154-840124:-1:exon

AWJ20_3974
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3974
so part of: sequence
location: <840468..>841616
location: region:840468-841616:1
so has part: feature:840468-841616:1:exon
subclass of: SO_0000010

30036054
type: Gene
SIO_000068: ncbigene

position:840468:1
position: 840468
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:841616:1
position: 841616
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840468-841616:1:exon

AWJ20_3974
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3974
product: hypothetical protein
transcript id: XM_018881016.1
SIO_010081: AWJ20_3974
subclass of: SO_0000673
so part of: AWJ20_3974
location: <840468..>841616
location: region:840468-841616:1
so has part: feature:840468-841616:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:840468-841616:1:exon

AWJ20_3974
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3974
codon start: 1
product: hypothetical protein
translation: MSILEILAWIVLAKRDKCEAGGSFLDRITFALALHFYKFCTFVDCLIHGLSRTEVLISRVREPQKTHVLKQLIWNVWAHSQLQDLQGEWSNEQELPLVGKTDNIDSSFVGLLTDVPQSIGLVYEDLLERAANPTTWSDGKDRYIEIYNSVFQATNEAEIDIEESVILSSGLRHRRKTGRALSANKTTEEAVPAPKPHNRGNLDWVALGFQGSDPATDFRGSGKFGEECFYRFCTVTNPKVVLRTIMLQSGSFNSGPVVLSKPWYSVALVSIHLSQFILTLIQRDTTRLAFYRGVLLSLSLESLNGANKLVDIEDCIYTLHSTLLTKFHKTWMEAVAKGDITSVMDTEPFLENFKTTMTEWLWLEHSWAVDPEDTYEILEFSE
SIO_010081: AWJ20_3974
subclass of: SO_0000673
so part of: AWJ20_3974
location: 840468..841616
location: region:840468-841616:1
so has part: feature:840468-841616:1:exon

XP_018733649.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:840468-841616:1:exon

AWJ20_3975
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3975
so part of: sequence
location: complement(<841645..>843585)
location: region:841645-843585:-1
so has part: feature:841645-843585:-1:exon
subclass of: SO_0000010

30036055
type: Gene
SIO_000068: ncbigene

position:841645:-1
position: 841645
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:843585:-1
position: 843585
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:841645-843585:-1:exon

AWJ20_3975
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3975
product: gephyrin
transcript id: XM_018881017.1
SIO_010081: AWJ20_3975
subclass of: SO_0000673
so part of: AWJ20_3975
location: complement(<841645..>843585)
location: region:841645-843585:-1
so has part: feature:841645-843585:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:841645-843585:-1:exon

AWJ20_3975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3975
inference: similar to AA sequence:KEGG_Orthology:K15376
codon start: 1
product: gephyrin
translation: MFRVHLIIVSDTCSKDPSKDRVIPAVSEIINLRSDEYVLKGTSIIPDEKTFIQSEISSVARDSKIDLIITSGGTGFGVRDVTPEAVAPLLDRQAPGLVQMMIQESLKITPMAALSRPVAGVMGKCIVITLPGSPKGACENLTSIFPILSHALSLACGSSATPHGVSQKLQNVNSSHDVGHHKHNHPHNGACEHSHKGPKFYNRSNDLSRPVTERARQSPYPMISVDEALDVINATVPTPRVEERNIDQTLIGYVIAENIYSTVNVPGYRASIVDGYAVGNYSFPNTYDVSDISHANSLASSTRLESNTIVRVTTGAPVPNGTFAVIPVESTYVESSRVDSNGKEEEARVFIDVDEIVKEGDNIREPGSDVEINDLILSEGTEITAVGGEIGLLSSVGLRTVNVYRKPIIGIMSTGDEVVDPSSCSSLIGGQVWDSNRPSLITACKGNNFEVVDLGIVEDVANRLESSIRQAYSKRGVDIIITTGGVSMGELDLLKPTIERALNGIIHFGRVAMKPGKPTTFGSFGNKLIFGLPGNPASALVTFHLFVLPCLRLWSGRSKNRYKLPTVKVKLGEAFYLDPRPEYQRAKILQNDDGCLIAYSTGRQRSSRVGSMYTANGLLCLPSSTNQSSPILPEGNVIEAIMIGPL
SIO_010081: AWJ20_3975
subclass of: SO_0000673
so part of: AWJ20_3975
location: complement(841645..843585)
location: region:841645-843585:-1
so has part: feature:841645-843585:-1:exon

XP_018733650.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:841645-843585:-1:exon

AWJ20_3976
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PUT4
locus tag: AWJ20_3976
so part of: sequence
location: <844164..>845768
location: region:844164-845768:1
so has part: feature:844164-845768:1:exon
subclass of: SO_0000010

30036056
type: Gene
SIO_000068: ncbigene

position:844164:1
position: 844164
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:845768:1
position: 845768
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:844164-845768:1:exon

AWJ20_3976
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PUT4
locus tag: AWJ20_3976
product: proline permease PUT4
transcript id: XM_018881018.1
SIO_010081: AWJ20_3976
subclass of: SO_0000673
so part of: AWJ20_3976
location: <844164..>845768
location: region:844164-845768:1
so has part: feature:844164-845768:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:844164-845768:1:exon

AWJ20_3976
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PUT4
locus tag: AWJ20_3976
inference: similar to AA sequence:KEGG_Orthology:K16261
note: Proline permease; required for high-affinity transport of proline; also transports the toxic proline analog azetidine-2-carboxylate (AzC); PUT4 transcription is repressed in ammonia-grown cells; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 10654085]; GO_function: GO:0015193 - L-proline transmembrane transporter activity [Evidence IGI] [PMID 14968425]; GO_function: GO:0015193 - L-proline transmembrane transporter activity [Evidence IMP] [PMID 3552672]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015175 - neutral amino acid transmembrane transporter activity [Evidence IDA] [PMID 10654085]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IDA,IGI] [PMID 8455553]; GO_process: GO:0015804 - neutral amino acid transport [Evidence IDA] [PMID 10654085]; GO_process: GO:0015824 - proline transport [Evidence IDA] [PMID 10654085]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]
codon start: 1
product: proline permease PUT4
translation: MKNTENKVATFEYNVGIEEGSVEVVEVFKEEQRLEKRLEQRHIQMIALVGVIGTGLFLSSGSSLQKAGPLGMLLSYLTIAIIVSLNQLAMAETAALMPSTASSIRQAQHFIDPAMSFAYGWLQMWSIIVPSELVATAVIVSYWTDLSSGIWLTVFIVLSVLSNCWSVRVYGELEFFFAILKILLILGLILAGLVLDLGGVPGQPRLGFHYWKDPGVFASFMKPGSAGKAIGFFSVLNSAVYSFGGVQNIAYLSGETKNPRRNIPKAAKRILYRVVSFYMITLFIMSLIVPYNDPRISNGSGNASGSPFVVAFEQAGIKALPSIVNAIVLTSAWSAANTGLVAGSRTLFSLANNGQAPKIFLRTNKRGLPWVGTIVTALFMPLSYMTLGSSSSIVFGYLVNVTSSILLINWILISAIHYRLNRALEVQGYSRSDLPFHIRGGKALGLISGISSSLLLLIGGFTIFIKWDTADFVSAYVTIPLFVGFFTFWKLFKKTKWIRYEDIDLKSLFQDVELNPEPPEEPLRGWKRLQFLWA
SIO_010081: AWJ20_3976
subclass of: SO_0000673
so part of: AWJ20_3976
location: 844164..845768
location: region:844164-845768:1
so has part: feature:844164-845768:1:exon

XP_018733651.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:844164-845768:1:exon

AWJ20_3977
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SEN2
locus tag: AWJ20_3977
so part of: sequence
location: <846185..>847399
location: region:846185-847399:1
so has part: feature:846185-847399:1:exon
subclass of: SO_0000010

30036057
type: Gene
SIO_000068: ncbigene

position:846185:1
position: 846185
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:847399:1
position: 847399
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:846185-847399:1:exon

AWJ20_3977
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SEN2
locus tag: AWJ20_3977
product: Sen2p
transcript id: XM_018881019.1
SIO_010081: AWJ20_3977
subclass of: SO_0000673
so part of: AWJ20_3977
location: <846185..>847399
location: region:846185-847399:1
so has part: feature:846185-847399:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:846185-847399:1:exon

AWJ20_3977
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SEN2
locus tag: AWJ20_3977
inference: similar to AA sequence:KEGG_Orthology:K15322
note: Subunit of the tRNA splicing endonuclease; tRNA splicing endonuclease is composed of Sen2p, Sen15p, Sen34p, and Sen54p; Sen2p contains the active site for tRNA 5' splice site cleavage and has similarity to Sen34p and to Archaeal tRNA splicing endonuclease; GO_component: GO:0012505 - endomembrane system [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA,IMP] [PMID 12925762]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0000214 - tRNA-intron endonuclease complex [Evidence IEA]; GO_component: GO:0000214 - tRNA-intron endonuclease complex [Evidence IDA] [PMID 9200603]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000213 - tRNA-intron endonuclease activity [Evidence IEA]; GO_function: GO:0000213 - tRNA-intron endonuclease activity [Evidence IMP] [PMID 2182322]; GO_function: GO:0000213 - tRNA-intron endonuclease activity [Evidence IDA] [PMID 9200603]; GO_process: GO:0090501 - RNA phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0006388 - tRNA splicing, via endonucleolytic cleavage and ligation [Evidence IEA]; GO_process: GO:0000379 - tRNA-type intron splice site recognition and cleavage [Evidence IMP] [PMID 2182322]; GO_process: GO:0000379 - tRNA-type intron splice site recogniti…
codon start: 1
product: Sen2p
translation: MKKSLNQLYGSPLPLVVRPLPPIIPHNPLSWIFWLWEYWFPEPEYNLYDGILHALVLPSETTFYVRIDNGSDINSLWSMGFFGKGTLSRSEPSWYTRTARRLGLQGGEQMTSEEVTAARREERKKFKMMRAQAEAEELARRKKLDEMKEVWAGQDSDSVSTLVDEESKLTSTGVASEAGDSKHELTRTLEESQPAQAAAVLVESSASPEVSGNHATVIRFEDQSIIDSNNKLIQQEYLQLMPQEAFFLSYGLGVLRITDHVTGKPLTSEELLTRFVSANPRFLSQYAVYHHYRSLGWCVRSGVKFGSELLLYKRGPPFSHAEFCIRILTSPGDEQHDWWWNTSIGRVVGGVKKGLVFCYVQGNDTENTAKILDASEGYSIKDILGSYQIREVVYRRWIATRNRD
SIO_010081: AWJ20_3977
subclass of: SO_0000673
so part of: AWJ20_3977
location: 846185..847399
location: region:846185-847399:1
so has part: feature:846185-847399:1:exon

XP_018733652.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:846185-847399:1:exon

AWJ20_3978
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3978
so part of: sequence
location: <850123..>850623
location: region:850123-850623:1
so has part: feature:850123-850623:1:exon
subclass of: SO_0000010

30036058
type: Gene
SIO_000068: ncbigene

position:850123:1
position: 850123
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:850623:1
position: 850623
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:850123-850623:1:exon

AWJ20_3978
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3978
product: hypothetical protein
transcript id: XM_018881020.1
SIO_010081: AWJ20_3978
subclass of: SO_0000673
so part of: AWJ20_3978
location: <850123..>850623
location: region:850123-850623:1
so has part: feature:850123-850623:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:850123-850623:1:exon

AWJ20_3978
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3978
codon start: 1
product: hypothetical protein
translation: MNKKRATVYFVSTLAVFAGIEAGCIIPFTRLYEKGIEWPTTLVGIIAAVLLGVGLLPPYWEIYKRGGQVVGINFIFLTIDSGGALFSTLSLVFQKGSLDILGCVLYIVILVLEGGIFLSQAIWLLRTRIVRRAASEERVCCDEVGSGLKGDKLVLSEAIPDENEIV
SIO_010081: AWJ20_3978
subclass of: SO_0000673
so part of: AWJ20_3978
location: 850123..850623
location: region:850123-850623:1
so has part: feature:850123-850623:1:exon

XP_018733653.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:850123-850623:1:exon

AWJ20_3979
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3979
so part of: sequence
location: complement(<850722..>851177)
location: region:850722-851177:-1
so has part: feature:850722-851177:-1:exon
subclass of: SO_0000010

30036059
type: Gene
SIO_000068: ncbigene

position:850722:-1
position: 850722
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:851177:-1
position: 851177
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:850722-851177:-1:exon

AWJ20_3979
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3979
product: hypothetical protein
transcript id: XM_018881021.1
SIO_010081: AWJ20_3979
subclass of: SO_0000673
so part of: AWJ20_3979
location: complement(<850722..>851177)
location: region:850722-851177:-1
so has part: feature:850722-851177:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:850722-851177:-1:exon

AWJ20_3979
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3979
codon start: 1
product: hypothetical protein
translation: MSPSVLARVISGKLELDVKSLKVNPAKLENFKRHKVKDVDYPAVIRGDDKDLVLGTVVYNLSEEEIIKLDMFEGEEYERLVLDVLDIAESRQVKAGVYVWVDSQDRLLEEEWDFGYFVNHKMENWISDELKEMDKEAEARGGRFWDTTQCI
SIO_010081: AWJ20_3979
subclass of: SO_0000673
so part of: AWJ20_3979
location: complement(850722..851177)
location: region:850722-851177:-1
so has part: feature:850722-851177:-1:exon

XP_018733654.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:850722-851177:-1:exon

AWJ20_3980
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3980
so part of: sequence
location: complement(<852101..>852478)
location: region:852101-852478:-1
so has part: feature:852101-852478:-1:exon
subclass of: SO_0000010

30036061
type: Gene
SIO_000068: ncbigene

position:852101:-1
position: 852101
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:852478:-1
position: 852478
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:852101-852478:-1:exon

AWJ20_3980
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3980
product: splicing factor, SYF2 family
transcript id: XM_018881023.1
SIO_010081: AWJ20_3980
subclass of: SO_0000673
so part of: AWJ20_3980
location: complement(<852101..>852478)
location: region:852101-852478:-1
so has part: feature:852101-852478:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:852101-852478:-1:exon

AWJ20_3980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3980
codon start: 1
product: splicing factor, SYF2 family
translation: MSKSSSSPDLKLSREERFKSLRKRANESLKANRSEVYEEHKRSKVDEKLQARLQRQREAAEFELAELESKETGEDFERKRVWDWTIEESEKWDQKKNKVEKSIESSVFSGKFAISRIVLVQILGS
SIO_010081: AWJ20_3980
subclass of: SO_0000673
so part of: AWJ20_3980
location: complement(852101..852478)
location: region:852101-852478:-1
so has part: feature:852101-852478:-1:exon

XP_018733655.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:852101-852478:-1:exon

AWJ20_3981
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3981
so part of: sequence
location: <855167..>856948
location: region:855167-856948:1
so has part: feature:855167-856948:1:exon
subclass of: SO_0000010

30036062
type: Gene
SIO_000068: ncbigene

position:855167:1
position: 855167
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:856948:1
position: 856948
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:855167-856948:1:exon

AWJ20_3981
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3981
product: hypothetical protein
transcript id: XM_018881024.1
SIO_010081: AWJ20_3981
subclass of: SO_0000673
so part of: AWJ20_3981
location: <855167..>856948
location: region:855167-856948:1
so has part: feature:855167-856948:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:855167-856948:1:exon

AWJ20_3981
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3981
inference: similar to AA sequence:KEGG_Orthology:K12864
codon start: 1
product: hypothetical protein
translation: MSSTDQIFKVSIGILRALKRVDLGSGANSRQVASGPAPSDESTKTDGFEDDPRFYGNDLESSLQGQVLDYIELKEKAIGQLAGADSFHNRSLLKKVVARFVGARETNETLRVKHPDEPLQFLESEEELFERLKDLTILADVGLYREMSEMDDLKDGLLSLLFHENSDIVVQLFVVLLELLQPDSETDVSSIHNFYRILINGGLLKGIEQYLIRLQKPNQEAQEDDVLGRRVEEEKATLDLLSSLAEIDEFILNFSNCSDLFDSLITRIQNKEPGDLVSENRLSCALIVQSLLSNGPLAKVLITASSVESILNVTSTYIYKDPEPYETDKLFSECVFDVLSSISVNSRDDFLNFEGPELMIKLLRDANWAVGPALRVLKTSVRDDDGRIANLIIESGGLKHLFKLLYKGSKGEVDDVISVLANLLHWLPLESPGRIRVIGKLIEKDYRAVRLLLRKRRKFCNLIGELRSRLSDSALEEKMEIITELEEAGVDKQNRIDIILAWLTVESTRIGRDVIKLLSSEPGNLFQSLRSYISELNLIIRAETEEPAMPKDELEFLRMEEEMVSSLVSQMKHSLQPGYVNLQQGSYKKIISQ
SIO_010081: AWJ20_3981
subclass of: SO_0000673
so part of: AWJ20_3981
location: 855167..856948
location: region:855167-856948:1
so has part: feature:855167-856948:1:exon

XP_018733656.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:855167-856948:1:exon

AWJ20_3982
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SNF5
locus tag: AWJ20_3982
so part of: sequence
location: <857672..>860077
location: region:857672-860077:1
so has part: feature:857672-860077:1:exon
subclass of: SO_0000010

30036063
type: Gene
SIO_000068: ncbigene

position:857672:1
position: 857672
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:860077:1
position: 860077
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:857672-860077:1:exon

AWJ20_3982
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SNF5
locus tag: AWJ20_3982
product: Snf5p
transcript id: XM_018881025.1
SIO_010081: AWJ20_3982
subclass of: SO_0000673
so part of: AWJ20_3982
location: <857672..>860077
location: region:857672-860077:1
so has part: feature:857672-860077:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:857672-860077:1:exon

AWJ20_3982
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SNF5
locus tag: AWJ20_3982
inference: similar to AA sequence:KEGG_Orthology:K11648
note: Subunit of the SWI/SNF chromatin remodeling complex; involved in transcriptional regulation; functions interdependently in transcriptional activation with Snf2p and Snf6p; relocates to the cytosol under hypoxic conditions; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 18644858]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 8016655]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 8127913]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA,IMP] [PMID 8159677]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0000228 - nuclear chromosome [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 2233708]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IPI] [PMID 11865042]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IMP,IPI] [PMID 14580348]; GO_process: GO:0000436 - carbon catabolite activation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 14580348]; GO_process: GO:0006338 - chromatin remodeling [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IGI,IMP] [PMID 1459453]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IMP] [PMID 16024655]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 1339306]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 1901413]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 3542227]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evide…
codon start: 1
product: Snf5p
translation: MSFPFEQQYNQFMVDESSGTQFNSDNGGSANMLISQVPGNTSNQQLMQQSSQPSQQQQFRNSFQFQGQPGSQMAGPRQNQGPAAVEQTRNVSMNQGQFHVNTPQSQLQPQSSQGPVNQAKYAQFLQQQLQHQQHQTPALAGQADGLQTPPSAMVRGSQTNQNAMVSGANPGNVQFQMSQYAPNTSGPQNQRINLGQSGSLGTKFAGSSALPGNPGDSAPGGPVLSASGGPNAAGVHGIHPVPSNIGAPVVPITGHQPSDRSNIPPRPALPNEILSAVKELPNSTLEEKTLIELLTKDAEQELIFAKQEQRHAGLIYRKQVEYDYYDQVRQLRQVQPSAIFGDGYSGYGNSWTGSRMNLIYPRDRKRGKRESSELFLSMEQLEYIASIPELLAPIRLDIDLDKYRLRDTFTWNLNEKLISVDLFAQNLAEDYNIPLSYAPLIANNINEVLNDFHPHAFVEAAEDQDQASSGLHSSSATGEESSGTVITSVNTSTTSSNPAGDVTVTTTTNDGISENLTPNGYATNPTLSNRNDDMRITIKLDITVGQHNLVDQFEWDLNCMDNNPEQFAEAMCRDLSLSGEFATAIAHAIREQTQLFTKTLFLVGHQFDGRPIEDDDIVRELCPPVTSDAFLRNTSFIKDFSPVLFEIPHVELDRQDKDRDRDSRRKRRQGRAGRRGGPTLPDLRETVRTFRTPVYSSLLPGGIDKVLELVRKQATKAEESDDDDDTPRPVTVGRRGRPPAHAQLSGVSTFRASPAALPSSSSRMASPQFRYHQQIQSVEDHYLVKLRIPPRIRDEVNRISL
SIO_010081: AWJ20_3982
subclass of: SO_0000673
so part of: AWJ20_3982
location: 857672..860077
location: region:857672-860077:1
so has part: feature:857672-860077:1:exon

XP_018733657.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:857672-860077:1:exon

AWJ20_3983
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: HTS1
locus tag: AWJ20_3983
so part of: sequence
location: complement(<860200..>861897)
location: region:860200-861897:-1
so has part: feature:860200-861897:-1:exon
subclass of: SO_0000010

30036064
type: Gene
SIO_000068: ncbigene

position:860200:-1
position: 860200
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:861897:-1
position: 861897
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:860200-861897:-1:exon

AWJ20_3983
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: HTS1
locus tag: AWJ20_3983
product: histidine--tRNA ligase
transcript id: XM_018881026.1
SIO_010081: AWJ20_3983
subclass of: SO_0000673
so part of: AWJ20_3983
location: complement(<860200..>861897)
location: region:860200-861897:-1
so has part: feature:860200-861897:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:860200-861897:-1:exon

AWJ20_3983
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: HTS1
locus tag: AWJ20_3983
inference: similar to AA sequence:KEGG_Orthology:K01892
note: Cytoplasmic and mitochondrial histidine tRNA synthetase; efficient mitochondrial localization requires both a presequence and an amino-terminal sequence; mutations in human ortholog HARS2 are associated with Perrault syndrome; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IMP] [PMID 3521891]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 3521891]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IDA] [PMID 16741232]; GO_function: GO:0004821 - histidine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006427 - histidyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006427 - histidyl-tRNA aminoacylation [Evidence IMP] [PMID 1459448]; GO_process: GO:0006427 - histidyl-tRNA aminoacylation [Evidence IDA] [PMID 16741232]; GO_process: GO:0032543 - mitochondrial translation [Evidence IGI] [PMID 16777356]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]
codon start: 1
product: histidine--tRNA ligase
translation: MRSFNRINSIRPYFESGLKSSITSASKVLAAYQMSTESTAPVETAVPAKVRAPKAPAAPQFTLKTPKGTKDWADKDMTIRSAIFETITKVFKRHGGVTIDTPVFELREILSGKYGEDSKLIYNLEDQGGELTSLRYDLTVPFARFVAMNGIQNIKRYHIAKVYRRDQPAMTKGRMREFYQCDFDIAGSYENMVADSEILSIAAEGLTALGIEDFTIKVNHRKILDGIFQHCGVKEQDVRKVSSAVDKLDKAPWSEVKKEMVVEKGQPEEVADRIGEYVLIKGTISDVINKLKADSALSSNASAAQGIADMETALPYLEAFGVTKHISFDLSLARGLDYYTGLIYEAVTAASAPPEPSSKEAQSSNANKKSKKAKKLDDDDDNSENVGVGSILAGGRYDNLVGMFAGTSKKNASIPCVGVSFGVERLFSLIKARPGLYDNARSTSTQVFLMAFGGGPTWTGFLNERLSVAKLLWDGGVEAEFMYKTKPKTPKQFEAAEKSGCPFAVILGQEEYPKGIVKVKELGMGSDADQGTDVPLEQLVDFVKAKIAARNNGIDSALQLLRLDN
SIO_010081: AWJ20_3983
subclass of: SO_0000673
so part of: AWJ20_3983
location: complement(860200..861897)
location: region:860200-861897:-1
so has part: feature:860200-861897:-1:exon

XP_018733658.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:860200-861897:-1:exon

AWJ20_3984
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TFA1
locus tag: AWJ20_3984
so part of: sequence
location: <862339..>863472
location: region:862339-863472:1
so has part: feature:862339-863472:1:exon
subclass of: SO_0000010

30036065
type: Gene
SIO_000068: ncbigene

position:862339:1
position: 862339
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:863472:1
position: 863472
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:862339-863472:1:exon

AWJ20_3984
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TFA1
locus tag: AWJ20_3984
product: Tfa1p
transcript id: XM_018881027.1
SIO_010081: AWJ20_3984
subclass of: SO_0000673
so part of: AWJ20_3984
location: <862339..>863472
location: region:862339-863472:1
so has part: feature:862339-863472:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:862339-863472:1:exon

AWJ20_3984
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TFA1
locus tag: AWJ20_3984
inference: similar to AA sequence:KEGG_Orthology:K03136
note: TFIIE large subunit; involved in recruitment of RNA polymerase II to the promoter, activation of TFIIH, and promoter opening; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005673 - transcription factor TFIIE complex [Evidence IDA] [PMID 1429681]; GO_component: GO:0005673 - transcription factor TFIIE complex [Evidence IDA] [PMID 7961670]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IPI] [PMID 11779853]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IDA] [PMID 8702741]; GO_function: GO:0001097 - TFIIH-class transcription factor binding [Evidence IDA] [PMID 8702741]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 9271406]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 1331084]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 1429681]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 7961670]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9188494]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9271406]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0001113 - transcriptional open complex formation at RNA polymerase II promoter [Evidence IDA,IGI] [PMID 10973956]
codon start: 1
product: Tfa1p
translation: MDALLIHGVLTDDELWHMLGINKKELRALCAKLKENHLLTDHVQREEGPAQRPITKTYYYIHYTETIDAIKWKMHSIVKKLKEEVGAESQPQGYVCDTCKSRYATIDVIGNFNSDRGGFVCDVCDSLLREDDSSAESQAQQEKLGRLMSQIDPIIDALRQIDEVHIPENTFQSSLAHALPAPSSTGPTTATTTSSAIKFAKSANQGGVNGTTSLQVNITSDKESAEIERKNREERARLAEENALPTWHLESTVGKSLYDSTNSSATSGDKMDANAPILSDRSTIKLEDSDKPATSADNIVSSVNSTTNSVAEDKASEEALASYYAQLAARQEASDDEDEDDEEDEDEDEDDDAEFEDVITADVKSTIDDEDDDDDED
SIO_010081: AWJ20_3984
subclass of: SO_0000673
so part of: AWJ20_3984
location: 862339..863472
location: region:862339-863472:1
so has part: feature:862339-863472:1:exon

XP_018733659.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:862339-863472:1:exon

AWJ20_3985
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3985
so part of: sequence
location: complement(<864284..>866941)
location: region:864284-866941:-1
so has part: feature:864284-866941:-1:exon
subclass of: SO_0000010

30036066
type: Gene
SIO_000068: ncbigene

position:864284:-1
position: 864284
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:866941:-1
position: 866941
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:864284-866941:-1:exon

AWJ20_3985
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3985
product: hypothetical protein
transcript id: XM_018881028.1
SIO_010081: AWJ20_3985
subclass of: SO_0000673
so part of: AWJ20_3985
location: complement(<864284..>866941)
location: region:864284-866941:-1
so has part: feature:864284-866941:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:864284-866941:-1:exon

AWJ20_3985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3985
codon start: 1
product: hypothetical protein
translation: MTTRSNKKRQKEDMKFSIGYSKDVYENPTGSASVVGDTSHNYEEETVEESDEDVDMQDMQDNSNSPRNNRNGNCRNIDPTMAVLPPNSKGIEGVFPEIINSFVGFPVTYATNGPAPYTSESSLAVITTPKFTECQLNIIEIRRLAHTQNLLLKTKKVSEPGNTHVAQRVKGHGILTFNEACIYYYDHTSREAIANCPYYISKATGETYPESIIFCSPVTTSRYIIGSESGSLYYVDISFHENKSTVEDSHSSNGVKLDIEISCFPLAIISGANNVIHLGGSYFMVTSHVNAPMLIELDVTRLNEGLFEEFVEGSTIVPDFVTPYRVIYQLDNLGPILDFYVQNDVSTSANQIIACSAGGTIKRITCGNLPSGVSEFVPVDHIQNIWSGVDAHGQLLIVVGCIGETRIFVLDENDPFFVKSELLEYNGLDLNTETLYFGTMETGTTVFLTESNIVVFPRRGVEILNPISLTPSNDGSKLVKAEIWKDMIVVTTRNTLLLFRYRADTLSLEQISDISLVTVGHEISDLSFVSGYILVSFWHCTELHLYRVSDKKNKIIHVRTSDLADPSCLLSKVALKSPGIRTVLLRGSMSHEDEIMDKLKAYVGLSDGKIIVFEDLTLSKGKDYILGRFPVGLVAHNELLFAISDTLSVSIDTDYNFKSIGGIEASPRTVLKVSEDEGSFAVALGKGFQLIQLNDLQDVQIDEIDLSIKSPTQPLPLSVKPIDDHLALVLWENRILETVDTKKMKSVGEFCLLFNEEFSSLGIVEKDGFKYCYIGGEREAKKPLFSTIDWENYNVSRSVATKGNDALKFGVVRRYMLSADGMPVPDSLQTVQTNGAVYSMFTDGDVALLGVQSSVSKNRMNGISSASSNSLADYPSTIQKQRDLS
SIO_010081: AWJ20_3985
subclass of: SO_0000673
so part of: AWJ20_3985
location: complement(864284..866941)
location: region:864284-866941:-1
so has part: feature:864284-866941:-1:exon

XP_018733660.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:864284-866941:-1:exon

AWJ20_3986
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: VMA3
locus tag: AWJ20_3986
so part of: sequence
location: complement(<868717..>869025)
location: region:868717-869025:-1
so has part: feature:868717-869025:-1:exon
subclass of: SO_0000010

30036067
type: Gene
SIO_000068: ncbigene

position:868717:-1
position: 868717
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:869025:-1
position: 869025
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:868717-869025:-1:exon

AWJ20_3986
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: VMA3
locus tag: AWJ20_3986
product: H(+)-transporting V0 sector ATPase subunit c
transcript id: XM_018881029.1
SIO_010081: AWJ20_3986
subclass of: SO_0000673
so part of: AWJ20_3986
location: complement(<868717..>869025)
location: region:868717-869025:-1
so has part: feature:868717-869025:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:868717-869025:-1:exon

AWJ20_3986
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: VMA3
locus tag: AWJ20_3986
inference: similar to AA sequence:KEGG_Orthology:K02155
note: Proteolipid subunit c of the V0 domain of vacuolar H(+)-ATPase; dicyclohexylcarbodiimide binding subunit; required for vacuolar acidification and important for copper and iron metal ion homeostasis; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 15252052]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0033179 - proton-transporting V-type ATPase, V0 domain [Evidence IEA]; GO_component: GO:0033177 - proton-transporting two-sector ATPase complex, proton-transporting domain [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0000220 - vacuolar proton-transporting V-type ATPase, V0 domain [Evidence TAS] [PMID 10224039]; GO_component: GO:0000220 - vacuolar proton-transporting V-type ATPase, V0 domain [Evidence TAS] [PMID 9442887]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015078 - hydrogen ion transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015078 - hydrogen ion transmembrane transporter activity [Evidence TAS] [PMID 12482875]; GO_process: GO:0015991 - ATP hydrolysis coupled proton transport [Evidence IEA]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IMP] [PMID 9434348]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IMP] [PMID 9434348]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 2145283]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 2145283]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence TAS] [PMID 12482875]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007035 - vacuolar acidification [Evidence TAS] [PMID 10224039]; GO_process: GO:0007035 - vacuol…
codon start: 1
product: H(+)-transporting V0 sector ATPase subunit c
translation: MAGIIAIYGLVVSVLVTGSLKQQQALYTGFIQLGAGLSVGLAGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALLLNSRATQDVTC
SIO_010081: AWJ20_3986
subclass of: SO_0000673
so part of: AWJ20_3986
location: complement(868717..869025)
location: region:868717-869025:-1
so has part: feature:868717-869025:-1:exon

XP_018733661.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:868717-869025:-1:exon

AWJ20_3987
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PRP46
locus tag: AWJ20_3987
so part of: sequence
location: complement(<870547..>871992)
location: region:870547-871992:-1
so has part: feature:870547-871992:-1:exon
subclass of: SO_0000010

30036068
type: Gene
SIO_000068: ncbigene

position:870547:-1
position: 870547
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:871992:-1
position: 871992
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:870547-871992:-1:exon

AWJ20_3987
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PRP46
locus tag: AWJ20_3987
product: Prp46p
transcript id: XM_018881030.1
SIO_010081: AWJ20_3987
subclass of: SO_0000673
so part of: AWJ20_3987
location: complement(<870547..>871992)
location: region:870547-871992:-1
so has part: feature:870547-871992:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:870547-871992:-1:exon

AWJ20_3987
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PRP46
locus tag: AWJ20_3987
inference: similar to AA sequence:KEGG_Orthology:K12862
note: Member of the NineTeen Complex (NTC); this complex contains Prp19p and stabilizes U6 snRNA in catalytic forms of the spliceosome containing U2, U5, and U6 snRNAs; GO_component: GO:0000974 - Prp19 complex [Evidence IPI] [PMID 12088152]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IDA] [PMID 11884590]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 12554883]
codon start: 1
product: Prp46p
translation: MSSEYIGRLTSQLFPDSPLESVLDVEYTGVPRLRIRRKLVDYNEVKDLPQELADKLAQANAKKGKSTNGGRIKKRIQREKVNLGQDADVTTAKLIETVSENDRNSAAKSGTGSSDLAVVVQTKTPLQKQELPSINRNNFSAESAVSVRSPLHAVHAQVRPTWHPPWKLKRVLAGHQGWVRSVCVDPDNKFFATGSADRTIKIWDLASGRLRVTLTGHIMAVRGLVISPRHPYLFSAGEDKMVKCWDLEHNKVVRQYHGHLSSVYSVDLHPTLDLLVTAGRDSVARVWDIRTRHPVHVLTGHKATVSQVRCQSADPQVITTSMDSTVRLWDLAAGKTQTVLTHHKKSVRALTLHPTEFTFATGSPDNIKQWKFPEGAFMHNFAPPQNAIINTLSVNEDGVMFAGGDDGSMGFFDWSSGYKFQQFDTVAVPGSLSAESGIFASTFDRSGLRLITCEADKSVKIWAEDNEATEETHPLQWKPTL
SIO_010081: AWJ20_3987
subclass of: SO_0000673
so part of: AWJ20_3987
location: complement(870547..871992)
location: region:870547-871992:-1
so has part: feature:870547-871992:-1:exon

XP_018733662.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:870547-871992:-1:exon

AWJ20_3988
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: NUS1
locus tag: AWJ20_3988
so part of: sequence
location: <884483..>885475
location: region:884483-885475:1
so has part: feature:884483-885475:1:exon
subclass of: SO_0000010

30036069
type: Gene
SIO_000068: ncbigene

position:884483:1
position: 884483
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:885475:1
position: 885475
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:884483-885475:1:exon

AWJ20_3988
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: NUS1
locus tag: AWJ20_3988
product: Nus1p
transcript id: XM_018881031.1
SIO_010081: AWJ20_3988
subclass of: SO_0000673
so part of: AWJ20_3988
location: <884483..>885475
location: region:884483-885475:1
so has part: feature:884483-885475:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:884483-885475:1:exon

AWJ20_3988
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: NUS1
locus tag: AWJ20_3988
inference: similar to AA sequence:KEGG_Orthology:K19177
note: Putative prenyltransferase; required for cell viability; proposed to be involved in protein trafficking because tet-repressible mutant shows accumulation of hypoglycosylated forms of CPY; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11086160]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 10515935]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 14690591]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24390141]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 14690591]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0008834 - di-trans,poly-cis-decaprenylcistransferase activity [Evidence IEA]; GO_function: GO:0004659 - prenyltransferase activity [Evidence ISS] [PMID 14690591]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 16943325]
codon start: 1
product: Nus1p
translation: MSDSGDIGAFASAVRQTPETYRSRGQPRRVSNAIARAMVSSGATKDSRLEPDAPLSSHLTYLVFRFILQIFYFCFSGYQWVLYYYHRLRLRISSVAVYHNRTPQLIRSDVVSLEKIPGHVATVLNLKNESEEGGGIDGLLHEVGELAAWCVGAGISVLTVYEKRGILKSMPIQDVNRAITRKLENYFGISNTPKFRLVIPHLHSQSSIRPGDNGDDATDEKFDLVINLISLTDGRTSIVELSKTLADMAMEHKLSSRDLSLSLIDRHLRDILEEPDLVILFSPDIDLQGFPPWQIRLSEIFYLPDNDEVSYVVFLKALQKYAKCKINVGR
SIO_010081: AWJ20_3988
subclass of: SO_0000673
so part of: AWJ20_3988
location: 884483..885475
location: region:884483-885475:1
so has part: feature:884483-885475:1:exon

XP_018733663.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:884483-885475:1:exon

AWJ20_3989
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: NPR3
locus tag: AWJ20_3989
so part of: sequence
location: <885790..>888651
location: region:885790-888651:1
so has part: feature:885790-888651:1:exon
subclass of: SO_0000010

30036070
type: Gene
SIO_000068: ncbigene

position:885790:1
position: 885790
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:888651:1
position: 888651
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:885790-888651:1:exon

AWJ20_3989
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: NPR3
locus tag: AWJ20_3989
product: Npr3p
transcript id: XM_018881032.1
SIO_010081: AWJ20_3989
subclass of: SO_0000673
so part of: AWJ20_3989
location: <885790..>888651
location: region:885790-888651:1
so has part: feature:885790-888651:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:885790-888651:1:exon

AWJ20_3989
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: NPR3
locus tag: AWJ20_3989
note: Subunit of SEA (Seh1-associated), Npr2/3, and Iml1p complexes; Npr2/3 complex mediates downregulation of TORC1 activity upon amino acid limitation; SEA complex is a coatomer-related complex that associates dynamically with the vacuole; Iml1p complex (Iml1p-Npr2p-Npr3p) is required for non-nitrogen-starvation (NNS)-induced autophagy; required for Npr2p phosphorylation and Iml1p-Npr2p interaction; null mutant shows delayed meiotic DNA replication and double-strand break repair; GO_component: GO:1990130 - Iml1 complex [Evidence IDA] [PMID 21900499]; GO_component: GO:0035859 - Seh1-associated complex [Evidence IDA] [PMID 21454883]; GO_component: GO:0097042 - extrinsic component of fungal-type vacuolar membrane [Evidence IDA] [PMID 21454883]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034198 - cellular response to amino acid starvation [Evidence IMP] [PMID 19521502]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IMP] [PMID 18069899]; GO_process: GO:0032007 - negative regulation of TOR signaling [Evidence IMP] [PMID 19521502]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 24603354]; GO_process: GO:2000785 - regulation of autophagic vacuole assembly [Evidence IMP] [PMID 21900499]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Npr3p
translation: MSYLNLPNPCLSAVLLTVSTHSGPQFVFNYPPVPTTIDTSLLKDRETELLSDSESDSEWSYSSDDSNDGSDSLANEEVIQESDGGSGDSNGRSVNGTTPEPQYRGMPGSLLERLERPRGSTIRRHHRNLSVSQRRRSSSSVGTAVGSLKGLQKKKAHKRGLGLSSTGNGRDTSARANGTAPHTNGNTTKNNTVTVNSKSGSGEGNIQDAEDLDITKVVGFDTDFLGELLCPQRAMCNMRFEMCVDDTVFLGLPIHVQADGQWRKKKFSKAPRSVPSTLMENGGINGLKARKRKTGARRARLGADGDRRLNLSGDEHGNIESTGPNETNVLSDENESDASDISDVSDVGSDVSDSDGDGDGDDGTKVAQEQGEIRPGGSHPNRKADNLSASISSLPEFSDPQSPMRMFQVTFVMTPPVTEYKFRVDQMYYFVLANFVKTLRTEQAKSNYVWNEVNTMLKIRDKALSTVDGNVDDGNNNGETKKKRLSPYELCDEMIEKSSLALAIAQLFNAIDISDIANLRINNKLRSFQIPIEYEFTRLPAITEPYLSRSYLTSISDFDNIINEGVAVGSGSSQFNVYCTILLLDSPDRIIKDIGVDPYSPLANFIRDINPTVTLQTLANTSGVEVGHVIELMRSLIYWRKARPIAPLHHRNIYAVSPLASIGQIYKYIPLFKEEFPALPSLPRMLSMLSTGKPRSYAFHIPSRDHRDVYLNALGWLFKYGFVMQLRTFVWLRVTKKIKMAVNRDIQNEEQLRESIREAESTNNVQDENGGDLKNTDTSTDNTSKRDPDNIPSTNNTTDNKATTSNTAHATTTTLISEVGGIKITSTTTPSASSNHLNELNTTTDAAGSTAGGKFSSSSSRSDVSDMSAAAEDWKQDTILLDPTTATLLQKKWINKITESKPAEVVALFNRVVKYFNGHTPMESVLLVENFPRQDFRKVLSTFDEFLIVVRHW
SIO_010081: AWJ20_3989
subclass of: SO_0000673
so part of: AWJ20_3989
location: 885790..888651
location: region:885790-888651:1
so has part: feature:885790-888651:1:exon

XP_018733664.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:885790-888651:1:exon

AWJ20_3990
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: UBC8
locus tag: AWJ20_3990
so part of: sequence
location: complement(<888921..>889427)
location: region:888921-889427:-1
so has part: feature:888921-889427:-1:exon
subclass of: SO_0000010

30036072
type: Gene
SIO_000068: ncbigene

position:888921:-1
position: 888921
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:889427:-1
position: 889427
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:888921-889427:-1:exon

AWJ20_3990
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: UBC8
locus tag: AWJ20_3990
product: E2 ubiquitin-conjugating protein UBC8
transcript id: XM_018881034.1
SIO_010081: AWJ20_3990
subclass of: SO_0000673
so part of: AWJ20_3990
location: complement(<888921..>889427)
location: region:888921-889427:-1
so has part: feature:888921-889427:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:888921-889427:-1:exon

AWJ20_3990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: UBC8
locus tag: AWJ20_3990
inference: similar to AA sequence:KEGG_Orthology:K10576
note: Ubiquitin-conjugating enzyme that regulates gluconeogenesis; negatively regulates gluconeogenesis by mediating the glucose-induced ubiquitination of fructose-1,6-bisphosphatase (FBPase); cytoplasmic enzyme that catalyzes the ubiquitination of histones in vitro; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10811607]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016881 - acid-amino acid ligase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 1869573]; GO_process: GO:0045721 - negative regulation of gluconeogenesis [Evidence IMP] [PMID 12686616]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12686616]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 10811607]
codon start: 1
product: E2 ubiquitin-conjugating protein UBC8
translation: MSDYEVTLVNDNMQEFFVKFKGPSETPFDGGAWKIHVELPDQYPYKSPSIGFVNKIFHPNIDELSGSVCLDVINQTWSPMFDMVNIFEVFLPQLLRYPNPTDPLNGEASALLLREPKAYEKRVQEYVKLYASGEALNNTDDNSDSDMEMSSVGSFDSDDDEAAGQMEV
SIO_010081: AWJ20_3990
subclass of: SO_0000673
so part of: AWJ20_3990
location: complement(888921..889427)
location: region:888921-889427:-1
so has part: feature:888921-889427:-1:exon

XP_018733665.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:888921-889427:-1:exon

AWJ20_3991
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SPO7
locus tag: AWJ20_3991
so part of: sequence
location: <890923..>892407
location: region:890923-892407:1
so has part: feature:890923-892407:1:exon
subclass of: SO_0000010

30036073
type: Gene
SIO_000068: ncbigene

position:890923:1
position: 890923
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:892407:1
position: 892407
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:890923-892407:1:exon

AWJ20_3991
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SPO7
locus tag: AWJ20_3991
product: Nem1-Spo7 phosphatase regulatory subunit SPO7
transcript id: XM_018881035.1
SIO_010081: AWJ20_3991
subclass of: SO_0000673
so part of: AWJ20_3991
location: <890923..>892407
location: region:890923-892407:1
so has part: feature:890923-892407:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:890923-892407:1:exon

AWJ20_3991
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SPO7
locus tag: AWJ20_3991
codon start: 1
product: Nem1-Spo7 phosphatase regulatory subunit SPO7
translation: MNNIGISDLDESAETRPTQPSGGSEDERVYEEQSSIEIGEITSPRFTGTEQFGDDVIEGYNNNSSLPALDNQESYLNLNSNSNRDIDTQRASHITSHNQGRNVASTDSAGIYRSPTNLTSDDTPVDQDISSPIQSSGPVSESTYTTANYIKSAIESNNSTPSSSAPNTALPTPSPTPTPSLTPSPKPIVPAVDNDNPGIDTGAALPTAPVSSGTGASSTGATETVARRRRKSSTTKSGSKSHSRNSSSISSISAEPIPPNNPTQIFRNLLIMEESFRDQYIALRRTRRKNVIFFSFLMTAAVYFTYSVFVEPSIYRAVSFFDRLMFLVSIISVGLFYLTGLYNQAFVLAPKFVHNANKGIRAFNIKLVVVKPTWTESVIRLLWDPVYTAKKGGLIKLILSSRVFTTDTIETWDLYRERYWLKENERARRRVQNQTLSTSTPAAAASGLGRKKNTTVSSDGSTALPRRSRLRNTAKTASSHLTVSTGVPSAPSAI
SIO_010081: AWJ20_3991
subclass of: SO_0000673
so part of: AWJ20_3991
location: 890923..892407
location: region:890923-892407:1
so has part: feature:890923-892407:1:exon

XP_018733666.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:890923-892407:1:exon

AWJ20_3992
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: GPI13
locus tag: AWJ20_3992
so part of: sequence
location: <893079..>896186
location: region:893079-896186:1
so has part: feature:893079-896186:1:exon
subclass of: SO_0000010

30036074
type: Gene
SIO_000068: ncbigene

position:893079:1
position: 893079
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:896186:1
position: 896186
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:893079-896186:1:exon

AWJ20_3992
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: GPI13
locus tag: AWJ20_3992
product: Gpi13p
transcript id: XM_018881036.1
SIO_010081: AWJ20_3992
subclass of: SO_0000673
so part of: AWJ20_3992
location: <893079..>896186
location: region:893079-896186:1
so has part: feature:893079-896186:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:893079-896186:1:exon

AWJ20_3992
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: GPI13
locus tag: AWJ20_3992
inference: similar to AA sequence:KEGG_Orthology:K05288
note: ER membrane localized phosphoryltransferase; adds phosphoethanolamine onto the third mannose residue of the glycosylphosphatidylinositol (GPI) anchor precursor; similar to human PIG-O protein; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence ISS] [PMID 10793139]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0051377 - mannose-ethanolamine phosphotransferase activity [Evidence IMP] [PMID 12441642]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IMP] [PMID 10793139]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IMP] [PMID 10793139]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IMP] [PMID 12441642]; GO_process: GO:0008152 - metabolic process [Evidence IEA]
codon start: 1
product: Gpi13p
translation: MSSESVLPNSVPPTSNGNNISPNVLAREAKRKQQAADRRVQKAEALRKVNGAWIGAFGITIWVIVLQVAGLLLFKNGFLLSRPVFEDHSECSVLPETQDNIVSQPSKGCWTEPSFDKAILIVIDALRFDFTIPSDKASPSHFENKLPFLYNEFINNPQNSLLLKFMADPPTTTLQRLKGLTTGSLPTFIDAGSNFAGTDIAEDNWLAQATNDNKTIAFVGDDTWTALFPNQFGNISFPYDSLNVWDLDSVDNGVIEHIFPIINGNYGHWDIAVGHLLGVDHAGHKYGPNHNGMKDKLEQMNQFLENLVASISDDTLLVVMGDHGMDLKGDHGGESLLELEAALWMYSKKPFFGRKYGSDIYNTSDSGKNFRSVAQIDFVPTFSLLMGLPIPFNNLGAPIVEAFIGPDSKNYQALARAEALTAGQIHRYTEKSTSASSAFSESTIQELWHNVLSADSIGAGLSAAVAYQTAVIDHYREKWIKFHLPDIIRGVLIITASLLSVVIAASNINGSNMLQTAKRVTISALSFSAVGFVYRISQDLVYSVLATTSLGIVLGLVWTSRASHAVSSSSPAPTPTPRSNTQEGQDEQGEEADLGTKKVKETKENSKLSAVPSVWTILAIFLSLVHAVVFTSNSFTVWESSILNYLLATFGFVAFVYARRLDDVIRRTIATWHCVAFIVLTKISSFSVLCREEHGIGCKSTFYQDGSSISSPYALVGLVIVSLALPRIIVSFYKTSESYHGAAPIWLSIGLQTIMTLSGLFWFLDGAETFNWKVAAAIDHELLHTVKILIARIGLGASLVAGNYGWLKGTLCCQLDFEGKRPILKGYYNIYGSFAFLFVLNFFAATLIVNKPMGGIILSVLIYHSMTLMEILHLLQIKESIIGPVVFGLLGSAYFFSTGHQATIPSVQWDVGFIASKTISFPLTHIAIFLNSLGPFIITALIVPIVPLWKVGPFKSGEAAFTRALKSALAFIAYHTVVALSSMIWATYFRRHLMVWKIFAPRFMLAAVTLPAVGVSIALALLAVGYTVRQVSNIF
SIO_010081: AWJ20_3992
subclass of: SO_0000673
so part of: AWJ20_3992
location: 893079..896186
location: region:893079-896186:1
so has part: feature:893079-896186:1:exon

XP_018733667.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:893079-896186:1:exon

AWJ20_3993
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3993
so part of: sequence
location: complement(<896334..>897368)
location: region:896334-897368:-1
so has part: feature:896334-897368:-1:exon
subclass of: SO_0000010

30036075
type: Gene
SIO_000068: ncbigene

position:896334:-1
position: 896334
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:897368:-1
position: 897368
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:896334-897368:-1:exon

AWJ20_3993
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3993
product: hypothetical protein
transcript id: XM_018881037.1
SIO_010081: AWJ20_3993
subclass of: SO_0000673
so part of: AWJ20_3993
location: complement(<896334..>897368)
location: region:896334-897368:-1
so has part: feature:896334-897368:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:896334-897368:-1:exon

AWJ20_3993
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3993
codon start: 1
product: hypothetical protein
translation: MDDANGGIGDELDGISLRDISAVRYVRHHEWLELVVGTAIPTHQIQIPKIFTPIDADNSSPWSFNDSDSVKAKLESIENEIKQLESGAKSGWVEKPEEAAKSDFYRAGIAKLREDFGSVSKDADYYGDITLKIETKFGARVIEKKRLRRVGVEVGDEVIDEDEEDKPETKKPALGEDKPQTVEKSDSQQASEISDVSNKSEDFDIKDSGDSNGTGPNINKTLQTGTSSTANESENVQTNGDSIGQESTPNSTTEVSDTNDESNFSQSVKTSVPQEYDQQSEDQPVSEVQSDLLSLDQGEELLLGDDNLVDLDGNNDNVGEDIYMEGTSFEDAELGDVLGSLPES
SIO_010081: AWJ20_3993
subclass of: SO_0000673
so part of: AWJ20_3993
location: complement(896334..897368)
location: region:896334-897368:-1
so has part: feature:896334-897368:-1:exon

XP_018733668.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:896334-897368:-1:exon

AWJ20_3994
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3994
so part of: sequence
location: complement(<897589..>900696)
location: region:897589-900696:-1
so has part: feature:897589-900696:-1:exon
subclass of: SO_0000010

30036076
type: Gene
SIO_000068: ncbigene

position:897589:-1
position: 897589
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:900696:-1
position: 900696
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:897589-900696:-1:exon

AWJ20_3994
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3994
product: hypothetical protein
transcript id: XM_018881038.1
SIO_010081: AWJ20_3994
subclass of: SO_0000673
so part of: AWJ20_3994
location: complement(<897589..>900696)
location: region:897589-900696:-1
so has part: feature:897589-900696:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:897589-900696:-1:exon

AWJ20_3994
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3994
codon start: 1
product: hypothetical protein
translation: MSGNGGANNGIIIETGVIGGDGKVTSTISPPIAVPAGIEASGNSDNNSVVKGEFSDPNLITLCIPLRYTYLTRPSETTEADYDGRKKIIVYETKSTSLWREADEDDKNKQFVKSMSGTQFIDCLPSLRAAVNQINNEKNSLVTARMGEDRLLENIVTVVLDGPREEVNKQRAKLNRGYFQVERWDIGISKQLVSDSLNEQGDFKSALYLGLEEVAEYCGVSIFVTSFTDKALFSVNSTEENNYLKHQYDRFDGDDYHILIYGDQDAARFANIRMRVILSKLANGSDFIADLVPLELSLQPLVAGPQAVNLHSIQEQASVDIFTMDYLPEVLGSLNPQLFDGEAIVRDVDQLYIVGPSSANVELAKFLIEQVKTRTQMVVKDCVMSHAKLDLLISRYRNKIRDIMNRFATFVQLPYFSSNRSLVRVMGTTASSVEASIQELMRMAADFYEANYWIHGGKSDEEGILVRPNGVLNPKSIEALQKIAASNNCIVTTQNNTAFEIIGYGSDTKRAIAMLKSLSLWDDDISRQNVQISYQLEVSLDLKSFMAGKKYGKMLRIMSNSNVWIKFIPFNEYNFFVVLTADDYSSSDSGIQLLEDEYPSEISFHIPDTYHKEIIGAGGSGIQAIMRKHNVFIKFGNSLELYPNAIAQHKLNNVVIRCPSKNAKSMTLARDELLISVRDRVAEHYNTFVHMPRSHRRIILNENCGIIRQIESKTNSIIQIPDHDNYSDIENDLIEIRGLGTSSEEASQLLRTALPTDYEFRVAHSSKFTSLVNEKQGDFYTKIVVPFRIAFQFEVMVYNQVKSKKGDETAPPYHRIVISHSHEHIMGLDEAIQELTTFLRERELDIIDRSRVKDDPIEYGSAATLGHKRANSALNVNHNRIPQKNLPHSLPTGPAAVSGGHSIPTGPTTPRRLRYESKQLPPGVSYGDAFTSYDDRSGYYDSRSSAMYETGLGVAPVGSYRDHPLSRQLEAETNRQFQSRAYDGVSESAGNFPSGFTDRWQDDEVYEPRRRDRSPPAAPKYNESTIRKRGYGSYY
SIO_010081: AWJ20_3994
subclass of: SO_0000673
so part of: AWJ20_3994
location: complement(897589..900696)
location: region:897589-900696:-1
so has part: feature:897589-900696:-1:exon

XP_018733669.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:897589-900696:-1:exon

AWJ20_3995
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_3995
so part of: sequence
location: complement(<901035..>903077)
location: region:901035-903077:-1
so has part: feature:901035-903077:-1:exon
subclass of: SO_0000010

30036077
type: Gene
SIO_000068: ncbigene

position:901035:-1
position: 901035
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:903077:-1
position: 903077
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:901035-903077:-1:exon

AWJ20_3995
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_3995
product: hypothetical protein
transcript id: XM_018881039.1
SIO_010081: AWJ20_3995
subclass of: SO_0000673
so part of: AWJ20_3995
location: complement(<901035..>903077)
location: region:901035-903077:-1
so has part: feature:901035-903077:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:901035-903077:-1:exon

AWJ20_3995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_3995
codon start: 1
product: hypothetical protein
translation: MPPSTLQLRCYSQWIRRKPAGRSCLFCGYGIMEQRRGIVVVPRHPKYRAVTPAPTRTGYRDLAPDPDTALPHDTNNINHSRYNNQLRTESESKVRDLTNSERAWPSIDVETRLDFQEFKMAALSLSFDMSEDLSYRMAPTNEPLESIASNHAISDQEDITTLQLSKHSEINLVEQYDNVLNSLINDHLDIFTNYFASNLSSETSISSMAIVQLASQEINSDYLRVRAKRSKLKRSPCPASLYNNFLRQLYWNGDGGPPSPRYIFQAYKRLPYPPPRSINPVHLETLIAFFMGHASRSDPTMYLTILSDIAESGMPISIHEHSAALISLGKQLDKTDKKHHAQILIEERVADLESQGSIGRNNDSQQELNKGLDTRDPLKFGTNDSNVHALNALLSIALKSGSSSSAVEKIFSELSGRADRFTRVLMLSYYGKKRDGRQVKTQYRNIIDSGDIIDMPVLNLVMKYFLLCGYVEEAESMLHKLVRQKSKAEGSQIMGSHSHRKLESQLRSRVTIMDYLLKILRDKNIDVGRRYSVPLVPDFYTFGNFFQYYCLGVGNFNKSVEILRLMTEEAGYLPDKHIFINFYKAFYLHHHNMANEWTLQRLNYITELVCHYELLQAEKHGEHFCTTNMAVAAFRAYRMLAPTSNTDFDALERQLSKKGSRKRFYNVFTTLKKLSTTRLE
SIO_010081: AWJ20_3995
subclass of: SO_0000673
so part of: AWJ20_3995
location: complement(901035..903077)
location: region:901035-903077:-1
so has part: feature:901035-903077:-1:exon

XP_018733670.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:901035-903077:-1:exon

AWJ20_3996
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SVP26
locus tag: AWJ20_3996
so part of: sequence
location: <907621..>908304
location: region:907621-908304:1
so has part: feature:907621-908304:1:exon
subclass of: SO_0000010

30036078
type: Gene
SIO_000068: ncbigene

position:907621:1
position: 907621
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:908304:1
position: 908304
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:907621-908304:1:exon

AWJ20_3996
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SVP26
locus tag: AWJ20_3996
product: Svp26p
transcript id: XM_018881040.1
SIO_010081: AWJ20_3996
subclass of: SO_0000673
so part of: AWJ20_3996
location: <907621..>908304
location: region:907621-908304:1
so has part: feature:907621-908304:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:907621-908304:1:exon

AWJ20_3996
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SVP26
locus tag: AWJ20_3996
note: Integral membrane protein of the early Golgi apparatus and ER; involved in COP II vesicle transport; may also function to promote retention of proteins in the early Golgi compartment; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 16957051]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0030173 - integral component of Golgi membrane [Evidence IDA] [PMID 16107716]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 16957051]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0097020 - COPII adaptor activity [Evidence IMP,IPI] [PMID 20236934]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IDA,IMP] [PMID 16957051]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI,IMP] [PMID 16107716]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 16107716]; GO_process: GO:0045053 - protein retention in Golgi apparatus [Evidence IMP] [PMID 16107716]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Svp26p
translation: MVVLTLLSYLGTLSAFVFLTMAVASGLYYLSEQVEEHTVWTKTVLTRAIYGIIGIHVLLLIFDGFPWLLTVGSIATHILYLQNLKRFPFIQLYSGIFISSCIAVVANHWLWFRYFSDPSIPPAIILIERPDYAGPTHPPFSQVASFFGICVWLIPFSLFISLSVGDNVLPTSYSTNFDNDQDESGAAKAKRRSAGLAKVAVEWFYKVIADIGRKFGYEIETGKGPLI
SIO_010081: AWJ20_3996
subclass of: SO_0000673
so part of: AWJ20_3996
location: 907621..908304
location: region:907621-908304:1
so has part: feature:907621-908304:1:exon

XP_018733671.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:907621-908304:1:exon

AWJ20_3997
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PRS2
locus tag: AWJ20_3997
so part of: sequence
location: <909451..>910419
location: region:909451-910419:1
so has part: feature:909451-910419:1:exon
subclass of: SO_0000010

30036079
type: Gene
SIO_000068: ncbigene

position:909451:1
position: 909451
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:910419:1
position: 910419
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:909451-910419:1:exon

AWJ20_3997
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PRS2
locus tag: AWJ20_3997
product: ribose phosphate diphosphokinase subunit PRS2
transcript id: XM_018881041.1
SIO_010081: AWJ20_3997
subclass of: SO_0000673
so part of: AWJ20_3997
location: <909451..>910419
location: region:909451-910419:1
so has part: feature:909451-910419:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:909451-910419:1:exon

AWJ20_3997
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PRS2
locus tag: AWJ20_3997
inference: similar to AA sequence:KEGG_Orthology:K00948
note: 5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase, synthesizes PRPP; which is required for nucleotide, histidine, and tryptophan biosynthesis; one of five related enzymes, which are active as heteromultimeric complexes; PRS2 has a paralog, PRS4, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004749 - ribose phosphate diphosphokinase activity [Evidence IEA,IEA]; GO_function: GO:0004749 - ribose phosphate diphosphokinase activity [Evidence IGI] [PMID 15280369]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate biosynthetic process [Evidence IEA]; GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate biosynthetic process [Evidence IMP] [PMID 10212224]; GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate biosynthetic process [Evidence IGI] [PMID 15280369]; GO_process: GO:0044249 - cellular biosynthetic process [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IPI] [PMID 15470112]; GO_process: GO:0009165 - nucleotide biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0009156 - ribonucleoside monophosphate biosynthetic process [Evidence IEA]
codon start: 1
product: ribose phosphate diphosphokinase subunit PRS2
translation: MSVSTNSIKLLAGNSHPELAKLVSQKLGVELSKIQVSQYSNQETSVTIGESVRDEDVFILQTGCGEVNDYLMELLIIIHACKTASARRITAVIPNFPYARQDKKDKGRAPITAKLMANMLQTAGCNHVITMDLHASQIQGFFEVPVDNLYAEPTVLRYIRDQVDYSNSVIVSPDAGGAKRAAALADRLDLNFALIHKERQKANEVSRMVLVGYVQDKVCILVDDMADTCGTLVKAAETLISHGAKKVIAIVTHGIFSGDAVNRINNSPLDKVVSTNTVPHDNIQAQCPKLDHIDISPTLAEAIRRLHNGESVSYLFTHAPLG
SIO_010081: AWJ20_3997
subclass of: SO_0000673
so part of: AWJ20_3997
location: 909451..910419
location: region:909451-910419:1
so has part: feature:909451-910419:1:exon

XP_018733672.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:909451-910419:1:exon

AWJ20_3998
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SLY41
locus tag: AWJ20_3998
so part of: sequence
location: complement(<910743..>912932)
location: region:910743-912932:-1
so has part: feature:910743-912932:-1:exon
subclass of: SO_0000010

30036080
type: Gene
SIO_000068: ncbigene

position:910743:-1
position: 910743
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:912932:-1
position: 912932
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:910743-912932:-1:exon

AWJ20_3998
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SLY41
locus tag: AWJ20_3998
product: Sly41p
transcript id: XM_018881042.1
SIO_010081: AWJ20_3998
subclass of: SO_0000673
so part of: AWJ20_3998
location: complement(<910743..>912932)
location: region:910743-912932:-1
so has part: feature:910743-912932:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:910743-912932:-1:exon

AWJ20_3998
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SLY41
locus tag: AWJ20_3998
inference: similar to AA sequence:KEGG_Orthology:K15283
note: Protein involved in ER-to-Golgi transport; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 23613772]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI] [PMID 1903839]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]
codon start: 1
product: Sly41p
translation: MSTLSILHVQDFNKTISVDSSQYGETVSRTQTPLQAKWDIVPIRDCNSSVLLSPRAENLPSPSRHNYPPRRTRSQTELVPASSGLAKSVSSPGTSISSPSTPANIGIPQAGYVAIFNLPDPSLTVMAGGGARSATATTSGTGPISGTASQLSSSATFSLRGGGMDPGSSGTRARTNSGPPRPAIIKTTFVDQNNSSNGSDDTSSSPLTLNSASSGTSIGTGFHNVEAVTGSVHGVSGKNPHVRHRDSLSLNGSSAQNFGVMPVTSGTKTATGSAASAGGAYEPGSLTGPVNGSVFSSDSSEETLVAALSPVGAPPGGLSSSFIPNHNNQHLHHIHNQRATSGLLPLAGGNAARRHRSKSFSETVSETSQEAIRQLAPPISLPLVLTCIAWYSTSAMSNTLNKSILTAFPYPVSLSMVQFTLAASFGISTMKLAQISPDIALALPKGIISPGRVGFRPPTKAILMATAPMGMFQLSGHILSHMSTSLIPVSLVHTIKALSPLFTVAAYRLLFGVSYKRSTYLSLIPLTLGVIMTCSVEFSSHFMGLVYALIAALIFVSQNMFSKKLLTSGNTGGDESTKLDKLNVLCYCSSLAFIFTFPLWFFTEGIGLLGDYSRSSGNFFGASSNGVDAGSIMSTSGLMLAFLINGFVHFAQNLLAFQVLGMVSPVTYSVASLIKRIVVITVAIIWFGQRVTGTQGWGILLTFLGLYLYDRCGGDKTKNYEPKSSVLPK
SIO_010081: AWJ20_3998
subclass of: SO_0000673
so part of: AWJ20_3998
location: complement(910743..912932)
location: region:910743-912932:-1
so has part: feature:910743-912932:-1:exon

XP_018733673.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:910743-912932:-1:exon

AWJ20_3999
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: FRA1
locus tag: AWJ20_3999
so part of: sequence
location: complement(<914141..>916000)
location: region:914141-916000:-1
so has part: feature:914141-916000:-1:exon
subclass of: SO_0000010

30036081
type: Gene
SIO_000068: ncbigene

position:914141:-1
position: 914141
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:916000:-1
position: 916000
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:914141-916000:-1:exon

AWJ20_3999
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: FRA1
locus tag: AWJ20_3999
product: Fra1p
transcript id: XM_018881043.1
SIO_010081: AWJ20_3999
subclass of: SO_0000673
so part of: AWJ20_3999
location: complement(<914141..>916000)
location: region:914141-916000:-1
so has part: feature:914141-916000:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:914141-916000:-1:exon

AWJ20_3999
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: FRA1
locus tag: AWJ20_3999
inference: similar to AA sequence:KEGG_Orthology:K01262
note: Protein involved in negative regulation of iron regulon transcription; forms an iron independent complex with Fra2p, Grx3p, and Grx4p; cytosolic; mutant fails to repress transcription of iron regulon and is defective in spore formation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 18281282]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0034396 - negative regulation of transcription from RNA polymerase II promoter in response to iron [Evidence IGI,IMP] [PMID 18281282]; GO_process: GO:0006508 - proteolysis [Evidence IEA]
codon start: 1
product: Fra1p
translation: MVDTSARLSALRSQLSKNNIGYYIVLTQDEHQSEYTSNADDRREFISGFTGSAGTAVIGHSKAVLATDGRYFLQAASQLDSNWELLKQGVKGVPTWQEWVATEATKTGSNIAVDPKLISYSEVKSLKSLLATKGGKAELISLEDNLIDLVWANDRPSRPLTPVKILHSEYTGKSFQEKLTQLKDEIIKKNGTAFVLSALDDVAWLFNLRGEDIPYNPVFFAYAIVTADGKASLYIDSNKVTEKVAEYLKSGNVSIYPYEKAFEDAAELGAALLRINKSTSGEKKKLIIPNAASWALVEALGGPDSVQMIESPVTVAKSVKNSTEVEGAKLAHIKDGVAVIRYLAWLEKALTVDKLVLSDYEAAQKSLEFRSQMENFQGLSFETISSSGPKAAVIHYSPATDSKEIVKLDQIYLLDSGGQYLEGTTDTTRTVHYGEPSDDEKRSYTLVLKGHIALARAVFPEGSNGYMLDTLARQHLWKYGLDYRHGTGHGIGAFLNVHEGPMGIGFRPAYQNAPLQVGNVISNEPGYYEDGKYGIRIESVVVVKEVKTPFNFGDTKFFGFETITQVPLCQKLLDLSLLDVEEKQWINEYHASVYKTVRPYFSEEDPALEWLRRETLPIF
SIO_010081: AWJ20_3999
subclass of: SO_0000673
so part of: AWJ20_3999
location: complement(914141..916000)
location: region:914141-916000:-1
so has part: feature:914141-916000:-1:exon

XP_018733674.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:914141-916000:-1:exon

AWJ20_4000
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ERG11
locus tag: AWJ20_4000
so part of: sequence
location: complement(<916502..>917815)
location: region:916502-917815:-1
so has part: feature:916502-917815:-1:exon
subclass of: SO_0000010

30036085
type: Gene
SIO_000068: ncbigene

position:916502:-1
position: 916502
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:917815:-1
position: 917815
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:916502-917815:-1:exon

AWJ20_4000
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ERG11
locus tag: AWJ20_4000
product: sterol 14-demethylase
transcript id: XM_018881047.1
SIO_010081: AWJ20_4000
subclass of: SO_0000673
so part of: AWJ20_4000
location: complement(<916502..>917815)
location: region:916502-917815:-1
so has part: feature:916502-917815:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:916502-917815:-1:exon

AWJ20_4000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ERG11
locus tag: AWJ20_4000
inference: similar to AA sequence:KEGG_Orthology:K05917
note: Lanosterol 14-alpha-demethylase; catalyzes the C-14 demethylation of lanosterol to form 4,4''-dimethyl cholesta-8,14,24-triene-3-beta-ol in the ergosterol biosynthesis pathway; member of the cytochrome P450 family; associated and coordinately regulated with the P450 reductase Ncp1p; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 15951236]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004497 - monooxygenase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]; GO_function: GO:0008398 - sterol 14-demethylase activity [Evidence IEA]; GO_function: GO:0008398 - sterol 14-demethylase activity [Evidence IDA] [PMID 9087488]; GO_process: GO:0070988 - demethylation [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 200835]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA]
codon start: 1
product: sterol 14-demethylase
translation: MKIHTGRVQTTFDMNIITVHPENIKTILATNFKDYSLGVRYQQLFPLLGNGIFTLSGEGWKHSRAMLRPQFSREQVSQIDTLRAHVSQLIHNFKTKSKNGTEFFDAQVQFHNLTIDTATEFLFGESTDSLADSDKKVQGPTRLVSATDFAEHFTAALDVLALRTHVGPLYWLVDGWKFRNSIDICHNFVTYFVNKALQNPLEKGTETTGRYVFINELTKETRDPIVIRDQAFNILLAGRDTTASLLSFIVFYLARDKRVWNTLRQAVLEEFGTEVESITFESLKRCTYLNYVINEVLRLHPIVPINFRTAIRDTVLPKGGGPDGNDTLFVPKGTKIVYTVYTTQRLKEFWGEDSEEFRPERWAEGKSHTWDYLPFNGGPRICIGQQFALTETGFTLVRIIQTFKDIIYQGSPSYENLSQWTKLTASVADGVWVSFVE
SIO_010081: AWJ20_4000
subclass of: SO_0000673
so part of: AWJ20_4000
location: complement(916502..917815)
location: region:916502-917815:-1
so has part: feature:916502-917815:-1:exon

XP_018733675.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:916502-917815:-1:exon

AWJ20_4001
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: KAP122
locus tag: AWJ20_4001
so part of: sequence
location: <920607..>923210
location: region:920607-923210:1
so has part: feature:920607-923210:1:exon
subclass of: SO_0000010

30036086
type: Gene
SIO_000068: ncbigene

position:920607:1
position: 920607
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:923210:1
position: 923210
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:920607-923210:1:exon

AWJ20_4001
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: KAP122
locus tag: AWJ20_4001
product: Kap122p
transcript id: XM_018881048.1
SIO_010081: AWJ20_4001
subclass of: SO_0000673
so part of: AWJ20_4001
location: <920607..>923210
location: region:920607-923210:1
so has part: feature:920607-923210:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:920607-923210:1:exon

AWJ20_4001
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: KAP122
locus tag: AWJ20_4001
note: Karyopherin beta; responsible for import of the Toa1p-Toa2p complex into the nucleus; binds to nucleoporins Nup1p and Nup2p; may play a role in regulation of pleiotropic drug resistance; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10684247]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005635 - nuclear envelope [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP,IPI] [PMID 10525531]; GO_process: GO:0006606 - protein import into nucleus [Evidence IDA,IMP] [PMID 10525531]; GO_process: GO:0008361 - regulation of cell size [Evidence IMP] [PMID 12089449]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Kap122p
translation: MITFDDKDVDQLGSQLLAQLSAEDLNLILRFCKTLLDDYKSNSASDLKNAEVQATLISNLPYFLKIAQISFIGVEGAGGVNSSDNKVVELLLQCLETTSTWINHFLKYTEAEAQLKHFVPWFLTHLEASFSLQDDSIFKEICDMVVEMFRYNQNVWDRSTRERLYQFTFSVSPTILPPLLTLTEGLDDRNISYCRLVISIAEFLTPKYLQDPDNNGSFKQLLELLIAFSSIQPTPMVEDTMAMEILEFWNGFVEEIVGGGYLSSEQPQTGYINQIIGIYWNRIMLPPDNITNTWEKDTWQEFLSFRRDFCDFLELAYPIVSSKLFGLLVNSIVENIQQSHKTDGTRDPSSMNWRQIECSLYCLNGLSEMIGTSGDEYSTVQLVFNSSLWEDLSSCNSLRVRQTAVSLIGSFDTFFERPEGQPYLTTTLSYLFKSLSIPDLSLTASRSIQKLCASSRKHLVSLLPTLMDLYCSRQYYKTTGTVAHERTVNAIACVIQALDNLEEKAQYADRLVSILVEQLPVTIENKSQLTDPEVMLLVVSLLKCIVNIGKGLRIPEETASPNREELQSLATFWNTYSSSTREKIVGTIQWLTMDAIPFSQDPQICEVCCDIFKSGFSEIVPNPFVFDPDTILTFISAKHQYGPPTCYTTLIELSSCLVTSSSVGESTLATEYISELLQTFFSSTHENDYEPDIQIGNMQLLTQIYSHYPDSFLSNQSALPFLIGFATEMLASNDRFVIRATSKFWTTVITKDNARNETSRTRRSEILHSAGPLIVDKVVGKISGEAIRSDLECYTDVIKKLVNKYPLESKPWFVNSIINNPRPDLAKQDLSLRTRFLTKIFNLRGSRETNEVVKNFWSDCKGIANYT
SIO_010081: AWJ20_4001
subclass of: SO_0000673
so part of: AWJ20_4001
location: 920607..923210
location: region:920607-923210:1
so has part: feature:920607-923210:1:exon

XP_018733676.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:920607-923210:1:exon

AWJ20_4002
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MAK32
locus tag: AWJ20_4002
so part of: sequence
location: complement(<923609..>924694)
location: region:923609-924694:-1
so has part: feature:923609-924694:-1:exon
subclass of: SO_0000010

30036087
type: Gene
SIO_000068: ncbigene

position:923609:-1
position: 923609
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:924694:-1
position: 924694
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:923609-924694:-1:exon

AWJ20_4002
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MAK32
locus tag: AWJ20_4002
product: Mak32p
transcript id: XM_018881049.1
SIO_010081: AWJ20_4002
subclass of: SO_0000673
so part of: AWJ20_4002
location: complement(<923609..>924694)
location: region:923609-924694:-1
so has part: feature:923609-924694:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:923609-924694:-1:exon

AWJ20_4002
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MAK32
locus tag: AWJ20_4002
note: Protein necessary for stability of L-A dsRNA-containing particles; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0044419 - interspecies interaction between organisms [Evidence IMP] [PMID 3551911]
codon start: 1
product: Mak32p
translation: MGESMRREDVTPVFTSLGMFIIDEIHFTDAPSVYNVIGGAGTFGAIGARLFLPSPTESQKVGWIVDMGSDFPGSVREEIERWQTGVVLRSDASRLTTRGWNQYADNEERLFKYLAPKLRITAADIIANPPLIKSKSFHLICSPNRCEELTRHIVDASNYDPRAIIIWEPVPDECKPETYGECIKVLRSPGLVSIFSPNAKEAAQFFGLAEPMTKKDIEDVVDRFVNALNDSRIEPGTNSNMCKLIVLRCGSLGCLVCYTDISNRQPYKWFPAYHNPANEDYRVIDPTGGGNSFVGGFATGYVISGGDIVEAAVYGNVAAGLVIEQIGLPILGKDQDGNEIWNGETISTRIARYRQRSELPS
SIO_010081: AWJ20_4002
subclass of: SO_0000673
so part of: AWJ20_4002
location: complement(923609..924694)
location: region:923609-924694:-1
so has part: feature:923609-924694:-1:exon

XP_018733677.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:923609-924694:-1:exon

AWJ20_4003
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: NUP116
locus tag: AWJ20_4003
so part of: sequence
location: complement(<925146..>927719)
location: region:925146-927719:-1
so has part: feature:925146-927719:-1:exon
subclass of: SO_0000010

30036088
type: Gene
SIO_000068: ncbigene

position:925146:-1
position: 925146
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:927719:-1
position: 927719
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:925146-927719:-1:exon

AWJ20_4003
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: NUP116
locus tag: AWJ20_4003
product: FG-nucleoporin NUP116
transcript id: XM_018881050.1
SIO_010081: AWJ20_4003
subclass of: SO_0000673
so part of: AWJ20_4003
location: complement(<925146..>927719)
location: region:925146-927719:-1
so has part: feature:925146-927719:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:925146-927719:-1:exon

AWJ20_4003
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: NUP116
locus tag: AWJ20_4003
inference: similar to AA sequence:KEGG_Orthology:K14297
codon start: 1
product: FG-nucleoporin NUP116
translation: MFGATNTSPFGATNNATNTGTGLFGSTNNNTATSPFGASTGTQSSLFGAKPATATGGMFGSNTATTTNNAFGGTSNTGAFGSSGGFGTNTNTNSTSPFGSTFGANNNSTTNTGGGLFGQQAAKPAFGGFGATNNTATTSPFGTTTNNTSGGLFGQNNNAGNTGTGLFGANNTNTSSPFGSASSTTNAPAASSGFGGFGGTATQQQNKPAFGFGNSGTTNTTTTSPFGQSTTNTGTGLFGQTNTANTGGSGLFGNTSSQNTNTGTGLFGQNNTAGGATGTSGTGLFGQSNNNATSNTASPFGGFGAANNQQNTGATTGGLFSNAAKPAGSLFGGGATTTAPATSGLFGGSTPGATATGSFGVDGGANSAKPSLFGTAPAATAKPTTGLFGGANNPLGTRGTFGAPNDTTPRFGLAGNTSAQQQGTSLFGQAAKPSLFSQPSNASTNGGLSLSGSTGATQLNNSQLLASVDQNPYGNNPLFTSVNGQQAQSQPGTPVATPLSTTPSSNRKKQGIVSAYKLAPKPLFSPRPRHVGSGSPGNRSSIMGSSATGADDSINGDRTLGKLTRTGSNSPNAVANSVYSLHADEAILSSNAFSPHGSSVRRLIIDRKRTPNNSLLLTDGRSVADESSQLLTPGPSNTSVLPGSIASLDLSETTIPGTPSPNGALRTSVSPEKPFNRGMNNNGVANDSATTASAPAKPKPVLPDNEIVDEHGYWISPSQEKLDHMSLKELEGVKNFTVGRKGFGFVRFDVPIDLSQYSSVFKQIPGRIVIFGKKSCVIYPDTSSKPAPGSELNVKATISLEGVWIMTKDTREPVKDPNHPLYDKHLQRLKNLKFTTFVSWDKETGTWVFKIDPSAES
SIO_010081: AWJ20_4003
subclass of: SO_0000673
so part of: AWJ20_4003
location: complement(925146..927719)
location: region:925146-927719:-1
so has part: feature:925146-927719:-1:exon

XP_018733678.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:925146-927719:-1:exon

AWJ20_4004
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: NUP116
locus tag: AWJ20_4004
so part of: sequence
location: complement(<927802..>928641)
location: region:927802-928641:-1
so has part: feature:927802-928641:-1:exon
subclass of: SO_0000010

30036089
type: Gene
SIO_000068: ncbigene

position:927802:-1
position: 927802
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:928641:-1
position: 928641
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:927802-928641:-1:exon

AWJ20_4004
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: NUP116
locus tag: AWJ20_4004
product: FG-nucleoporin NUP116
transcript id: XM_018881051.1
SIO_010081: AWJ20_4004
subclass of: SO_0000673
so part of: AWJ20_4004
location: complement(<927802..>928641)
location: region:927802-928641:-1
so has part: feature:927802-928641:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:927802-928641:-1:exon

AWJ20_4004
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: NUP116
locus tag: AWJ20_4004
inference: similar to AA sequence:KEGG_Orthology:K14297
codon start: 1
product: FG-nucleoporin NUP116
translation: MFGNTNRVGGFGTSNTTNTTGSGGLFGSSPSTGAFGSSTTGQATSPFGQAASSTGGTGLFGQTTNNSGGGLFGSSTSGQTSNVFGSANSANNASSTSPFGQANTGASGGLFGATKPTTGFGGFSNTATNSSPFGQSTAATSFGSSANNNQNQGTSVVPFEPFSEKDTTKANMSNYYQSITSMPQYQNFSFEVSIRYYIYNGPIIELVLRIYSLKLHKFNHRYGNHKIVQLNCGPTSCFQLTVNGLNGQKISSKFDSLLTHKGIEVSGLSTKSSLWKRWC
SIO_010081: AWJ20_4004
subclass of: SO_0000673
so part of: AWJ20_4004
location: complement(927802..928641)
location: region:927802-928641:-1
so has part: feature:927802-928641:-1:exon

XP_018733679.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:927802-928641:-1:exon

AWJ20_4005
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RAD27
locus tag: AWJ20_4005
so part of: sequence
location: <929516..>930553
location: region:929516-930553:1
so has part: feature:929516-930553:1:exon
subclass of: SO_0000010

30036090
type: Gene
SIO_000068: ncbigene

position:929516:1
position: 929516
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:930553:1
position: 930553
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:929516-930553:1:exon

AWJ20_4005
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RAD27
locus tag: AWJ20_4005
product: multifunctional nuclease RAD27
transcript id: XM_018881052.1
SIO_010081: AWJ20_4005
subclass of: SO_0000673
so part of: AWJ20_4005
location: <929516..>930553
location: region:929516-930553:1
so has part: feature:929516-930553:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:929516-930553:1:exon

AWJ20_4005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RAD27
locus tag: AWJ20_4005
inference: similar to AA sequence:KEGG_Orthology:K04799
note: 5' to 3' exonuclease, 5' flap endonuclease; required for Okazaki fragment processing and maturation, for long-patch base-excision repair and large loop repair (LLR), ribonucleotide excision repair; member of the S. pombe RAD2/FEN1 family; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19699691]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005654 - nucleoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19699691]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0008409 - 5'-3' exonuclease activity [Evidence IEA]; GO_function: GO:0008409 - 5'-3' exonuclease activity [Evidence IDA] [PMID 9166764]; GO_function: GO:0017108 - 5'-flap endonuclease activity [Evidence IEA]; GO_function: GO:0017108 - 5'-flap endonuclease activity [Evidence IDA] [PMID 11825897]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0004527 - exonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA,IEA]; GO_process: GO:0000737 - DNA catabolic process, endonucleolytic [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0043137 - DNA replication, removal of RNA…
codon start: 1
product: multifunctional nuclease RAD27
translation: MSLYQFLIAVRQQDGQQLTNEDGETTSHLIGIFYRTLKIVENGIKPVYVFDGKPPEMKGSELAKRLVRREEAEKQAAELKETGTAEDVSRFERRTVRVSKEQNEEAQKLLKLMGIPFVLAPGEAEAQCAALAAADKVFASASEDMDTLTFGTPFLLRHLTASDQKKMPIAEVNLKKAMEGLEMSKDEFIDLCILLGCDYCDPIRGVGPTTALKLIQEHRSIEKIKAALASKESSKVQIPDDWPYEEVRKLFHSPDVMPPSEIDLKWGVPDVEGLVDFLVKEKGFSEDRVRNAAAKLTKGAKSTPQGRLTDFFKPKPVDPAKAAEMAKRKKAAAAADNKVKKKARK
SIO_010081: AWJ20_4005
subclass of: SO_0000673
so part of: AWJ20_4005
location: 929516..930553
location: region:929516-930553:1
so has part: feature:929516-930553:1:exon

XP_018733680.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:929516-930553:1:exon

AWJ20_4006
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: APN1
locus tag: AWJ20_4006
so part of: sequence
location: <931642..>932619
location: region:931642-932619:1
so has part: feature:931642-932619:1:exon
subclass of: SO_0000010

30036091
type: Gene
SIO_000068: ncbigene

position:931642:1
position: 931642
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:932619:1
position: 932619
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:931642-932619:1:exon

AWJ20_4006
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: APN1
locus tag: AWJ20_4006
product: DNA-(apurinic or apyrimidinic site) lyase APN1
transcript id: XM_018881053.1
SIO_010081: AWJ20_4006
subclass of: SO_0000673
so part of: AWJ20_4006
location: <931642..>932619
location: region:931642-932619:1
so has part: feature:931642-932619:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:931642-932619:1:exon

AWJ20_4006
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: APN1
locus tag: AWJ20_4006
inference: similar to AA sequence:KEGG_Orthology:K10771
note: Major apurinic/apyrimidinic endonuclease; 3'-repair diesterase; involved in repair of DNA damage by oxidation and alkylating agents; also functions as a 3'-5' exonuclease to repair 7,8-dihydro-8-oxodeoxyguanosine; genetically interacts with NTG1 to maintain mitochondrial genome integrity; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11238901]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 7690756]; GO_function: GO:0017005 - 3'-tyrosyl-DNA phosphodiesterase activity [Evidence IDA] [PMID 12397185]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic site) lyase activity [Evidence IEA]; GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic site) lyase activity [Evidence IDA] [PMID 12767225]; GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic site) lyase activity [Evidence IMP,ISS] [PMID 1693433]; GO_function: GO:0008311 - double-stranded DNA 3'-5' exodeoxyribonuclease activity [Evidence IDA] [PMID 16024777]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008081 - phosphoric diester hydrolase activity [Evidence IDA] [PMID 3056935]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0000737 - DNA catabolic process, endonucleolytic [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006284 - base-excision repair [Evidence IDA] [PMID 9295360]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]
codon start: 1
product: DNA-(apurinic or apyrimidinic site) lyase APN1
translation: MHPGSTLGSDKPSAIKQIGDSINEMHGKTEFVKIVLENMTGQDRIVGSNIADLRDIITYVKNKERVGVCIDTCHSFCAGYDLRTENTFNKFWDLFDKTVGYKYLSGIHLNDSKFPFDSKRDVHYNIGLGFLGLEAFRLIMNKEELQNIPLILETPIEHEDGKTPDDDPRADEIALLRWLVGKEKDDKEVLDKSIQLQKLGAKVREKNLLVVDKKKPISSKKPVKNDGTITFAKAKKVKTEVQERNLENQETALESELELKDEQATIVKAEAKDGPDPEVDQTDVAAIGAASVPELSVDDNKLTSRKRATRVSTSTRKTKVRKPSA
SIO_010081: AWJ20_4006
subclass of: SO_0000673
so part of: AWJ20_4006
location: 931642..932619
location: region:931642-932619:1
so has part: feature:931642-932619:1:exon

XP_018733681.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:931642-932619:1:exon

AWJ20_4007
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4007
so part of: sequence
location: <933560..>935002
location: region:933560-935002:1
so has part: feature:933560-935002:1:exon
subclass of: SO_0000010

30036092
type: Gene
SIO_000068: ncbigene

position:933560:1
position: 933560
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:935002:1
position: 935002
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:933560-935002:1:exon

AWJ20_4007
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4007
product: arrestin (or S-antigen), N-terminal domain protein
transcript id: XM_018881054.1
SIO_010081: AWJ20_4007
subclass of: SO_0000673
so part of: AWJ20_4007
location: <933560..>935002
location: region:933560-935002:1
so has part: feature:933560-935002:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:933560-935002:1:exon

AWJ20_4007
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4007
codon start: 1
product: arrestin (or S-antigen), N-terminal domain protein
translation: MTYLHRPQAPPYIETDQTVLADDDNSFDASHNLPEYTSTTTCEITTNPQRSIYDEVLRVSIDTEVVASRRNIFDVGDVLTGSVTVAPIKNMEFYLLLVDLVGTEMSIRGKGYAETRYTRVFSLARYTLSQRTFSGVMEQGSKYKFTYSMIIPDKIPHERCVCGNNQHSQVPPSIGRPFELTTPCGGEHLVSEQFGRILYQVRAKLVKPETLWKSSAPEFWSEGRKYLVIRPSYPPPMLEQLCDVNGKPLRLPVYMSSKSLKKGLVRKTDIGKIELRTSEALDVYLGVPHTNVLNLEVLYTPSPNLSGVFPPPVEIENVSYQVDSLAFSSTQSMVTYPSHESVIMKTDPCTILSKHTLLRQKLTISKPAWTVSTPKDPSEPRSYLTKLTLPFTFPVYHSRVVDTYFSCLTSRQYELIVSVGFGHSIGSHRLTVPVLVSSAKDVTLSVAPSFSSIDTTSNLSTYTDLSIPSYQETFDTVDSS
SIO_010081: AWJ20_4007
subclass of: SO_0000673
so part of: AWJ20_4007
location: 933560..935002
location: region:933560-935002:1
so has part: feature:933560-935002:1:exon

XP_018733682.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:933560-935002:1:exon

AWJ20_4008
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4008
so part of: sequence
location: <937968..>939551
location: region:937968-939551:1
so has part: feature:937968-939551:1:exon
subclass of: SO_0000010

30036093
type: Gene
SIO_000068: ncbigene

position:937968:1
position: 937968
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:939551:1
position: 939551
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:937968-939551:1:exon

AWJ20_4008
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4008
product: hypothetical protein
transcript id: XM_018881055.1
SIO_010081: AWJ20_4008
subclass of: SO_0000673
so part of: AWJ20_4008
location: <937968..>939551
location: region:937968-939551:1
so has part: feature:937968-939551:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:937968-939551:1:exon

AWJ20_4008
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4008
codon start: 1
product: hypothetical protein
translation: MTIRPLDQLTEDPPSYIEPTQPLLEITDQDDPISSATTDLPRYISGTTCEIAPCNTTSIYEPVVGVGIDPSPTRRDPLSLDLGDVITGKVVITPRKSMDFSILLVDLVGEEISLRDRGYSESHHKRVFTVARYEIPHQHISGPLEEGFVYTFTYSLVVPERLPREFCPCGTGNPIHSQLPPSYGLPLENYTPRNHEENEECARVLYRVRARLYKNLRNSREETLKIWAQGHKTVSIRSSLYPPLVLEELKDSNGNILRLPVYSTSKQLSHGLIRKVAIGTVELKTSEPLNIYLNNPSTKLVSLDVIYTPPSDQKSTSPLEIHHVSYKVNALTFASIEAMAEIPSRQSVMSNKKSPVYMSKDNILRQNLTICKPLWRLNENNDSKTKGNSYVTTLKLPFSFPVTNKKVVSTYFSCLTSRQYELTVTVNFGSSIGSHSITIPVLVTNYKSRESSVASVYSVEDISPLRSDASSYFSYSIPTYQESVGSSTASSTGAITPPTPGHNFTWGGGARRIARTCEQAAMIIASI
SIO_010081: AWJ20_4008
subclass of: SO_0000673
so part of: AWJ20_4008
location: 937968..939551
location: region:937968-939551:1
so has part: feature:937968-939551:1:exon

XP_018733683.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:937968-939551:1:exon

AWJ20_4009
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: YPR1
locus tag: AWJ20_4009
so part of: sequence
location: <940062..>940955
location: region:940062-940955:1
so has part: feature:940062-940955:1:exon
subclass of: SO_0000010

30036094
type: Gene
SIO_000068: ncbigene

position:940062:1
position: 940062
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:940955:1
position: 940955
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:940062-940955:1:exon

AWJ20_4009
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: YPR1
locus tag: AWJ20_4009
product: trifunctional aldehyde reductase/carbonyl reductase (NADPH)/glucose 1-dehydrogenase (NADP(+)) YPR1
transcript id: XM_018881056.1
SIO_010081: AWJ20_4009
subclass of: SO_0000673
so part of: AWJ20_4009
location: <940062..>940955
location: region:940062-940955:1
so has part: feature:940062-940955:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:940062-940955:1:exon

AWJ20_4009
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: YPR1
locus tag: AWJ20_4009
note: NADPH-dependent aldo-keto reductase; reduces multiple substrates including 2-methylbutyraldehyde and D,L-glyceraldehyde, expression is induced by osmotic and oxidative stress; functionally redundant with other aldo-keto reductases; protein abundance increases in response to DNA replication stress; YPR1 has a paralog, GCY1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004090 - carbonyl reductase (NADPH) activity [Evidence IDA] [PMID 19016485]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0042843 - D-xylose catabolic process [Evidence IDA] [PMID 12271459]; GO_process: GO:0019568 - arabinose catabolic process [Evidence IDA,IMP] [PMID 12271459]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]
codon start: 1
product: trifunctional aldehyde reductase/carbonyl reductase (NADPH)/glucose 1-dehydrogenase (NADP(+)) YPR1
translation: MAPTLNKQTVTLNDGSKLPVVGYGTYAVTDETNGYDALLEALKKGYRHIDTAFIYNNEEVVGKAVKDSGIPRDEIFIVTKIWNNDHQDPAHALERSLRLMELDYVDLLLIHWPVPQKAEGGETVVDKEWSHVKTWQLLQELPREKVRSIGVSNYDTVLLEELLNAPSTKVLPSVNQVELHPYLPQDKLRDYCQKKKIVLEAYCPLGSGAKLLENPLLKELAEKYEATPAQIALSWGISRGYVVLTKSSTPSRIESNIQTVELSPEDITKITNLSKTHPHRIVVPTWAKGVTFHDDDF
SIO_010081: AWJ20_4009
subclass of: SO_0000673
so part of: AWJ20_4009
location: 940062..940955
location: region:940062-940955:1
so has part: feature:940062-940955:1:exon

XP_018733684.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:940062-940955:1:exon

AWJ20_4010
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4010
so part of: sequence
location: <941544..>943850
location: region:941544-943850:1
so has part: feature:941544-943850:1:exon
subclass of: SO_0000010

30036096
type: Gene
SIO_000068: ncbigene

position:941544:1
position: 941544
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:943850:1
position: 943850
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:941544-943850:1:exon

AWJ20_4010
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4010
product: hypothetical protein
transcript id: XM_018881058.1
SIO_010081: AWJ20_4010
subclass of: SO_0000673
so part of: AWJ20_4010
location: <941544..>943850
location: region:941544-943850:1
so has part: feature:941544-943850:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:941544-943850:1:exon

AWJ20_4010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4010
codon start: 1
product: hypothetical protein
translation: MSTDEGLPPYQVVDERQAWSTNNDNVPASTNAVDGGVTEDKPVSLNLTENTSGGLPTPDQCIAHLALLEAFYMLRFDIANRDGLFGISNSMAEKFTGDEKTRAMASLCEKRWATYLVRAEERFSKWWATLPRESPMPTQSEIIANPTVFSYIPITGTKIPFTRDNLPPADVLMVWHSYMLNPRNYLQDCIRQGMRDVWRTGMPWKALYSCISGDSVYKSSDGAKNNFKNLTGCEWDNLDDPPVKTLQCPNCKVDIQVPWTSGSLGDDLSKPFENSRGYGDKNFAVQCYSCSLYINHPFLRLQKFRTDFLLLATKDVPMPGTLLTRDGYPVSSRPPSESHQSYFFINRLLMFQMNSFDQICDPAITLKEQRQGDLQFEMSSVRKLLEMCLVRRDIVRKVNSGVVNTQKGLINGKIAVRRMMACYWENSSPFSIDLVGAMTRQGTFIEKMHNIDWLHSPTVSSTMKYALIKYSRFMDIIATNPSRVAVPTLDVDLAWHTHQLSPSDYYHYSDKTTHKFIDHDDKIEESKLSDAYEWTCKTYQRLYKEPYSSCMCWYCEAIRETNRSILHSRSDAKVDEKLFNHSDISADPNKNPHISAHNAVQTMVVDTVKRAHLRRKEQKMKQLEKAYMLAQKRAKKKGRNLPDRNYDPYYSSYWGWGYPIIFPLGYAPFFGYPLGGEYLYPSNPACMSADPGAVGNCCNGTCGGNVAQGGCAGMTGACAGGTVGACAGGGGVGGACGGGLGGCGGGGGGGGGCGGGGGGGCGGGGGSC
SIO_010081: AWJ20_4010
subclass of: SO_0000673
so part of: AWJ20_4010
location: 941544..943850
location: region:941544-943850:1
so has part: feature:941544-943850:1:exon

XP_018733685.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:941544-943850:1:exon

AWJ20_4011
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RFA1
locus tag: AWJ20_4011
so part of: sequence
location: complement(<946717..>948507)
location: region:946717-948507:-1
so has part: feature:946717-948507:-1:exon
subclass of: SO_0000010

30036097
type: Gene
SIO_000068: ncbigene

position:946717:-1
position: 946717
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:948507:-1
position: 948507
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:946717-948507:-1:exon

AWJ20_4011
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RFA1
locus tag: AWJ20_4011
product: replication factor A subunit protein RFA1
transcript id: XM_018881059.1
SIO_010081: AWJ20_4011
subclass of: SO_0000673
so part of: AWJ20_4011
location: complement(<946717..>948507)
location: region:946717-948507:-1
so has part: feature:946717-948507:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:946717-948507:-1:exon

AWJ20_4011
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RFA1
locus tag: AWJ20_4011
inference: similar to AA sequence:KEGG_Orthology:K07466
codon start: 1
product: replication factor A subunit protein RFA1
translation: MTELTVCFAEFGRTSNPSEVVPKFPQLKLQVLKVKLIQGAEPSQNRMRLTVSDGVHYSQAIVNLNEEKGGAQSDISVGSVIEVKSYDSHRLQTGKIVFVLYEWDVVGVESPIGHPTSLEANTEAKANDSMSPAPAPVAPVVAPPAPAPVTKPKAKPAAAPGNFTAIIPIDILSPYHNKWTIRARVSNKSDIRTFTNARGEGKLFNVTLVDESGEIRATGFSQQVDAFYDLLQEGKVYYISKCRVQVAKKQFSNVQNDFELVFDRDSQIELCTDEVDVPKIKFDFTSIKDLGTADINGTVDFIGVLKSINPAEQITSKNTGRPYDKRDVVLVDEGDYSIRATFWGKSAVDFSTPLESVIAIKGAKISDFNGRNISILNSSTVSVDPDVPEAHALKGWYSTNGRDKTFEQLPGPSGATSTGNSDDKNRTTIEKVISDQLGMTDQTDYFTIKGTISYIRNENMWYPSCTNADCNKKVIQDTTDEWRCEKCNITIAEPNYRYIISMIVSDSTGQIWVSSFDDIGNIVIGMSAKELYQLQEQDLNGFTEVITKALYKEYVLRCRARKDNYNDQVSVRYSAVRCTPVDYAHETQLLLQQLGI
SIO_010081: AWJ20_4011
subclass of: SO_0000673
so part of: AWJ20_4011
location: complement(946717..948507)
location: region:946717-948507:-1
so has part: feature:946717-948507:-1:exon

XP_018733686.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:946717-948507:-1:exon

AWJ20_4012
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4012
so part of: sequence
location: <952156..>954954
location: region:952156-954954:1
so has part: feature:952156-954954:1:exon
subclass of: SO_0000010

30036098
type: Gene
SIO_000068: ncbigene

position:952156:1
position: 952156
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:954954:1
position: 954954
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:952156-954954:1:exon

AWJ20_4012
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4012
product: hypothetical protein
transcript id: XM_018881060.1
SIO_010081: AWJ20_4012
subclass of: SO_0000673
so part of: AWJ20_4012
location: <952156..>954954
location: region:952156-954954:1
so has part: feature:952156-954954:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:952156-954954:1:exon

AWJ20_4012
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4012
codon start: 1
product: hypothetical protein
translation: MDYNSQPAGGYPQPQTGVAGAGSNRSTAISHNGMPRSRHQQQLEDMLLSPGGGVDSHMDDMIQRPGSRANVNVNGPSNTGPGYLPRSASAMSFGRRISTSSVTSGSGRNSTANNAGFFGWGKKKFSNQDFDDDDDEGGTGAIGKAEDVPDISMNELTGLRDRDRYPTFGGAPGTPGGPTSPGTGVPSNGRTMSISSTMSGGGFDTTPVIPTLRMGSGTAGPQGTGQYRKNLTNSLKQAIRSSDGRLVGLSQSSPGQGPVPGPGYGLSGPNGMSGGNGYPMQQQRPYTQHQRPPSLQNSRPNSDPRLRSLTGPPNHDFIGPPHNGGSARTMSMGGGIGYFPPNANGIVGPSGPGAQGVIGGSPTMSGSQGFGPGPGPNVGLGQGAGRPTQRLSRPPSRLSQQHAPMVTASTMTDPIDLGDLPSLPREPGTNANKSSNSSTNSTDSTVDGTVTTATTMSSVTGSPIKAIPLSAGNNSADLNELRALNKALLDEVRLVTSELADSIRRELGLSTHEDDSSIDNVSISSSNGDNEIIEARQRAQKLVILERELDLERRKRMVAQQKHEVDEQHQLLTSNQYKIIELEKELAEKNRLYANERRESEMLRDNVSALTNEYEELQLETNQLKNGILPELKSHVADLEVLTAAGNPIELLKQIEELKVENKKLQGLVEENSMRGPLGEKIKAVESQRDALREALRSLKERNDHEIRQSTERVRQLEGKLEKEKVITNQMQRKLVQTRSPSAYVALNSPYEVPSSANNHHTLSTSSSSGSLNSGLNGSNNVDVGLASSTGLGQNTGGSGSTLSIPKRRGIGNLPGITPPAMSFSEMRPASPSPVNFEISQDPAWIDYVNPSKLPVSQAHARQFSSTSYSSQASNSPTSETASLFKTPTYRSNASNSPTTGLSASSLSISNGRTEHLPLSLAPAAATATTSS
SIO_010081: AWJ20_4012
subclass of: SO_0000673
so part of: AWJ20_4012
location: 952156..954954
location: region:952156-954954:1
so has part: feature:952156-954954:1:exon

XP_018733687.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:952156-954954:1:exon

AWJ20_4013
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SAS10
locus tag: AWJ20_4013
so part of: sequence
location: <970817..>972613
location: region:970817-972613:1
so has part: feature:970817-972613:1:exon
subclass of: SO_0000010

30036099
type: Gene
SIO_000068: ncbigene

position:970817:1
position: 970817
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:972613:1
position: 972613
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:970817-972613:1:exon

AWJ20_4013
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SAS10
locus tag: AWJ20_4013
product: Sas10p
transcript id: XM_018881061.1
SIO_010081: AWJ20_4013
subclass of: SO_0000673
so part of: AWJ20_4013
location: <970817..>972613
location: region:970817-972613:1
so has part: feature:970817-972613:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:970817-972613:1:exon

AWJ20_4013
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SAS10
locus tag: AWJ20_4013
inference: similar to AA sequence:KEGG_Orthology:K14767
note: Subunit of U3-containing Small Subunit (SSU) processome complex; involved in production of 18S rRNA and assembly of small ribosomal subunit; disrupts silencing when overproduced; mutant has increased aneuploidy tolerance; essential gene; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9611201]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12068309]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12837249]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]
codon start: 1
product: Sas10p
translation: MARKSRGINTSSRRDERDEEELDLDEIDQFHKNQEEILLDQAGLARKGRSGLDEEMEMSDEEVLGLDNDEEEDEEDMEMDDDALYGGNNEEDEEEEGWGSSKNNYYGADEPQDEESAKQEEQEALRLQKAHLAELAEDDYYEDEDLDEWKESAMATESDLLDSTGGVHHEALPEQDPTLLSETERLNLLQTWYPEVLPFIGELEKYSGLLESLKKTVKESENKIASIKFAALSSYLGTLSAYFALFVGTIENGKVSLKDHDVVKGILKARELWRLASNLDDEQDESVKNKSKSNSGSSVAVTNASSSDTADDTIWQSASEGYSSEDETATINSKSSATKRKRAALDRNESGSDSDSEFSVGAPVVKHVKRTRGIKSDYREEDIDEVSIADKLARKKSLRFYTSKIDQQTNKANNGREKFSGDADLPYKERHFERQQRLMEEARKRGLKTSGGAYDPADDFGSDDDNDRSTAKLVNDGFSEDYYNTIKAASEKRKEEKRNNHLLAKQAAKEGRLEELASELATDGDKRAINYQILKNKGLTPKRNKDNRNSRVKKRKRYEAAKKKLPSVRQVYKAPTSSYQGEQTGIKKNLIRSVRFAN
SIO_010081: AWJ20_4013
subclass of: SO_0000673
so part of: AWJ20_4013
location: 970817..972613
location: region:970817-972613:1
so has part: feature:970817-972613:1:exon

XP_018733688.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:970817-972613:1:exon

AWJ20_4014
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4014
so part of: sequence
location: <973080..>973805
location: region:973080-973805:1
so has part: feature:973080-973805:1:exon
subclass of: SO_0000010

30036100
type: Gene
SIO_000068: ncbigene

position:973080:1
position: 973080
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:973805:1
position: 973805
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:973080-973805:1:exon

AWJ20_4014
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4014
product: hypothetical protein
transcript id: XM_018881062.1
SIO_010081: AWJ20_4014
subclass of: SO_0000673
so part of: AWJ20_4014
location: <973080..>973805
location: region:973080-973805:1
so has part: feature:973080-973805:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:973080-973805:1:exon

AWJ20_4014
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4014
codon start: 1
product: hypothetical protein
translation: MSSSKAFKSHYEQDERWTAVDEYTNGHLHNPDTHGNSKVLSEALSNSIDKGLPDISTFPSYGKLLALQAKLAGADYALEVGTLGGYTSIWLATENPNIKIVTLEVNQHHADVALENLRRAGVADRVEIIVGPALETLPKLAEEIAAGKRQKFGFTFIDADKTNNWNYFDWAVKISRSRAVIVVDNVVRNGTIVAKEKLNDPNVSGARNVIERVGKDNRVDAVVQQTVGEKNYDGFLLAIVK
SIO_010081: AWJ20_4014
subclass of: SO_0000673
so part of: AWJ20_4014
location: 973080..973805
location: region:973080-973805:1
so has part: feature:973080-973805:1:exon

XP_018733689.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:973080-973805:1:exon

AWJ20_4015
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: AIM2
locus tag: AWJ20_4015
so part of: sequence
location: <976058..>976879
location: region:976058-976879:1
so has part: feature:976058-976879:1:exon
subclass of: SO_0000010

30036101
type: Gene
SIO_000068: ncbigene

position:976058:1
position: 976058
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:976879:1
position: 976879
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:976058-976879:1:exon

AWJ20_4015
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: AIM2
locus tag: AWJ20_4015
product: protein AIM2
transcript id: XM_018881063.1
SIO_010081: AWJ20_4015
subclass of: SO_0000673
so part of: AWJ20_4015
location: join(<976058..976133,976176..>976879)
location: region:976058-976879:1
so has part: feature:976058-976133:1:exon
so has part: feature:976176-976879:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:976058-976133:1:exon

position:976133:1
position: 976133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:976176-976879:1:exon

position:976176:1
position: 976176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

AWJ20_4015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: AIM2
locus tag: AWJ20_4015
codon start: 1
product: protein AIM2
translation: MRKPAITPRPAGALPQTPLLFWLGTTGESVGRLIDLNGVETYISGEKNASSKKAVLFLTDVFGHKYINNQLLADEYAKAGYLVVVPDLFKGDPRSPDSVPGADPNELRTKWLPNHTPEITRPIVEKAVEGLKKEYSPEFVGTVGYCFGARYVLQQLATDNVNAGAIAHPSGVTIEDVRAVRKPLLIIGAETDGAYTPELQKQTEDVLREIKATYFTTLASGVSHGFAVRGDITNPIVKFAKEKALRDTVDWFNAFNSRK
SIO_010081: AWJ20_4015
subclass of: SO_0000673
so part of: AWJ20_4015
location: join(976058..976133,976176..976879)
location: region:976058-976879:1
so has part: feature:976058-976133:1:exon
so has part: feature:976176-976879:1:exon

XP_018733690.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:976058-976133:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:976176-976879:1:exon

AWJ20_4016
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: mei2
locus tag: AWJ20_4016
so part of: sequence
location: <977848..>979965
location: region:977848-979965:1
so has part: feature:977848-979965:1:exon
subclass of: SO_0000010

30036102
type: Gene
SIO_000068: ncbigene

position:977848:1
position: 977848
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:979965:1
position: 979965
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:977848-979965:1:exon

AWJ20_4016
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: mei2
locus tag: AWJ20_4016
product: RNA-binding protein involved in meiosis Mei2
transcript id: XM_018881064.1
SIO_010081: AWJ20_4016
subclass of: SO_0000673
so part of: AWJ20_4016
location: <977848..>979965
location: region:977848-979965:1
so has part: feature:977848-979965:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:977848-979965:1:exon

AWJ20_4016
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: mei2
locus tag: AWJ20_4016
codon start: 1
product: RNA-binding protein involved in meiosis Mei2
translation: MNSLELTRYSLNASVSGPSLDTSSGRIVSTCLRHSSSGNDANNSPVRFAVGHEVHMATSEGKFGSIQTGVQAVDSSQPGINSRADSLRQIPISDYISCGMHEKTREPSPTSTSLRSLWFSGPQPVSSSESSRPFNPIGFGSNIYPRDESLSPCQNNHTLFSLGSVIDSLGLVSGPLVRLEHRIEPIDTSSICADSERQTRLVKVSNLPINPTDQNTVSFSLSPQSVLESCIAAGGTVPGSTFIEGSTVVALYYDLRDSVRLVDKLRERLAESNRSSHRVTGNWANIQVAFIPVHEFDIVYRASTFLEHLALHKKVAVHLVIKENMRYCGYTTESIGQILTKSIGDIRYIRKLPTTYAVVFVCEFFDIRARLNCINATREESSTLPFYCLSSYSSENNMVKSTEAVSGVSQNQEQQLQPNENICYPHHQLNKSGTIASKPPISIYSTNSPTSASKRSFASVASSGLNRNNEFVLRGSSDHSGIRPVPDLSGKTLKGKGNENPFGISQKHFGFQIVDQNSRNGDSTSWEDSQEQIISTTATDTTLPAPIASSSPVLAPKSVAPLLTTILSPLSSSQMNRMNADTTSGISGSIVTRAAVPSKSIIDLDRIEQGLDTRKTIMIRNIPNKIDQQMLKEYIDVTNRNTYDFLYLRIDFNNKCNVGYAFISFIDPRHIITFARARAGTRWNKFNSAKICDMSYAAIYVESPL
SIO_010081: AWJ20_4016
subclass of: SO_0000673
so part of: AWJ20_4016
location: 977848..979965
location: region:977848-979965:1
so has part: feature:977848-979965:1:exon

XP_018733691.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:977848-979965:1:exon

AWJ20_4017
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: HSL7
locus tag: AWJ20_4017
so part of: sequence
location: <981659..>983995
location: region:981659-983995:1
so has part: feature:981659-983995:1:exon
subclass of: SO_0000010

30036103
type: Gene
SIO_000068: ncbigene

position:981659:1
position: 981659
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:983995:1
position: 983995
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:981659-983995:1:exon

AWJ20_4017
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: HSL7
locus tag: AWJ20_4017
product: Hsl7p
transcript id: XM_018881065.1
SIO_010081: AWJ20_4017
subclass of: SO_0000673
so part of: AWJ20_4017
location: <981659..>983995
location: region:981659-983995:1
so has part: feature:981659-983995:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:981659-983995:1:exon

AWJ20_4017
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: HSL7
locus tag: AWJ20_4017
inference: similar to AA sequence:KEGG_Orthology:K02516
note: Protein arginine N-methyltransferase; exhibits septin and Hsl1p-dependent bud neck localization and periodic Hsl1p-dependent phosphorylation; required along with Hsl1p for bud neck recruitment, phosphorylation, and degradation of Swe1p; relocalizes away from bud neck upon DNA replication stress; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 10490648]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 10805747]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0032174 - cellular bud neck septin collar [Evidence IDA] [PMID 23389636]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_function: GO:0008469 - histone-arginine N-methyltransferase activity [Evidence IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0035241 - protein-arginine omega-N monomethyltransferase activity [Evidence IDA] [PMID 16426232]; GO_function: GO:0035241 - protein-arginine omega-N monomethyltransferase activity [Evidence IDA] [PMID 18515076]; GO_function: GO:0035243 - protein-arginine omega-N symmetric methyltransferase activity [Evidence IDA] [PMID 18515076]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IGI,IMP] [PMID 10490630]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0044257 - cellular protein catabolic process [Evidence IMP] [PMID 23042131]; GO_process: GO:0034969 - histone arginine methylation [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0006479 - protein methylation [Evidence IEA]; GO_process: GO:0051726 - regulation of cell cycle [Evidence IMP] [PMID 8647431]
codon start: 1
product: Hsl7p
translation: MSDGTSTTSTVSMKPPLFVGVNLPAKHGVSDHLVVEAALDQGYDMVTSRLTSRSYRKRIQALFHELEMVTPSPDEHLGNQGSNNNHGAFSFSQHQASHSHSHSYPHRIFSDGADLSPYNSPSMSHSNGVNGARDTAIVSRQSSEPPIQQLPTGTLVEAEIPAPELEDVVVHPGDHVSNTIALAAPWVEIDSKNPRVANLSLQVLSHELKYATFCGLPYVIISGPKRRTNVIQYAQALNTLLMANPTLQVSIHLPLTEEFTKSATLVPPSDYLSIWEVWNTIRNTCNYPHNISVALQLPRHTLPDYVVNRWFAEPVSMIIVSSRSFVRNAKGYPVLPKSSQTVLNKFFKKNPFLIIEDPQDSTSFVGGDTAFLLYLRHLYQTSPPPSIIEGFAAGYTDYLQAPLQPLIDNLDSAMYEVFERDPIKYNQYEKAIFHALLDRPGKEVVIGVVGAGRGPLIDRVLKAASAANRTVKVLALEKNDSAYIYLLKRQAQDWGSAVQIIRGDMRTWVPPPNTPAVNILVSELLGSFGDNELSPECLDGAQRLLDPVNGITIPSSYSSHITPIFSPKLFASAWSLSAANSSGSQSGNGPATNSHSIASIRASRPGMCSADALHSPYVVMMEQVDFVSEKIIQAWTFTHPIQNMLPNNQHNVRKCKATFPVPHKTVVHGIAGYFEAVLYKDIHLSIRPDTIEAKSKDMVSWFPIWFPLSQPLVLGDDSEVDVSIWRLSDGRSVWYEWAAEGYATVTMPDTGRGTSVRRIRSGSTAFHNSGGKYSSMTL
SIO_010081: AWJ20_4017
subclass of: SO_0000673
so part of: AWJ20_4017
location: 981659..983995
location: region:981659-983995:1
so has part: feature:981659-983995:1:exon

XP_018733692.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:981659-983995:1:exon

AWJ20_4018
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RRP5
locus tag: AWJ20_4018
so part of: sequence
location: complement(<990502..>993891)
location: region:990502-993891:-1
so has part: feature:990502-993891:-1:exon
subclass of: SO_0000010

30036104
type: Gene
SIO_000068: ncbigene

position:990502:-1
position: 990502
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:993891:-1
position: 993891
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:990502-993891:-1:exon

AWJ20_4018
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RRP5
locus tag: AWJ20_4018
product: Rrp5p
transcript id: XM_018881066.1
SIO_010081: AWJ20_4018
subclass of: SO_0000673
so part of: AWJ20_4018
location: complement(<990502..>993891)
location: region:990502-993891:-1
so has part: feature:990502-993891:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:990502-993891:-1:exon

AWJ20_4018
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RRP5
locus tag: AWJ20_4018
inference: similar to AA sequence:KEGG_Orthology:K14792
note: RNA binding protein involved in synthesis of both 18S and 5.8S rRNAs; component of both the ribosomal small subunit (SSU) processosome and the 90S preribosome; acts as part of a Mak21p-Noc2p-Rrp5p module that associates with nascent pre-rRNA during transcription and has a role in bigenesis of the large ribosomal subunit; has binding preference for single stranded tracts of U's; relocalizes from nucleolus to nucleus upon DNA replication stress; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 8896463]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0008266 - poly(U) RNA binding [Evidence IDA] [PMID 16428605]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 8896463]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 8896463]; GO_process: GO:0000464 - endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 8896463]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 8896463]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:004…
codon start: 1
product: Rrp5p
translation: MKTPGSIVVLQPKGAVVEFFGGVRGYLPVAEISEAFIKDPKDHFRLGQSVAVRVLSVDPEAERLLVSCRTDSSNSQAQLESLGPGTVVSASIVEKTKDGVVVNVEPQNVRGVIPLGHLTDGNDTRAQMKSLKVGENLESLVILERNFSKRFVMLSAKKSLVEDARAGKFPSDISQISVGDKLHGYVKNATIKGLFVGFAGSLTGLALKQDLSTEFVSDPAEKFSPMQSVECYVVNIDDAIGRFQLSLLAPKPKTLKKETSSGGFTPVDEAVTSIDEFVPGKITKAQIVSVKETQLNVKLAENVQGRIDVSQIYDDYKSIPNSKDPLGEFKKGEIVDVKIIGYHDARNHTFLAISHRSASHLVYELSAKKSDLNSSSYKPLTLEDVKVGSSWLAFINNLTVDFAWVNLSPTVRGRIPLFDLTNNADELEDVEAHYPIGSAIECSVIEVDIKTSNLKLSVRAHNGTAVNDYSDVKVGQTLPTLVTKVTETLVFVKLGANISGAAYISDALDDYSADLKLTYLPHQLVKAKIIDVDTSNKRISVTLRPSQTEKDAEKPVDQHIQSIEDVQKGSIVRAFVKNVADKGLFVSLGRNITARIQIKNLSDSYLKDWKKYYTVGQVVTGKVLSVDEHNSRVELSLKESAVTGKDPREVSGLGSINENDIFDGVITKVEDFGVFVKLDGTSITGLCHKSEVADVPLQDMSKVFSEGDKVKAKILKIDTEKRRVSLGLKASYFTELESDVEMEEFDVNNDEDDDDDDELDNSVAFEDDSEEEEEGDESDDESDEDNGIAVTASKKSSNGLSVGFDWTGTNVLDEMNTKEDGDDNEDDDSSNEEEGRSRKRRKRSKFVEDKTGTLNTKLPQSIQDFERLLVGSPNSSIMWMNYMAFQLQLSEIEKAREIAQRALKTINFREEQERLNVWIALLNLENSFGTNQTAEDTFKEAIQFMDSKTIHMKYAGILSQSEGKAKKAEELYDVAMKKFGGEDMSIWITYANFLFDHDNAAKARSLLDRSLRMLPARNHKEIITKFAQLEYTKGEAERGRTLFEGLISSYPRRIDLWIVYLDYEIKNGDKETVEKLFERVIGVKLTMKQAKFFFKKWLGFEDKLGDSKKVDYVKAKASEYVSSRTEQEE
SIO_010081: AWJ20_4018
subclass of: SO_0000673
so part of: AWJ20_4018
location: complement(990502..993891)
location: region:990502-993891:-1
so has part: feature:990502-993891:-1:exon

XP_018733693.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:990502-993891:-1:exon

AWJ20_4019
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RRP5
locus tag: AWJ20_4019
so part of: sequence
location: complement(<994013..>995830)
location: region:994013-995830:-1
so has part: feature:994013-995830:-1:exon
subclass of: SO_0000010

30036105
type: Gene
SIO_000068: ncbigene

position:994013:-1
position: 994013
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:995830:-1
position: 995830
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:994013-995830:-1:exon

AWJ20_4019
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RRP5
locus tag: AWJ20_4019
product: Rrp5p
transcript id: XM_018881067.1
SIO_010081: AWJ20_4019
subclass of: SO_0000673
so part of: AWJ20_4019
location: complement(join(<994013..995530,995642..>995830))
location: region:994013-995830:-1
so has part: feature:995642-995830:-1:exon
so has part: feature:994013-995530:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:995642-995830:-1:exon

position:995642:-1
position: 995642
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:994013-995530:-1:exon

position:995530:-1
position: 995530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

AWJ20_4019
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RRP5
locus tag: AWJ20_4019
inference: similar to AA sequence:KEGG_Orthology:K14792
note: RNA binding protein involved in synthesis of both 18S and 5.8S rRNAs; component of both the ribosomal small subunit (SSU) processosome and the 90S preribosome; acts as part of a Mak21p-Noc2p-Rrp5p module that associates with nascent pre-rRNA during transcription and has a role in bigenesis of the large ribosomal subunit; has binding preference for single stranded tracts of U's; relocalizes from nucleolus to nucleus upon DNA replication stress; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 8896463]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0008266 - poly(U) RNA binding [Evidence IDA] [PMID 16428605]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 8896463]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 8896463]; GO_process: GO:0000464 - endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 8896463]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 8896463]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:004…
codon start: 1
product: Rrp5p
translation: MSFKRKRDEESAGVAPVSQPPSALRMEDTAFPRGGASTVLTPLEIKQATNEATRDLFTVRFYWASESNAANGKKKSKKQHRNKVHQKSEAGSDKAGEKHKIKVESLSFGKLTAGSVVLGQVVQINTLDIALSLPNNLLGYVPITNISAKLSERISKAEDDDESGSEDEDNEDSDLPQLSQLFKVGQWLRALVVENEKVNNKKRIELSIDPLQVNEEIETDDLVAGIAVQGSVQSVEDHGIIVDIGRDDVSGFLSNKELSHAGIEASSLGVGQVLLLTILSKSANGRTVTLTASATAKKMTIVKAVTLNKSLLAGTLVEVLITDIRSNGLVGKVFGSIDATIDIVHSGIYDRAVLEQNFKEGKVVKGRVIYSPPAAVSESDDENSTKVFVSLLETTIELKVAEDGDALPIGQILEAKVKIVDANGLYVDIGTKSLGFVHVSRVADKRIEDLSIEEAYSVGTTHPARILNYNYADNLYIVSTEKSVIEQKYLRVEDVSVGEKVTGTVDRILPKGGVLIKLWEGFSGIANDIHLSDIKLAHPEKKFKPGMKVTARVSSIICFKVDCGYLRY
SIO_010081: AWJ20_4019
subclass of: SO_0000673
so part of: AWJ20_4019
location: complement(join(994013..995530,995642..995830))
location: region:994013-995830:-1
so has part: feature:995642-995830:-1:exon
so has part: feature:994013-995530:-1:exon

XP_018733694.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:995642-995830:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:994013-995530:-1:exon

AWJ20_4020
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MXR1
locus tag: AWJ20_4020
so part of: sequence
location: <996712..>997326
location: region:996712-997326:1
so has part: feature:996712-997326:1:exon
subclass of: SO_0000010

30036107
type: Gene
SIO_000068: ncbigene

position:996712:1
position: 996712
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:997326:1
position: 997326
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:996712-997326:1:exon

AWJ20_4020
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MXR1
locus tag: AWJ20_4020
product: Mxr1p
transcript id: XM_018881069.1
SIO_010081: AWJ20_4020
subclass of: SO_0000673
so part of: AWJ20_4020
location: <996712..>997326
location: region:996712-997326:1
so has part: feature:996712-997326:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:996712-997326:1:exon

AWJ20_4020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MXR1
locus tag: AWJ20_4020
inference: similar to AA sequence:KEGG_Orthology:K07304
note: Methionine-S-sulfoxide reductase; involved in the response to oxidative stress; protects iron-sulfur clusters from oxidative inactivation along with MXR2; involved in the regulation of lifespan; reduced activity of human homolog implicated in Alzheimer disease; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 20799725]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016671 - oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [Evidence IEA]; GO_function: GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA,IEA]; GO_function: GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IDA,IMP] [PMID 15141092]; GO_function: GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IDA,IMP,ISS] [PMID 9275166]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI,IMP] [PMID 11929995]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 9275166]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0030091 - protein repair [Evidence IEA]; GO_process: GO:0006979 - response to oxidative stress [Evidence IEA]
codon start: 1
product: Mxr1p
translation: MASGNFFPKLLVRLLSSSSPKMSATKISPTLDTVGYQVATVGAGCFWGVEHIYRKHFGNGKGLIDARVGYSGGTTTNPSYKQVCTSGTGHAEALQITFDPSLVTYDTLIDFFFRMHDPTQLNRQGPDQGTQYRSVIFTHDDEQQKVAEEVKERMQKTFYKDPIVTKIEPIEAFWDAETYHQLYLHKNPTGYECPSHYVRTKPQL
SIO_010081: AWJ20_4020
subclass of: SO_0000673
so part of: AWJ20_4020
location: 996712..997326
location: region:996712-997326:1
so has part: feature:996712-997326:1:exon

XP_018733695.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:996712-997326:1:exon

AWJ20_4021
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4021
so part of: sequence
location: <999749..>1000363
location: region:999749-1000363:1
so has part: feature:999749-1000363:1:exon
subclass of: SO_0000010

30036108
type: Gene
SIO_000068: ncbigene

position:999749:1
position: 999749
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1000363:1
position: 1000363
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:999749-1000363:1:exon

AWJ20_4021
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4021
product: hypothetical protein
transcript id: XM_018881070.1
SIO_010081: AWJ20_4021
subclass of: SO_0000673
so part of: AWJ20_4021
location: <999749..>1000363
location: region:999749-1000363:1
so has part: feature:999749-1000363:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:999749-1000363:1:exon

AWJ20_4021
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4021
codon start: 1
product: hypothetical protein
translation: MAVVGISGYAVYAFDVLVAHLEGRAPVTLAQCLAAVPGSPPLTGKSPLFVTWNTIAKDGDASLRGCIGTFQEEELESGVASYSLTAALEDPRFRPIQKRELPHLECGVTILKNFESAANPMDWEIGVHGIKGVFTHRGRRTSATFLPDVAVEQGWDKETTLVYLADKANAHPDSTISLTRYQGEKSAIRYEEYLDILKQIDARE
SIO_010081: AWJ20_4021
subclass of: SO_0000673
so part of: AWJ20_4021
location: 999749..1000363
location: region:999749-1000363:1
so has part: feature:999749-1000363:1:exon

XP_018733696.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:999749-1000363:1:exon

AWJ20_4022
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4022
so part of: sequence
location: complement(<1001193..>1002584)
location: region:1001193-1002584:-1
so has part: feature:1001193-1002584:-1:exon
subclass of: SO_0000010

30036109
type: Gene
SIO_000068: ncbigene

position:1001193:-1
position: 1001193
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1002584:-1
position: 1002584
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1001193-1002584:-1:exon

AWJ20_4022
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4022
product: hypothetical protein
transcript id: XM_018881071.1
SIO_010081: AWJ20_4022
subclass of: SO_0000673
so part of: AWJ20_4022
location: complement(<1001193..>1002584)
location: region:1001193-1002584:-1
so has part: feature:1001193-1002584:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1001193-1002584:-1:exon

AWJ20_4022
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4022
inference: similar to AA sequence:KEGG_Orthology:K01443
codon start: 1
product: hypothetical protein
translation: MPRISTSTPNTSGYVDSDADDSLVSPNSPSSVFSQEDKFLTGVTAPIIRFINATLCEEGKSYPNSQLWVDAESGVILKSSIDTEFSDDQEPSPEEVTTIDLNGDILSPGFIDAQLNGAFGMDFCDVNYGDGSIKAFEEGVAYIGRQLFKTGVTSYCPTLPSTYPHVYQKVLPSLKPKRISTAAESLGYHLEGPFLSPKKPGCHPRDAIVTAPKHFQSFEEIYGADNIDGAAIITLAAEQEGVMESIPDLTKRGITVSLGHSVLDYDGGCKAVNLGAKMITHVYNAMTQPHHREPGLFGLLGAPNKDLPDSSCQLTKPYYGIIVDGVHVHRSGVAVAYHAHPEGCCLVTDAMFPMGLPSGTYTWGEQTIVKDDLLLFLNGTNTIAGSGVELDTCLRNLMAWAEIPIETALKTVTTHPARVLGVENKKGTLRAKADADLTILDAAGNIKHVYKLGQCVYRAADKK
SIO_010081: AWJ20_4022
subclass of: SO_0000673
so part of: AWJ20_4022
location: complement(1001193..1002584)
location: region:1001193-1002584:-1
so has part: feature:1001193-1002584:-1:exon

XP_018733697.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1001193-1002584:-1:exon

AWJ20_4023
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4023
so part of: sequence
location: <1004474..>1007383
location: region:1004474-1007383:1
so has part: feature:1004474-1007383:1:exon
subclass of: SO_0000010

30036110
type: Gene
SIO_000068: ncbigene

position:1004474:1
position: 1004474
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1007383:1
position: 1007383
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1004474-1007383:1:exon

AWJ20_4023
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4023
product: hypothetical protein
transcript id: XM_018881072.1
SIO_010081: AWJ20_4023
subclass of: SO_0000673
so part of: AWJ20_4023
location: <1004474..>1007383
location: region:1004474-1007383:1
so has part: feature:1004474-1007383:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1004474-1007383:1:exon

AWJ20_4023
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4023
inference: similar to AA sequence:KEGG_Orthology:K01207
codon start: 1
product: hypothetical protein
translation: MDFEFSDQLPVQLTELGKAIGQMFLVGFAEDYVTDETRELITKYHIGSIMLRAKNLRDAETTRNLILELQQIAHDAGHEHPLLIAIDQENGMLNNLNDEEYLSQFPGPMAIVATKSLNLARQVAHATGQQLKSLGVNWLLGPVLDVLTNSTNRLLGVRTMGDDAQEVTRFSLAFMEGYESAGICQCGKHFPGYGNATVDSTVSLPVVPESIEQLETSSLIPFREAIKANIDAIMVGGCALPKIAMNEMHACLSERVVRELLREDMGYDGVIVSECLEMDALYENVGVRQGAVMTAIAGCDVVLVCSSYRLQIEAISGIFGAVTSGILEHEAIYNSAKRVAKLKSKHLSWQEALNPKPLSYLKELKKTHLQLSKTAYQQSITLVRDHSKCIPLSESIERDSDIVLLTPLVTPLVSTKHDANLDHLLLGENVFQEFGRSLARLHTGKVLHASYTANGVISMHDQLIERAQAVIIVTTDAHRNMYQVGFTKHVGIICAQQRKPVIAIAASSPYDLALDRAIGTYLCLYEFTNEALDTTAKVLFGQLPARGHFPGSGLYQRTQNRPTTNGNRTNRNKWLVEKWSHERDMKRLKTLWENCFSDRHLGPGVGGAFQLLLTSGQTHFIVRNSSTNNLYGFCATWVYEKQGIGCIAMIFVEPSRRGMSIGRSLHDRAVKYLIRERNVSSVKIGCSIPSFFHGIPTNNYGPLMKWFQEAGWVIDVNLAQVLAADSSDTDPILPQQTFNSTYPQPTNSISHPHSGHSALHLTDGSIDLGDTVSNPTDGSTITVLSTMLLTSLSEWSPSKTLIRQLEVLGIKFDICLNEDRFSEIMAFANSPKYAQFEGLTELYREALSSGDSKIIVALDPVKKTVVGSIILFTRGSSIASYMPWIVEFEDARVGGLCGVITDPQYNKELESVFNCGLVGCGVRQFKLQGFERCVIDRATGHQAEGYAENGFYTLRRYLQVSNVAQSFVV
SIO_010081: AWJ20_4023
subclass of: SO_0000673
so part of: AWJ20_4023
location: 1004474..1007383
location: region:1004474-1007383:1
so has part: feature:1004474-1007383:1:exon

XP_018733698.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1004474-1007383:1:exon

AWJ20_4024
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: HXK2
locus tag: AWJ20_4024
so part of: sequence
location: <1009856..>1011643
location: region:1009856-1011643:1
so has part: feature:1009856-1011643:1:exon
subclass of: SO_0000010

30036111
type: Gene
SIO_000068: ncbigene

position:1009856:1
position: 1009856
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1011643:1
position: 1011643
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1009856-1011643:1:exon

AWJ20_4024
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: HXK2
locus tag: AWJ20_4024
product: hexokinase 2
transcript id: XM_018881073.1
SIO_010081: AWJ20_4024
subclass of: SO_0000673
so part of: AWJ20_4024
location: <1009856..>1011643
location: region:1009856-1011643:1
so has part: feature:1009856-1011643:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1009856-1011643:1:exon

AWJ20_4024
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: HXK2
locus tag: AWJ20_4024
inference: similar to AA sequence:KEGG_Orthology:K00844
note: Hexokinase isoenzyme 2; catalyzes phosphorylation of glucose in the cytosol; predominant hexokinase during growth on glucose; functions in the nucleus to repress expression of HXK1 and GLK1 and to induce expression of its own gene; antiapoptotic; phosphorylation/dephosphorylation at serine-14 by protein kinase Snf1p and protein phosphatase Glc7p-Reg1p regulates nucleocytoplasmic shuttling of Hxk2p; HXK2 has a paralog, HXK1, that arose from the whole genome duplication; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11311123]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9563516]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16962558]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11311123]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9563516]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004396 - hexokinase activity [Evidence IEA,IEA]; GO_function: GO:0004396 - hexokinase activity [Evidence IDA] [PMID 12611889]; GO_function: GO:0004396 - hexokinase activity [Evidence IDA] [PMID 332086]; GO_function: GO:0004396 - hexokinase activity [Evidence IMP] [PMID 6341351]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0046835 - carbohydrate phosphorylation [Evidence IEA,IEA]; GO_process: GO:0032445 - fructose import [Evidence IGI] [PMID 6300872]; GO_process: GO:0006000 - fructose metabolic process [Evidence IMP] [PMID 6300872]; GO_process: GO:0046323 - glucose import [Evidence IGI] [PMID 6300872]; GO_process: GO:0006006 - glucose metabolic process [Evidence IMP] [PMID 6300872]; GO_process: GO:0006096 - glycolytic pr…
codon start: 1
product: hexokinase 2
translation: MNTIVPLSTRGPSSPEGSITASTTSTTPSSSPPSSSKSAPSSAGFLSPPASPQPEKHAASGIMGSSTVSTSTTTARTSSRTATKSNLISGTVLDGLNDNLHRLVTPALSPTSSDRNNDENVHEIDHEIDISLPTPVSSTGDHFKLFASSYDLLSLDAVAKRTTSHLTRVLGTNHHTPTMIPTCMTCLPSGKEIGTFLSVDLGGSTFRVAFVCLKGPGKQSEIVYMSVVPVPDSVKQGSGNDFFLWMAHEVKKGVDKVLPNQPKSVPINMGISWSFPFVQTAMHTAIIEKMGKGYNVADEISGWNLGKSFENAFEKLDLNIKVTAIVNDGGACMISRAYADNATKISLILGTGINAGIMVPSHLIGEAKLESIASGKPAPTYMINTEISMLDDTIVPASIWDVELDAAIERPGFQPLETKVSGRYLGEISRLIIRDLVLNNTLCGGILPEKLDVPYSLESSLMSDIEEHFRNSRLDLARDAFLRAHPHPYLSDSDLDQICDVFVNVSNRSAAFTAAVLVGLADIIYQNTAHSSAESQSCIISYTGTVIEKYPLFRKRCQQFLDSLCASRGIQLRLESSENGSIFGPVIAAAMNHCN
SIO_010081: AWJ20_4024
subclass of: SO_0000673
so part of: AWJ20_4024
location: 1009856..1011643
location: region:1009856-1011643:1
so has part: feature:1009856-1011643:1:exon

XP_018733699.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1009856-1011643:1:exon

AWJ20_4025
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_4025
so part of: sequence
location: complement(<1013454..>1015280)
location: region:1013454-1015280:-1
so has part: feature:1013454-1015280:-1:exon
subclass of: SO_0000010

30036112
type: Gene
SIO_000068: ncbigene

position:1013454:-1
position: 1013454
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1015280:-1
position: 1015280
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1013454-1015280:-1:exon

AWJ20_4025
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_4025
product: 1-phosphatidylinositol-4-phosphate 5-kinase
transcript id: XM_018881074.1
SIO_010081: AWJ20_4025
subclass of: SO_0000673
so part of: AWJ20_4025
location: complement(<1013454..>1015280)
location: region:1013454-1015280:-1
so has part: feature:1013454-1015280:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1013454-1015280:-1:exon

AWJ20_4025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_4025
inference: similar to AA sequence:KEGG_Orthology:K00889
note: Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]
codon start: 1
product: 1-phosphatidylinositol-4-phosphate 5-kinase
translation: MGAFFLTNGDYRPSNGTHKVPRHPVLSDVHCGVSVPKYGACAQLENRRPARRSAFAYHKVLILECSPDDSGVSVGSDETLNEPTVWKPIDIVSEQAYCNSAPIDNDDDNSSEWSFETEDEAAFTTRQIETASSKEDTEATWSAPAASWALSDCPIEIDENDFTPESHGEVTLAESPLETSHSDLAESEVITPAKVDEQTTWPTADAPAPTIEGSCSIDSLVAEIIAVANLFKDLPQLIVSGGLQAGPESELPKTAPLALSKPIAQTPSDDLVIQVEEVDKSKTPLLLTRAKAKLTSFIGHAAPISKSTLMFNGVQTATYATPLSSQEALSMENKKYRLDGGAIIKVYSPTVYQNIRTLCGIDYHEFLNSFVLQSDLTKTKSPGKSGSDFLFTPDGKYIIKTIKRKEHNVIANADFLADYYNHVKAHPGTQLPFYLGNYTLVAGGKKTHFVIMKNLLQKETDLIYDLKGSSHDRRAGPRKDNRGRVVFKDLDWTDKHEAISMSQEDRDKLLVQVSKDVGLLKRHNIMDYSLLVGFQSDTRTCEQQPVIGMIDTLCPFSWRKRAETTAKGLFFGRSAVDVVHPQKYGARFLNFVQSAVVPGPGRSDSTRC
SIO_010081: AWJ20_4025
subclass of: SO_0000673
so part of: AWJ20_4025
location: complement(1013454..1015280)
location: region:1013454-1015280:-1
so has part: feature:1013454-1015280:-1:exon

XP_018733700.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1013454-1015280:-1:exon

AWJ20_4026
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4026
so part of: sequence
location: complement(<1030228..>1031409)
location: region:1030228-1031409:-1
so has part: feature:1030228-1031409:-1:exon
subclass of: SO_0000010

30036113
type: Gene
SIO_000068: ncbigene

position:1030228:-1
position: 1030228
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1031409:-1
position: 1031409
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1030228-1031409:-1:exon

AWJ20_4026
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4026
product: homogentisate 1,2-dioxygenase
transcript id: XM_018881075.1
SIO_010081: AWJ20_4026
subclass of: SO_0000673
so part of: AWJ20_4026
location: complement(<1030228..>1031409)
location: region:1030228-1031409:-1
so has part: feature:1030228-1031409:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1030228-1031409:-1:exon

AWJ20_4026
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4026
inference: similar to AA sequence:KEGG_Orthology:K00451
codon start: 1
product: homogentisate 1,2-dioxygenase
translation: MRPAVAHKGYTDLPDKPDMESVFLSTNPKVHVSPTQLAWSPFDIPTEKTTFVDGLKTVAGSGEPSLREGLATHVYTANASMKNQAFVNQDGEFLIMPQQGRVDVQTEFGWLYVQPGEFLVVQRGIRFSVNLPDGPSRGYILEIWGSNFELPDLGPLGGYGMANARDFLYPQASYDLEPVSNFEIITKLNGKFFKSTQDHTPYDVVAWHGNYVPYKYDMTKFVNIGSISVDHIDPSVFTIMTAKSRDPNAALADVMIFMPRWDVASHTYRPPYYHRNVASELMGLIYGDYGGRSDSFQPGSVSYETGMTPHGVAYPEFKAASENPPPTQQISLGSMAFMFESSRPFTITDYAWKSDKIHFHETGMWDDLVNNFTLHLEEVKKLTNGKHEHGVNH
SIO_010081: AWJ20_4026
subclass of: SO_0000673
so part of: AWJ20_4026
location: complement(1030228..1031409)
location: region:1030228-1031409:-1
so has part: feature:1030228-1031409:-1:exon

XP_018733701.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1030228-1031409:-1:exon

AWJ20_4027
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4027
so part of: sequence
location: <1032590..>1033435
location: region:1032590-1033435:1
so has part: feature:1032590-1033435:1:exon
subclass of: SO_0000010

30036114
type: Gene
SIO_000068: ncbigene

position:1032590:1
position: 1032590
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1033435:1
position: 1033435
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1032590-1033435:1:exon

AWJ20_4027
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4027
product: Mediator of RNA polymerase II transcription subunit 18
transcript id: XM_018881076.1
SIO_010081: AWJ20_4027
subclass of: SO_0000673
so part of: AWJ20_4027
location: <1032590..>1033435
location: region:1032590-1033435:1
so has part: feature:1032590-1033435:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1032590-1033435:1:exon

AWJ20_4027
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4027
inference: similar to AA sequence:KEGG_Orthology:K15136
codon start: 1
product: Mediator of RNA polymerase II transcription subunit 18
translation: MMYQQLSLVGSLKDAEIKITLHTLAALSGMKPTRIFNHHLVWIPTYPFNPVLAAGEVNQIEQYRITCDTSLVDPASEDEYLPPAGFKENKDFLQTMPWKMIISEVPEAGKRQVTSQSILESAIVEGSPFEFMEKMGYKFSHEYWSKGSEFVFGNIVVRIFRICVKDQITAPTTEDQNLADTTEGSGTADNAMVIDDDSFGDKITAETALASQKAAYQPLKLLDKSGQWSIKAFLSVKQLTDLESIITGTAQLEKFQAEMAGLFELKMADRNSYDTRLRANR
SIO_010081: AWJ20_4027
subclass of: SO_0000673
so part of: AWJ20_4027
location: 1032590..1033435
location: region:1032590-1033435:1
so has part: feature:1032590-1033435:1:exon

XP_018733702.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1032590-1033435:1:exon

AWJ20_4028
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: NOP7
locus tag: AWJ20_4028
so part of: sequence
location: complement(<1033650..>1035482)
location: region:1033650-1035482:-1
so has part: feature:1033650-1035482:-1:exon
subclass of: SO_0000010

30036115
type: Gene
SIO_000068: ncbigene

position:1033650:-1
position: 1033650
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1035482:-1
position: 1035482
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1033650-1035482:-1:exon

AWJ20_4028
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: NOP7
locus tag: AWJ20_4028
product: Nop7p
transcript id: XM_018881077.1
SIO_010081: AWJ20_4028
subclass of: SO_0000673
so part of: AWJ20_4028
location: complement(<1033650..>1035482)
location: region:1033650-1035482:-1
so has part: feature:1033650-1035482:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1033650-1035482:-1:exon

AWJ20_4028
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: NOP7
locus tag: AWJ20_4028
inference: similar to AA sequence:KEGG_Orthology:K14843
note: Component of several different pre-ribosomal particles; forms a complex with Ytm1p and Erb1p that is required for maturation of the large ribosomal subunit; required for exit from G0 and the initiation of cell proliferation; GO_component: GO:0070545 - PeBoW complex [Evidence IDA,IPI] [PMID 16287855]; GO_component: GO:0005730 - nucleolus [Evidence IEA,IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10684247]; GO_component: GO:0005654 - nucleoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10684247]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0043021 - ribonucleoprotein complex binding [Evidence IEA]; GO_process: GO:0044786 - cell cycle DNA replication [Evidence IMP] [PMID 12110181]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IEA]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IEA]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12837249]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IDA] [PMID 11911362]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IDA] [PMID 16888624]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA,IEA]
codon start: 1
product: Nop7p
translation: MRIKKKHQAGAAKNFITRTQAVKKLQVSLADFRRLCIFKGIYPREPRNKKKANKGSTKPTTFYYTKDIQYLLHEPVLNKFREHKIFARKLSRALGRGEVGDAKRLDDNRPRYKLDHIIKERYPTFNDALRDLDDPLCMLFLFAAMPATNSVNYKVIEDADRLCNQWMAYVARERLLRKVFVSIKGVYYQARVKGQDILWLVPFKFPQNIPDDIDFRIMLTFLEFYTTLLQFVLYRLYTESGLVYPPQINASKMKGVGGISAYLLESRQNGLSLLGAKASENTNGKATTNGATPNLKMDRIAQADEEADHDGDEQEEDENDAANESALDTFQPIPATETAASDILAQPAPESEREGQLFSNFTFFVGREVSLDIVEFLIIAFDGKVISESAIDELIDNENEESSNDATEAYKKIDLSTVTHQICDRPTVPNKVPGRTYIQPQWIFDSINKGQLLPVANYAPGEALPPHLSPWGDAANYDPEAALEDGEGESSSEAEEEETIEGEALPDEDEEEVDEEAEEALERQRDLEKEAAGIKFSEQQSSAESKKRKKKTAADKEQEEKDLRKIMMSNKQKKLYNKMQYGIDKKQAREEELKKKRRKIEATKEKLKSS
SIO_010081: AWJ20_4028
subclass of: SO_0000673
so part of: AWJ20_4028
location: complement(1033650..1035482)
location: region:1033650-1035482:-1
so has part: feature:1033650-1035482:-1:exon

XP_018733703.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1033650-1035482:-1:exon

AWJ20_4029
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: STL1
locus tag: AWJ20_4029
so part of: sequence
location: complement(<1038269..>1039882)
location: region:1038269-1039882:-1
so has part: feature:1038269-1039882:-1:exon
subclass of: SO_0000010

30036116
type: Gene
SIO_000068: ncbigene

position:1038269:-1
position: 1038269
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1039882:-1
position: 1039882
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1038269-1039882:-1:exon

AWJ20_4029
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: STL1
locus tag: AWJ20_4029
product: glucose-inactivated glycerol proton symporter STL1
transcript id: XM_018881078.1
SIO_010081: AWJ20_4029
subclass of: SO_0000673
so part of: AWJ20_4029
location: complement(<1038269..>1039882)
location: region:1038269-1039882:-1
so has part: feature:1038269-1039882:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1038269-1039882:-1:exon

AWJ20_4029
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: STL1
locus tag: AWJ20_4029
codon start: 1
product: glucose-inactivated glycerol proton symporter STL1
translation: MVDISGGIRSRTNTGGLTGRRLRWAITLVATIGFSLFGYDQGLMSGQITAPQFNKEFPATAGTSSHATVIQGAVTSCYELGCFFGAMFALFKGEKIGRRPLILLGSSIIILGTVISVTAFGPHWGLGQFVVGRVITGLGNGINTSQIPIWQSEISKAENRGRLVNLEGSVIAVGTFIAYWLDYGFSFTNTSVQWRFPVAFQIFFAGLLFFGMWSLPESPRWLISQGRHEEAISILAALNNTDINDEQIIAEARVVMEVVSRNKDQASIREVFTGGKTQHFRRMLIGSSTQFFQQFTGCNSSIYYSTVLMKTSMNVSDSLALILGGVFATVYALSTIPSFFLIDSIGRRKLFIIGALGQGISFTITFACLIPNTMEASKGAIVGLYLFIFFFAFTILPLPWVYPPEINPTRTRTVATGFSTCTNWLSNFVIVMITPIFVTNTRWGCYLFFALINFLFVPIIYFFYPETAGRSLEEMDIIFAKGYVEKKPYFRVAQQLPSLTPEQVENEAISLGLYEAPSEKGDADYVDDITNSETTSS
SIO_010081: AWJ20_4029
subclass of: SO_0000673
so part of: AWJ20_4029
location: complement(1038269..1039882)
location: region:1038269-1039882:-1
so has part: feature:1038269-1039882:-1:exon

XP_018733704.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1038269-1039882:-1:exon

AWJ20_4030
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SGA1
locus tag: AWJ20_4030
so part of: sequence
location: complement(<1042292..>1043908)
location: region:1042292-1043908:-1
so has part: feature:1042292-1043908:-1:exon
subclass of: SO_0000010

30036118
type: Gene
SIO_000068: ncbigene

position:1042292:-1
position: 1042292
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1043908:-1
position: 1043908
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1042292-1043908:-1:exon

AWJ20_4030
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SGA1
locus tag: AWJ20_4030
product: glucan 1,4-alpha-glucosidase
transcript id: XM_018881080.1
SIO_010081: AWJ20_4030
subclass of: SO_0000673
so part of: AWJ20_4030
location: complement(<1042292..>1043908)
location: region:1042292-1043908:-1
so has part: feature:1042292-1043908:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1042292-1043908:-1:exon

AWJ20_4030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SGA1
locus tag: AWJ20_4030
inference: similar to AA sequence:KEGG_Orthology:K01178
note: Intracellular sporulation-specific glucoamylase; involved in glycogen degradation; induced during starvation of a/a diploids late in sporulation, but dispensable for sporulation; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 2493265]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004339 - glucan 1,4-alpha-glucosidase activity [Evidence IEA,IEA]; GO_function: GO:0004339 - glucan 1,4-alpha-glucosidase activity [Evidence IDA] [PMID 2493265]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IEP] [PMID 350852]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0005980 - glycogen catabolic process [Evidence IMP] [PMID 11486014]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000272 - polysaccharide catabolic process [Evidence IEA]; GO_process: GO:0005976 - polysaccharide metabolic process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]
codon start: 1
product: glucan 1,4-alpha-glucosidase
translation: MLVEKFLILLASCSVTSSLPIYESLSSFVGFTSPDEQKLLNGVDATRSSSSKGGHRVPGSLINEIEYEDWLKTETDLAFDRVISNIGGYGQGLDDVLPGAVIASPSKSKPNYYYIWTRDAAISINSLITRYDDQKGQNETLRSIINDYLNSSAIMQHVDNPSGTFENLEGLGEPKFMVDGRPFTSTWGRPQRDGPPLRASTMINYVNSEVRNNNLQYKDFEDLYYNVIRPDLDYVVQHWKDKSFDLWEEVYGNHFFTSMVQLKSLIHGAEIAHELGDKISFYVFRGVASELREYIRQYWDSSRKHLVETLDSKERSGLDTALFLGSIHAIDLYNWDGIDTDELVFPPYSDEVIASIDHLVNDMRYRFPINARRLDEFSKQGKNNSLAGVGIGRYPEDVYDGADVTTGNPWFLCTATVSQTLYLLADHLITRPDSYKLVISDITKPFYSLFLSDNENFDSPDFSIARTNEAYTALVKRIIEYADSFLDVIREHHANDGSMSEQFSRYDGYMRGATHLTWSYSAFWAASRQRNLTLSRLY
SIO_010081: AWJ20_4030
subclass of: SO_0000673
so part of: AWJ20_4030
location: complement(1042292..1043908)
location: region:1042292-1043908:-1
so has part: feature:1042292-1043908:-1:exon

XP_018733705.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1042292-1043908:-1:exon

AWJ20_4031
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ARK1
locus tag: AWJ20_4031
so part of: sequence
location: <1046236..>1049613
location: region:1046236-1049613:1
so has part: feature:1046236-1049613:1:exon
subclass of: SO_0000010

30036119
type: Gene
SIO_000068: ncbigene

position:1046236:1
position: 1046236
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1049613:1
position: 1049613
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1046236-1049613:1:exon

AWJ20_4031
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ARK1
locus tag: AWJ20_4031
product: serine/threonine protein kinase ARK1
transcript id: XM_018881081.1
SIO_010081: AWJ20_4031
subclass of: SO_0000673
so part of: AWJ20_4031
location: <1046236..>1049613
location: region:1046236-1049613:1
so has part: feature:1046236-1049613:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1046236-1049613:1:exon

AWJ20_4031
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ARK1
locus tag: AWJ20_4031
inference: similar to AA sequence:KEGG_Orthology:K08853
codon start: 1
product: serine/threonine protein kinase ARK1
translation: MQKQAPPGAYPPGTQLTVGSHAVTIKSYISEGGFAHVYVVKISPSTLEGEIACLKRVVVPDKIHLNLLRAEVDAMKRLKGHPNIVRYIDSHAARLNAQGGLPASAQAQLQAQGHGQGGSQVYEVFLLMEYCSGNGLIDFMNTRLREQLTESEILKITSDVTYGLACMHYLQPPLIHRDLKIENILISGDGTYKLCDFGSVSPILRPPRNPGEYHILEQDIQRHTTAQYRSPEMIDIYRGHPIDEKSDIWALGVFLYKLCYYTTPFEREGSLAILHASFSFPPKPVYSDRLKGVISALLREDPRARPNVYQVLKEICAMRGLEVPIKDIYSGATSTAATMVQPTTSVQLAHPAQDNQNHSLSASQQQPDNVSTAQGIVRSIPKEQQQRQWVPEVTPMFRGRITVQQNNSMPSLDKFDNGDENHESRGSFTTGLASAANFDDDPFSSLDSSAKQQRAKTQPVTPVHSSTPQEFTFDEADIESRFPSVEDLARELERTPFEFAQAHKPIQQQTNLQARTQPQVQKQTQTAPQPQFKPQMQSQLRSQPEGQVSQEMPRQVQSQQAIPQPATRLEQSTTSVSRSSRDSTPGEPLKTKPPPTMRKPGTTGTPSGYSAYPLKSASPPMPAPKKLSQTSQPKPEKPALNTMPSGLSINISSASSGSDSEPTPSESYSKPLPRPPPHQIRPRPLSMYSQSNTDAYFEASYNSVNQSPSPVIDQSQKFSYLPEDSNAIANTGNANHTGSLIDTMPPEDREQLKVILTGLSQRSNTVVLDNSENHIDSNVDFLKALDNENTGSRPHHHRKPSQSQYLYPSGTGDGSGGVGNGGSTGGSGWMNRSSSTSRRSGSTSRHSKKPSMTSLKGKIGDAFKKFDNAAGAYRSTSDSSMMGPPVAAPRTVSAGSNPGGYRSSSRMSYTAESPGDYAFSPKKEDDEFKYPVSSSTSVKHGPPHVHMHRSKSRNNGSSSIQSRVQQFLSRSESPPKKTASGYGKYTEEERQVSSSTHSPSPPNDTSSMPPPPPSKQYAAQKLGREVHREIKRASMESTRDWINSDGSGRRNSKMHLPGRTDSQHSRKLSNISSESSGSNSGSKRPPVRPKKPAHLQSPRRTVDKVQKAIDDDWEASFNQKYPSLG
SIO_010081: AWJ20_4031
subclass of: SO_0000673
so part of: AWJ20_4031
location: 1046236..1049613
location: region:1046236-1049613:1
so has part: feature:1046236-1049613:1:exon

XP_018733706.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1046236-1049613:1:exon

AWJ20_4032
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PCP1
locus tag: AWJ20_4032
so part of: sequence
location: <1055708..>1056874
location: region:1055708-1056874:1
so has part: feature:1055708-1056874:1:exon
subclass of: SO_0000010

30036120
type: Gene
SIO_000068: ncbigene

position:1055708:1
position: 1055708
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1056874:1
position: 1056874
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1055708-1056874:1:exon

AWJ20_4032
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PCP1
locus tag: AWJ20_4032
product: Pcp1p
transcript id: XM_018881082.1
SIO_010081: AWJ20_4032
subclass of: SO_0000673
so part of: AWJ20_4032
location: <1055708..>1056874
location: region:1055708-1056874:1
so has part: feature:1055708-1056874:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1055708-1056874:1:exon

AWJ20_4032
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PCP1
locus tag: AWJ20_4032
inference: similar to AA sequence:KEGG_Orthology:K09650
note: Mitochondrial serine protease; required for the processing of various mitochondrial proteins and maintenance of mitochondrial DNA and morphology; belongs to the rhomboid-GlpG superfamily of intramembrane peptidases; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 12774122]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IEA]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IMP] [PMID 12774122]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IMP] [PMID 20558178]; GO_function: GO:0008236 - serine-type peptidase activity [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0010821 - regulation of mitochondrion organization [Evidence IMP] [PMID 11907266]; GO_process: GO:0010821 - regulation of mitochondrion organization [Evidence IMP] [PMID 12707284]; GO_process: GO:0006465 - signal peptide processing [Evidence IMP] [PMID 12417197]
codon start: 1
product: Pcp1p
translation: MRNLSSNLSRSAFHVSGQLFGISRQKAFSSEAIGQVLIRGVAARHYSRNVTSSFSTLGSKYEAFTRSHTSINTPEKSVSVKHFTAGFFTNTFHTQNGPFLQSFTKSVSPRQSILFMATHRDHGYGGSNGGSSYGRGGNWGKFNRYKNILVNHRVPLLFTGAVLTVTTFIFPVLFQMPGMGVVKQNPQLVVYALIGLNVAGFLAWKTKQGSRFMYRYGLLHKDSQFNKWSMIGSAFSHQEFWHIGINMYVLYNFGTTVASWVGTEQFLAAYIDGAVISSLASLMLPVLVRRFQNIPSLGASGAVFTTFGLFSYLAPHAKLALMFIPLPFGAWTVFLGTMAYNGAGLFMRFGLSDYAGHLGGSIVGIIWGYYLTQRARRIRQRRSVINYR
SIO_010081: AWJ20_4032
subclass of: SO_0000673
so part of: AWJ20_4032
location: 1055708..1056874
location: region:1055708-1056874:1
so has part: feature:1055708-1056874:1:exon

XP_018733707.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1055708-1056874:1:exon

AWJ20_4033
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_4033
so part of: sequence
location: complement(<1069797..>1072009)
location: region:1069797-1072009:-1
so has part: feature:1069797-1072009:-1:exon
subclass of: SO_0000010

30036121
type: Gene
SIO_000068: ncbigene

position:1069797:-1
position: 1069797
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1072009:-1
position: 1072009
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1069797-1072009:-1:exon

AWJ20_4033
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_4033
product: 1-phosphatidylinositol-4-phosphate 5-kinase
transcript id: XM_018881083.1
SIO_010081: AWJ20_4033
subclass of: SO_0000673
so part of: AWJ20_4033
location: complement(join(<1069797..1071562,1071847..>1072009))
location: region:1069797-1072009:-1
so has part: feature:1071847-1072009:-1:exon
so has part: feature:1069797-1071562:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1071847-1072009:-1:exon

position:1071847:-1
position: 1071847
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1069797-1071562:-1:exon

position:1071562:-1
position: 1071562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

AWJ20_4033
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_4033
inference: similar to AA sequence:KEGG_Orthology:K00889
note: Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]
codon start: 1
product: 1-phosphatidylinositol-4-phosphate 5-kinase
translation: MLALDTGLFPVSTPAGSPAGVPAAAGCRLQVAATGYVNQDYVVGADINIIFRAPCSHRVPRRPVLSDVNHGIVVPKYGACAQQENRRLARRSAFAYHKVLILECSPDDSGVSVGSDETLNEPTVWKPIDIVAEQAYCSSAPIDNDDDNSSEWSFETGDEAAFTTGQFGTTWSEEDTEATWSAPAASWALSDCPIEIDENESTPESHGEVTLVESPLETSRSDLAESEEITPSKVAEVPCAIADIPTSNSSIDSLVAEIIAVATLYKGLPQLVVSGGLQADSEFELPKTAPLALSKPIAQTPSDDLVIQVEEVDKSKTTLLLTRAKAKLTSFTGHASPILKSTLMFNGVQTAVYATPLSSHETLTMENKKYRLDGGAIIKAYSPIVYQSIRTLCGIDCHEFLNSFVLQSDLTKTKSPGKSGSDFLFTPDGKYIIKTIKRKEHNVIANSEFLADYYNHVKAQSSTQLPFYLGNYTLVAGGKKTHFVIMKNLLQKETQLIYDLKGSTHDRRAGPRKDNRGRVVFKDLDWTDKHEAIFMSQEDRDKLMVQVSKDVDFLKQHNIMDYSLLVGLQSDTRTCQQQPVIGMIDTLCPFSWRKRAETISKSLIFGSSAIDVVHPSKYGARFLNFVQSAVVPRPGRSVSTRC
SIO_010081: AWJ20_4033
subclass of: SO_0000673
so part of: AWJ20_4033
location: complement(join(1069797..1071562,1071847..1072009))
location: region:1069797-1072009:-1
so has part: feature:1071847-1072009:-1:exon
so has part: feature:1069797-1071562:-1:exon

XP_018733708.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1071847-1072009:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1069797-1071562:-1:exon

AWJ20_4034
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_4034
so part of: sequence
location: complement(<1073340..>1074926)
location: region:1073340-1074926:-1
so has part: feature:1073340-1074926:-1:exon
subclass of: SO_0000010

30036122
type: Gene
SIO_000068: ncbigene

position:1073340:-1
position: 1073340
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1074926:-1
position: 1074926
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1073340-1074926:-1:exon

AWJ20_4034
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_4034
product: 1-phosphatidylinositol-4-phosphate 5-kinase
transcript id: XM_018881084.1
SIO_010081: AWJ20_4034
subclass of: SO_0000673
so part of: AWJ20_4034
location: complement(<1073340..>1074926)
location: region:1073340-1074926:-1
so has part: feature:1073340-1074926:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1073340-1074926:-1:exon

AWJ20_4034
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_4034
inference: similar to AA sequence:KEGG_Orthology:K00889
note: Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]
codon start: 1
product: 1-phosphatidylinositol-4-phosphate 5-kinase
translation: MYHYDIPLRRSLANYARPVRYMARNLIKFTDHLYTCSYLLPEVNIPQLLWDRSVQSKFHSANELAVKYLESKGYCNTYVCEKLCEKKTQELVRKARLSQSSAWSTLTSAIADLNETIEIARDQIDRSEVELWRAIRGVEKHLNFVLTLGATVSTESIKKAESHLSGRLSTWETARAPRPKKRVPSATKSSTNPRDTRGTRPSSSHQQKVSIPTTAKRSYEKKTPTRSLRTAILFDGVYRCVCTSLTPGVSHISSPTIYAVAGGTIEGHSQDLFNTIRRLQGIRTSDYLSAFDLNSAGIAIKSPGRSGSDLLYTENGKYIIKTIPSSEHEVLIDLLPSYVEHLERHKNSLLPVFLGHYTHEDNGKRTHFVVMKNLFSGHGLVDKVFDLKGSTYNRAVDENTDNVGRLVYKDIEWMKHKETIQMNEEERTKFMIQLMNDIAFLKRNNIFDYSMLVGKYDDSKKGVMGIIDILTPYNKPQALKRTALGLLHDPTTLSCMKPCDYAARFFNFMESKVVPAVITGRVSRHHKH
SIO_010081: AWJ20_4034
subclass of: SO_0000673
so part of: AWJ20_4034
location: complement(1073340..1074926)
location: region:1073340-1074926:-1
so has part: feature:1073340-1074926:-1:exon

XP_018733709.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1073340-1074926:-1:exon

AWJ20_4035
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: UBC6
locus tag: AWJ20_4035
so part of: sequence
location: complement(<1078022..>1078540)
location: region:1078022-1078540:-1
so has part: feature:1078022-1078540:-1:exon
subclass of: SO_0000010

30036123
type: Gene
SIO_000068: ncbigene

position:1078022:-1
position: 1078022
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1078540:-1
position: 1078540
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1078022-1078540:-1:exon

AWJ20_4035
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: UBC6
locus tag: AWJ20_4035
product: E2 ubiquitin-conjugating protein UBC6
transcript id: XM_018881085.1
SIO_010081: AWJ20_4035
subclass of: SO_0000673
so part of: AWJ20_4035
location: complement(<1078022..>1078540)
location: region:1078022-1078540:-1
so has part: feature:1078022-1078540:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1078022-1078540:-1:exon

AWJ20_4035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: UBC6
locus tag: AWJ20_4035
inference: similar to AA sequence:KEGG_Orthology:K04554
note: Ubiquitin-conjugating enzyme involved in ERAD; located at the cytosolic side of the ER membrane; tail region contains a transmembrane segment at the C-terminus; substrate of the ubiquitin-proteasome pathway; ER-associated protein degradation is also known as ERAD; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 8396728]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016881 - acid-amino acid ligase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IMP] [PMID 18191224]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA,IMP] [PMID 8396728]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 18191224]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 8393731]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IGI] [PMID 8396728]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IGI,IMP] [PMID 8641272]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IGI,IMP] [PMID 8781238]; GO_process: GO:0006513 - protein monoubiquitination [Evidence IDA,IMP] [PMID 8396728]; GO_process: GO:0000209 - protein polyubiquitination [Evidence IMP] [PMID 19345192]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]
codon start: 1
product: E2 ubiquitin-conjugating protein UBC6
translation: MMTPSGRFKTSTRLCLSISDYHPKTWNPAWSVSTILTGLLSFMVSDESTAGSMISTDEQKRKLARESLAWNVKYNVNFNIHFPEVAKKNSADLVAQQAQEALAASANSTASQKPNGVTQSGTATLVQAGAGQETEKTATTNTSGFSLGQKALCVVVVVASYVLASHLIQVYR
SIO_010081: AWJ20_4035
subclass of: SO_0000673
so part of: AWJ20_4035
location: complement(1078022..1078540)
location: region:1078022-1078540:-1
so has part: feature:1078022-1078540:-1:exon

XP_018733710.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1078022-1078540:-1:exon

AWJ20_4036
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4036
so part of: sequence
location: complement(<1081739..>1081837)
location: region:1081739-1081837:-1
so has part: feature:1081739-1081837:-1:exon
subclass of: SO_0000663

30036124
type: Gene
SIO_000068: ncbigene

position:1081739:-1
position: 1081739
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:1081837:-1
position: 1081837
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1081739-1081837:-1:exon

AWJ20_4036
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_4036
product: tRNA-Ser
SIO_010081: AWJ20_4036
subclass of: SO_0000673
so part of: AWJ20_4036
location: complement(<1081739..>1081837)
location: region:1081739-1081837:-1
so has part: feature:1081739-1081837:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1081739-1081837:-1:exon

AWJ20_4037
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4037
so part of: sequence
location: complement(<1082163..>1083047)
location: region:1082163-1083047:-1
so has part: feature:1082163-1083047:-1:exon
subclass of: SO_0000010

30036125
type: Gene
SIO_000068: ncbigene

position:1082163:-1
position: 1082163
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1083047:-1
position: 1083047
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1082163-1083047:-1:exon

AWJ20_4037
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4037
product: U4/U6.U5 small nuclear ribonucleoprotein
transcript id: XM_018881086.1
SIO_010081: AWJ20_4037
subclass of: SO_0000673
so part of: AWJ20_4037
location: complement(<1082163..>1083047)
location: region:1082163-1083047:-1
so has part: feature:1082163-1083047:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1082163-1083047:-1:exon

AWJ20_4037
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4037
codon start: 1
product: U4/U6.U5 small nuclear ribonucleoprotein
translation: MSRQSRASAADFMDYDADSYSADKKDELDSISESRPSDSSKDGDENTNDPRSRSREYGRDSDRYGDRSGSRETVRRATRYERDDRDSKRRSERSYSPYRGDSRRYDRRDDRITDRGDRGDRSGRYERDETPRGRGRYEDSRYDDRYYDPKREIEEDRGDRRERGRDFGRNRDSYRRYNSARSRSRSRSGEFDSKTKTSNGLSKSRYDSYRDNKAGNDTDKKQQIDNTPATEAAPEDPEELMRKMMGFSGFSTTKGQKVVGADVSGIAKTAKSSTFRQYMNRTRGFNRDLSPTRE
SIO_010081: AWJ20_4037
subclass of: SO_0000673
so part of: AWJ20_4037
location: complement(1082163..1083047)
location: region:1082163-1083047:-1
so has part: feature:1082163-1083047:-1:exon

XP_018733711.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1082163-1083047:-1:exon

AWJ20_4038
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4038
so part of: sequence
location: <1083338..>1084726
location: region:1083338-1084726:1
so has part: feature:1083338-1084726:1:exon
subclass of: SO_0000010

30036126
type: Gene
SIO_000068: ncbigene

position:1083338:1
position: 1083338
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1084726:1
position: 1084726
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1083338-1084726:1:exon

AWJ20_4038
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4038
product: hypothetical protein
transcript id: XM_018881087.1
SIO_010081: AWJ20_4038
subclass of: SO_0000673
so part of: AWJ20_4038
location: <1083338..>1084726
location: region:1083338-1084726:1
so has part: feature:1083338-1084726:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1083338-1084726:1:exon

AWJ20_4038
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4038
inference: similar to AA sequence:KEGG_Orthology:K15053
codon start: 1
product: hypothetical protein
translation: MSLIDTVLANKLFTDRRRVSLYSNFRKLKDSNIDGYEANIAAWKILLTDALDQGNFEDATAIPGGPGLLEALYDPDNGRPLALDVVIDELVADKVLIPLPIYMAEKSSIYSQGAWLTKMLNPKVVTSWVLSYTKVWDSSWKSIGPKAELGTLKKEKYISIQALETIGNAIWANLENEHGITASYTNGVFTKEMLTSLLSEVSVTKKIHNTVQTSRVLLSPTDIEVVLKYLVRDKNKLISDGQIYKVNSRNASPLITQKDIAIANLRSTILQVTDRVNGLSDQIADCDLKARNALERKNKPVAVYALKSKKLAESSQVKALDMLSNLELLVGKIDDATDQAEIVSALSSGAEILTTLNSTIGGAEKVGDLMDQLRDQADETDEIGREISSMVGRSVDEDEVESELDLMLAEERQKQLDKLPVPPTNSTHATPAKDSQEDPAIASLSDELSATSLEPRKKVLAE
SIO_010081: AWJ20_4038
subclass of: SO_0000673
so part of: AWJ20_4038
location: 1083338..1084726
location: region:1083338-1084726:1
so has part: feature:1083338-1084726:1:exon

XP_018733712.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1083338-1084726:1:exon

AWJ20_4039
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: UBX7
locus tag: AWJ20_4039
so part of: sequence
location: complement(<1084955..>1086989)
location: region:1084955-1086989:-1
so has part: feature:1084955-1086989:-1:exon
subclass of: SO_0000010

30036127
type: Gene
SIO_000068: ncbigene

position:1084955:-1
position: 1084955
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1086989:-1
position: 1086989
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1084955-1086989:-1:exon

AWJ20_4039
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: UBX7
locus tag: AWJ20_4039
product: Ubx7p
transcript id: XM_018881088.1
SIO_010081: AWJ20_4039
subclass of: SO_0000673
so part of: AWJ20_4039
location: complement(join(<1084955..1086664,1086873..>1086989))
location: region:1084955-1086989:-1
so has part: feature:1086873-1086989:-1:exon
so has part: feature:1084955-1086664:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1086873-1086989:-1:exon

position:1086873:-1
position: 1086873
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1084955-1086664:-1:exon

position:1086664:-1
position: 1086664
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

AWJ20_4039
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: UBX7
locus tag: AWJ20_4039
note: UBX (ubiquitin regulatory X) domain-containing protein; interacts with Cdc48p; UBX7 has a paralog, UBX6, that arose from the whole genome duplication; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 14755638]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IMP] [PMID 14755638]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 14755638]
codon start: 1
product: Ubx7p
translation: MSNSSSSLFRVSFRRFAMGGQAREPASGEFYPKRAREPGAESYIQTKFVPLEVVAGSQQYVFFSQVFPVAKIPSIFIINQSVVVDRFDSEVDAQEFLDRLAQADQGLVRGVRDVSGNTSGAGNDTGSTANVQNQSSLDSSNGSSLDQNAIAAAAAAAVAALTGRSGSASGLPAGSSASVPSVSSVTPSAGSDSSNSTGAGNSTADDSAVTRGSDAATDRSASTSHNNTISTSGSGSTTTSTNSASNSGANDVSSSSPEPTNPPVPRKEKSSTPTNSVAASASTNTSNTHSSSTSSSSGLSDTQRYQIQLRKQRQADAEERKRILRLLETDREERRAQRLHHQQEQQDVPLAAESTTIPQKKKQTRSLSLSQSNQCALVIRLFDGQALKNIFNNSDTLDIVRKWVDENRTDSEDPYQFYQTFPKRSFGPGEENSTLLELDLCPSSTLILKPAENVLNAYSSSYSPSAWLQGGTRTISDAIYTFLGIGYKPPPPAPSEPSDEPSRSASPVPNPRRSGYSTPLPTPRPSDNTNPSSPSPPKSENPAPATLLSANSFSQPRDDVHPSKPNSISSSRSSSAVNVRTLHDNDDAKDDRLTYNGNQLNLEDDNNS
SIO_010081: AWJ20_4039
subclass of: SO_0000673
so part of: AWJ20_4039
location: complement(join(1084955..1086664,1086873..1086989))
location: region:1084955-1086989:-1
so has part: feature:1086873-1086989:-1:exon
so has part: feature:1084955-1086664:-1:exon

XP_018733713.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1086873-1086989:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1084955-1086664:-1:exon

AWJ20_4040
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PDC1
locus tag: AWJ20_4040
so part of: sequence
location: complement(<1087593..>1089275)
location: region:1087593-1089275:-1
so has part: feature:1087593-1089275:-1:exon
subclass of: SO_0000010

30036129
type: Gene
SIO_000068: ncbigene

position:1087593:-1
position: 1087593
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1089275:-1
position: 1089275
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1087593-1089275:-1:exon

AWJ20_4040
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PDC1
locus tag: AWJ20_4040
product: indolepyruvate decarboxylase 1
transcript id: XM_018881090.1
SIO_010081: AWJ20_4040
subclass of: SO_0000673
so part of: AWJ20_4040
location: complement(<1087593..>1089275)
location: region:1087593-1089275:-1
so has part: feature:1087593-1089275:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1087593-1089275:-1:exon

AWJ20_4040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PDC1
locus tag: AWJ20_4040
inference: similar to AA sequence:KEGG_Orthology:K01568
note: Major of three pyruvate decarboxylase isozymes; key enzyme in alcoholic fermentation; decarboxylates pyruvate to acetaldehyde; involved in amino acid catabolism; subject to glucose-, ethanol-, and autoregulation; activated by phosphorylation in response to glucose levels; N-terminally propionylated in vivo; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 2665820]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16850348]; GO_function: GO:0047433 - branched-chain-2-oxoacid decarboxylase activity [Evidence IMP] [PMID 9546164]; GO_function: GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004737 - pyruvate decarboxylase activity [Evidence IEA]; GO_function: GO:0004737 - pyruvate decarboxylase activity [Evidence IDA] [PMID 23423327]; GO_function: GO:0004737 - pyruvate decarboxylase activity [Evidence IDA] [PMID 2404950]; GO_function: GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]; GO_process: GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]; GO_process: GO:0006559 - L-phenylalanine catabolic process [Evidence IGI] [PMID 12499363]; GO_process: GO:0000955 - amino acid catabolic process via Ehrlich pathway [Evidence IEA]; GO_process: GO:0000949 - aromatic amino acid family catabolic process to alcohol via Ehrlich pathway [Evidence IGI] [PMID 12499363]; GO_process: GO:0009083 - branched-chain amino acid catabolic process [Evidence IEA]; GO_process: GO:0019655 - glucose catabolic process to ethanol [Evidence IDA] [PMID 2404950]; G…
codon start: 1
product: indolepyruvate decarboxylase 1
translation: MAQLHCQLTQLTQLTILTKRQVFGVPGDFNLALLDHIYEVEGIRWAGNTNELNAGYAADGYSRIKRLAALVTTFGVGELSALAAVAGSYAEHVGLLHVVGVPSMSAQNKHLLLHHTLGNGDFTVFKSMSGRITEHASVITDITTAAEQIDKAIRTAYIYQRPVYLAIPANLSDVKLDADLLRQPINLELEPNPPEAEAEVIEVVAEMVLKADHPILLIDACASRHNVMKEVAEIARVTQFPVFTTPMGKGSFDEHDPRFGGVYVGSLTLPEVAKVVEHADLILSFGALLSDFNTGSFSYHYDTKNIVEFHSDSTKIRSATYPEVKMQLILDKVAKRLSALPQKKLCEVPPYPPLIKATPESPLKQEWLWTRLTSWLRKGDIIVSETGTSNFGIIQTKFPQGAVGISQVLWGSIGYSVGALVGATMAASEVDPSRRVILFVGDGSLQLTVTEISTLVRWGLKPYIFILNNDGYTIERLIRGEKATYNDVHMWKYSKLLDLFNAKDHDALQVSTTGELDDLFNDAKFASPTKIRTIELFLPQMDAPTNLIKQAKITAATNSE
SIO_010081: AWJ20_4040
subclass of: SO_0000673
so part of: AWJ20_4040
location: complement(1087593..1089275)
location: region:1087593-1089275:-1
so has part: feature:1087593-1089275:-1:exon

XP_018733714.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1087593-1089275:-1:exon

AWJ20_4041
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_4041
so part of: sequence
location: complement(<1092052..>1093860)
location: region:1092052-1093860:-1
so has part: feature:1092052-1093860:-1:exon
subclass of: SO_0000010

30036130
type: Gene
SIO_000068: ncbigene

position:1092052:-1
position: 1092052
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1093860:-1
position: 1093860
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1092052-1093860:-1:exon

AWJ20_4041
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_4041
product: 1-phosphatidylinositol-4-phosphate 5-kinase
transcript id: XM_018881091.1
SIO_010081: AWJ20_4041
subclass of: SO_0000673
so part of: AWJ20_4041
location: complement(<1092052..>1093860)
location: region:1092052-1093860:-1
so has part: feature:1092052-1093860:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1092052-1093860:-1:exon

AWJ20_4041
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_4041
inference: similar to AA sequence:KEGG_Orthology:K00889
note: Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]
codon start: 1
product: 1-phosphatidylinositol-4-phosphate 5-kinase
translation: MGASFFTNGDYCSSNGGVLSDVNRGIVVPKYGACAQQENRRAARRSAFAYHKVLILECSDDDSGVSVGSDETLNEPTVWKPIDIVSEQPYCEESSHTYSAPVDNDDVNCSEWSFEAGDEAAFTTRQIESARSEEDTEATWSAPAAYWALSDCPIEVDESDSPIESHGDATLVELPLETTSSDLAESEEITPAKVAETPCAIADIPTSNSSIDSLIAEIISVATLYKDLPQLIVSGGHKADSEFELLKTAPLALSKPITHTPSDNLVIQVEEVDKSKTPLLLTRAKAKLTSFTGRTAPITKSTLMFNGIQTAVYATPLSSHENLTMENKKYRLDGGAIIKAYSPIVYQNIRTLCGIDCHEFLNSFVLQSDLTKTKSPGKSGSDFLFTPDGKYIIKTIKRKEHNVIANAEFLADYYNHVKAHPSTQLPFYLGNYTLVAGGKKTHFVIMKNLLQKETQLIYDLKGSTHDRRAGPRKDNRGRVVFKDLDWTDKHEAISMSQEDRDKLMVQVSKDVDFLKRHNIMDYSLLVGLQSDTRTCQQQPVIGMIDTLCPFSWRKRAETISKSLIFGSSAIDVVHPSKYGARFLNFVQSAVVPRPGRSVSIRC
SIO_010081: AWJ20_4041
subclass of: SO_0000673
so part of: AWJ20_4041
location: complement(1092052..1093860)
location: region:1092052-1093860:-1
so has part: feature:1092052-1093860:-1:exon

XP_018733715.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1092052-1093860:-1:exon

AWJ20_4042
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PMU1
locus tag: AWJ20_4042
so part of: sequence
location: complement(<1096481..>1096882)
location: region:1096481-1096882:-1
so has part: feature:1096481-1096882:-1:exon
subclass of: SO_0000010

30036131
type: Gene
SIO_000068: ncbigene

position:1096481:-1
position: 1096481
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1096882:-1
position: 1096882
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1096481-1096882:-1:exon

AWJ20_4042
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PMU1
locus tag: AWJ20_4042
product: Pmu1p
transcript id: XM_018881092.1
SIO_010081: AWJ20_4042
subclass of: SO_0000673
so part of: AWJ20_4042
location: complement(<1096481..>1096882)
location: region:1096481-1096882:-1
so has part: feature:1096481-1096882:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1096481-1096882:-1:exon

AWJ20_4042
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PMU1
locus tag: AWJ20_4042
note: Putative phosphomutase; contains a region homologous to the active site of phosphomutases; overexpression suppresses the histidine auxotrophy of an ade3 ade16 ade17 triple mutant and the temperature sensitivity of a tps2 mutant; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]
codon start: 1
product: Pmu1p
translation: MIYTWDGILLDPPPLVVDDLRETIGLEPCNKRRSRTHISTRFGHVVNIEDSFPEEDTTWRPDHRETPLEHSIRTKRFLTRLFDSDWHSPTPDDYVSVTSHMGTINSFLLVINHRPFTVLPGGMIPVIIRADRV
SIO_010081: AWJ20_4042
subclass of: SO_0000673
so part of: AWJ20_4042
location: complement(1096481..1096882)
location: region:1096481-1096882:-1
so has part: feature:1096481-1096882:-1:exon

XP_018733716.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1096481-1096882:-1:exon

AWJ20_4043
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CDC5
locus tag: AWJ20_4043
so part of: sequence
location: <1098756..>1100837
location: region:1098756-1100837:1
so has part: feature:1098756-1100837:1:exon
subclass of: SO_0000010

30036132
type: Gene
SIO_000068: ncbigene

position:1098756:1
position: 1098756
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1100837:1
position: 1100837
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1098756-1100837:1:exon

AWJ20_4043
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CDC5
locus tag: AWJ20_4043
product: polo kinase CDC5
transcript id: XM_018881093.1
SIO_010081: AWJ20_4043
subclass of: SO_0000673
so part of: AWJ20_4043
location: <1098756..>1100837
location: region:1098756-1100837:1
so has part: feature:1098756-1100837:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1098756-1100837:1:exon

AWJ20_4043
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CDC5
locus tag: AWJ20_4043
inference: similar to AA sequence:KEGG_Orthology:K06660
note: Polo-like kinase; controls targeting and activation of Rho1p at cell division site via Rholp guanine nucleotide exchange factors; regulates Spc72p; also functions in adaptation to DNA damage during meiosis; has similarity to Xenopus Plx1 and S. pombe Plo1p; possible Cdc28p substrate; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 10594031]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9819423]; GO_component: GO:0000922 - spindle pole [Evidence IDA] [PMID 10594031]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008047 - enzyme activator activity [Evidence IDA] [PMID 16763112]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 12637549]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 16319894]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA,IMP] [PMID 17122856]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA,IMP] [PMID 8321244]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0010696 - positive regulation of spindle pole body separation [Evidence IGI,IMP] [PMID 18500339]; GO_process: GO:0008104 - protein localization [Evidence IMP] [PMID 16763112]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 16319894]; GO_process: GO:…
codon start: 1
product: polo kinase CDC5
translation: MIYAAKTVAKASLKSSKTKEKLLAEIKIHKSMHHPNIVQFVDCFEDDDNVYILLEICENQSLMEMLRARSRLTEEETKYYIVQILGAVRYMHKRRVLHRDLKLGNIFIGDNMDVKIGDFGLATVLASDSDRRRTICGTPNYIAPEVLFGKKVGHSYEADIWSVGIILYTMLFGKPPFQTKEIEDIYDRIANLSYSFPEKVKVSEDAKDLIRKLLVTDPVERLSIEKVLEHPFFEYQFPAMVPSFALTKKPIYAAMTEHDARKNFINCQVQAKIRLAESTEVASTDVKPIKIDERAATSAQNSQTENGPAAVLPTSLSPASTKDKYKMVIVPRKSGLDLKQQQQQKLKLTGEYAGKAVEGNKQTAEQNQDRAYDRHSASPRPRWTRAVTALATGNRNQTDKQVAVEQRVTRSATAPPKTGQTNTASRTAVAAAAAAAAAPAASAVSGRTTHDGKSMLYRTLKTLTIAINSYESKETLAPAQSSPRVPAVFISKWVDFSDKYGLAYQTSESNDGVLFRNGTVLLMNPENETYLMLDKDDTTEKPLVCKWTGKAIYPSTENASEHKVIRLINTFHRYMQDHLQKSNYGIQRASDDLSVNPVFVTYYERQPEYVMLCLNNGTFQFNFPDHMKLIVSSGASQIDLIDNDQRLHTWSIQEALAFTHRAQHKKLVSDPAYTLIHKLAMCRTAVKKEYNSL
SIO_010081: AWJ20_4043
subclass of: SO_0000673
so part of: AWJ20_4043
location: 1098756..1100837
location: region:1098756-1100837:1
so has part: feature:1098756-1100837:1:exon

XP_018733717.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1098756-1100837:1:exon

AWJ20_4044
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SIN3
locus tag: AWJ20_4044
so part of: sequence
location: <1104184..>1104855
location: region:1104184-1104855:1
so has part: feature:1104184-1104855:1:exon
subclass of: SO_0000010

30036133
type: Gene
SIO_000068: ncbigene

position:1104184:1
position: 1104184
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1104855:1
position: 1104855
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1104184-1104855:1:exon

AWJ20_4044
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SIN3
locus tag: AWJ20_4044
product: transcriptional regulator SIN3
transcript id: XM_018881094.1
SIO_010081: AWJ20_4044
subclass of: SO_0000673
so part of: AWJ20_4044
location: <1104184..>1104855
location: region:1104184-1104855:1
so has part: feature:1104184-1104855:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1104184-1104855:1:exon

AWJ20_4044
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SIN3
locus tag: AWJ20_4044
codon start: 1
product: transcriptional regulator SIN3
translation: MPGHPSPPPPPPPPPPSQSHNMLSIQSLSGAGGPPPPASQSNRSPPVGPTAALAQQQQQQPSSGPGTSSVGPLPPQQSPQLQTVPPPPSQASGLSSLAQLGGAAAGTAAQGPPGGHGPPPPSQTASQTGPAPGGLGQPQIPPTSPNQQHQQQQQSAGLPPSAAQVLQPSPIQSAQQIAEAAAYRPLNVKDALSYLDQVKVQFQNQPDVYNHFLDIMKDFKSHR
SIO_010081: AWJ20_4044
subclass of: SO_0000673
so part of: AWJ20_4044
location: 1104184..1104855
location: region:1104184-1104855:1
so has part: feature:1104184-1104855:1:exon

XP_018733718.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1104184-1104855:1:exon

AWJ20_4045
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SIN3
locus tag: AWJ20_4045
so part of: sequence
location: <1105161..>1109414
location: region:1105161-1109414:1
so has part: feature:1105161-1109414:1:exon
subclass of: SO_0000010

30036134
type: Gene
SIO_000068: ncbigene

position:1105161:1
position: 1105161
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1109414:1
position: 1109414
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1105161-1109414:1:exon

AWJ20_4045
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SIN3
locus tag: AWJ20_4045
product: transcriptional regulator SIN3
transcript id: XM_018881095.1
SIO_010081: AWJ20_4045
subclass of: SO_0000673
so part of: AWJ20_4045
location: <1105161..>1109414
location: region:1105161-1109414:1
so has part: feature:1105161-1109414:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1105161-1109414:1:exon

AWJ20_4045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SIN3
locus tag: AWJ20_4045
inference: similar to AA sequence:KEGG_Orthology:K11644
codon start: 1
product: transcriptional regulator SIN3
translation: MDPNPIRVTTPMGTTSRPDGEPTIPYPGDGRWGGPPQGPGQGLPPVAGQPQLQGPGQVQVLEQQQVQPPGVPGQQPQGPHPQYQRVPSVTELGPGGAGGLPPQLQQPQQPPQQPGQQQPQYPGYLAEQQQQQQQQQQQQQQQQQQQQQQQQQQQHPMGPPDPQTQPFNSNGAMSELHAAANGGRPPMMTEQQRRQGGGPVEFNHAINYVNKIKNRFASQPEIYKNFLEILQTYQREQLRIAEVYTQVTLLFKEAPDLLEDFKQFLPDTSQPQGQMGPGAGGQEAMRLPPVGNFAPPGSIGAGGPAAAIGRDAGIGPGGKKKKGGATNAEQAYQQQQQQQQQQLQMQQQQQAISQQYGGYNIDSNNGVPVSSLRSGGPTIAGTGRGGKGKGAGGNMMIREPSPTLVPAIPEPLPPPSRSGGLHDEIAFFDKVKKFIGNKQTYNEFLKIINLFTQKIIDKNVLVERVDGFIGNNKELMDWFKRFVKYEGKPLHIENIVHKKHNLDLSLCRSYGPSYRLLPKSETLMPCSGRDEMCWEVLNDEWVVHPTWASEDSGFVSHRKNQYEEILYRVEEERHEYDYYIGSNLRTIQTLETIANRIANLTNEEKAIFKLQPKLGTDSTIYQKIIRKIYDKEKGLEVIEALHENPAVAVPIVLRRLKQKDEEWKRAHREWNKVWRETEQKIFYKSLDHIGLTFKQTDKKLLTTRSLVSEITTVKAEQNSKRKNPALPLPKSQLVFKMADNDVLLDILRLVLSFLEHGGSYSSNDRERMEAFFRSFLELFFSLPPNLISERFPENEGRKSSSPEAEDESKTDGGAAATAAGAVSNGSTGAGGSKKRAREPSGDLLRDVLKKSRFNGRADLSPSAEVELDTETDSPAETPVPSAEDTTGAENTNIPRFGDSEDAWLKHAQTSPSPELGAKNDNQKREVFNLFANTTIYVFVRILQILYDRLEEVKGYESLVSEEIANSFNVDFANDLGLYDTKLADMGLRFDSKDCYGQLLSLSERLIEGEVEHQWFEEAIRQAYRNRAYKFYTIDKIVQALVKHVHAIVGDQKSSDVLVLFQADRVEPLSDIKKQIAYRMQVKKIIGSDESLFRIDWNDEEKRIGFQFLGNYDLTMRDIKKAEDKWNYYLTSYMMSVPTEGVALDRIKAPLLYRSMIELVDENYPFVIIEQGLMARVCMNTYKLFFEAGTVDFFTRPGVDNSVLRTPAVLEGRKNRWSSIIDGPDGWKSGLSETDIKNTEDRFKIWEEQGPEAFEKWEAPVVAVEPEATANGTSDEQTNQTEAAVVPTGETTVDEAKPLEAPADAMEVETTSNGVKAADDTTSEPAAGEPSSEKSEVVAPESKLTTDDEPKPKLDASSEVKSENDSKPEPSAGEQEASAAAATETSSPSSAPTSTTNPAGDADQQPPKAADGDVEMSG
SIO_010081: AWJ20_4045
subclass of: SO_0000673
so part of: AWJ20_4045
location: 1105161..1109414
location: region:1105161-1109414:1
so has part: feature:1105161-1109414:1:exon

XP_018733719.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1105161-1109414:1:exon

AWJ20_4046
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PFA4
locus tag: AWJ20_4046
so part of: sequence
location: complement(<1112750..>1113700)
location: region:1112750-1113700:-1
so has part: feature:1112750-1113700:-1:exon
subclass of: SO_0000010

30036135
type: Gene
SIO_000068: ncbigene

position:1112750:-1
position: 1112750
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1113700:-1
position: 1113700
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1112750-1113700:-1:exon

AWJ20_4046
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PFA4
locus tag: AWJ20_4046
product: Pfa4p
transcript id: XM_018881096.1
SIO_010081: AWJ20_4046
subclass of: SO_0000673
so part of: AWJ20_4046
location: complement(<1112750..>1113700)
location: region:1112750-1113700:-1
so has part: feature:1112750-1113700:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1112750-1113700:-1:exon

AWJ20_4046
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PFA4
locus tag: AWJ20_4046
inference: similar to AA sequence:KEGG_Orthology:K18932
note: Palmitoyltransferase with autoacylation activity; required for palmitoylation of amino acid permeases containing a C-terminal Phe-Trp-Cys site; required for modification of Chs3p; member of the DHHC family of putative palmitoyltransferases; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 16647879]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016409 - palmitoyltransferase activity [Evidence IMP] [PMID 16818716]; GO_function: GO:0019706 - protein-cysteine S-palmitoyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0018345 - protein palmitoylation [Evidence IMP] [PMID 16751107]; GO_process: GO:0018345 - protein palmitoylation [Evidence IMP] [PMID 16818716]
codon start: 1
product: Pfa4p
translation: MTSPGSPTSDFKPLPGEWTRWCIKCNGYKPERTHHCRQCKKCVLKMDHHCPWTYNCVGHANMPHFVRFLAWVLISASYAFYHVWARGFFLYSKRHLPLSTYDVTKTEIAFTIVLIPVVSFVLFSVGLLSIRVAWNMVEGQTQIETWEVERIETLVRRKLVQNVEFPYDLDPWTNVANAMGGNNPLAWMWPFGGPVGDGMHFEKNEAADDGSVWPPDHRDQGPPRSGSAGASSSPSGDIGIRTAAPRGHYPRTLGYMRHRGNGEYAEDDGDDGYDSDSEDEEVERLPEENDFYKRDQWMNFEGESIADFGVDVDTES
SIO_010081: AWJ20_4046
subclass of: SO_0000673
so part of: AWJ20_4046
location: complement(1112750..1113700)
location: region:1112750-1113700:-1
so has part: feature:1112750-1113700:-1:exon

XP_018733720.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1112750-1113700:-1:exon

AWJ20_4047
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ARG4
locus tag: AWJ20_4047
so part of: sequence
location: <1114610..>1116007
location: region:1114610-1116007:1
so has part: feature:1114610-1116007:1:exon
subclass of: SO_0000010

30036136
type: Gene
SIO_000068: ncbigene

position:1114610:1
position: 1114610
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1116007:1
position: 1116007
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1114610-1116007:1:exon

AWJ20_4047
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ARG4
locus tag: AWJ20_4047
product: argininosuccinate lyase ARG4
transcript id: XM_018881097.1
SIO_010081: AWJ20_4047
subclass of: SO_0000673
so part of: AWJ20_4047
location: <1114610..>1116007
location: region:1114610-1116007:1
so has part: feature:1114610-1116007:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1114610-1116007:1:exon

AWJ20_4047
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ARG4
locus tag: AWJ20_4047
inference: similar to AA sequence:KEGG_Orthology:K01755
note: Argininosuccinate lyase; catalyzes the final step in the arginine biosynthesis pathway; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 205532]; GO_function: GO:0004056 - argininosuccinate lyase activity [Evidence IEA,IEA]; GO_function: GO:0004056 - argininosuccinate lyase activity [Evidence IDA] [PMID 4578972]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0042450 - arginine biosynthetic process via ornithine [Evidence IEA]; GO_process: GO:0042450 - arginine biosynthetic process via ornithine [Evidence IDA] [PMID 4578972]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]
codon start: 1
product: argininosuccinate lyase ARG4
translation: MSSEQPAELKLWGGRFTGGTDPLMELYNASLPYDKKMYVADLEGTRVYTSALHKVGLLNDHELSEIHRGLKLVEAEWAEGKFVEKPGDEDIHTANERRLGELIGRDISGKVHTGRSRNDQVATDMRLYVREELAKIRAILVGLIKVFVSRAEKEMDILMPGYTHLQRAQPIRWSHWLSSHATYLANDLERLDQVIKRVNRSPLGAGALAGHPYGVDREYIADNLGFESVIGNSLTAVADRDFVVETLFWGSLVLNHLSKFSEDLIIYSTAEFGFIKLADAYSTGSSLMPQKKNPDSLELLRGKSGRVFGQLAGFMMSLKATPSTYNKDLQEDKEPLFDCLTTVSHSLSIATGVISTLSVDAAKMRAALTMDMLATDLADYLVRKGVPFRETHHISGEAVATSEKLGLSGIDQLTLEQYKQIDARFDADVVNVFNFETSVERRTATGGTAKSAVLAQLKNIASSLN
SIO_010081: AWJ20_4047
subclass of: SO_0000673
so part of: AWJ20_4047
location: 1114610..1116007
location: region:1114610-1116007:1
so has part: feature:1114610-1116007:1:exon

XP_018733721.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1114610-1116007:1:exon

AWJ20_4048
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_4048
so part of: sequence
location: <1117079..>1118902
location: region:1117079-1118902:1
so has part: feature:1117079-1118902:1:exon
subclass of: SO_0000010

30036137
type: Gene
SIO_000068: ncbigene

position:1117079:1
position: 1117079
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1118902:1
position: 1118902
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1117079-1118902:1:exon

AWJ20_4048
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_4048
product: 1-phosphatidylinositol-4-phosphate 5-kinase
transcript id: XM_018881098.1
SIO_010081: AWJ20_4048
subclass of: SO_0000673
so part of: AWJ20_4048
location: <1117079..>1118902
location: region:1117079-1118902:1
so has part: feature:1117079-1118902:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1117079-1118902:1:exon

AWJ20_4048
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_4048
inference: similar to AA sequence:KEGG_Orthology:K00889
note: Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]
codon start: 1
product: 1-phosphatidylinositol-4-phosphate 5-kinase
translation: MGAFFFTNGDYCPSNGTHKVPRRPVLSDVHCGVSVPKYGACAQLESRRPARRSAFAYHKVLILECSPDDSGVSVGSDETLNEPTIWKPVDIVSEQAYCEESSNISSAPIDNDDDNSSEWSFETGDEAAFTTRQIETAWSEEDTEATWYAPAASWALSGFPIEIYENDSTPESHGEVTLVELPLETPRSDLAESEEITPAKVAETPCAIADIPTSNPSIDSLVAEIIAVATLYKNLPQLIVSGGLQADSEFELPKTAPLALSKPIAQTPSDDLVIEEVDKSKTPLLLTRAKAKLTSFTGHASPITKSTLMFNGIQTAVYATPLSSHENLTMENKKYRLDGGAIIKAYSPIIYQSIRTLCGIDCHEFLNSFVLQSDLTKTKSPGKSGSDFLFTPDGKYIIKTIKRKEHNVIANAEFLADYYNHVKAHPSSQLPFYLGNYTLVAGGKKTHFVIMKNLLQKETQLIYDLKGSTHDRRAGARKDNRGRVVFKDLDWTDKDEAISMSQEDRDKLMVQVSKDVDFLKRHNIMDYSLLVGLQSDTRTCQQQPVIGMIDTLCPFSWRKKAETISKSLIFGSSAIDVVHPSKYGARFLNFVQSAVVPGPGRSVSTRC
SIO_010081: AWJ20_4048
subclass of: SO_0000673
so part of: AWJ20_4048
location: 1117079..1118902
location: region:1117079-1118902:1
so has part: feature:1117079-1118902:1:exon

XP_018733722.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1117079-1118902:1:exon

AWJ20_4049
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4049
so part of: sequence
location: <1120783..>1121862
location: region:1120783-1121862:1
so has part: feature:1120783-1121862:1:exon
subclass of: SO_0000010

30036138
type: Gene
SIO_000068: ncbigene

position:1120783:1
position: 1120783
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1121862:1
position: 1121862
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1120783-1121862:1:exon

AWJ20_4049
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4049
product: hypothetical protein
transcript id: XM_018881099.1
SIO_010081: AWJ20_4049
subclass of: SO_0000673
so part of: AWJ20_4049
location: <1120783..>1121862
location: region:1120783-1121862:1
so has part: feature:1120783-1121862:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1120783-1121862:1:exon

AWJ20_4049
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4049
codon start: 1
product: hypothetical protein
translation: MVDTTKVQVLLVGSGGVGTIASLALEQSHQVEVTSVIRSDYDIVVEKGFTIESIDYGNLTGWRPTRVVKTVQEAVNVANGRPYDYIVVCTKVLPEIFKTEDLIRPAVQDAKTIIVLIQNGIDIEKSVSEAFPANVVLSGVSMIGSTNYGGKIVQFEHDKLGVGYYSSETTDSKHSKDQLEAEAKKFVDLYSVACKNCTYYPDLKRARWRKLVYNSTINTICALTQVDTGRAYLSQLDHALIYPAMAEIITIAETALGEPLDKGIDKIMLESDDGFYYKPSMQVDVDKGNPIEVEAILGNPLRTAKELNIKTPVLTVVYNLLRALQFRLMESRGYITVPENPSRKVSAPLLEPTTLPIEP
SIO_010081: AWJ20_4049
subclass of: SO_0000673
so part of: AWJ20_4049
location: 1120783..1121862
location: region:1120783-1121862:1
so has part: feature:1120783-1121862:1:exon

XP_018733723.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1120783-1121862:1:exon

AWJ20_4050
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: IME2
locus tag: AWJ20_4050
so part of: sequence
location: <1124805..>1126031
location: region:1124805-1126031:1
so has part: feature:1124805-1126031:1:exon
subclass of: SO_0000010

30036140
type: Gene
SIO_000068: ncbigene

position:1124805:1
position: 1124805
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1126031:1
position: 1126031
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1124805-1126031:1:exon

AWJ20_4050
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: IME2
locus tag: AWJ20_4050
product: protein kinase IME2
transcript id: XM_018881101.1
SIO_010081: AWJ20_4050
subclass of: SO_0000673
so part of: AWJ20_4050
location: <1124805..>1126031
location: region:1124805-1126031:1
so has part: feature:1124805-1126031:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1124805-1126031:1:exon

AWJ20_4050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: IME2
locus tag: AWJ20_4050
inference: similar to AA sequence:KEGG_Orthology:K12765
codon start: 1
product: protein kinase IME2
translation: MDCMDGTLQDFILSQDGIPPDPSIYQNILKQVLKGLDHIHSHQFIHRDIKPENILITGDISGPNLVVKVADFNLSKDLSDGPDDAFTSYIGTRWYRAPEVLIKCERYSTAIDIWAFAAVAYEMATCCVLFEGRDQIHQLKLQVQLLGAPGPNSVCGEFQPLTNFLEEMSNDAYNEIIEVCDYLNFEPEYLRLFSGDDFWQQLSDECRGDIGSTVFGRKEKRADDENDPENQISSFNSFSGLNRFCTINHGGKLVPSYTGLSDFNKLLLPILRWDPSTRPTAGQLLCHPILADEYDHTAGPLTAVPPLVLERTDTAESDDEDQDDDYNIQAPNMINRPPLSLAEPNNAPHPQPSNSKNKTSAPFNPRLAQIAAAPNENSEEPFDDNHPSHILSPNHLYNYWASPYSFHY
SIO_010081: AWJ20_4050
subclass of: SO_0000673
so part of: AWJ20_4050
location: 1124805..1126031
location: region:1124805-1126031:1
so has part: feature:1124805-1126031:1:exon

XP_018733724.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1124805-1126031:1:exon

AWJ20_4051
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TEM1
locus tag: AWJ20_4051
so part of: sequence
location: complement(<1126288..>1126947)
location: region:1126288-1126947:-1
so has part: feature:1126288-1126947:-1:exon
subclass of: SO_0000010

30036141
type: Gene
SIO_000068: ncbigene

position:1126288:-1
position: 1126288
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1126947:-1
position: 1126947
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1126288-1126947:-1:exon

AWJ20_4051
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TEM1
locus tag: AWJ20_4051
product: Ras family GTPase TEM1
transcript id: XM_018881102.1
SIO_010081: AWJ20_4051
subclass of: SO_0000673
so part of: AWJ20_4051
location: complement(<1126288..>1126947)
location: region:1126288-1126947:-1
so has part: feature:1126288-1126947:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1126288-1126947:-1:exon

AWJ20_4051
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TEM1
locus tag: AWJ20_4051
inference: similar to AA sequence:KEGG_Orthology:K06682
note: GTP-binding protein of the Ras superfamily; involved in termination of M-phase; controls actomyosin and septin dynamics during cytokinesis; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 19154724]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 12048186]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 10688190]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0007096 - regulation of exit from mitosis [Evidence TAS] [PMID 16039591]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]
codon start: 1
product: Ras family GTPase TEM1
translation: MSTSQPSHGSTGASGSEPIDLAVPQKNSVSLKVGMIGDAQIGKTSLMVRYVEGSFDEDYIQTLGVNFMEKSVNIRNTEIKFSIWDLGGQREFVNMLPLVSNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPFLVGTKFDAFAEMPDADQEEISRQAKKFAKAMKASLVFCSTKEMINVQKIFKIVLSKAFQLKLNMNEYTETGEPLLIYQQWS
SIO_010081: AWJ20_4051
subclass of: SO_0000673
so part of: AWJ20_4051
location: complement(1126288..1126947)
location: region:1126288-1126947:-1
so has part: feature:1126288-1126947:-1:exon

XP_018733725.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1126288-1126947:-1:exon

AWJ20_4052
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4052
so part of: sequence
location: <1128006..>1128641
location: region:1128006-1128641:1
so has part: feature:1128006-1128641:1:exon
subclass of: SO_0000010

30036142
type: Gene
SIO_000068: ncbigene

position:1128006:1
position: 1128006
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1128641:1
position: 1128641
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1128006-1128641:1:exon

AWJ20_4052
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4052
product: hypothetical protein
transcript id: XM_018881103.1
SIO_010081: AWJ20_4052
subclass of: SO_0000673
so part of: AWJ20_4052
location: <1128006..>1128641
location: region:1128006-1128641:1
so has part: feature:1128006-1128641:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1128006-1128641:1:exon

AWJ20_4052
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4052
codon start: 1
product: hypothetical protein
translation: MIPLTETGETDADDSVTVMSKRLFHSLRPLGKNPYYFYDLAKKQPRQSFDPGHYSFGNLASTEERARQVFGDLGSRDASRMDALHKARTIAGVRVPEKPEEPTNCCMSGCVNCVWEMYKDDLEDWRAKRKEAKHRLLTDPKYASTKWPSDFGPEPPSRSIETNISEEAGELPLDDDEAWDGVDVNIKVFVETEKRLHALRRQRAATSSASL
SIO_010081: AWJ20_4052
subclass of: SO_0000673
so part of: AWJ20_4052
location: 1128006..1128641
location: region:1128006-1128641:1
so has part: feature:1128006-1128641:1:exon

XP_018733726.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1128006-1128641:1:exon

AWJ20_4053
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ILV5
locus tag: AWJ20_4053
so part of: sequence
location: <1131271..>1132494
location: region:1131271-1132494:1
so has part: feature:1131271-1132494:1:exon
subclass of: SO_0000010

30036143
type: Gene
SIO_000068: ncbigene

position:1131271:1
position: 1131271
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1132494:1
position: 1132494
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1131271-1132494:1:exon

AWJ20_4053
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ILV5
locus tag: AWJ20_4053
product: ketol-acid reductoisomerase
transcript id: XM_018881104.1
SIO_010081: AWJ20_4053
subclass of: SO_0000673
so part of: AWJ20_4053
location: <1131271..>1132494
location: region:1131271-1132494:1
so has part: feature:1131271-1132494:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1131271-1132494:1:exon

AWJ20_4053
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ILV5
locus tag: AWJ20_4053
inference: similar to AA sequence:KEGG_Orthology:K00053
note: Acetohydroxyacid reductoisomerase and mtDNA binding protein; involved in branched-chain amino acid biosynthesis and maintenance of wild-type mitochondrial DNA; found in mitochondrial nucleoids; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 10869431]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 18193418]; GO_function: GO:0050662 - coenzyme binding [Evidence IEA]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 18023287]; GO_function: GO:0004455 - ketol-acid reductoisomerase activity [Evidence IEA,IEA]; GO_function: GO:0004455 - ketol-acid reductoisomerase activity [Evidence IMP] [PMID 14124940]; GO_function: GO:0004455 - ketol-acid reductoisomerase activity [Evidence IMP] [PMID 3027658]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IMP] [PMID 14124940]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009097 - isoleucine biosynthetic process [Evidence IEA]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IGI] [PMID 18826960]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IMP] [PMID 7621838]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0009099 - valine biosynthetic process [Evidence IEA]
codon start: 1
product: ketol-acid reductoisomerase
translation: MSSKMLRTAARAARNARIATAPSEKRAFSALAKAAIARPTIAATTRVASGVASVEARRGLKQINFGGTEETVYERADWPREKLLDYFKNDTLALIGYGSQGHGQGLNLRDNGLNVIVGVRKDGASWQQAIDDGWVPGTNLFDVNEAINKGTIVMNLLSDAAQSETWPQIKPLLTEGKTLYFSHGFSPVFKDLTKVDTPKNIDVILVAPKGSGRTVRTLFKEGRGINSSYAVWQDVTGKAEEKAQALAVAVGSGYVYKTTFEREVHSDLYGERGCLMGGIHGMFLAQYEVLRERGHSPSEAFNETVEEATQSLYPLIGKYGMDYMYDACSTTARRGALDWSPRFKDALKPVFNQLYDSVLDGSETKRSLEFNSQKDYREKFEKELQEIRDLEIWRVGKEVRKLRPENN
SIO_010081: AWJ20_4053
subclass of: SO_0000673
so part of: AWJ20_4053
location: 1131271..1132494
location: region:1131271-1132494:1
so has part: feature:1131271-1132494:1:exon

XP_018733727.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1131271-1132494:1:exon

AWJ20_4054
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_4054
so part of: sequence
location: <1135285..>1137090
location: region:1135285-1137090:1
so has part: feature:1135285-1137090:1:exon
subclass of: SO_0000010

30036144
type: Gene
SIO_000068: ncbigene

position:1135285:1
position: 1135285
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1137090:1
position: 1137090
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1135285-1137090:1:exon

AWJ20_4054
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_4054
product: 1-phosphatidylinositol-4-phosphate 5-kinase
transcript id: XM_018881105.1
SIO_010081: AWJ20_4054
subclass of: SO_0000673
so part of: AWJ20_4054
location: <1135285..>1137090
location: region:1135285-1137090:1
so has part: feature:1135285-1137090:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1135285-1137090:1:exon

AWJ20_4054
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_4054
inference: similar to AA sequence:KEGG_Orthology:K00889
note: Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]
codon start: 1
product: 1-phosphatidylinositol-4-phosphate 5-kinase
translation: MGTFFLTNGDYRPSNGTHKVPRRPVLSDVHCGISVPKYGACAQQENRRPARRSAFAYHKVLILECSDDSGVSVGSDETLNEPTVWKPIDIVAEQTYCEFAPIYNDDDNSSEWSFETGDEAAFTTRQIETAWSEEDTEATWSAPAASWALSGCPIETDENEYTPESHGEVTLVESPSETSRSDLAESEEITPAKMAETPCAIADITTSSSSIDSLIAEIISVATLYKDLPQLIVSGGLQADSEFELLKTAPLALSKPITHTPSDDLVIQVEEVDKSKTPLLLTRAKAKLTSFSGRTAPITKSTLMFNGVQTAVYATPLSSHETLTMENKKYRLDGGAIIKAYSPIVYQSIRSLCGIDCHEFLNSFVLQSDLTKTKSPGKSGSDFLFTPDGKYIIKTIKRKEHNVIANSEFLADYYNHMKAHPSTQLPFYLGNYTLVAGGKKTHFIIMKNLLQKETQLIYDLKGSTHDRRAGPRKDNRGRVVFKDLDWTDKHEAISMSREDRDKLLVQVSEDVEFLKRHNIMDYSLLVGLQSGTRTCQQPVIGMIDTLCPFSWRKKAETISKSLIFGSSAIDVVHPSKYGARFLNFVQSAVVPGPDRSVSIRC
SIO_010081: AWJ20_4054
subclass of: SO_0000673
so part of: AWJ20_4054
location: 1135285..1137090
location: region:1135285-1137090:1
so has part: feature:1135285-1137090:1:exon

XP_018733728.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1135285-1137090:1:exon

AWJ20_4055
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ERB1
locus tag: AWJ20_4055
so part of: sequence
location: complement(<1138124..>1140604)
location: region:1138124-1140604:-1
so has part: feature:1138124-1140604:-1:exon
subclass of: SO_0000010

30036145
type: Gene
SIO_000068: ncbigene

position:1138124:-1
position: 1138124
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1140604:-1
position: 1140604
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1138124-1140604:-1:exon

AWJ20_4055
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ERB1
locus tag: AWJ20_4055
product: Erb1p
transcript id: XM_018881106.1
SIO_010081: AWJ20_4055
subclass of: SO_0000673
so part of: AWJ20_4055
location: complement(<1138124..>1140604)
location: region:1138124-1140604:-1
so has part: feature:1138124-1140604:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1138124-1140604:-1:exon

AWJ20_4055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ERB1
locus tag: AWJ20_4055
inference: similar to AA sequence:KEGG_Orthology:K14824
note: Constituent of 66S pre-ribosomal particles; forms a complex with Nop7p and Ytm1p that is required for maturation of the large ribosomal subunit; required for maturation of the 25S and 5.8S ribosomal RNAs; homologous to mammalian Bop1; GO_component: GO:0070545 - PeBoW complex [Evidence IDA,IPI] [PMID 16287855]; GO_component: GO:0005730 - nucleolus [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005654 - nucleoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0043021 - ribonucleoprotein complex binding [Evidence IEA]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IEA]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IEA,IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 11522832]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IPI] [PMID 16287855]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA,IEA]
codon start: 1
product: Erb1p
translation: MAKRKASELKQAESRVDSAKTKDEEEDVLALSGGLVAESDDDSDAEDRELEKLLGEEADEEDENEDDEEEEENEDEDDEEEDDEDEEEDEEDVDPRILKDLENIKFRSLSDDSEDESNVRYEPGSDGKLRPIRPEIDPVYDSDDTDGEETNTIGNIPISAYDKLPHIGYDIDGKRVMRPASASALDTLLESIDLPEGWTGLLDKNTGGGLKLSAEELDLIKKIQRGENPDDSVNPYEDTIEYFSSQTEVMPLTAIPEPKRRFIPSKHEAKRVMKIVRAIREGRIVLKSAEEKAKELEEATHYDIWADNADEIPDHIMTLRAPKLPPPTHDESYNPPEEYLPDEEEIEQWKNMDPADRERNYVPKKYGSLRRVPGYSEGVRERFERSLDLYLAPRVRRQKLNIDPDSLIPDLPSPKDLRPFPIKCATIFRGHVGKVRSVSFDPSGQFVATGGDDGTVRVWELLTGRELWRLDVLKHDNYDNQDESDDEDDEDQMKERASGEDHVEAVEWNPQTGTGLLAISAGENIYLVVPPVFDVEIENRGREIIEAGWGYASNGASGPSQVKSKDLREDGDDDEDEVEAAAAEAKKKIFAKWTKPVAKLSDNGVGVVVRCKRTVKKLSWHRRGDYFVTVSPEGANSAVLIHQLSKHSSQSPFRKSKGIVQDAMFHPFRPHLYVGTQRYVRIYDLAAQVLTKKLLPGVRWLSSFDIHPRGDNVITSSYDKRMTWHDLDLSSKPYKTLRYHEKAVRDVSFHKGGLPLFCSASDDGNINVFHGSVYDDMMKNPLLVPLKVLKGHEIKNSLGILNVVWHPKEAWLLSAGADGTARLWTA
SIO_010081: AWJ20_4055
subclass of: SO_0000673
so part of: AWJ20_4055
location: complement(1138124..1140604)
location: region:1138124-1140604:-1
so has part: feature:1138124-1140604:-1:exon

XP_018733729.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1138124-1140604:-1:exon

AWJ20_4056
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: HSH49
locus tag: AWJ20_4056
so part of: sequence
location: <1141005..>1141865
location: region:1141005-1141865:1
so has part: feature:1141005-1141865:1:exon
subclass of: SO_0000010

30036146
type: Gene
SIO_000068: ncbigene

position:1141005:1
position: 1141005
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1141865:1
position: 1141865
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1141005-1141865:1:exon

AWJ20_4056
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: HSH49
locus tag: AWJ20_4056
product: Hsh49p
transcript id: XM_018881107.1
SIO_010081: AWJ20_4056
subclass of: SO_0000673
so part of: AWJ20_4056
location: <1141005..>1141865
location: region:1141005-1141865:1
so has part: feature:1141005-1141865:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1141005-1141865:1:exon

AWJ20_4056
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: HSH49
locus tag: AWJ20_4056
inference: similar to AA sequence:KEGG_Orthology:K12831
note: U2-snRNP associated splicing factor; similar to the mammalian splicing factor SAP49; proposed to function as a U2-snRNP assembly factor along with Hsh155p and binding partner Cus1p; contains two RNA recognition motifs (RRM); GO_component: GO:0005686 - U2 snRNP [Evidence IDA] [PMID 15565172]; GO_component: GO:0005686 - U2 snRNP [Evidence IDA] [PMID 16314500]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 16618970]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 9436903]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 16314500]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP,IPI] [PMID 9436903]
codon start: 1
product: Hsh49p
translation: MSNRLARAGERNPALTVYVGNLHEEVDEELLYELGIQAGPVVNVHIPLDRVNGKNSGFGFLEYRSEKDVDYAAQILNGIMLFGQPLRVNKSQQEKANSIDVGAQVFVGSLDPLVDEKTLSDTFSVFGRLIRPATIMRDENGRSRGFGFISFADFESSDRAIESMNDQYLMNRKVQLNYAFKKDGKGERHGDEAERLLAAEAKKHNYSLTLGEGGVSSPGNSSIPKGPRASHSSRDDGPESDSDGDVLNDLSQSKKPRNRGRKRQPRTKHRDDLSGANAIPTGPKRG
SIO_010081: AWJ20_4056
subclass of: SO_0000673
so part of: AWJ20_4056
location: 1141005..1141865
location: region:1141005-1141865:1
so has part: feature:1141005-1141865:1:exon

XP_018733730.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1141005-1141865:1:exon

AWJ20_4057
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: STE50
locus tag: AWJ20_4057
so part of: sequence
location: complement(<1142101..>1143663)
location: region:1142101-1143663:-1
so has part: feature:1142101-1143663:-1:exon
subclass of: SO_0000010

30036147
type: Gene
SIO_000068: ncbigene

position:1142101:-1
position: 1142101
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1143663:-1
position: 1143663
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1142101-1143663:-1:exon

AWJ20_4057
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: STE50
locus tag: AWJ20_4057
product: Ste50p
transcript id: XM_018881108.1
SIO_010081: AWJ20_4057
subclass of: SO_0000673
so part of: AWJ20_4057
location: complement(<1142101..>1143663)
location: region:1142101-1143663:-1
so has part: feature:1142101-1143663:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1142101-1143663:-1:exon

AWJ20_4057
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: STE50
locus tag: AWJ20_4057
note: Protein involved in mating response; invasive/filamentous growth, and osmotolerance, acts as an adaptor that links G protein-associated Cdc42p-Ste20p complex to the effector Ste11p to modulate signal transduction; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9742096]; GO_function: GO:0032093 - SAM domain binding [Evidence IDA] [PMID 16337230]; GO_function: GO:0019887 - protein kinase regulator activity [Evidence IDA,IPI] [PMID 10397774]; GO_process: GO:0000161 - MAPK cascade involved in osmosensory signaling pathway [Evidence IMP,IPI] [PMID 9742096]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0007050 - cell cycle arrest [Evidence IEA]; GO_process: GO:0034605 - cellular response to heat [Evidence IMP] [PMID 12455951]; GO_process: GO:0007232 - osmosensory signaling pathway via Sho1 osmosensor [Evidence IMP] [PMID 11370856]; GO_process: GO:0000750 - pheromone-dependent signal transduction involved in conjugation with cellular fusion [Evidence IMP,IPI] [PMID 8793874]; GO_process: GO:0019236 - response to pheromone [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0001402 - signal transduction involved in filamentous growth [Evidence IMP,IPI] [PMID 9738877]
codon start: 1
product: Ste50p
translation: MAAFSSQRHSIGNSPLSSDSVMTWDCDTVGKWVSNLGLSSYAQSFIDNKISGDVLIYLDHEDLIDVGVKSVGHRLTILKSIYQLIVDGNIEVDHSHYVPPTVVERNSLGLSLSDSVLPGSGAATGSSNGIGSSNGASSSTNGAGNTGSHGPVDMSSSTNSIYSNNRAGVGSMSDVWAEKIITSFEVRDERISYAEAEIKRLMDGYVRLREDLLPIFRIVKESKPLPTPDAPLPSPGNTLTAGPSASQSQTPSSHGNTHAQPSPTIVPYANSPTPTSPPAFMTTFPPGSSNPVNSINNNINTSERGPLSASSISGHPSSASLQLQSNNNSASSSNLGVTASNQKKTGSSSKGMSPSMAPVNIKSPTGNLSEYYDDAATIRPTARVTRKASLNGIAPSFNNSSASTPISSAGGSSSSLNTPNSSSSTEPFKSFRVSMDDPCYKVLPAALRKYKINGDPRQYALLVCYGDQERLLGLEEKPLIIFKELQDAGKRPVFMLRHIEGSHSGAQAGVVVSGTPGGVL
SIO_010081: AWJ20_4057
subclass of: SO_0000673
so part of: AWJ20_4057
location: complement(1142101..1143663)
location: region:1142101-1143663:-1
so has part: feature:1142101-1143663:-1:exon

XP_018733731.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1142101-1143663:-1:exon

AWJ20_4058
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4058
so part of: sequence
location: complement(<1148799..>1151465)
location: region:1148799-1151465:-1
so has part: feature:1148799-1151465:-1:exon
subclass of: SO_0000010

30036148
type: Gene
SIO_000068: ncbigene

position:1148799:-1
position: 1148799
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1151465:-1
position: 1151465
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1148799-1151465:-1:exon

AWJ20_4058
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4058
product: hypothetical protein
transcript id: XM_018881109.1
SIO_010081: AWJ20_4058
subclass of: SO_0000673
so part of: AWJ20_4058
location: complement(<1148799..>1151465)
location: region:1148799-1151465:-1
so has part: feature:1148799-1151465:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1148799-1151465:-1:exon

AWJ20_4058
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4058
codon start: 1
product: hypothetical protein
translation: MSGELGSWADSDPESPPPVPRGSSGGGASVGASSSQENGGDGGGDGDTSQVSSESLDLNNSGSTGTSELWTDRSNGFDAQSNRLRRKTGFSQLPMASEGDLGPADTGSHVRSDVDGSSDPQSDNRAGSGAGGDIGTRRYNNGSGKGVDSAAESGLLYVTGGSSNHQPVANDSTGDKFVSDAKGSGDASKGNVAGSNREVGYGSMGDSLSGSGHVNRANRVFGSNTGSGVNRVNGANSSNGVNSNDASNGGNRETGSKGVNGVNGVNGRNSGNGANGVDDSNSSDGANGTVRLSKSQSPRVLGPKGFVKDVETSLEQEIINESSPLLHRLEDSLLGDSGNTGYTGGVSEDPDEPDSSSPYDDPLNSLSIRSLRVLLYVLTTLWSGWITLLIINVFSHISWLDEPSVSSAFTQLDMALMSLAQVISSLMFFRNTNSADRSIEYVTTAIVLLDLVVVLAVPSQRIKNGSKGGLITTVGSLVTFVLTPLTDRVVEYAGKRRDEGRIHQSVRGLPINMSSFSQYARMTALFFIRGLILVSVALISTNMVLETYDSAVLQPPGKIIPISLQNITYSPIPSPTPSPPYSASFFSPFSIYDESTPNANNNDTTTINNSTIGIHIYCTDINKDTTNPNLTVLLETGDSPALSFSSWALELHERGDIAQVCYWDRPGFGFSDQAPSPLSAGVVANILFETLNRTLDEELPSKYVLVSHDVGGLYSRIFASRHCSSIHSMVLVDNLHEDLFFRRNSPWQGFKYWIQGVFASLGYRNAFGIIFKREGPFHRVYGSAYQRQPKYFFAKLQEQLSARTRTKSEIIDSNASLASDIPILVITSSASIRTDSEWSDKQRQLTKLTSNTLAWEILDGPHDLWRNDATKHELQKLLLDDIKYSRRS
SIO_010081: AWJ20_4058
subclass of: SO_0000673
so part of: AWJ20_4058
location: complement(1148799..1151465)
location: region:1148799-1151465:-1
so has part: feature:1148799-1151465:-1:exon

XP_018733732.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1148799-1151465:-1:exon

AWJ20_4059
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4059
so part of: sequence
location: <1152565..>1153131
location: region:1152565-1153131:1
so has part: feature:1152565-1153131:1:exon
subclass of: SO_0000010

30036149
type: Gene
SIO_000068: ncbigene

position:1152565:1
position: 1152565
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1153131:1
position: 1153131
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1152565-1153131:1:exon

AWJ20_4059
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4059
product: hypothetical protein
transcript id: XM_018881110.1
SIO_010081: AWJ20_4059
subclass of: SO_0000673
so part of: AWJ20_4059
location: <1152565..>1153131
location: region:1152565-1153131:1
so has part: feature:1152565-1153131:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1152565-1153131:1:exon

AWJ20_4059
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4059
codon start: 1
product: hypothetical protein
translation: MGEPDSLPENLHSVGVKPIIDGQIFKVEGATLVSHYTPGHTDDHMVFWLEEEEALFSADNVLGGSTTVFSDLKVYLETLNKMAKIGNGKLGKIYPGHGPVIYDGPQVIKDYISHRKAREDQILELLNGSSEPLSLSDIAAELYKDISAEASAYIERGVLLHLDKLLQENRAFKDPDSGEWTSLSRAKL
SIO_010081: AWJ20_4059
subclass of: SO_0000673
so part of: AWJ20_4059
location: 1152565..1153131
location: region:1152565-1153131:1
so has part: feature:1152565-1153131:1:exon

XP_018733733.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1152565-1153131:1:exon

AWJ20_4060
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PSA1
locus tag: AWJ20_4060
so part of: sequence
location: complement(<1155794..>1157035)
location: region:1155794-1157035:-1
so has part: feature:1155794-1157035:-1:exon
subclass of: SO_0000010

30036151
type: Gene
SIO_000068: ncbigene

position:1155794:-1
position: 1155794
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1157035:-1
position: 1157035
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1155794-1157035:-1:exon

AWJ20_4060
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PSA1
locus tag: AWJ20_4060
product: mannose-1-phosphate guanylyltransferase
transcript id: XM_018881112.1
SIO_010081: AWJ20_4060
subclass of: SO_0000673
so part of: AWJ20_4060
location: complement(<1155794..>1157035)
location: region:1155794-1157035:-1
so has part: feature:1155794-1157035:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1155794-1157035:-1:exon

AWJ20_4060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PSA1
locus tag: AWJ20_4060
inference: similar to AA sequence:KEGG_Orthology:K00966
note: GDP-mannose pyrophosphorylase (mannose-1-phosphate guanyltransferase); synthesizes GDP-mannose from GTP and mannose-1-phosphate in cell wall biosynthesis; required for normal cell wall structure; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0004475 - mannose-1-phosphate guanylyltransferase activity [Evidence IEA]; GO_function: GO:0004475 - mannose-1-phosphate guanylyltransferase activity [Evidence IDA,IMP] [PMID 9195935]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA,IEA]; GO_process: GO:0009298 - GDP-mannose biosynthetic process [Evidence IEA]; GO_process: GO:0009298 - GDP-mannose biosynthetic process [Evidence IDA,IMP] [PMID 9195935]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000032 - cell wall mannoprotein biosynthetic process [Evidence IMP] [PMID 11055399]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 9195935]
codon start: 1
product: mannose-1-phosphate guanylyltransferase
translation: MSTKALILVGGGTRGTRFRPISLDTPKVLFPVAGKPMLSHAIDAVATLPSVKEIILFGFYEEYVFRDFIHDTVRQYPHLSIKYLREYKAMGTAGGLYHFRDEILKGSPQHFYVIHADVCSSFPLKELATFFEEKKAKAVILGTRVPAKIANNFGAIVADEDQKVVHYVEKPESHISTLINAGVYLFDKSFFQVMKEARQKKVQDANDHVYFSEDQNDQDILRLEQDVLVKFAEREELYVYETKDFWRQVKEAGSAVAVNSLYLQQLFQSNPKAPGLAAPSANIVPPVFIDPLAEVDVSAKLGPDVSIGPHAKIGKGARIKDSIILEHAQVKDNGVVLHSILCSGTKVGQWSRVEGSPNNHNTYTATTEKDGVRMQTVSILATNVSVADEVHVQNTIVLPHKEIKNDVKNEVIM
SIO_010081: AWJ20_4060
subclass of: SO_0000673
so part of: AWJ20_4060
location: complement(1155794..1157035)
location: region:1155794-1157035:-1
so has part: feature:1155794-1157035:-1:exon

XP_018733734.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1155794-1157035:-1:exon

AWJ20_4061
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: YME1
locus tag: AWJ20_4061
so part of: sequence
location: complement(<1160690..>1162867)
location: region:1160690-1162867:-1
so has part: feature:1160690-1162867:-1:exon
subclass of: SO_0000010

30036152
type: Gene
SIO_000068: ncbigene

position:1160690:-1
position: 1160690
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1162867:-1
position: 1162867
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1160690-1162867:-1:exon

AWJ20_4061
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: YME1
locus tag: AWJ20_4061
product: i-AAA protease YME1
transcript id: XM_018881113.1
SIO_010081: AWJ20_4061
subclass of: SO_0000673
so part of: AWJ20_4061
location: complement(<1160690..>1162867)
location: region:1160690-1162867:-1
so has part: feature:1160690-1162867:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1160690-1162867:-1:exon

AWJ20_4061
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: YME1
locus tag: AWJ20_4061
inference: similar to AA sequence:KEGG_Orthology:K08955
note: Catalytic subunit of the i-AAA protease complex; complex is located in the mitochondrial inner membrane; responsible for degradation of unfolded or misfolded mitochondrial gene products; serves as a nonconventional translocation motor to pull PNPase into the intermembrane space; also has a role in intermembrane space protein folding; mutation causes an elevated rate of mitochondrial turnover; GO_component: GO:0031942 - i-AAA complex [Evidence IDA] [PMID 16267274]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 8688560]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004176 - ATP-dependent peptidase activity [Evidence IMP] [PMID 15772085]; GO_function: GO:0004176 - ATP-dependent peptidase activity [Evidence IGI] [PMID 8688560]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0006515 - misfolded or incompletely synthesized protein catabolic process [Evidence IMP] [PMID 18843051]; GO_process: GO:0006457 - protein folding [Evidence IMP] [PMID 22993211]; GO_process: GO:0045041 - protein import into mitochondrial intermembrane space [Evidence IDA,IMP] [PMID 16966379]; GO_process: GO:0051604 -…
codon start: 1
product: i-AAA protease YME1
translation: MLSRSRFALGPLRMVASTGRRNAVMSRSQIRSFWTPFSQTSSSSSLSASPSTPATSATHLLSIKEQSANRSLTNPMVQADFYRNLLASNYPHLVVSRYETPGVGRNSECDALYVQALKVIGHTEKAEAIERSLMAQAQAQAQAQAQAAAAVSASAGFPSGPVVGSTTTPDGFNSVLNSPVGRGTRTDPVHIIINETALSSVLKWLKWLIPMGLAGWGLIVGLTFFTESASILKGAGSDIGSSKLDGANGSQSNVKFSDVHGVDEARAELEEIVDFLKDPSKFTGLGGKLPKGILLTGPPGTGKTLLARAVAGEAGVPFFFMSGSEFDELYVGVGAKRVRELFAAARAKAPAIVFIDELDAIGSKRNPKDHAYSKQTLNQLLVDLDGFSQTTGVIFIAATNFPEMLDKALTRPGRFDKIVHVELPDVRGRVAILKHHMKKVETAVDVDPTTIARGTSGFSGADIMNLVNQAAIFASQQKAVSVDMSHFEWAKDKILLGAARKTMVLTEESRRNTAFHEAGHAIMALYTPGATSLYKATILPRGSALGITFQLPEMDKYDQSKKELLARLDVCMGGKIAEEMVNGPENVTSGCSSDLKNATQVARAMVTSFGMCDTIGPVELAENWSDWSAETRHLAEQEIRNLLVTSENRTREMLKEKYVELERLANGLLEYETLDKDEIEKVVQGLKIEREKTVTNTVVRGNDIKDERSKGGTKVGLAGPGVKLG
SIO_010081: AWJ20_4061
subclass of: SO_0000673
so part of: AWJ20_4061
location: complement(1160690..1162867)
location: region:1160690-1162867:-1
so has part: feature:1160690-1162867:-1:exon

XP_018733735.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1160690-1162867:-1:exon

AWJ20_4062
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4062
so part of: sequence
location: <1161813..>1162091
location: region:1161813-1162091:1
so has part: feature:1161813-1162091:1:exon
subclass of: SO_0000010

30036153
type: Gene
SIO_000068: ncbigene

position:1161813:1
position: 1161813
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1162091:1
position: 1162091
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1161813-1162091:1:exon

AWJ20_4062
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4062
product: hypothetical protein
transcript id: XM_018881114.1
SIO_010081: AWJ20_4062
subclass of: SO_0000673
so part of: AWJ20_4062
location: <1161813..>1162091
location: region:1161813-1162091:1
so has part: feature:1161813-1162091:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1161813-1162091:1:exon

AWJ20_4062
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4062
codon start: 1
product: hypothetical protein
translation: MAGALARAAANNSRTRLAPTPTYNSSNSEPLIKKKGTPASPATALARRVLPVPGGPVRRIPLGSLPPKPVNLEGSFRKSTISSSSARASSTP
SIO_010081: AWJ20_4062
subclass of: SO_0000673
so part of: AWJ20_4062
location: 1161813..1162091
location: region:1161813-1162091:1
so has part: feature:1161813-1162091:1:exon

XP_018733736.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1161813-1162091:1:exon

AWJ20_4063
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4063
so part of: sequence
location: complement(<1170305..>1171174)
location: region:1170305-1171174:-1
so has part: feature:1170305-1171174:-1:exon
subclass of: SO_0000010

30036154
type: Gene
SIO_000068: ncbigene

position:1170305:-1
position: 1170305
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1171174:-1
position: 1171174
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1170305-1171174:-1:exon

AWJ20_4063
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4063
product: S-formylglutathione hydrolase
transcript id: XM_018881115.1
SIO_010081: AWJ20_4063
subclass of: SO_0000673
so part of: AWJ20_4063
location: complement(<1170305..>1171174)
location: region:1170305-1171174:-1
so has part: feature:1170305-1171174:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1170305-1171174:-1:exon

AWJ20_4063
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4063
inference: similar to AA sequence:KEGG_Orthology:K01070
note: Esterase that can function as an S-formylglutathione hydrolase; non-essential intracellular esterase; may be involved in the detoxification of formaldehyde, which can be metabolized to S-formylglutathione; similar to human esterase D; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 10427036]; GO_function: GO:0018738 - S-formylglutathione hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0018738 - S-formylglutathione hydrolase activity [Evidence IDA] [PMID 10427036]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0046294 - formaldehyde catabolic process [Evidence IEA]; GO_process: GO:0046294 - formaldehyde catabolic process [Evidence IMP] [PMID 10427036]
codon start: 1
product: S-formylglutathione hydrolase
translation: MAGFKTNSTIASCGGKLLKLNHESKVLKSAMDVNVFLPPAAVDGKKKVPVLFFLSGLTCTPQNCSEKGFFQSAAAQHGIAIVYPDTSPRGSDHPGENDSWDFGSGAGFYINATEKPWSDNYNMYDYVVSELPEALFEEFPQLDADRVSITGHSMGGHGALTLFLRNPGKYKSVSAFSPISNPINAPWGIKAFSGYFGEQNKAKWAEHDATELIKKYSGPSPEILIDVGTGDQFYKDKQLLPENLVEAANDSANYKGKVNLRLQPDYDHSYYFISSFAKDHVEHAAKYLL
SIO_010081: AWJ20_4063
subclass of: SO_0000673
so part of: AWJ20_4063
location: complement(1170305..1171174)
location: region:1170305-1171174:-1
so has part: feature:1170305-1171174:-1:exon

XP_018733737.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1170305-1171174:-1:exon

AWJ20_4064
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: DMA2
locus tag: AWJ20_4064
so part of: sequence
location: complement(<1171610..>1173238)
location: region:1171610-1173238:-1
so has part: feature:1171610-1173238:-1:exon
subclass of: SO_0000010

30036155
type: Gene
SIO_000068: ncbigene

position:1171610:-1
position: 1171610
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1173238:-1
position: 1173238
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1171610-1173238:-1:exon

AWJ20_4064
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: DMA2
locus tag: AWJ20_4064
product: ubiquitin-conjugating protein DMA2
transcript id: XM_018881116.1
SIO_010081: AWJ20_4064
subclass of: SO_0000673
so part of: AWJ20_4064
location: complement(<1171610..>1173238)
location: region:1171610-1173238:-1
so has part: feature:1171610-1173238:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1171610-1173238:-1:exon

AWJ20_4064
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: DMA2
locus tag: AWJ20_4064
note: Ubiquitin-protein ligase (E3); controls septin dynamics and spindle position checkpoint (SPOC) with ligase Dma1p by regulating recruitment of Elm1p to bud neck; regulates levels of eIF2 subunit Gcd11p, as well as abundance, localization, and ubiquitination of Cdk inhibitory kinase Swe1p; ortholog of human RNF8, similar to human Chfr; contains FHA and RING finger domains; DMA2 has a paralog, DMA1, that arose from the whole genome duplication; GO_component: GO:0032177 - cellular bud neck split septin rings [Evidence IMP] [PMID 23442799]; GO_component: GO:0005934 - cellular bud tip [Evidence IMP] [PMID 23442799]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA,IMP] [PMID 18202552]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0032186 - cellular bud neck septin ring organization [Evidence IGI] [PMID 22570619]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IGI] [PMID 15146058]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IGI] [PMID 22570619]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0031578 - mitotic spindle orientation checkpoint [Evidence IGI] [PMID 15146058]; GO_process: GO:0031578 - mitotic spindle orientation checkpoint [Evidence IGI] [PMID 22570619]; GO_process: GO:0051865 - protein autoubiquitination [Evidence IDA] [PMID 18202552]; GO_process: GO:0097271 - protein localization to bud neck [Evidence IGI] [PMID 22570619]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IGI] [PMID 21562220…
codon start: 1
product: ubiquitin-conjugating protein DMA2
translation: MIRQIRPLDIQSARLTSSDTISVPLPEGSSPMASPSSNASTPTSPVNDLSSTLNANSINNNNGGHYATLVNAPAGLNHGEPGPVVSHSSNITNGNSGDVTLNLFESSSGSTPSSPHFIASDSTTPVPGSTVVAGLGGLGGPRGSISNNSNNAGIGTTRADGSRDVIVTPTTYNASDASQTQHQHHQHTHSRPHSHSHSRSHSRSLSYTHQTQLEQQEQQQNGSQEIEDGFPNQIEIPSPEQMQVLSQVHASDSSTPSPDPAKYPYSIRLSPFVDHSSSMPAFYTGAVEREGRDGTVIKIGRFDNKRDQRTQGDENPHVSPIVFKSKVVSRSHAEFLVKDGGQWFVRDVRSSSGTFLNHIRLSLASEESRPFALKDGDVLQLGVDFRGGLEEAFKCIKVRVELNRSWQKKPNNFNISQLTNLRNLFTNPPGRSDDTADASGSKTRHENTQECAICLLPVSACQSLFIAPCSHSWHYKCIRPVIVKAYPHFLCPNCRAICDLEAEIEVPDLSHLEISQPSSTNGTNSGAANGSTANGINTTLTS
SIO_010081: AWJ20_4064
subclass of: SO_0000673
so part of: AWJ20_4064
location: complement(1171610..1173238)
location: region:1171610-1173238:-1
so has part: feature:1171610-1173238:-1:exon

XP_018733738.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1171610-1173238:-1:exon

AWJ20_4065
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MLS1
locus tag: AWJ20_4065
so part of: sequence
location: <1176319..>1177995
location: region:1176319-1177995:1
so has part: feature:1176319-1177995:1:exon
subclass of: SO_0000010

30036156
type: Gene
SIO_000068: ncbigene

position:1176319:1
position: 1176319
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1177995:1
position: 1177995
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1176319-1177995:1:exon

AWJ20_4065
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MLS1
locus tag: AWJ20_4065
product: malate synthase MLS1
transcript id: XM_018881117.1
SIO_010081: AWJ20_4065
subclass of: SO_0000673
so part of: AWJ20_4065
location: <1176319..>1177995
location: region:1176319-1177995:1
so has part: feature:1176319-1177995:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1176319-1177995:1:exon

AWJ20_4065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MLS1
locus tag: AWJ20_4065
inference: similar to AA sequence:KEGG_Orthology:K01638
note: Malate synthase, enzyme of the glyoxylate cycle; involved in utilization of non-fermentable carbon sources; expression is subject to carbon catabolite repression; localizes in peroxisomes during growth on oleic acid, otherwise cytosolic; can accept butyryl-CoA as acyl-CoA donor in addition to traditional substrate acetyl-CoA; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11846793]; GO_component: GO:0009514 - glyoxysome [Evidence IEA,IEA]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 11846793]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 2211514]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004474 - malate synthase activity [Evidence IEA,IEA]; GO_function: GO:0004474 - malate synthase activity [Evidence IMP] [PMID 23642236]; GO_function: GO:0004474 - malate synthase activity [Evidence IMP] [PMID 8878673]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006097 - glyoxylate cycle [Evidence IEA,IEA,IEA]; GO_process: GO:0006097 - glyoxylate cycle [Evidence IMP] [PMID 23642236]; GO_process: GO:0006097 - glyoxylate cycle [Evidence IMP] [PMID 8878673]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
codon start: 1
product: malate synthase MLS1
translation: MNGIEIFAPIDSSHQLWPEATAPAKIITKSALEFVATLQRTHGKTRKELLEARNVRQQAIDKGTASLGLLDSTAHIRNDASWKGASLAPGLEDRRVEITGPPERKMIVNALNADVSTYMSDFEDSLAPTWSNVTWGQAHLYDAIRGQIGFSDAKTGKQYDILSRPHRKPVTLIVRPRGWHMEEKHVLVDGEPVSASLFDFGLYFYHNAKQLISNGAGPYFYVPKMESHLEARLWNNVFVQAQDLLHIPQGTIRATALLETLPGAFEMEEIIYELRDHSSGLNCGRWDYIFSTIKTLKNDSSHILPDRADVTMSVPFMSAYVKKLVEVCHRRGVHAMGGMAAQIPIKNDIQANEAAMARVKADKLREVKAGHDGTWVAHPALASIANDIFNQYMPQPNQISFNPFTLDNYQPPTPSDLTNTHIDGGRITEAGIRKNIYIALCYMEAWLRGQGCVPIDYLMEDAATAEVSRAQLYQWVIHKCTTQDTNKPITPELTTSILAEELASLEKTASQQNKFAQAARHLLPEVSGHQFNNFLTTLLYDDITTLSPVPVDPAQLEE
SIO_010081: AWJ20_4065
subclass of: SO_0000673
so part of: AWJ20_4065
location: 1176319..1177995
location: region:1176319-1177995:1
so has part: feature:1176319-1177995:1:exon

XP_018733739.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1176319-1177995:1:exon

AWJ20_4066
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: OLA1
locus tag: AWJ20_4066
so part of: sequence
location: complement(<1179552..>1180280)
location: region:1179552-1180280:-1
so has part: feature:1179552-1180280:-1:exon
subclass of: SO_0000010

30036157
type: Gene
SIO_000068: ncbigene

position:1179552:-1
position: 1179552
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1180280:-1
position: 1180280
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1179552-1180280:-1:exon

AWJ20_4066
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: OLA1
locus tag: AWJ20_4066
product: Ola1p
transcript id: XM_018881118.1
SIO_010081: AWJ20_4066
subclass of: SO_0000673
so part of: AWJ20_4066
location: complement(<1179552..>1180280)
location: region:1179552-1180280:-1
so has part: feature:1179552-1180280:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1179552-1180280:-1:exon

AWJ20_4066
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: OLA1
locus tag: AWJ20_4066
inference: similar to AA sequence:KEGG_Orthology:K06942
note: P-loop ATPase with similarity to human OLA1 and bacterial YchF; identified as specifically interacting with the proteasome; null mutant displays increased translation rate and increased readthrough of premature stop codons; protein abundance increases in response to hydrogen peroxide and to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10684247]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 17430889]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0043023 - ribosomal large subunit binding [Evidence IEA]; GO_function: GO:0043022 - ribosome binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]
codon start: 1
product: Ola1p
translation: MEFVIKAIELANKAQRGGNPAVVKAKKEEIATAEKVLAWLEDGKRVANGQWTNSEIAIINTLTLLTAKPSVYIVNVSEEDYILGADDQGTQWMKEINQWVNDNSPGDRVVPVSIGLEARLAGLDQATVDAELKDLDTQSALPIAIQELRKALHLISYFTCGKDEVREWTIRKGTKAPQAAGIIHKDLEKTFILANVTKYDDLVAANGDDSVIKASGQLSQKGKDYVVEDGDVVHFKSAAARK
SIO_010081: AWJ20_4066
subclass of: SO_0000673
so part of: AWJ20_4066
location: complement(1179552..1180280)
location: region:1179552-1180280:-1
so has part: feature:1179552-1180280:-1:exon

XP_018733740.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1179552-1180280:-1:exon

AWJ20_4067
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4067
so part of: sequence
location: complement(<1181633..>1182160)
location: region:1181633-1182160:-1
so has part: feature:1181633-1182160:-1:exon
subclass of: SO_0000010

30036158
type: Gene
SIO_000068: ncbigene

position:1181633:-1
position: 1181633
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1182160:-1
position: 1182160
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1181633-1182160:-1:exon

AWJ20_4067
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4067
product: hypothetical protein
transcript id: XM_018881119.1
SIO_010081: AWJ20_4067
subclass of: SO_0000673
so part of: AWJ20_4067
location: complement(<1181633..>1182160)
location: region:1181633-1182160:-1
so has part: feature:1181633-1182160:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1181633-1182160:-1:exon

AWJ20_4067
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4067
codon start: 1
product: hypothetical protein
translation: MPFVLAKQNNWTEEFRFEIQNTFKNLRDGVNHAGNEDIAPTDAFMWEVFTTKKYYDNGEVKQIGHIYTPWPSWVISASTDLTGNEAGKKTIQSLLLAINEGIAYFNKNHSEAVEYITGNLDYSAQDASAWIETVTFADDVSKVDQKTVISNTVNLLQSAGVLDAKAESADYLSLV
SIO_010081: AWJ20_4067
subclass of: SO_0000673
so part of: AWJ20_4067
location: complement(1181633..1182160)
location: region:1181633-1182160:-1
so has part: feature:1181633-1182160:-1:exon

XP_018733741.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1181633-1182160:-1:exon

AWJ20_4068
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4068
so part of: sequence
location: complement(<1182300..>1182536)
location: region:1182300-1182536:-1
so has part: feature:1182300-1182536:-1:exon
subclass of: SO_0000010

30036159
type: Gene
SIO_000068: ncbigene

position:1182300:-1
position: 1182300
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1182536:-1
position: 1182536
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1182300-1182536:-1:exon

AWJ20_4068
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4068
product: hypothetical protein
transcript id: XM_018881120.1
SIO_010081: AWJ20_4068
subclass of: SO_0000673
so part of: AWJ20_4068
location: complement(<1182300..>1182536)
location: region:1182300-1182536:-1
so has part: feature:1182300-1182536:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1182300-1182536:-1:exon

AWJ20_4068
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4068
codon start: 1
product: hypothetical protein
translation: MTFERMSNWTNSTQLDISIGLTEAFVAGIGKGSDWYKIVGTYVSSPLNWAISTGAKRTDINTVEDIRGKTLGISRIGR
SIO_010081: AWJ20_4068
subclass of: SO_0000673
so part of: AWJ20_4068
location: complement(1182300..1182536)
location: region:1182300-1182536:-1
so has part: feature:1182300-1182536:-1:exon

XP_018733742.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1182300-1182536:-1:exon

AWJ20_4069
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: OTU2
locus tag: AWJ20_4069
so part of: sequence
location: complement(<1183720..>1184400)
location: region:1183720-1184400:-1
so has part: feature:1183720-1184400:-1:exon
subclass of: SO_0000010

30036160
type: Gene
SIO_000068: ncbigene

position:1183720:-1
position: 1183720
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1184400:-1
position: 1184400
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1183720-1184400:-1:exon

AWJ20_4069
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: OTU2
locus tag: AWJ20_4069
product: Otu2p
transcript id: XM_018881121.1
SIO_010081: AWJ20_4069
subclass of: SO_0000673
so part of: AWJ20_4069
location: complement(<1183720..>1184400)
location: region:1183720-1184400:-1
so has part: feature:1183720-1184400:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1183720-1184400:-1:exon

AWJ20_4069
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: OTU2
locus tag: AWJ20_4069
inference: similar to AA sequence:KEGG_Orthology:K18342
note: hypothetical protein; may interact with ribosomes, based on co-purification experiments; member of the ovarian tumor-like (OTU) superfamily of predicted cysteine proteases; shows cytoplasmic localization; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]
codon start: 1
product: Otu2p
translation: MAEQLLAQLELEEKQAQEEAQAKKAVAAASSQSQQGSGGPKRNRRKEKIAQREAAAKKLSEEAAQEASTQPDLRKIELENLDALCKIHNLVQHDIQPDGHCLFASIADQLAQRRDIKKSVQELRKEAAGYIRQNPDTFGPFLFDENTLTMREIGPYCEELETTAIWGGDMEILALANVYDSCISVMFSGRSTLKVNEEGSQPELKLVYYKHSFGLGEHYNSLRDAN
SIO_010081: AWJ20_4069
subclass of: SO_0000673
so part of: AWJ20_4069
location: complement(1183720..1184400)
location: region:1183720-1184400:-1
so has part: feature:1183720-1184400:-1:exon

XP_018733743.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1183720-1184400:-1:exon

AWJ20_4070
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4070
so part of: sequence
location: complement(<1185162..>1187309)
location: region:1185162-1187309:-1
so has part: feature:1185162-1187309:-1:exon
subclass of: SO_0000010

30036162
type: Gene
SIO_000068: ncbigene

position:1185162:-1
position: 1185162
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1187309:-1
position: 1187309
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1185162-1187309:-1:exon

AWJ20_4070
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4070
product: Pentatricopeptide repeat-containing protein At1g62910
transcript id: XM_018881123.1
SIO_010081: AWJ20_4070
subclass of: SO_0000673
so part of: AWJ20_4070
location: complement(<1185162..>1187309)
location: region:1185162-1187309:-1
so has part: feature:1185162-1187309:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1185162-1187309:-1:exon

AWJ20_4070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4070
codon start: 1
product: Pentatricopeptide repeat-containing protein
translation: MLAQRFVGRRIANVAVSSSRLELGLSRVGVSSHRRYQSVVAGAADSQDTGSVVEEPVTKNIDKVPKKSSNGKHFANGKNGNRQGQNLYQKIDRALISGNTNEALRIFKDEYNPGIFKSLERRGLHLRLFRAALKLKSKKGSKAVMEPKELFQKYLEGGAAVGWITSAVILTDVREGNPALGLQTWVEYLENLNTIGLVTSEGNKEAAWSALVAYVANCVKEKQPISTELALKLVPIKDIPLGRQLMDIEEFRRLNHTSRKEILEGLQQIRMDSLDVSSLEFLTSLPSDRPLELEAMYKEALAKVGDNGLPESVYARFISCFAESTRVKDAFEVWNHMIEHEVEPTILSWNSLLRAGALSRVDKTEVFTKLWGEMVESGVKPNSESFRSLIDFCFRTGKPEQALQVLDRIQEGKEEGVTVTLTMFNTVLDGLLRLGKVTEAEGLLREGLTQGYSPNVVTYNYFIRSYIQLGQFEKANAIVQEMIAANVRPDISTYTNIIDSVFKQARKQGFDPQQQIYDLFVEMGREGIKTNAISITAIISGLTKTSNDIESARTLFRIMLEKKITPNARTFGTLIDSELKFGDYQHALDYFNMMPKFGVPQGTPAFNQLIHWASYNKRVTEAHRLFKQLVKSTRTNPNKFTYTFILNGCYKNDGGSQTVESIAIANDVLKTLSKQEGYFDFGTDLPKLIPKLAALGATVPESVVQALEKKTTRVE
SIO_010081: AWJ20_4070
subclass of: SO_0000673
so part of: AWJ20_4070
location: complement(1185162..1187309)
location: region:1185162-1187309:-1
so has part: feature:1185162-1187309:-1:exon

XP_018733744.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1185162-1187309:-1:exon

AWJ20_4071
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4071
so part of: sequence
location: <1192110..>1194677
location: region:1192110-1194677:1
so has part: feature:1192110-1194677:1:exon
subclass of: SO_0000010

30036163
type: Gene
SIO_000068: ncbigene

position:1192110:1
position: 1192110
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1194677:1
position: 1194677
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1192110-1194677:1:exon

AWJ20_4071
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4071
product: hypothetical protein
transcript id: XM_018881124.1
SIO_010081: AWJ20_4071
subclass of: SO_0000673
so part of: AWJ20_4071
location: <1192110..>1194677
location: region:1192110-1194677:1
so has part: feature:1192110-1194677:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1192110-1194677:1:exon

AWJ20_4071
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4071
codon start: 1
product: hypothetical protein
translation: MTGYYKVEGDNLSSSKRDYEWSNTNTSPSQQRPKPTLPSINQLINSPASLSLRDSNDSLRWSMPRTPYTTTPLQSPSSAIFSSSNVNLPSIRNKLQSGFPDLSVGQIQNLPNSQTSCASGISPVPSANRGGRSVFPISGPTTPDQQVSHQLSDDGYYSKPVSETGYSVSIQNDGTRGSEGLPCPPPMPPKSRYEQQPYHKHQQHQYHQHHHEQHQQHQHQHQQQQHMGQMNHHGLVECQPPIMQPSMQPVIQHSMFHGPRQMHHGESQNSNYSLGTIQSLPPTLSGSTGTTSDNGNSNHIYGLGIYPVNQEGVVCNGMVVNTISGNSNVSRDYYDARYSQAQMQSYSRYCGDYQGMLDITSTTYQLQPIITSSKDIKRRTKTGCITCRKRRIKCDERHPTCLNCEKSKRVCIGYDPVFRNQVDKRRKKGASTWTGESGPKIVSHSSTTQNLTPVSDGIGNSFDLSHSNNTTGPTTSDSEESPGSGQRSSSVSYSNTPITIASNTGTPPSFASDQEKDRCRIKIASLLDAADVIECQKKSPVSDGEFISKIVVGKPTTKELDSGPFFEHNPPRWEDVCTYFTEKIAVHLDNLFNTTRFSDIAAGSIKKSGSDLSNRHSSKIGGSEDLAVLETIRQIFAILHPSAYVENLALDENAKLEELRITSNYKLLRCVLQLINSNRDTEFLPVAVEDYEIFLKVTILHQFIYGEVPLKRPANQDGTQSLGSPVSPRTEGEENRDNSSNNSMANKAQSIIKIDENINSEEMWKLLEYIRNGGSIDEQDLEAMAVLCQSNMNNKESTSVVEAALVAILLGLHYSSSTCSTSKSESRIRIRLLELSGTGTLSPFLRRLINMTLSL
SIO_010081: AWJ20_4071
subclass of: SO_0000673
so part of: AWJ20_4071
location: 1192110..1194677
location: region:1192110-1194677:1
so has part: feature:1192110-1194677:1:exon

XP_018733745.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1192110-1194677:1:exon

AWJ20_4072
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: KRE6
locus tag: AWJ20_4072
so part of: sequence
location: <1198660..>1200927
location: region:1198660-1200927:1
so has part: feature:1198660-1200927:1:exon
subclass of: SO_0000010

30036164
type: Gene
SIO_000068: ncbigene

position:1198660:1
position: 1198660
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1200927:1
position: 1200927
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1198660-1200927:1:exon

AWJ20_4072
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: KRE6
locus tag: AWJ20_4072
product: beta-glucan synthesis-associated protein KRE6
transcript id: XM_018881125.1
SIO_010081: AWJ20_4072
subclass of: SO_0000673
so part of: AWJ20_4072
location: <1198660..>1200927
location: region:1198660-1200927:1
so has part: feature:1198660-1200927:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1198660-1200927:1:exon

AWJ20_4072
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: KRE6
locus tag: AWJ20_4072
note: Type II integral membrane protein; required for beta-1,6 glucan biosynthesis; putative beta-glucan synthase; localizes to ER, plasma membrane, sites of polarized growth and secretory vesicles; functionally redundant with Skn1p; KRE6 has a paralog, SKN1, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 17893149]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 7929594]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 21193403]; GO_component: GO:0030427 - site of polarized growth [Evidence IDA] [PMID 21193403]; GO_component: GO:0030133 - transport vesicle [Evidence IDA] [PMID 21193403]; GO_function: GO:0015926 - glucosidase activity [Evidence IMP,ISS] [PMID 10601196]; GO_process: GO:0006078 - (1->6)-beta-D-glucan biosynthetic process [Evidence IMP,ISS] [PMID 7929594]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 7929594]
codon start: 1
product: beta-glucan synthesis-associated protein KRE6
translation: MVNPNLPPPPQGSYYPLDSDANSPYNPFNSETHSLASDMSENVLHSGSGGSSANLALNSSSSRAAPQQVIRDYGDEYDDEYDESNGGANRGITQNYNTPPAVPPHRPMATANSTGSSSSSSQGYPTGNGTGSNNGYHQPPHNGMGATPLSRNSSGSFIAMGSSEFDRYPHRISSAAPSINSASGAPLLRQQYGGVGPAGSLHPQSAGHYGPGMRNSTMSDRSGSSETSSMEHDYSGNNPFVVNADFSPFGGYPASSFPLHLDEKEADDYLHNPDPILDEKYNRKCQKMDKRGWGSVGGLLCLLIGGICLFIVYPVLTYSGVSIQKPAVTTQVFEVLTNYEYSHLQALRTNLVDKDTPQDAMTRTAKDGSQWQLVFSDEFNVEGRTFYDGDDQFWTAPDFNYAATQDLEWYSPDAATTANGTLVITLDAFKNHNLFYRSGMLQSWNKFCFTQGMLEVSVLLPGHGTTPGLWPGVWTLGNLARAGYSATSEGVWPYGYNSCDAGITPNQSSTDGISYLPGQRLNSCTCPGHDHPNEGTGRGAPEIDAIEGTVVSNPDNGVASQSLQLAPFDIWYMPNYDFIEIHNKSITAMNTYAGGPFQQAISGTTMLNTDWYEFGGANNYQSYGFEYLNDDVNGYIRWYVGHTPTYTLYAPAIGPNGNVGARQISKEPMSIILNLGISNSWTYIAWNDLVWPSHMRIDYVRLYQPSDQVSLTCDPPDYPTYDYIQDHLNAYSNPNLTSWNMAGYAFPPNKLTGNC
SIO_010081: AWJ20_4072
subclass of: SO_0000673
so part of: AWJ20_4072
location: 1198660..1200927
location: region:1198660-1200927:1
so has part: feature:1198660-1200927:1:exon

XP_018733746.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1198660-1200927:1:exon

AWJ20_4073
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: NFU1
locus tag: AWJ20_4073
so part of: sequence
location: <1201629..>1202486
location: region:1201629-1202486:1
so has part: feature:1201629-1202486:1:exon
subclass of: SO_0000010

30036165
type: Gene
SIO_000068: ncbigene

position:1201629:1
position: 1201629
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1202486:1
position: 1202486
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1201629-1202486:1:exon

AWJ20_4073
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: NFU1
locus tag: AWJ20_4073
product: Nfu1p
transcript id: XM_018881126.1
SIO_010081: AWJ20_4073
subclass of: SO_0000673
so part of: AWJ20_4073
location: <1201629..>1202486
location: region:1201629-1202486:1
so has part: feature:1201629-1202486:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1201629-1202486:1:exon

AWJ20_4073
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: NFU1
locus tag: AWJ20_4073
note: Protein involved in iron metabolism in mitochondria; similar to NifU, which is a protein required for the maturation of the Fe/S clusters of nitrogenase in nitrogen-fixing bacteria; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 10468587]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IMP,ISS] [PMID 10468587]; GO_process: GO:0006880 - intracellular sequestering of iron ion [Evidence IMP] [PMID 10588895]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 10468587]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 10588895]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 12065597]
codon start: 1
product: Nfu1p
translation: MYRVQRLNRLVQTVSGVASLAGSTGLRTAAGAGGRCYYHRPAVMGSRLQATKSRFVPLVSSRSMYIQTSATPNDDALKFLPSQEVLGDGARTIEYLSGRDAHSSPLARKLFAVDGVRSVMFGPDFITVEKDPESNWIYLKPEIFSLLTEHLSAGGPVVLEGTEAASDTLPSEEDSEVVSMIKELIDTRIRPAIQEDGGDLEYRGFTDDGIVQLKLRGACRSCDSSSVTLKNGIESMLMHYVEEVTGVEQVLDPEEEVSLKEFDKLEKKLEAAKQSAPEDQMAPSL
SIO_010081: AWJ20_4073
subclass of: SO_0000673
so part of: AWJ20_4073
location: 1201629..1202486
location: region:1201629-1202486:1
so has part: feature:1201629-1202486:1:exon

XP_018733747.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1201629-1202486:1:exon

AWJ20_4074
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PAB1
locus tag: AWJ20_4074
so part of: sequence
location: complement(<1203033..>1205888)
location: region:1203033-1205888:-1
so has part: feature:1203033-1205888:-1:exon
subclass of: SO_0000010

30036166
type: Gene
SIO_000068: ncbigene

position:1203033:-1
position: 1203033
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1205888:-1
position: 1205888
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1203033-1205888:-1:exon

AWJ20_4074
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PAB1
locus tag: AWJ20_4074
product: polyadenylate-binding protein
transcript id: XM_018881127.1
SIO_010081: AWJ20_4074
subclass of: SO_0000673
so part of: AWJ20_4074
location: complement(<1203033..>1205888)
location: region:1203033-1205888:-1
so has part: feature:1203033-1205888:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1203033-1205888:-1:exon

AWJ20_4074
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PAB1
locus tag: AWJ20_4074
inference: similar to AA sequence:KEGG_Orthology:K13126
note: Poly(A) binding protein; part of the 3'-end RNA-processing complex, mediates interactions between the 5' cap structure and the 3' mRNA poly(A) tail, involved in control of poly(A) tail length, interacts with translation factor eIF-4G; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15630021]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15769879]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 17908917]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 18981231]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 19470581]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15630021]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15769879]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 8631901]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008143 - poly(A) binding [Evidence IDA,IMP] [PMID 9193001]; GO_function: GO:0008428 - ribonuclease inhibitor activity [Evidence IDA] [PMID 11889048]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0060211 - regulation of nuclear-transcribed mRNA poly(A) tail shortening [Evidence IDA,IMP] [PMID 17766253]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IDA,IMP] [PMID 10357826]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: polyadenylate-binding protein
translation: MTTELNHNQQSGSGSASASASTSDGSAGVKTNASGVNGSNDVNDGANGGANGSGASVVSDQATAGVVEVESGVKRLNLDANHSSATSDVTTSDATTGATATSDATTDTSAASGPTTPNLANQPASKNSSPQSLSPENCTLYVRDLDPLVSEAHLFKVFSIYGTIKSIRVMKDNYTKRSLGYAFVNYTMAEYAQNALRDVDLGHKIIIKNRACKVLPFQRDPAKRHENAAKSLANTPSIQGASSATASGAAGATAATGTTDSASGTAETSGSSGETVSQSGSTSSNPPTRQASSTPTSDSNIFIKNLDPSITSAALYETFSVFGKIVSCKVATDEYGIPKGFAYVSFESREAAQDAIDRMNGVLMNDREVYVGFHVPKCERLNRLNQTFTNVFVKNIDSQVTEPEFRSLFAQYGEIDSISLPLNNDGSCRGFGFVNFKTHDQAVKAMEELNDTLFHNRLIYVNRAQKKYEREEELRREQAANMLAAASAQNDLLSPSSSQKHYQGVNLYVKYLNKSLDDEGLKNAFSKFGTITSAKIMTDDTGESRGFGFVCYSNPQEAQDAINAMHDQIFQGNRLYVALAMRKDTRNKMMYLPPLGPGGPGQFGYLPGHFAGHQLPGQLHPSQIQTQLHNQMAAAGQLPFMPMAAAVAAAAAAAAAGGSGPHPHQQHHHHHHQQQLAHLQQQQQGQPPNVSAGLNQRQFNPLPPFYYPLAAAAAAAVNANGAASPMGLPAGIPPTGLPGSVSQYGSLGGPAGPNANFGYPPGTPPSVNRSRSSTPLGYRSNGSNGAGGPSISNGNNHNTTTTNSSSNNTSRNPTGLKINGNNKYPNSQNTSPASSTASSNSSHSRNKYSRSNQQRELYGSSLSAAIASAATPEAENQVIGEAIYPHALNHPLIHGDTQLAGKITGMLLEQDKAELLKWVDDHPILNRRIQQAYEAYDDFIKTSASPLDSSA
SIO_010081: AWJ20_4074
subclass of: SO_0000673
so part of: AWJ20_4074
location: complement(1203033..1205888)
location: region:1203033-1205888:-1
so has part: feature:1203033-1205888:-1:exon

XP_018733748.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1203033-1205888:-1:exon

AWJ20_4075
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4075
so part of: sequence
location: <1209025..>1210143
location: region:1209025-1210143:1
so has part: feature:1209025-1210143:1:exon
subclass of: SO_0000010

30036167
type: Gene
SIO_000068: ncbigene

position:1209025:1
position: 1209025
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1210143:1
position: 1210143
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1209025-1210143:1:exon

AWJ20_4075
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4075
product: hypothetical protein
transcript id: XM_018881128.1
SIO_010081: AWJ20_4075
subclass of: SO_0000673
so part of: AWJ20_4075
location: <1209025..>1210143
location: region:1209025-1210143:1
so has part: feature:1209025-1210143:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1209025-1210143:1:exon

AWJ20_4075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4075
codon start: 1
product: hypothetical protein
translation: MIKSKPVMNLALKQVGEVLMKAIDVKDEVRGRGLAEQRKQAEKELNHDMKYSKETFPNLFVNSNRGNRGTGRGGVIGFIDREDGVRRCSRCLWEVPGRSTECPNCGLLVDAPEDQDEQDLIDDLDVDGDDYGESENDAHFRRRPLFSDEAEQDDDEDDEGDDVMADNSIESMDEYDEELDGGFIDDDSIADYLDEDDDDGEHTSSSRLFNRYLSDHATDNSHSHDDNDNESDSHDSFDLSLDHSDNEDEDDDMHLTRGDRNAVLGRGPGRRLGRGNSSTSSTNTITTGPRNRRSTTTTTTTTTSTTTRTRGQPVISISSDDEDDAELDQLGRSLAHRGRTVVLSEDEDDDSEPHEPLTRNGPGRAILIDDSD
SIO_010081: AWJ20_4075
subclass of: SO_0000673
so part of: AWJ20_4075
location: 1209025..1210143
location: region:1209025-1210143:1
so has part: feature:1209025-1210143:1:exon

XP_018733749.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1209025-1210143:1:exon

AWJ20_4076
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SCS3
locus tag: AWJ20_4076
so part of: sequence
location: <1211645..>1213468
location: region:1211645-1213468:1
so has part: feature:1211645-1213468:1:exon
subclass of: SO_0000010

30036168
type: Gene
SIO_000068: ncbigene

position:1211645:1
position: 1211645
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1213468:1
position: 1213468
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1211645-1213468:1:exon

AWJ20_4076
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SCS3
locus tag: AWJ20_4076
product: Scs3p
transcript id: XM_018881129.1
SIO_010081: AWJ20_4076
subclass of: SO_0000673
so part of: AWJ20_4076
location: <1211645..>1213468
location: region:1211645-1213468:1
so has part: feature:1211645-1213468:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1211645-1213468:1:exon

AWJ20_4076
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SCS3
locus tag: AWJ20_4076
note: Protein required for inositol prototrophy; required for normal ER membrane biosynthesis; ortholog of the FIT family of proteins involved in triglyceride droplet biosynthesis and homologous to human FIT2; disputed role in the synthesis of inositol phospholipids from inositol; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IMP] [PMID 22927826]; GO_process: GO:0006644 - phospholipid metabolic process [Evidence IMP] [PMID 7706223]
codon start: 1
product: Scs3p
translation: MSVRQPEVLADTTGASHLHGPTGGSPSLFHREPSPLLDSDRADTEASNTKSSGAVNNGSVQKKTVYSLGGSSVPSIDSAGGVSPSTNNSDFGNLSNLGNFSNLANIGDGLKSKSDRNSSSRVSNSSSNINSNSNSNSNTNSNSNFNINSNSDNGINKSNSNDISNSNNSSISNISNNGSNTIASSHSSQNGQNGHTHQTIGFSADDTSIHNTNSGNVNFTSTINNRDGSLGNNGGDNAGDSTLGNSQGVSSLANNRGDGGDSTSRLYNSSNPDLASDDELPPDGSSSAYSSSGKDATALLYKFRFIVLLVYPIIIFLGELVHISQPEGTYFSNKRNIFNVFFVKRAWLWTTLAFIAIVVRAKVATNSTSGPGIKSATQSGSILKAQSYAGYHLVLRYAAATFWWVLFTQWFFGLPIMDRVFVLTGGGCDGLVEKVAEAAMSTNPAPGDATSPLPPLPVTSNSPLNNLVSSAYCRAHGGTWVGGYDPSGHTFLLVHASLFLWFELLPLIVTGRATSTGTGIGIGSAIGTSTSGSSSGTTKPATTFTTSLSVRLVLGLLAFWAWMVLMTAVYFHSFLEKLLGLVCGYLEVLLVYVVAANHPQLGAILGV
SIO_010081: AWJ20_4076
subclass of: SO_0000673
so part of: AWJ20_4076
location: 1211645..1213468
location: region:1211645-1213468:1
so has part: feature:1211645-1213468:1:exon

XP_018733750.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1211645-1213468:1:exon

AWJ20_4077
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4077
so part of: sequence
location: <1215404..>1217140
location: region:1215404-1217140:1
so has part: feature:1215404-1217140:1:exon
subclass of: SO_0000010

30036169
type: Gene
SIO_000068: ncbigene

position:1215404:1
position: 1215404
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1217140:1
position: 1217140
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1215404-1217140:1:exon

AWJ20_4077
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4077
product: putative phosphotransferase
transcript id: XM_018881130.1
SIO_010081: AWJ20_4077
subclass of: SO_0000673
so part of: AWJ20_4077
location: <1215404..>1217140
location: region:1215404-1217140:1
so has part: feature:1215404-1217140:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1215404-1217140:1:exon

AWJ20_4077
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4077
note: Putative kinase; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]
codon start: 1
product: putative phosphotransferase
translation: MSASLDGYYIGVDVGTGSARACLIDSTGTIVALAAKDISRWSPKSSYWNQSSTQIWDSICYCTNKIVADAQIDPNLIKGIGFDATCSLVVIHEKEDKPVGVGPDFDNHDQNVILWMDHRAEKQTKEINKTGHNLLRYVGGGMSVEMEIPKAKWLKENMPKGVFDQCKLYDLADYLTHRATGSETRSFCSVVCKQGYVPVGVDGSVKGWSEEFLNTVGLPELVEDNFRRVGGVIGQNGQYLSAGETIGHLTEKSAKELGLSKSIAVGSGVIDAYAGWIGTVASKFGPDDSNDIIESSDVAFNRLAAVAGTSTCHLVMSKDAVFVPGVWGPYKNVMIPDRWLAEGGQSTTGELLHHVVTTHPASDELKTIAERMGVSTFAVLNSTLEQMAKDQGVPSVVYLAKHYFFYGDLYGNRSPIADSSMRGSIVGESMDVSLNALAIKYLAAVEFIGQQTRHIIEALNKAGHQVKEIYLSGGQCRNTLLTQLMATCTGMPVIIPKYIEASVVLGAAMLGAKAASEGKLTLWEVMSKLSGKGSVIEPQATDSVDYKLVHAKYEIFLDQAERQRKYRKIVDEALGENE
SIO_010081: AWJ20_4077
subclass of: SO_0000673
so part of: AWJ20_4077
location: 1215404..1217140
location: region:1215404-1217140:1
so has part: feature:1215404-1217140:1:exon

XP_018733751.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1215404-1217140:1:exon

AWJ20_4078
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RAD50
locus tag: AWJ20_4078
so part of: sequence
location: complement(<1217345..>1220932)
location: region:1217345-1220932:-1
so has part: feature:1217345-1220932:-1:exon
subclass of: SO_0000010

30036170
type: Gene
SIO_000068: ncbigene

position:1217345:-1
position: 1217345
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1220932:-1
position: 1220932
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1217345-1220932:-1:exon

AWJ20_4078
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RAD50
locus tag: AWJ20_4078
product: MRX complex DNA-binding subunit
transcript id: XM_018881131.1
SIO_010081: AWJ20_4078
subclass of: SO_0000673
so part of: AWJ20_4078
location: complement(<1217345..>1220932)
location: region:1217345-1220932:-1
so has part: feature:1217345-1220932:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1217345-1220932:-1:exon

AWJ20_4078
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RAD50
locus tag: AWJ20_4078
inference: similar to AA sequence:KEGG_Orthology:K10866
codon start: 1
product: MRX complex DNA-binding subunit
translation: MDKQVPLYLGASKAVLDYVIFCHQEDSLWPLAEATVVKKRFDEIFQVSKYTKAIESLKSLRKENISDISLAQKDVQYLEAAKERAEKAERRADMLTIQIDTYSTEADALKTRMEVVSAETNEFLERNQKFQENIYKLRTAREQRDHTNENIQRLSQGLEEMTEDEADLEKILNDFETRVNEKKNEKETLSQKIHASQAKLSNTRRKFNEMNLKEGQLRAELEAHNVRLAERKQFIADKSKVLNLMDIHREAVKDEALDDSLGEDSYIGKFEKSLERQLNRVQSEQEAMRLKGSEAENEISIRIQDLTTQKLRLEQKKLSNTESIRSFEKEIETLQTTINNIKIDEGTLEFEKSSVEGLVKGLELAQSRFNELEEKDELSKKKAELTEIEEEIEICNADIVASNQYADDRAKFKLLKDDLAKRRAGLTTSMEKHNTEFERVVGSAINAETVENDLKSAINRISANIDSQTESLEEAQKAVLQTQASIDHVTKEIADRETEAKELREEVQEIFRNLEFDEDTNPIVDYEAIISELDKDLTDAIHSVEGSSFMASYFKQAKHQAESQNVCFLCERRFETTQDRIRFIESVVERGDKIPAQETELKEQFQAAQENLDRAHNAGTSVKRVRSIELSEIPSKREELSKLREKLDIEQSEMQRRVEQTDLIKSDLKEVEGLRAVAGDIARHFEAINTLESQIESMERRFPSQGERGAKTRAAKEIHELLSDLNNRAKVVKSDIARLQTARETSLADINQMKNNVSAKRLELSKMESQLSEKINQEKRIVETKAKIGVAREAIKEANEQLDEMLPQLREKEHELSKAKLESAAAEKELSNKYNLVYQISNELGRMSKAIIEYTAKGGREKLEECQASVKQFSGDVETVEKDISELNGLLNEKERELLDMKGFERKVQDNLEVRRLNQKLLELEVLITELESHDAERNKEKYEKEMTRLRNEYSQLNSKYSSIIGEIKQLDDQLKIINDELATEFLDVKENYRKAIIKLETRKVANEDLAKYSKAMDSAIMQYHSEKMKEINAIIDELWKKTYTGTDVDTIMIRSDHESSRGNRTYNYRVSMIKDDAELDMRGRCSAGQKVLACIIVRLALAECFGKKCGIITLDEPTTNLDERNCEALARSLGQIIESRRNQSNFQLIVITHDQNFIAHMNASAYVDKYFQVSRNATQGSKIDCLPISQILVR
SIO_010081: AWJ20_4078
subclass of: SO_0000673
so part of: AWJ20_4078
location: complement(1217345..1220932)
location: region:1217345-1220932:-1
so has part: feature:1217345-1220932:-1:exon

XP_018733752.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1217345-1220932:-1:exon

AWJ20_4079
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4079
so part of: sequence
location: complement(<1225634..>1228528)
location: region:1225634-1228528:-1
so has part: feature:1225634-1228528:-1:exon
subclass of: SO_0000010

30036171
type: Gene
SIO_000068: ncbigene

position:1225634:-1
position: 1225634
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1228528:-1
position: 1228528
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1225634-1228528:-1:exon

AWJ20_4079
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4079
product: hypothetical protein
transcript id: XM_018881132.1
SIO_010081: AWJ20_4079
subclass of: SO_0000673
so part of: AWJ20_4079
location: complement(<1225634..>1228528)
location: region:1225634-1228528:-1
so has part: feature:1225634-1228528:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1225634-1228528:-1:exon

AWJ20_4079
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4079
codon start: 1
product: hypothetical protein
translation: MNTGSASGSNNPHSNSHSGENSQNDHNIQSRENDSASQTNQTSQSSQNSQTSQSGPSGLTSLIGQSGQSGPSGQSSHGNSVGHAKHYNSGSYSGQNSIHNSRRTSAYSVSSSGSGYAYGQSHSHGHSYGYGSAYPHTHGNAYSNSNHGHSFGHAHGLAHGQNQGQSQGHGFGQGHGQGHGQGHGHGHPGHNHGHGHGYGFGYGNIHGQQSYNQGQSSDHPDNADIGGYSLADAMNAGSSAYSGPGSAYKQRSSSLVDDNGMLMELDPEAALIAADNAITASEALAVSGAASTLHSEAGSPLRSHRNSYLFGPNKSFLSSLAEENAAFAYTNAPNFTDFDARFGNSLPSCAIYETDNEDDELLSVEDGAAPLHHQGSVAGSIPGSFAGSYAGSYAGSRAGSVAGSVAGSVAGSIAESMAGSDYMMHHQFYTPEAPNLHNLAPEILSLILQEVMLQAPTGTGPSALARILPTCFSMYDVGIPVLYRRVSFPKPHTFDKFRRSIEKSGYGILVRALDFSTFTSVGLGRTGKMMMEIQMVTSSTILSALEMCPNLHEFSMAESIDMDLDSRIINHLIENTPLLDAIDFTGSTSKPGFIHALEHSIFSFDSHPIENLTKISFHACSTVSSETFGRIFPKLCNLTRIDLTHTQITPDALLSLPSSASLTHLSLAKCVKLTSHGLLKFLLLHPSTRKLEWLNLMFDVTKPSPLSPKDFDTIVHYLPRSASNKMRYLNLSGLPVKESHLKSLSQLTSLQSLSFGHADIPIDKLSKFLTLLPELKVVDLTGNPYLSLWAVQGSTALFNANPNIDIFEFSADMLLKLKGISIPGFDIEIGRARRGWIYRKVKAQEEPVSEVATNTTFPEASLAPISPTRSSGFSFANFAQERLRQRSVSPPLGINGPISNTHQSRYGQYKFHNPPVTPFLRIDQLPAWEYASRKINMSVINVAGTSMNDACELRGIYAYYGYHI
SIO_010081: AWJ20_4079
subclass of: SO_0000673
so part of: AWJ20_4079
location: complement(1225634..1228528)
location: region:1225634-1228528:-1
so has part: feature:1225634-1228528:-1:exon

XP_018733753.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1225634-1228528:-1:exon

AWJ20_4080
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CPD1
locus tag: AWJ20_4080
so part of: sequence
location: <1230699..>1231325
location: region:1230699-1231325:1
so has part: feature:1230699-1231325:1:exon
subclass of: SO_0000010

30036173
type: Gene
SIO_000068: ncbigene

position:1230699:1
position: 1230699
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1231325:1
position: 1231325
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1230699-1231325:1:exon

AWJ20_4080
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CPD1
locus tag: AWJ20_4080
product: Cpd1p
transcript id: XM_018881134.1
SIO_010081: AWJ20_4080
subclass of: SO_0000673
so part of: AWJ20_4080
location: <1230699..>1231325
location: region:1230699-1231325:1
so has part: feature:1230699-1231325:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1230699-1231325:1:exon

AWJ20_4080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CPD1
locus tag: AWJ20_4080
inference: similar to AA sequence:KEGG_Orthology:K15435
note: Cyclic nucleotide phosphodiesterase; hydrolyzes ADP-ribose 1'', 2''-cyclic phosphate to ADP-ribose 1''-phosphate; may have a role in tRNA splicing; no detectable phenotype is conferred by null mutation or by overexpression; protein abundance increases in response to DNA replication stress; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0030136 - clathrin-coated vesicle [Evidence IDA] [PMID 14562095]; GO_function: GO:0004113 - 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity [Evidence IEA]; GO_function: GO:0004113 - 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity [Evidence IDA,IMP] [PMID 10734185]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004112 - cyclic-nucleotide phosphodiesterase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0009187 - cyclic nucleotide metabolic process [Evidence IDA] [PMID 10734185]
codon start: 1
product: Cpd1p
translation: MPKKGSPLYDALKATIDSLKTLFDDGVIFLPHLTITSDIHCHNQAQVDSILDTALAASKAVPQIPVIVDGLVYGSLYFKKVFLSVVPAPELVSLARICREEFVTAPMIASSEKNYSALSQEERDSLSKQAAQIANDWARDEYKPHVSLAYSNMYPVDEALQGTIDMRLTDTFGEHYATRGIGWTGGRLALVRCEGNVEDWVVLGHRDI
SIO_010081: AWJ20_4080
subclass of: SO_0000673
so part of: AWJ20_4080
location: 1230699..1231325
location: region:1230699-1231325:1
so has part: feature:1230699-1231325:1:exon

XP_018733754.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1230699-1231325:1:exon

AWJ20_4081
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4081
so part of: sequence
location: <1231700..>1231785
location: region:1231700-1231785:1
so has part: feature:1231700-1231785:1:exon
subclass of: SO_0000663

30036174
type: Gene
SIO_000068: ncbigene

position:1231700:1
position: 1231700
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:1231785:1
position: 1231785
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1231700-1231785:1:exon

AWJ20_4081
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 796027
locus tag: AWJ20_4081
product: tRNA-Tyr
SIO_010081: AWJ20_4081
subclass of: SO_0000673
so part of: AWJ20_4081
location: <1231700..>1231785
location: region:1231700-1231785:1
so has part: feature:1231700-1231785:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1231700-1231785:1:exon

AWJ20_4082
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4082
so part of: sequence
location: <1232891..>1234750
location: region:1232891-1234750:1
so has part: feature:1232891-1234750:1:exon
subclass of: SO_0000010

30036175
type: Gene
SIO_000068: ncbigene

position:1232891:1
position: 1232891
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1234750:1
position: 1234750
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1232891-1234750:1:exon

AWJ20_4082
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4082
product: hypothetical protein
transcript id: XM_018881135.1
SIO_010081: AWJ20_4082
subclass of: SO_0000673
so part of: AWJ20_4082
location: <1232891..>1234750
location: region:1232891-1234750:1
so has part: feature:1232891-1234750:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1232891-1234750:1:exon

AWJ20_4082
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4082
codon start: 1
product: hypothetical protein
translation: MTRPNPDLKPLERASVVSLADGPDNVSSTDPNLISARSTPPASPLLGPSSGTPTTPTRWKRKSSRQNIAKEEEEDDLNEEPSYWTLPRRDQIFFLIICRFTEPLAYASISPYIYYMIRDFGYTDPSKISALVTLVTTSFSLGQALTAVWWGRFADRYGRKPALLLGLIGTAISVMVFGTSTSIFWAMLGRCMSGLLNGNIGVMRTMVAEFVGNKKQYQTRAFAILPITMNVGTVVGPMIGGLLADPANNYPWLFGDSEFLKKYPYILPNLFPIPFIIAGLICTFLFIEETLDSPGALLPKSQDYGLKLGLRLKAWTRRSSVQTESHGYEVVPNETLESEDEVSLSDLEEDEEFDESIAESSSSPESTSNQSINKNRPENTTEGEAPKEEPVDRSLKAILTRPVKVTLVAYIILMLHAPSFMQLLPLFLSTPRMDDGDHHTNPFIFNGGLGLKTSEIGVVISILGGVGVAIQLLIYPRLANYLGNAKLHKTALLLFPPCYFLIPYLSFVPASPEYLSMLCTVPLAALVILGRTFAVPPMTVLITNASPSRKVLGTVHGVTHSVTSIARCVGPFVLGNLYSLGVKVNMISLAWWTMAAIVVVENFVAANLEEWGQDEPLGA
SIO_010081: AWJ20_4082
subclass of: SO_0000673
so part of: AWJ20_4082
location: 1232891..1234750
location: region:1232891-1234750:1
so has part: feature:1232891-1234750:1:exon

XP_018733755.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1232891-1234750:1:exon

AWJ20_4083
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PCD1
locus tag: AWJ20_4083
so part of: sequence
location: complement(<1234947..>1235870)
location: region:1234947-1235870:-1
so has part: feature:1234947-1235870:-1:exon
subclass of: SO_0000010

30036176
type: Gene
SIO_000068: ncbigene

position:1234947:-1
position: 1234947
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1235870:-1
position: 1235870
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1234947-1235870:-1:exon

AWJ20_4083
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PCD1
locus tag: AWJ20_4083
product: Pcd1p
transcript id: XM_018881136.1
SIO_010081: AWJ20_4083
subclass of: SO_0000673
so part of: AWJ20_4083
location: complement(<1234947..>1235870)
location: region:1234947-1235870:-1
so has part: feature:1234947-1235870:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1234947-1235870:-1:exon

AWJ20_4083
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PCD1
locus tag: AWJ20_4083
note: 8-oxo-dGTP diphosphatase; prevents spontaneous mutagenesis via sanitization of oxidized purine nucleoside triphosphates; can also act as peroxisomal pyrophosphatase with specificity for coenzyme A and CoA derivatives, may function to remove potentially toxic oxidized CoA disulfide from peroxisomes to maintain the capacity for beta-oxidation of fatty acids; nudix hydrolase family member; similar E. coli MutT and human, rat and mouse MTH1; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 10922370]; GO_function: GO:0008413 - 8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity [Evidence IDA,IMP] [PMID 15475388]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0030145 - manganese ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016462 - pyrophosphatase activity [Evidence IDA] [PMID 10922370]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 15475388]; GO_process: GO:0009132 - nucleoside diphosphate metabolic process [Evidence IEA]
codon start: 1
product: Pcd1p
translation: MKQTAIDALKRLRSFKIKSSVWDDLPYTRRAAVLVTLFRNSGGDLGSILTIRASSLSTFSGQAALPGGKADDINETTYQVARRETHEEIGLTSDDDALRSQGYAMDYLTTLPAYMSRNLLAVQPSIAYLRPINAPSIDDICSEHYNNRIFPHDFYSSFNHKTDLPGIIDSHAFSDSTEVQEVFSVPVNKFLYDNPKYYTGKPVDWGGLTWNQHWFKVIRRHKAIGEVGWLSVWGLTANILVDTAIIGYDQQPAMPHRQKGQFGDEEILRALHELGKLPEERNKKADLNIQFKEVFGKDSPLLSLRSM
SIO_010081: AWJ20_4083
subclass of: SO_0000673
so part of: AWJ20_4083
location: complement(1234947..1235870)
location: region:1234947-1235870:-1
so has part: feature:1234947-1235870:-1:exon

XP_018733756.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1234947-1235870:-1:exon

AWJ20_4084
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4084
so part of: sequence
location: <1237151..>1238761
location: region:1237151-1238761:1
so has part: feature:1237151-1238761:1:exon
subclass of: SO_0000010

30036177
type: Gene
SIO_000068: ncbigene

position:1237151:1
position: 1237151
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1238761:1
position: 1238761
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1237151-1238761:1:exon

AWJ20_4084
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4084
product: hypothetical protein
transcript id: XM_018881137.1
SIO_010081: AWJ20_4084
subclass of: SO_0000673
so part of: AWJ20_4084
location: <1237151..>1238761
location: region:1237151-1238761:1
so has part: feature:1237151-1238761:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1237151-1238761:1:exon

AWJ20_4084
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4084
codon start: 1
product: hypothetical protein
translation: MTRYRALSLVKGVSRSTHAQLTSPKFGYKRYSTNVSTGTPTPTKDSLHEALQNLKTVFPNRNELYSRIDLVTSSSPVPKIGVIPFKSARDDIKSLTESLLADPLASNQDWFQAFRNRLLSKDVLIKWAPAFEYVGNNNSLIEYPVPFRTADDSTRQNTQILEVNSVSDSMEHLKDCHLHIFVTTSVKDVLAMSPLPKTDYPSILVVDDARAVRLDQDQEPAGAAISQTKFPSTVWVSSKIALEAVDKLIESPSNSSIYLTKWKESRIATVEDIVFSSLPVLNGHLVDSVIATCQSIVEPSLKSHAEQQAEKGISETVQMREQWAQQAHRELQGTLSQSLETMQSSILAWWKLYYKVDDIYDTALTVIYRQFLPISKERLEYCLGRIDQQAIEIYGTAPSTSPPTEIFDAQNALAATEAVTLHDTGLKLLTTTIFGIQLPLTIIPLLGVYFYDYSMYAMASIIGLGVVVGFRYLQKGWLKATDQFNLAVKEKARLVLASSERLIWSSYESKVLEQQKLASHRQQLIENVRRAKGNYN
SIO_010081: AWJ20_4084
subclass of: SO_0000673
so part of: AWJ20_4084
location: 1237151..1238761
location: region:1237151-1238761:1
so has part: feature:1237151-1238761:1:exon

XP_018733757.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1237151-1238761:1:exon

AWJ20_4085
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: APM1
locus tag: AWJ20_4085
so part of: sequence
location: complement(<1238952..>1240472)
location: region:1238952-1240472:-1
so has part: feature:1238952-1240472:-1:exon
subclass of: SO_0000010

30036178
type: Gene
SIO_000068: ncbigene

position:1238952:-1
position: 1238952
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1240472:-1
position: 1240472
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1238952-1240472:-1:exon

AWJ20_4085
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: APM1
locus tag: AWJ20_4085
product: Apm1p
transcript id: XM_018881138.1
SIO_010081: AWJ20_4085
subclass of: SO_0000673
so part of: AWJ20_4085
location: complement(<1238952..>1240472)
location: region:1238952-1240472:-1
so has part: feature:1238952-1240472:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1238952-1240472:-1:exon

AWJ20_4085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: APM1
locus tag: AWJ20_4085
inference: similar to AA sequence:KEGG_Orthology:K12393
note: Mu1-like medium subunit of the AP-1 complex; binds clathrin; involved in clathrin-dependent Golgi protein sorting; the AP-1 complex is the clathrin-associated protein complex; GO_component: GO:0030121 - AP-1 adaptor complex [Evidence IPI,ISS] [PMID 10564262]; GO_component: GO:0030131 - clathrin adaptor complex [Evidence IEA]; GO_component: GO:0030665 - clathrin-coated vesicle membrane [Evidence IEA]; GO_component: GO:0005905 - coated pit [Evidence IEA,IEA]; GO_component: GO:0016023 - cytoplasmic membrane-bounded vesicle [Evidence IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0030276 - clathrin binding [Evidence IPI,ISS] [PMID 10564262]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IMP] [PMID 17003107]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IPI,ISS] [PMID 10564262]
codon start: 1
product: Apm1p
translation: MVASAIFFLDSKGQPLLWRNYRGDIPMSTVDNFPGLLIQAEDPAYWGNGQSSSLMSGGLAGGASSSLSGANTGLGGSAGPSSSLRIQGPCITYEGINYMYISVNNIYLLALSKKNSDAGVILLFLHNIVSVLKEYFKEVEEESIRDNFVIIYELLDEMMDFGHPQLTDAKILQEYITQESHELQNPSAPDIVTNAVSWRPENIYYKKNELFLDVNESLNVLLNSDGSIIRSEIVGKINVNAYLSGMPILKLGLNDAVRKDSQARRDSIAASADLGAEASSGTVAPNLAASKRARGKYVSMEDVQFHQCVELEQFEKDRTISFVPPDGKFELMSYRVKEFKAKPLFLAETKIDIRSRSRVLVSVKLKSQYRKRSAAENVEVIIPVPPDADSPRFKTSFGTVVYAPELNGIVWKLKNFAGGREVSMNAELQLSSVLDSEATGTSGGVTSFKTNQPVQIKFDIPYLAVSGLQVRYLKVTEPNLKYPSLPWVRYLTQSGDEYSIRLPSRK
SIO_010081: AWJ20_4085
subclass of: SO_0000673
so part of: AWJ20_4085
location: complement(1238952..1240472)
location: region:1238952-1240472:-1
so has part: feature:1238952-1240472:-1:exon

XP_018733758.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1238952-1240472:-1:exon

AWJ20_4086
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_4086
so part of: sequence
location: complement(<1243377..>1245305)
location: region:1243377-1245305:-1
so has part: feature:1243377-1245305:-1:exon
subclass of: SO_0000010

30036179
type: Gene
SIO_000068: ncbigene

position:1243377:-1
position: 1243377
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1245305:-1
position: 1245305
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1243377-1245305:-1:exon

AWJ20_4086
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_4086
product: 1-phosphatidylinositol-4-phosphate 5-kinase
transcript id: XM_018881139.1
SIO_010081: AWJ20_4086
subclass of: SO_0000673
so part of: AWJ20_4086
location: complement(join(<1243377..1245199,1245281..>1245305))
location: region:1243377-1245305:-1
so has part: feature:1245281-1245305:-1:exon
so has part: feature:1243377-1245199:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1245281-1245305:-1:exon

position:1245281:-1
position: 1245281
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1243377-1245199:-1:exon

position:1245199:-1
position: 1245199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

AWJ20_4086
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MSS4
locus tag: AWJ20_4086
inference: similar to AA sequence:KEGG_Orthology:K00889
note: Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]
codon start: 1
product: 1-phosphatidylinositol-4-phosphate 5-kinase
translation: MGTSIFTNGDTPFAQGPDRKVIRRPVLSDINRGISVPKYGACAQQENRRPARRSAFAYHKVLILACSSDDSGVSVGSDETLNEPTIWKPIDIVSEKPYCEQSSDTYSAPVDNDDDNCSEWSFEAGDETAFTTRQIESTWSEEDTEATWTAPAASWALSDCPIEVDESDASIESHGDVTLVESPLETTVSDLAESEEITPAKVDEQTLGTTSDAPAPIIEGSCSIDSLVTEIIAVANLFKDLPQLIVSGGLQADPESELPKTAPLALSKSISHTSSDDLVIQVEKVDKSKTPLLLTRAKAKLTSLTGHAAPITKSTLMFNGVQAATYDTSLSSQETLTMENKKYRLDGGAIIKAHSPMVYQNIRTLCGIDYHQFLNSFVLQSDLTKTKSPGKSGSDFLFTPDGKYIIKTIKRKEHNVIANAEFLADYYNHIKAHPNTQLPFYLGNYTLVADGKKTHFIIMKNLLQKETQLIYDLKGSSHDRRAGPRKDNRGRVVFKDLDWTDKRETISMSREDREMLLVQVSEDVNFLKRHNIMDYSLLVGLQSDTRTCEQQPVIGMIDTLCPFSWRKRAETTVKGLIFGRSAIDVVHPSKYGARFLNFVQSAVVPGPGRSVSTRC
SIO_010081: AWJ20_4086
subclass of: SO_0000673
so part of: AWJ20_4086
location: complement(join(1243377..1245199,1245281..1245305))
location: region:1243377-1245305:-1
so has part: feature:1245281-1245305:-1:exon
so has part: feature:1243377-1245199:-1:exon

XP_018733759.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1245281-1245305:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1243377-1245199:-1:exon

AWJ20_4087
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: LEU1
locus tag: AWJ20_4087
so part of: sequence
location: <1247586..>1249883
location: region:1247586-1249883:1
so has part: feature:1247586-1249883:1:exon
subclass of: SO_0000010

30036180
type: Gene
SIO_000068: ncbigene

position:1247586:1
position: 1247586
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1249883:1
position: 1249883
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1247586-1249883:1:exon

AWJ20_4087
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: LEU1
locus tag: AWJ20_4087
product: 3-isopropylmalate dehydratase LEU1
transcript id: XM_018881140.1
SIO_010081: AWJ20_4087
subclass of: SO_0000673
so part of: AWJ20_4087
location: <1247586..>1249883
location: region:1247586-1249883:1
so has part: feature:1247586-1249883:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1247586-1249883:1:exon

AWJ20_4087
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: LEU1
locus tag: AWJ20_4087
inference: similar to AA sequence:KEGG_Orthology:K01702
note: Isopropylmalate isomerase; catalyzes the second step in the leucine biosynthesis pathway; GO_component: GO:0009316 - 3-isopropylmalate dehydratase complex [Evidence IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 4355481]; GO_function: GO:0003861 - 3-isopropylmalate dehydratase activity [Evidence IEA,IEA]; GO_function: GO:0003861 - 3-isopropylmalate dehydratase activity [Evidence IMP] [PMID 5724969]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009098 - leucine biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0009098 - leucine biosynthetic process [Evidence IMP] [PMID 5724969]; GO_process: GO:0009098 - leucine biosynthetic process [Evidence IMP] [PMID 6323436]; GO_process: GO:0008152 - metabolic process [Evidence IEA]
codon start: 1
product: 3-isopropylmalate dehydratase LEU1
translation: MPSLSQNPQTLYDKVFQDHVVSKEGEDTYLIYIDRHLVHEVTSPQAFEGLKNAGRKVRRTDCTLATVDHNIPTSSRKTYKSIDTFIKEDDSRLQCSTLEQNVKDFGVRYFGLEDSRQGIVHVVGPEQGFTLPGTTVVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLLQTKSKNMLINVVGKLNPGITSKDLVLHIIGKIGTAGGTGAVIEFAGEAIRDLSMEARMSMCNMAIEAGARAGMIAPDETTYKYIKGRPLAPSGAEWEKALAYWKTLHTDEGAKFDIEVEIKGSEIIPTVTWGTSPQDALPISGSVPDPTKETDPIRRSGMERALEYMGLTANTPLQDIKIDKVFIGSCTNSRIEDLRLAASVVKGRKKAENVIRAMVVPGSGLVKKQAEREGLDKIFEAAGFEWREAGCSMCLGMNPDILSPKERCASTSNRNFEGRQGAQGRTHLMSPSMAAAAGIDGHLTDVRKYLSTGAESPTIGVESPTKKARVEEQQAPDELEVTEDAPAQSAAHGDLEDTPIATPKAATGIPVFQVEEGVAAPIAKANVDTDAIIPKQFLKTIKRTGLSVGLFYELRFKPQADGTLEKTDFALNVAPWDKAKILVVSGPNFGCGSSREHAPWALGDFGIRAVIAPSFGDIFYNNSLKNGLLPIRIPAEVIIEKLLPISEKGGSLKIDLPNQTISNGEGEILVEHFDIDPFRKDCLVKGLDDIGITLQKEEKIQKYELIRKDKFSFLEAGGAQVVKPVRAGGSKLSNDW
SIO_010081: AWJ20_4087
subclass of: SO_0000673
so part of: AWJ20_4087
location: 1247586..1249883
location: region:1247586-1249883:1
so has part: feature:1247586-1249883:1:exon

XP_018733760.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1247586-1249883:1:exon

AWJ20_4088
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4088
so part of: sequence
location: complement(<1250086..>1252281)
location: region:1250086-1252281:-1
so has part: feature:1250086-1252281:-1:exon
subclass of: SO_0000010

30036181
type: Gene
SIO_000068: ncbigene

position:1250086:-1
position: 1250086
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1252281:-1
position: 1252281
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1250086-1252281:-1:exon

AWJ20_4088
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4088
product: Csc1p
transcript id: XM_018881141.1
SIO_010081: AWJ20_4088
subclass of: SO_0000673
so part of: AWJ20_4088
location: complement(<1250086..>1252281)
location: region:1250086-1252281:-1
so has part: feature:1250086-1252281:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1250086-1252281:-1:exon

AWJ20_4088
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4088
codon start: 1
product: Csc1p
translation: MTTFAGTADNAPKVEQVEIGHNVRHLGELHEKYNKCLHALEKHLAKYFKHPDKLPSKRPMTRPMKEDREKLKDKVDAINYYLIKLRIYRDQISRTSAEYDTANRSHTEKLPYGFVSYRNQPEAHITAKKANKKSGRVGGALVKLAPRPEDIIWKNILLGKYERANKQWWGNLLFTVLMVAWIVPNAFIGCFLSDLSRIGVLWDNYQIFLDGHPTLFAILQGVLSPIVTSIIFLILPMIMRRMSQWQGKLTKNERERDVANKLYAFFFFNNFFVFTMMSVIWNVVSQVIQYVGSDNHNMSFIQVFNKLQIGEQIATAIINASSFWVMYILKANLGAVLDLLQVFTLFWNSFQKRFLSPTPRELMLLTAPQSFNFSVYYIWVLFYSTIALAFTSIQPIIFPMLTFYLWFDIILKKYSLMYMFVTKAESDGMFWPFIVNRLLFALGVGNIILLAVVWIQGGLALGMAVVPLPFIVIAFKIYLHKKLNPLFFYFIPTENEREAMNHYNGASDSGTIIGSELNTRYRNPIVYRRLPQPMVRAEIRPRLKSVCDVNDDIFNGDDGVPVLGRDSVSAVSQEFEYIGENELDYEQYIQRTEEPLDALDDEDIPTATTGQPYSSNEQKLHPEPVAVELQPYGSTSHAATNVDAGLMPYAPYGESEEPLYPQPYNPYNQSQEYLNPYTSHNANNSHVNLTTYPSYTSGEQVNTSGGVLQDDHDDRYGGEDDNVRLLRNPYQ
SIO_010081: AWJ20_4088
subclass of: SO_0000673
so part of: AWJ20_4088
location: complement(1250086..1252281)
location: region:1250086-1252281:-1
so has part: feature:1250086-1252281:-1:exon

XP_018733761.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1250086-1252281:-1:exon

AWJ20_4089
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CPR6
locus tag: AWJ20_4089
so part of: sequence
location: complement(<1254758..>1255651)
location: region:1254758-1255651:-1
so has part: feature:1254758-1255651:-1:exon
subclass of: SO_0000010

30036182
type: Gene
SIO_000068: ncbigene

position:1254758:-1
position: 1254758
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1255651:-1
position: 1255651
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1254758-1255651:-1:exon

AWJ20_4089
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CPR6
locus tag: AWJ20_4089
product: peptidylprolyl isomerase CPR6
transcript id: XM_018881142.1
SIO_010081: AWJ20_4089
subclass of: SO_0000673
so part of: AWJ20_4089
location: complement(<1254758..>1255651)
location: region:1254758-1255651:-1
so has part: feature:1254758-1255651:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1254758-1255651:-1:exon

AWJ20_4089
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CPR6
locus tag: AWJ20_4089
inference: similar to AA sequence:KEGG_Orthology:K05864
note: Peptidyl-prolyl cis-trans isomerase (cyclophilin); catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; plays a role in determining prion variants; binds to Hsp82p and contributes to chaperone activity; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9191025]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IDA] [PMID 10942767]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IDA] [PMID 9191025]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 10942767]; GO_process: GO:0006457 - protein folding [Evidence IEA,IEA]; GO_process: GO:0006457 - protein folding [Evidence IDA,IPI] [PMID 9927435]; GO_process: GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA,IEA,IEA]; GO_process: GO:0042026 - protein refolding [Evidence IDA] [PMID 10942767]
codon start: 1
product: peptidylprolyl isomerase CPR6
translation: MIQGGDFTNGNGTGGVSIYGEKFEDEAFPVKHTEPFLLSMANAGPNTNGSQFFVTTVPTPHLDGKHVVFGKLLAGKSVIRKVENTKKDSGDRPVQDVVITDCGELSPEDELPTFNDGTGDDYEDSLKDEGRVDENVPETVFTAVKNIKEIGTKLFKSGDIKGAYNKYSKAANYLKDYFPDDLSEEDLKTLSDIKISVYLNVALTALKENLPREAIEASSEVLSLEDKVGDKEKAKALYRRGNGELLLKNEEGAVKDLNEALKYAPDDAAITALIAKAKKAAQDRRNKEKAALSKFFS
SIO_010081: AWJ20_4089
subclass of: SO_0000673
so part of: AWJ20_4089
location: complement(1254758..1255651)
location: region:1254758-1255651:-1
so has part: feature:1254758-1255651:-1:exon

XP_018733762.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1254758-1255651:-1:exon

AWJ20_4090
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: MIF2
locus tag: AWJ20_4090
so part of: sequence
location: complement(<1256697..>1257446)
location: region:1256697-1257446:-1
so has part: feature:1256697-1257446:-1:exon
subclass of: SO_0000010

30036184
type: Gene
SIO_000068: ncbigene

position:1256697:-1
position: 1256697
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1257446:-1
position: 1257446
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1256697-1257446:-1:exon

AWJ20_4090
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: MIF2
locus tag: AWJ20_4090
product: Muscle M-line assembly protein unc-89
transcript id: XM_018881144.1
SIO_010081: AWJ20_4090
subclass of: SO_0000673
so part of: AWJ20_4090
location: complement(<1256697..>1257446)
location: region:1256697-1257446:-1
so has part: feature:1256697-1257446:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1256697-1257446:-1:exon

AWJ20_4090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: MIF2
locus tag: AWJ20_4090
codon start: 1
product: Muscle M-line assembly protein unc-89
translation: MMDVFNDDEVESYDYGSRNEVSSDEEAVETSDDEGVDSVEQEYLNSKISSEREKSEYKLGQAWMAIISKYGNEDIEKDADVIDLYTGEIVEDHGHLRSLDDKTGSLWLDVDDENDGESARRKRKSGSQTGLDSSPSKKSKNNSPVKPVADLTNWLLNSDDGHDKEDTILPQNNSTSVISPIRQKIDIPSSPIKHNNSSSAVLQYLDESDSDSDTSPLPSSEPTTSLTLKPSCKPGGSLKCNRPFCFKCS
SIO_010081: AWJ20_4090
subclass of: SO_0000673
so part of: AWJ20_4090
location: complement(1256697..1257446)
location: region:1256697-1257446:-1
so has part: feature:1256697-1257446:-1:exon

XP_018733763.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1256697-1257446:-1:exon

AWJ20_4091
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CRD1
locus tag: AWJ20_4091
so part of: sequence
location: <1258029..>1259045
location: region:1258029-1259045:1
so has part: feature:1258029-1259045:1:exon
subclass of: SO_0000010

30036185
type: Gene
SIO_000068: ncbigene

position:1258029:1
position: 1258029
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1259045:1
position: 1259045
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1258029-1259045:1:exon

AWJ20_4091
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CRD1
locus tag: AWJ20_4091
product: cardiolipin synthase
transcript id: XM_018881145.1
SIO_010081: AWJ20_4091
subclass of: SO_0000673
so part of: AWJ20_4091
location: <1258029..>1259045
location: region:1258029-1259045:1
so has part: feature:1258029-1259045:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1258029-1259045:1:exon

AWJ20_4091
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CRD1
locus tag: AWJ20_4091
inference: similar to AA sequence:KEGG_Orthology:K08744
note: Cardiolipin synthase; produces cardiolipin, which is a phospholipid of the mitochondrial inner membrane that is required for normal mitochondrial membrane potential and function; required to maintain tubular mitochondrial morphology and functions in mitochondrial fusion; also required for normal vacuolar ion homeostasis; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0008808 - cardiolipin synthase activity [Evidence IDA] [PMID 7564918]; GO_function: GO:0008808 - cardiolipin synthase activity [Evidence IMP] [PMID 9614098]; GO_function: GO:0016780 - phosphotransferase activity, for other substituted phosphate groups [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006873 - cellular ion homeostasis [Evidence IMP] [PMID 18799619]; GO_process: GO:0008610 - lipid biosynthetic process [Evidence IDA] [PMID 7564918]; GO_process: GO:0008610 - lipid biosynthetic process [Evidence IMP] [PMID 9614098]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0007006 - mitochondrial membrane organization [Evidence IMP] [PMID 10777514]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA,IEA]
codon start: 1
product: cardiolipin synthase
translation: MSLIRDAGLLWKLQRLSPSYNVLGKSSTTIKSLGLHARGLASVRAPASSTSVLARRELSVKDFRNHLTYNQLVRRLSNSRLVSEEQREKTKPIATPAPASAANTTTSKNASSTTSTSTETAEIPVTKPKKPLKEDIWTIPNILTLSRLAAAPVIGYLIVDGQPFWALSLVVYSGITDLLDGYIARRFKMQSVVGSVIDPLADKALMMTLATCLGVSGDIPMAMAVIILGRDILLGLSAFYYRYISLPPPITFKRYWDFSIPSAEVHPTTISKYNTFFQMVYLGSSLIYPVIAPSLQTAAADNLGLGLTAMGYLVATTTIWSGLSYVFSKSAVKIIKQR
SIO_010081: AWJ20_4091
subclass of: SO_0000673
so part of: AWJ20_4091
location: 1258029..1259045
location: region:1258029-1259045:1
so has part: feature:1258029-1259045:1:exon

XP_018733764.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1258029-1259045:1:exon

AWJ20_4092
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CCT4
locus tag: AWJ20_4092
so part of: sequence
location: complement(<1259270..>1260904)
location: region:1259270-1260904:-1
so has part: feature:1259270-1260904:-1:exon
subclass of: SO_0000010

30036186
type: Gene
SIO_000068: ncbigene

position:1259270:-1
position: 1259270
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1260904:-1
position: 1260904
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1259270-1260904:-1:exon

AWJ20_4092
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CCT4
locus tag: AWJ20_4092
product: Cct4p
transcript id: XM_018881146.1
SIO_010081: AWJ20_4092
subclass of: SO_0000673
so part of: AWJ20_4092
location: complement(<1259270..>1260904)
location: region:1259270-1260904:-1
so has part: feature:1259270-1260904:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1259270-1260904:-1:exon

AWJ20_4092
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CCT4
locus tag: AWJ20_4092
inference: similar to AA sequence:KEGG_Orthology:K09496
note: Subunit of the cytosolic chaperonin Cct ring complex; related to Tcp1p, required for the assembly of actin and tubulins in vivo; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IPI] [PMID 15704212]; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IDA] [PMID 16762366]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 16762366]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IDA] [PMID 16762366]
codon start: 1
product: Cct4p
translation: MNSVAKPSGNVFKDKEKPQEVRRSNILAARAVADAIRTSLGPKGMDKMLQTGKGEVIITNDGHTILQHMAVMHPAAKMLVDLSAAQDVEAGDGTTSVVVIAGALLGAAERLLNKGIHPSIIAESFQRAAARAVEVLLEMSHKISLSDREKLITAASTSLNSKIVSQYSSLLAPMAVDAVLKVIDPATATNVDLKDIRLIKKVGGTIDDTELVPGLVLTQNAVKNSGGPSRMEKARIGMIQFQLSPPKPDMENHVVVNDYRQMDKILKEERTYLLNMCKQIKKAKCNVLFIQKSILRDAVNDLSLHFLSKLNIMVVKDIERDEVEFICKSTGCSPIADIDSFTEDRLGYADLVEEVESSGSRVIKVSGTAASSGSDSSSGSGSGSASGSTSTVSIICRGANQLILDESERSLHDALCVIRCLVKEKALIAGGGAPEVEIARVLTKEARTLSGTESFCWKEFAEALDVIPTTLAENAGINSIEVVTDLRNRHEQGQLNAGVSIRRGTANIYDEHVLQPVLVNKSAITLAAECVKSILRIDDIAFSR
SIO_010081: AWJ20_4092
subclass of: SO_0000673
so part of: AWJ20_4092
location: complement(1259270..1260904)
location: region:1259270-1260904:-1
so has part: feature:1259270-1260904:-1:exon

XP_018733765.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1259270-1260904:-1:exon

AWJ20_4093
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4093
so part of: sequence
location: <1259382..>1260035
location: region:1259382-1260035:1
so has part: feature:1259382-1260035:1:exon
subclass of: SO_0000010

30036187
type: Gene
SIO_000068: ncbigene

position:1259382:1
position: 1259382
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1260035:1
position: 1260035
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1259382-1260035:1:exon

AWJ20_4093
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4093
product: hypothetical protein
transcript id: XM_018881147.1
SIO_010081: AWJ20_4093
subclass of: SO_0000673
so part of: AWJ20_4093
location: <1259382..>1260035
location: region:1259382-1260035:1
so has part: feature:1259382-1260035:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1259382-1260035:1:exon

AWJ20_4093
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4093
codon start: 1
product: hypothetical protein
translation: MLAVPRRMLTPALSCPCSCLLRRSVTTSMLLIPAFSARVVGITSSASANSFQQNDSVPESVRASLVRTRAISTSGAPPPAIRAFSFTKQRITQRASCKERSDSSRINWLAPLQMMETVDVEPEAEPLPLPELLSDPLLAAVPLTLITRDPEDSTSSTRSAYPNLSSVNESMSAIGLQPVLLQMNSTSSLSISLTTMIFSLERKCRERSLTASRRIDF
SIO_010081: AWJ20_4093
subclass of: SO_0000673
so part of: AWJ20_4093
location: 1259382..1260035
location: region:1259382-1260035:1
so has part: feature:1259382-1260035:1:exon

XP_018733766.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1259382-1260035:1:exon

AWJ20_4094
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: CDC123
locus tag: AWJ20_4094
so part of: sequence
location: <1261573..>1262772
location: region:1261573-1262772:1
so has part: feature:1261573-1262772:1:exon
subclass of: SO_0000010

30036188
type: Gene
SIO_000068: ncbigene

position:1261573:1
position: 1261573
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1262772:1
position: 1262772
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1261573-1262772:1:exon

AWJ20_4094
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: CDC123
locus tag: AWJ20_4094
product: Cdc123p
transcript id: XM_018881148.1
SIO_010081: AWJ20_4094
subclass of: SO_0000673
so part of: AWJ20_4094
location: <1261573..>1262772
location: region:1261573-1262772:1
so has part: feature:1261573-1262772:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1261573-1262772:1:exon

AWJ20_4094
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: CDC123
locus tag: AWJ20_4094
note: Protein involved in nutritional control of the cell cycle; regulates abundance of the translation initiation factor eIF2; ortholog of human D123 protein; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007346 - regulation of mitotic cell cycle [Evidence IMP] [PMID 15319434]; GO_process: GO:0006417 - regulation of translation [Evidence IGI] [PMID 15319434]
codon start: 1
product: Cdc123p
translation: MPSSTRTSVVDLTELDMGPRPSIKNVDNCAFSSWYPQYKKLCPKARLVKPLPKEFVEYLLADGIVLAKGDAGLVWEDTDGEVHGARIEEVDASVPLPENTSATTGNEAKEKEEVEEEEAEKEEEQENDGNEASEDEAEDPTIHFQELHNDIASLIKELGGSICPKLNWSAPKDALWISTTNNMKCINPSDIYMLLKASSYITHDLTEAYEGCVDFDESAPPKPEFELVLRKWFEINPALEFRCFVKDRNIVGITQRDMNYYEFLGPLKDKLEDEIHAFFEENLEFTFPDDSFVFDVYVPEPYDRVWLIDINPWASKTDTLLYSWEQLMGYDPLQTGFEPELRLVDKLDSSRGFGTVEHTESYVPKDFVDGGLNASSMSDMVDRLRQMMASQHDDSSDDE
SIO_010081: AWJ20_4094
subclass of: SO_0000673
so part of: AWJ20_4094
location: 1261573..1262772
location: region:1261573-1262772:1
so has part: feature:1261573-1262772:1:exon

XP_018733767.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1261573-1262772:1:exon

AWJ20_4095
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TIM17
locus tag: AWJ20_4095
so part of: sequence
location: <1263486..>1263962
location: region:1263486-1263962:1
so has part: feature:1263486-1263962:1:exon
subclass of: SO_0000010

30036189
type: Gene
SIO_000068: ncbigene

position:1263486:1
position: 1263486
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1263962:1
position: 1263962
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1263486-1263962:1:exon

AWJ20_4095
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TIM17
locus tag: AWJ20_4095
product: protein transporter TIM17
transcript id: XM_018881149.1
SIO_010081: AWJ20_4095
subclass of: SO_0000673
so part of: AWJ20_4095
location: <1263486..>1263962
location: region:1263486-1263962:1
so has part: feature:1263486-1263962:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1263486-1263962:1:exon

AWJ20_4095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TIM17
locus tag: AWJ20_4095
inference: similar to AA sequence:KEGG_Orthology:K17795
note: Essential component of the TIM23 complex; with Tim23p, contributes to the architecture and function of the import channel; may link the import motor to the core Translocase of the Inner Mitochondrial membrane (TIM23 complex); GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005744 - mitochondrial inner membrane presequence translocase complex [Evidence IEA]; GO_component: GO:0005744 - mitochondrial inner membrane presequence translocase complex [Evidence IDA] [PMID 15618217]; GO_component: GO:0005744 - mitochondrial inner membrane presequence translocase complex [Evidence IPI] [PMID 7600576]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015450 - P-P-bond-hydrolysis-driven protein transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015266 - protein channel activity [Evidence IMP] [PMID 11344168]; GO_function: GO:0015266 - protein channel activity [Evidence IMP] [PMID 15618217]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IGI] [PMID 18826960]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 11344168]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 15618217]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 7600576]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 7919535]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: protein transporter TIM17
translation: MAEAGDHSRDPCPIVILNDFGATFAMGVIGGTIWHGIKGFRNSPIGERRAGALSAIKVRAPTIGGNFGVWGGLFSTFDCAVKGVRRTEDPFNAIIAGFFTGGSLALRGGWKQTRNGAITCACVLAVFEGVGIAMQRWMAYGQKPMAPQLPEAPQPLAA
SIO_010081: AWJ20_4095
subclass of: SO_0000673
so part of: AWJ20_4095
location: 1263486..1263962
location: region:1263486-1263962:1
so has part: feature:1263486-1263962:1:exon

XP_018733768.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1263486-1263962:1:exon

AWJ20_4096
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4096
so part of: sequence
location: complement(<1263503..>1263886)
location: region:1263503-1263886:-1
so has part: feature:1263503-1263886:-1:exon
subclass of: SO_0000010

30036190
type: Gene
SIO_000068: ncbigene

position:1263503:-1
position: 1263503
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1263886:-1
position: 1263886
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1263503-1263886:-1:exon

AWJ20_4096
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4096
product: hypothetical protein
transcript id: XM_018881150.1
SIO_010081: AWJ20_4096
subclass of: SO_0000673
so part of: AWJ20_4096
location: complement(<1263503..>1263886)
location: region:1263503-1263886:-1
so has part: feature:1263503-1263886:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1263503-1263886:-1:exon

AWJ20_4096
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4096
codon start: 1
product: hypothetical protein
translation: MAIPTPSKTAKTQAQVMAPFLVCFQPPRRASDPPVKKPAMIALKGSSVLRTPLTAQSKVENKPPQTPKLPPIVGARTLIADKAPARRSPIGEFLNPLIPCQIVPPITPIAKVAPKSFKMTMGQGSLE
SIO_010081: AWJ20_4096
subclass of: SO_0000673
so part of: AWJ20_4096
location: complement(1263503..1263886)
location: region:1263503-1263886:-1
so has part: feature:1263503-1263886:-1:exon

XP_018733769.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1263503-1263886:-1:exon

AWJ20_4097
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4097
so part of: sequence
location: <1264627..>1266798
location: region:1264627-1266798:1
so has part: feature:1264627-1266798:1:exon
subclass of: SO_0000010

30036191
type: Gene
SIO_000068: ncbigene

position:1264627:1
position: 1264627
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1266798:1
position: 1266798
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1264627-1266798:1:exon

AWJ20_4097
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4097
product: hypothetical protein
transcript id: XM_018881151.1
SIO_010081: AWJ20_4097
subclass of: SO_0000673
so part of: AWJ20_4097
location: <1264627..>1266798
location: region:1264627-1266798:1
so has part: feature:1264627-1266798:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1264627-1266798:1:exon

AWJ20_4097
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4097
inference: similar to AA sequence:KEGG_Orthology:K13123
codon start: 1
product: hypothetical protein
translation: MSVQYGTALFDDSSGSHVAVESMPRWKRKDESERVKERFHGAFTGGFSAGYFNTVGSKEGWAPSSFRSSRKDKASGASSTISPKYSRPEDFMDEEDLRDQEDSITLVPVSDTIDSRSGKSLLELGLTSIASMQAAGSAELSLDSRIRSLVTGGAAGDDDARSLSAKSAWSSVPAVDAVGYGILSKMGWRPGQGIGPKSKKKFDLGDRSGSVEHEIAPKNTVLSVRPSNNSHGLGYDIDMPELPVLLASRTGDDSRDSSERSGLNPRTKKRKLAMNLSIAASYEDDDEDGLEEVRSNWNPKYDTKEVLKSDKPRFVRPMKKLSRNGQNISSEKEPRAQFVKRRCADGLPVPTGFVLSSRPLYKGNDYPLPDVLVAVLNDQLAEISNRVENMKNIERNGATILTSKNDGGENTTTLDSKSRAQLLKEPQLPGQSVFDLLSKDALKRIADIKDGRNVIPLDRKPDETLKVNSEVKLEIKTEISPDLKPEVKPSVVPGMESDEKLGSGISASKAEDDEVDNLPYLSQDIAHEALSNTKYPYAEDLEKRQRYLNVLKVYSDQTGTSGTFAASLKKIRPTSFSHETWINELNEFTRVAIVFRPLKGAIASRFTSSTGRPTNDTGIQTPAEYDASTFRVTDFFPERLLSKRFGVPFIGITTDSSEKRSMKPSRDTTQESKPKSEASASSSEVEATIDPNKNSALESDRAPSSLFAMIFGDKAEDSEDDDI
SIO_010081: AWJ20_4097
subclass of: SO_0000673
so part of: AWJ20_4097
location: 1264627..1266798
location: region:1264627-1266798:1
so has part: feature:1264627-1266798:1:exon

XP_018733770.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1264627-1266798:1:exon

AWJ20_4098
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4098
so part of: sequence
location: <1270742..>1271377
location: region:1270742-1271377:1
so has part: feature:1270742-1271377:1:exon
subclass of: SO_0000010

30036192
type: Gene
SIO_000068: ncbigene

position:1270742:1
position: 1270742
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1271377:1
position: 1271377
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1270742-1271377:1:exon

AWJ20_4098
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4098
product: hypothetical protein
transcript id: XM_018881152.1
SIO_010081: AWJ20_4098
subclass of: SO_0000673
so part of: AWJ20_4098
location: <1270742..>1271377
location: region:1270742-1271377:1
so has part: feature:1270742-1271377:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1270742-1271377:1:exon

AWJ20_4098
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4098
codon start: 1
product: hypothetical protein
translation: METLTTLHFFYLGGSIPSIIQRHAGSLTDYLKALLALFKEYESIKAQSDPTTSRTKSVVGVGRRLFRARVKSETSLSTVSSSTSLNEHHLRAGRNSSGSIPSSLAFIPSPTTSSIPEYSYLSVCHLPFVPDLAQTFLCLCETLIEAYKHIDTLVPNWQAVPQDVQELVSKLDDKVYKNVVAPSLKDIETPFRNVSYTESPSSKLSSLLSRA
SIO_010081: AWJ20_4098
subclass of: SO_0000673
so part of: AWJ20_4098
location: 1270742..1271377
location: region:1270742-1271377:1
so has part: feature:1270742-1271377:1:exon

XP_018733771.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1270742-1271377:1:exon

AWJ20_4099
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4099
so part of: sequence
location: complement(<1271985..>1272536)
location: region:1271985-1272536:-1
so has part: feature:1271985-1272536:-1:exon
subclass of: SO_0000010

30036193
type: Gene
SIO_000068: ncbigene

position:1271985:-1
position: 1271985
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1272536:-1
position: 1272536
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1271985-1272536:-1:exon

AWJ20_4099
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4099
product: hypothetical protein
transcript id: XM_018881153.1
SIO_010081: AWJ20_4099
subclass of: SO_0000673
so part of: AWJ20_4099
location: complement(<1271985..>1272536)
location: region:1271985-1272536:-1
so has part: feature:1271985-1272536:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1271985-1272536:-1:exon

AWJ20_4099
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4099
codon start: 1
product: hypothetical protein
translation: MSIDEGADILARVQRAGLLADFSTGPQQIPTDGTTPSPPWPPLFEDNGHDADSEDSDDEDDDDDSGHNQRVLDAQKEWDESMRQLGSLFTLIFFPIIGKFLGRRFSYYCKCDNIFYETGLASGGWGSAPDPVARFARCLDRGDGVFLWHRGHWHRVSMLGTDQTNIVVWRQYLDYRYAPSKPS
SIO_010081: AWJ20_4099
subclass of: SO_0000673
so part of: AWJ20_4099
location: complement(1271985..1272536)
location: region:1271985-1272536:-1
so has part: feature:1271985-1272536:-1:exon

XP_018733772.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1271985-1272536:-1:exon

AWJ20_4100
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: TRM1
locus tag: AWJ20_4100
so part of: sequence
location: <1272978..>1274702
location: region:1272978-1274702:1
so has part: feature:1272978-1274702:1:exon
subclass of: SO_0000010

30036196
type: Gene
SIO_000068: ncbigene

position:1272978:1
position: 1272978
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1274702:1
position: 1274702
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1272978-1274702:1:exon

AWJ20_4100
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: TRM1
locus tag: AWJ20_4100
product: Trm1p
transcript id: XM_018881156.1
SIO_010081: AWJ20_4100
subclass of: SO_0000673
so part of: AWJ20_4100
location: <1272978..>1274702
location: region:1272978-1274702:1
so has part: feature:1272978-1274702:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1272978-1274702:1:exon

AWJ20_4100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: TRM1
locus tag: AWJ20_4100
inference: similar to AA sequence:KEGG_Orthology:K00555
note: tRNA methyltransferase; two forms of the protein are made by alternative translation starts; localizes to both the nucleus and mitochondrion to produce the modified base N2,N2-dimethylguanosine in tRNAs in both compartments; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 7599275]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 7599275]; GO_component: GO:0005637 - nuclear inner membrane [Evidence IEA]; GO_component: GO:0005637 - nuclear inner membrane [Evidence IMP] [PMID 19602197]; GO_component: GO:0005637 - nuclear inner membrane [Evidence IDA] [PMID 7599275]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0004809 - tRNA (guanine-N2-)-methyltransferase activity [Evidence IEA]; GO_function: GO:0004809 - tRNA (guanine-N2-)-methyltransferase activity [Evidence IDA,IMP] [PMID 9801306]; GO_function: GO:0000049 - tRNA binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IMP] [PMID 2426253]; GO_process: GO:0008033 - tRNA processing [Evidence IEA,IEA]
codon start: 1
product: Trm1p
translation: MSSSSTPNSTAAAPAVSDSVNTTENKPFDTEKYDEVTEGKASILYPKGNTVFYNPVQQFNRDISIVGIRAWSEIYNEQVLIPRLERSKNAKNKANKKRKRENDEGTVVSEPSTETKVEPESTSETQAETDAATTQDTPMSEANSATAAESSKPYIEIIEALSASGLRAIRYGKEIPYIKKVIANDFSKEAVKSIHANVEHNQIGSRVYPNEGDANIVMYQHKTKNVHVVDLDPYGSATPFMDAAVQSVCDGGLLLVTCTDLAVLAGNSYPEKCFSQYGGNTLNNDSCHEAALRLVLNMVASTAAKYGRAIEPLLSLSIDFYVRCFIRVRSQPALVKFNASKTMIVYNCSGCGTTTCQPLGRATAREKNNHVTYKHSYAQGPTVSSNCEHCGFVHHVAGPMWGGPLHDEKFVSKMLEIHDTLDTNVYKTTQRIKGMLTVAKSELDDTPFFVSLPHLSSVVKAPCPPLTTFASALLNGGYRISGTHCQPASIKTDATASFIWDVMREWIKLEKKGDTKNLSPTSPGGNILKTLETKHSISFEVHPKASELEKQRKSKLVRYQVNPTENWGPKAKAK
SIO_010081: AWJ20_4100
subclass of: SO_0000673
so part of: AWJ20_4100
location: 1272978..1274702
location: region:1272978-1274702:1
so has part: feature:1272978-1274702:1:exon

XP_018733773.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1272978-1274702:1:exon

AWJ20_4101
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PUF4
locus tag: AWJ20_4101
so part of: sequence
location: complement(<1275145..>1278597)
location: region:1275145-1278597:-1
so has part: feature:1275145-1278597:-1:exon
subclass of: SO_0000010

30036197
type: Gene
SIO_000068: ncbigene

position:1275145:-1
position: 1275145
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1278597:-1
position: 1278597
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1275145-1278597:-1:exon

AWJ20_4101
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PUF4
locus tag: AWJ20_4101
product: Puf4p
transcript id: XM_018881157.1
SIO_010081: AWJ20_4101
subclass of: SO_0000673
so part of: AWJ20_4101
location: complement(<1275145..>1278597)
location: region:1275145-1278597:-1
so has part: feature:1275145-1278597:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1275145-1278597:-1:exon

AWJ20_4101
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PUF4
locus tag: AWJ20_4101
note: Member of the PUF protein family; PUF family is defined by the presence of Pumilio homology domains that confer RNA binding activity; preferentially binds mRNAs encoding nucleolar ribosomal RNA-processing factors; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence ISS] [PMID 11101532]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 15024427]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 18327269]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0001308 - negative regulation of chromatin silencing involved in replicative cell aging [Evidence IGI,IMP] [PMID 9150138]; GO_process: GO:0017148 - negative regulation of translation [Evidence IDA] [PMID 20427513]; GO_process: GO:0000288 - nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [Evidence IGI] [PMID 11101532]; GO_process: GO:0008104 - protein localization [Evidence IMP] [PMID 9150138]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]
codon start: 1
product: Puf4p
translation: MDAHSPDHSFDDSFYGTPYQYQYQYPQQQLQQLQHQQQQQLYQEQQQQYHHQQYYQQHQQLQHQDYAHYQQQPQQRQQPWQPQEMAFHQVQPQFQPHQIPSDQFQHHSNPPLVSSGQPGSGSGFAAAATAAGVAPPPSLLHPSLLSSSSYSSPSSSASSISQNNRSNMNNQSCTSTGSCTKSNTNSGSNSNSSSSASSISSTHHQFPSYGSTADFSSTSEPVTPPDSRFAISSFTPGSIGGGNGGSGKLAIAGLGGIMSNSTSGSGIPNAMYNIFPLAGGDNHCFGVGGPLLSPQENGSRTSHAQAQHGLNLANVNLMPVGNLASPPIDRDRMNNGTSGDVNGGTVGVVNNGSPVASGSVRGTGSMPMSVPPSKSMRNPLHPHVITPPSDSMSTIHTSSSSNTVTEGFISDLNRLSLTSNGNNARSSIGGSSFPSSPARYLFEGELHSYSPPPSTPPSVHTSQTSQNQSQNQSVLAGATPASSNDASAICLTTASAASHQRKPSFLQAETTDDKFPILVRRESNGFKTSPSAGHGSRQSVSGALVDFLDPSPILFDGNGVSTSGVGAGTPGTSSATSAGGVAPNWISGVHNSMANGLNGSGLGSAVTSSGSGSKSNSSLSVGGASASGPFIQHSQAQPQAAPRMVYYTPPMRSPAASQGSYFDRGLITENSNYRMMNQAVLNETIPVSSMTLPPLLSENAQPASGILPVTVETSLPMRNNPAVSIATTTKPNGHEALRIIQNPSAVNNSASSGTGHASAGTSVGGNGASNVGSNSGSRSGRQVKSSAAADHELNRYAHASLESMKDEIYSLCKDQHGCRFLQRKLEEKNPGYLNMIFKETYPHVVELMTDPFGNYLCQKLLEYATDEQRTVLMRTAAPDLVAIALNQHGTRALQKMIQYINSSEQVDMIVAALKSNVVKLTQDLNGNHVVQKCLYRLSHEGSQFIYDAVCENCVTVGTHKHGCCVLQRCIDHASPEQKKQLVKEIIKNAFTLVQDQFGNYVAQYVLDLGNKEFSEPMIHQFAGKICILSVQKFSSNVIEKCLRIAEPETASLLIEELVRSPKLDELLRDSYANYVIQTALDYAQPAVRQRLVDNIRPIIPSIRSTPYGRRIQSKLSSGQAASSGSVTPSAAQTSQEFTSPVGDFEWPYRS
SIO_010081: AWJ20_4101
subclass of: SO_0000673
so part of: AWJ20_4101
location: complement(1275145..1278597)
location: region:1275145-1278597:-1
so has part: feature:1275145-1278597:-1:exon

XP_018733774.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1275145-1278597:-1:exon

AWJ20_4102
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4102
so part of: sequence
location: complement(<1287534..>1289027)
location: region:1287534-1289027:-1
so has part: feature:1287534-1289027:-1:exon
subclass of: SO_0000010

30036198
type: Gene
SIO_000068: ncbigene

position:1287534:-1
position: 1287534
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1289027:-1
position: 1289027
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1287534-1289027:-1:exon

AWJ20_4102
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4102
product: hypothetical protein
transcript id: XM_018881158.1
SIO_010081: AWJ20_4102
subclass of: SO_0000673
so part of: AWJ20_4102
location: complement(<1287534..>1289027)
location: region:1287534-1289027:-1
so has part: feature:1287534-1289027:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1287534-1289027:-1:exon

AWJ20_4102
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4102
codon start: 1
product: hypothetical protein
translation: MSVVPELPGFYYDNDRKRYFRIINTGQATSQGSSDYSISAVAEVRRRRKKRNVDQNGTTSRSGHSSQYGPGNGLGVHTCCSNTSNRQGSLMSSLYPYPHGSGSSIKRYMLASSVNPRINRTAHSTMLISAMSQQAHWSLEMASTSDNLACISWSQKEQVLVLGTKEGQCSAVSGEEMVTDTTSLIVRPSNSNSTYLLGSFNSEVTSLSLSGDSMVTTSLGGPGMSGHLGCTIMKPNDASSYIQFKLPERKSAFCSAVREDPSGPYTRLAVGADTCAFCIHPYVSGAFKERFDTGSDVLAVEYVDESPSSANSYLLLAGCRSGSLNLLDPRLPSRHLTPTKPVTQAFHPSAVTHVKSLNDSRYLLVSGLEDTLALYDLRYVKPGAGPSNRTRSPYLKNLGAPSKPVLTYNGYTNLHTSRHGFAVDSACKNFAVASDDGKVFIYNIWTGDNITSRPLRKYPFFPSAVTCLEWAPSGGLFAGYGTCLQYWSWAPLTDQLA
SIO_010081: AWJ20_4102
subclass of: SO_0000673
so part of: AWJ20_4102
location: complement(1287534..1289027)
location: region:1287534-1289027:-1
so has part: feature:1287534-1289027:-1:exon

XP_018733775.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1287534-1289027:-1:exon

AWJ20_4103
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PMA1
locus tag: AWJ20_4103
so part of: sequence
location: complement(<1289652..>1292459)
location: region:1289652-1292459:-1
so has part: feature:1289652-1292459:-1:exon
subclass of: SO_0000010

30036199
type: Gene
SIO_000068: ncbigene

position:1289652:-1
position: 1289652
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1292459:-1
position: 1292459
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1289652-1292459:-1:exon

AWJ20_4103
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PMA1
locus tag: AWJ20_4103
product: H(+)-exporting P2-type ATPase PMA1
transcript id: XM_018881159.1
SIO_010081: AWJ20_4103
subclass of: SO_0000673
so part of: AWJ20_4103
location: complement(<1289652..>1292459)
location: region:1289652-1292459:-1
so has part: feature:1289652-1292459:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1289652-1292459:-1:exon

AWJ20_4103
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PMA1
locus tag: AWJ20_4103
inference: similar to AA sequence:KEGG_Orthology:K01535
note: Plasma membrane H+-ATPase; pumps protons out of the cell; major regulator of cytoplasmic pH and plasma membrane potential; P2-type ATPase; Hsp30p plays a role in Pma1p regulation; interactions with Std1p appear to propagate [GAR+]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 10716729]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 15536122]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 11739806]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12469340]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0008553 - hydrogen-exporting ATPase activity, phosphorylative mechanism [Evidence IEA]; GO_function: GO:0008553 - hydrogen-exporting ATPase activity, phosphorylative mechanism [Evidence IDA] [PMID 17912695]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006754 - ATP biosynthetic process [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:1902600 - hydrogen ion transmembrane transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:1902906 - proteasome storage granule assembly [Evidence IMP] [PMID 23690178]; GO_process: GO:0015992 -…
codon start: 1
product: H(+)-exporting P2-type ATPase PMA1
translation: MTSSVDSLGRSIIGSSVLVDEEYSQSPSGKNDDGSVEKESKTQSSESQSKPDSDGDYTEEDIDAFITELQSDDEDNSRAFHEEAHSTDSVKSVPEGLLQTDPQTGLTKEEVTKRRKKYGLNKMSEEKVNIYYKFLLFFVGPIQFVMEAAALLAIGLKDWVDFGVICALLLLNAAVGFIQEYQAGSIVEELKKTLALQAVVLREGLLQEVDAAKIVPGEILQIEEGTIISADGRLVTTGCFLQIDQSAITGESLAVEKRCGDTVYASSTVKRGSTFMIVTATGDQTYVGRAATLVNKASAGSGHFTDVLNGIGSALLVLVIVTLLVVWVACFYRSDPIVKILRYTLAITIVGVPVGLPAVVTTTMAVGAAYLAKKRAIVQKLSAIESLAGVEILCSDKTGTLTKNKLSLGTPFTVDGVEPEELMLTACLAASRKKKGLDAIDKAFFKSLREYPRAKSALTKYKVIKFHPFDPVSKKVTAVVESPSGELITCVKGAPLFVLRTVAEDHEISTSIDEAYKSRVEEFASRGFRSLGVARKRGNGYWEILGIVPCSDPPRHDTFKTVQEAKQLGLSIKMLTGDAVGIAKETSRQLGLGTNIYNAERLGLGGGGDMNGSQVYDFVEGADGFAEVFPQHKYNVVEILQQRGHLVAMTGDGVNDAPSLKKADTGIAVEGASDAARSAADIVFLAPGLSAIIDALKTSRQIFHRMYSYIVYRIALSLHLEIFFGLWIAILDQSLQIELVVFIAIFADLATLAIAYDNAPYSQKPVKWNLPKLWGMSILLGIVLAIGTWITLTTMFLPKGGIIQNFGEVDPILFLQISLSENWLIFVTRANGPFWSSLPSWELVAAVFVVDVLATLFCIFGWFVGGQTSIVTVVRVWIFSFGIFCVCGGLFYLMQDSVAFDRLMHGKNPKKKEKRSFEDFIVAMQRVSTQHEKTT
SIO_010081: AWJ20_4103
subclass of: SO_0000673
so part of: AWJ20_4103
location: complement(1289652..1292459)
location: region:1289652-1292459:-1
so has part: feature:1289652-1292459:-1:exon

XP_018733776.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1289652-1292459:-1:exon

AWJ20_4104
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SAN1
locus tag: AWJ20_4104
so part of: sequence
location: complement(<1293140..>1295671)
location: region:1293140-1295671:-1
so has part: feature:1293140-1295671:-1:exon
subclass of: SO_0000010

30036200
type: Gene
SIO_000068: ncbigene

position:1293140:-1
position: 1293140
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1295671:-1
position: 1295671
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1293140-1295671:-1:exon

AWJ20_4104
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SAN1
locus tag: AWJ20_4104
product: ubiquitin-protein ligase SAN1
transcript id: XM_018881160.1
SIO_010081: AWJ20_4104
subclass of: SO_0000673
so part of: AWJ20_4104
location: complement(<1293140..>1295671)
location: region:1293140-1295671:-1
so has part: feature:1293140-1295671:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1293140-1295671:-1:exon

AWJ20_4104
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: SAN1
locus tag: AWJ20_4104
note: Ubiquitin-protein ligase; involved in proteasome-dependent degradation of aberrant nuclear proteins; targets substrates with regions of exposed hydrophobicity containing 5 or more contiguous hydrophobic residues; contains intrinsically disordered regions that contribute to substrate recognition; prefers a window of exposed hydrophobicity that causes a particular level of protein insolubility, suggesting that San1p evolved to target highly aggregation-prone proteins; GO_component: GO:0005737 - cytoplasm [Evidence IMP] [PMID 20080635]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15797381]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 15078868]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 15797381]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0071630 - nucleus-associated proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 20080635]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 15078868]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IDA,IMP] [PMID 15797381]; GO_process: GO:0051788 - response to misfolded protein [Evidence IMP] [PMID 15797381]
codon start: 1
product: ubiquitin-protein ligase SAN1
translation: MDSNNRSSSPSAGSEHSANNGDDSYQANILYINYSLTLPDMDGPLSTSDLALLFGVNGDNNSNNNNNNNNNNANANAYWRSVSQQFAASGGADAGPGAETGNPPTRSEATGRTSSTRSGTNVDYTGSGFDRGRNTGARTTNFEVAFTNNFQDILDGANIYSWRDTNADSNNNSTSQGTGDRGGNSTNDSSGANDGNPGASRPTRPESGPRQFSLADADRFWRQRGTAVFGPGQAPTPGTSFTSDGVFYTTRSFPIDIRLGTALFGGGDGGSRNPRASKRAIAKLKSVKASSLPESDRSCPICFEKYVDEEEDSVEKSDLKTEDVIDDNTSGMSADSVGDPPESVPESSAQPESTSDSDSTTDTRHNALEMPCNHLFGSHCIKEWLAGSNTCPLCRTTIESQDDYLRSIGQQPESDNNAATLFELIFNVIPNLMSNSTNNSNSNSNTNNNSNANSNGNDNDNDNGINNNNNTQSSSTSGDNTIPSQTRSDSTSIFSINPQRAPRVNSPVSSHTNSGADTPLSQNSTDTAGRANSTLGLSSVAANPIDMSGSSSSSSGTSQQETTQSAASSVVSSASEMSESSSSSSSSRTAATTTSDPGPNLISRPRSGTSSQFLRPLSILLQNLHGRGGSSSRNNNNSTSSSPSQSSQQSRDDGIAPIGNERTTASATRQEPGNTRGGGTGGGVWMGPGGILSSWGPRFVRRHHPYRSPPTEPSSNAESSRQSRESSGRPSTASRSASRNAQVSNHNHLQCASANLSMCSVSGNIPRPDDSRMEEDDDSENSDRLVRLDCGHGYHVPCLRVAMAAHGDREIPNLTGGVDSNDGATREVWCLRCRRYQDISNHE
SIO_010081: AWJ20_4104
subclass of: SO_0000673
so part of: AWJ20_4104
location: complement(1293140..1295671)
location: region:1293140-1295671:-1
so has part: feature:1293140-1295671:-1:exon

XP_018733777.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1293140-1295671:-1:exon

AWJ20_4105
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: FCY1
locus tag: AWJ20_4105
so part of: sequence
location: complement(<1297314..>1297706)
location: region:1297314-1297706:-1
so has part: feature:1297314-1297706:-1:exon
subclass of: SO_0000010

30036201
type: Gene
SIO_000068: ncbigene

position:1297314:-1
position: 1297314
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1297706:-1
position: 1297706
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1297314-1297706:-1:exon

AWJ20_4105
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: FCY1
locus tag: AWJ20_4105
product: cytosine deaminase
transcript id: XM_018881161.1
SIO_010081: AWJ20_4105
subclass of: SO_0000673
so part of: AWJ20_4105
location: complement(<1297314..>1297706)
location: region:1297314-1297706:-1
so has part: feature:1297314-1297706:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1297314-1297706:-1:exon

AWJ20_4105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: FCY1
locus tag: AWJ20_4105
inference: similar to AA sequence:KEGG_Orthology:K01485
note: Cytosine deaminase; zinc metalloenzyme that catalyzes the hydrolytic deamination of cytosine to uracil; of biomedical interest because it also catalyzes the deamination of 5-fluorocytosine (5FC) to form anticancer drug 5-fluorouracil (5FU); GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004131 - cytosine deaminase activity [Evidence IEA]; GO_function: GO:0004131 - cytosine deaminase activity [Evidence IDA] [PMID 15535715]; GO_function: GO:0004131 - cytosine deaminase activity [Evidence IDA] [PMID 9000374]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0044206 - UMP salvage [Evidence IEA]; GO_process: GO:0046087 - cytidine metabolic process [Evidence IMP] [PMID 10501935]; GO_process: GO:0019858 - cytosine metabolic process [Evidence IMP] [PMID 9000374]; GO_process: GO:0008655 - pyrimidine-containing compound salvage [Evidence IMP] [PMID 9000374]
codon start: 1
product: cytosine deaminase
translation: MQKGSPILHGEMDALENAGRLKGEVYKGATMYTTLSPCHMCTGACLMYGIKRVVMGENETFIGGEDLLRSKGVEVINIKSGQCKRMMDKFIKKAPKEWFEDIGEVEDDNEGEKEADIPEDLDSEGSEAEN
SIO_010081: AWJ20_4105
subclass of: SO_0000673
so part of: AWJ20_4105
location: complement(1297314..1297706)
location: region:1297314-1297706:-1
so has part: feature:1297314-1297706:-1:exon

XP_018733778.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1297314-1297706:-1:exon

AWJ20_4106
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: AMS1
locus tag: AWJ20_4106
so part of: sequence
location: complement(<1298237..>1301596)
location: region:1298237-1301596:-1
so has part: feature:1298237-1301596:-1:exon
subclass of: SO_0000010

30036202
type: Gene
SIO_000068: ncbigene

position:1298237:-1
position: 1298237
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1301596:-1
position: 1301596
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1298237-1301596:-1:exon

AWJ20_4106
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: AMS1
locus tag: AWJ20_4106
product: Ams1p
transcript id: XM_018881162.1
SIO_010081: AWJ20_4106
subclass of: SO_0000673
so part of: AWJ20_4106
location: complement(<1298237..>1301596)
location: region:1298237-1301596:-1
so has part: feature:1298237-1301596:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1298237-1301596:-1:exon

AWJ20_4106
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: AMS1
locus tag: AWJ20_4106
inference: similar to AA sequence:KEGG_Orthology:K01191
note: Vacuolar alpha mannosidase; involved in free oligosaccharide (fOS) degradation; delivered to the vacuole in a novel pathway separate from the secretory pathway; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 3281936]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0004559 - alpha-mannosidase activity [Evidence IEA,IEA]; GO_function: GO:0004559 - alpha-mannosidase activity [Evidence ISS] [PMID 2675832]; GO_function: GO:0004559 - alpha-mannosidase activity [Evidence IDA] [PMID 3281936]; GO_function: GO:0030246 - carbohydrate binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_function: GO:0015923 - mannosidase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0044262 - cellular carbohydrate metabolic process [Evidence ISS] [PMID 2675832]; GO_process: GO:0006013 - mannose metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009313 - oligosaccharide catabolic process [Evidence IMP] [PMID 12723970]
codon start: 1
product: Ams1p
translation: MSDQYARFNNKPVPVKIPKLYDGRIRQFTDRGGDYHDLNLPHFYDRARNDGTDYVKLEVYDVPKLQRPHFKDAIADAKWRKTSKGNSFGPSWSTHWFRINIRIPSDWKYAEQVLFEWNCGNEGLIYTNEGNAVVGLSGQERREWIIPKDWQLDGKWHQFYIETSCNEMSGNNSPPDPNRYFRLDTADIVFPNLEARALNIDFWIIGDASREFPGDSWQKHKARDVLNRIIDVFDRNNPDESIKKGREIAREYIGSEVDSSQVYKTANKAPVYGIGNCHIDTAWLWPFAETHRKVGRSWATQLNLIERYPEYTFTASQVQQFKWLSEDYPDVFARVKEAVKGGRFIPIGGSWVECDTNMPSGEAMLRQFLLGQRFFQHHFGFRTKTYWLPDTFGYSPQIPQFCRLVGIDRFLTQKLSWNSINSFPHSTFNWVALDGSQVVAHMPPDNTYTAQAHFGDVSRSLRQHKNLDVDQHGMLLFGHGDGGGGPTSEMLEKLRRCRGLSDTVDLLPRVQLGKTVDEFYDDILASTDNGNKLVTWVGELYFEFHRGTYTTQAAIKKGNRVSEVIMHDVEFLATLASLKNKDYKYPTKDIDELWENVCLNQFHDVLPGSGIEMIYEDARAIYQHIAEQGEKLAKEALDALNISTHYIPGHSLGALNTLPWGRSQVIEVPTEKIPREVQASSSFISQANGDKLLVQVQAEGSGVALPTTVSSSIPHATAKEIRKGVFVLENGKLRATIENGVLTSVWDQDAQREIIPKGATGNQFVIFEDQCLSFPAWETELYSLDSRKELSAGTVRISQKGPLRAAVEIENVISEQSRIKTTISLDAYQKPTKESEGAFPDISYLEFSCEVEWHETYKFLKVEFPVDVHSDVATYETSYGAHKRPTHFNTTWEVAKFEVPAHKWADLSDYSYGVSLINDCKYGYAIHGNVMRLSLLRAPKSPDAHADMGSHQFRYALLPHRGGVNPDVVRAAYNFNHPLEIVYLPNSNPADIDGYDSMVIDTVPEPKGDEVLRSFTLDGDKSLIMSAVKRFEDDEDVSRGLLPVRGASGRKSVIIRVYESLGGRARAYLNSKQSIARVFKTNALEDDEEALDILSGVDGDKVPIELRAFEIATFRIELA
SIO_010081: AWJ20_4106
subclass of: SO_0000673
so part of: AWJ20_4106
location: complement(1298237..1301596)
location: region:1298237-1301596:-1
so has part: feature:1298237-1301596:-1:exon

XP_018733779.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1298237-1301596:-1:exon

AWJ20_4107
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: JLP1
locus tag: AWJ20_4107
so part of: sequence
location: complement(<1302377..>1303492)
location: region:1302377-1303492:-1
so has part: feature:1302377-1303492:-1:exon
subclass of: SO_0000010

30036203
type: Gene
SIO_000068: ncbigene

position:1302377:-1
position: 1302377
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1303492:-1
position: 1303492
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1302377-1303492:-1:exon

AWJ20_4107
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: JLP1
locus tag: AWJ20_4107
product: Jlp1p
transcript id: XM_018881163.1
SIO_010081: AWJ20_4107
subclass of: SO_0000673
so part of: AWJ20_4107
location: complement(<1302377..>1303492)
location: region:1302377-1303492:-1
so has part: feature:1302377-1303492:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1302377-1303492:-1:exon

AWJ20_4107
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: JLP1
locus tag: AWJ20_4107
inference: similar to AA sequence:KEGG_Orthology:K19245
note: Fe(II)-dependent sulfonate/alpha-ketoglutarate dioxygenase; involved in sulfonate catabolism for use as a sulfur source; contains sequence that resembles a J domain (typified by the E. coli DnaJ protein); induced by sulphur starvation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0000907 - sulfonate dioxygenase activity [Evidence IDA] [PMID 10482536]; GO_process: GO:0046306 - alkanesulfonate catabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0044273 - sulfur compound catabolic process [Evidence IMP] [PMID 10482536]
codon start: 1
product: Jlp1p
translation: MTSLASRIQSIAASTYAGTNAKQEEIKKTLRFPQYAPGWDPKEKFPPYEVIEFEDKGLKADPELKNLFPNGLPNSHAEQRASTSEKIVKYGYSVSDLTPKFGSEVRGIQLSQLSDEAKNDLARYVAERGVVAFRNQDFRELPIPQALKWAEYFGRQHIHPTSGSPEGYPEVHLVHRAPGNTSYQDFYAQNISSIAWHSDVTYELQPPGTTILGILELPPTGGDTLFADTEEIYNRLSPAFKSRLNGLRAVHSAHEQAQQSAARGGVVRREPITTSHPITRTHPVTKRKSLFVNHQFTRYIEGFKSEESEYLLNFLYDIIGKSVDTHVRVKWEDGDIILWDNRRTAHSALLDFEHHQRHAFRYTPQAEVPQE
SIO_010081: AWJ20_4107
subclass of: SO_0000673
so part of: AWJ20_4107
location: complement(1302377..1303492)
location: region:1302377-1303492:-1
so has part: feature:1302377-1303492:-1:exon

XP_018733780.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1302377-1303492:-1:exon

AWJ20_4108
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: NUP170
locus tag: AWJ20_4108
so part of: sequence
location: complement(<1303922..>1307581)
location: region:1303922-1307581:-1
so has part: feature:1303922-1307581:-1:exon
subclass of: SO_0000010

30036204
type: Gene
SIO_000068: ncbigene

position:1303922:-1
position: 1303922
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1307581:-1
position: 1307581
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1303922-1307581:-1:exon

AWJ20_4108
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: NUP170
locus tag: AWJ20_4108
product: Nup170p
transcript id: XM_018881164.1
SIO_010081: AWJ20_4108
subclass of: SO_0000673
so part of: AWJ20_4108
location: complement(<1303922..>1307581)
location: region:1303922-1307581:-1
so has part: feature:1303922-1307581:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1303922-1307581:-1:exon

AWJ20_4108
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: NUP170
locus tag: AWJ20_4108
inference: similar to AA sequence:KEGG_Orthology:K14312
note: Subunit of the inner ring of the nuclear pore complex (NPC); contributes to NPC assembly and nucleocytoplasmic transport; both Nup170p and NUP157p are similar to human Nup155p; NUP170 has a paralog, NUP157, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0044611 - nuclear pore inner ring [Evidence IDA] [PMID 18046406]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IEA]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IMP] [PMID 12509452]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IMP] [PMID 17418788]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IMP] [PMID 19414606]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IGI] [PMID 19414608]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IGI] [PMID 20498018]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 11290711]; GO_process: GO:0070869 - heterochromatin assembly involved in chromatin silencing [Evidence IMP] [PMID 23452847]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence IGI,IMP,IPI] [PMID 12473689]; GO_process: GO:0051292 - nuclear pore complex assembly [Evidence IGI] [PMID 19414608]; GO_process: GO:0051292 - nuclear pore complex assembly [Evidence IGI] [PMID 20498018]; GO_process: GO:0006913 - nucleocytoplasmic transport [Evidence IEA]; GO_process: GO:0006913 - nucleocytoplasmi…
codon start: 1
product: Nup170p
translation: MGMFPAIDRAWITVDNRLYLWNYKNGNDFSTFDELDHTIFSVNLVKPKPGVFVDSINYLLVLCTPVELYILGVQYDKVKSSIEFHYSGINVSISGLDVDTLVASEKSGRIFFSGANDGVNLWEVVYTNEDTWFKGKCSKICHTRSGLVSALTPSFSLPSVPFLPVDGSKIMGSLGLGSHAAPETIISMQIDDTRDLLYTLSSTSTIRIYHIPKGNTANLALTYTLPQILSNFQMASASSETRNAAASKTLKIVSLQVVKTYQSAQFHLVAITSGGFRLYIKAGRQYGVSVGDKPPNTIQVVGYRPPPVGEPVVNPDGTLSKPIPVLNTAKPQSKIFEPAHFFCVVPDEANSGGDKIFVSSLDSGRVIHILNQPNSVPTYSENACFLEVEGFVQSVELLTPPFRPSAKPEGFLNECAAQYSLPPPQVAVLTNTGIYVFTRRLPYQICENLLGSDDIKSFFDAYGRTETCASALSVASKSITGSSSSSSAQAYASREMATKIYIEIGGRAHLRYDDESTYALVRSANNTGSETIRLSGRFDGLATYVSRTIRDLWEANVFKSTKGAGAVTFSLGSPRKSLESVQLTLMEIAEFLERNHAFIEGLSGIPDGFIDAGLSSRAEEISLQAEHRGLDSLVKLIKSCREGLAFLLLLHDETAHASDGLEAVMSYLPKELREKVEELTFKHFFTTADGTELAKELVTCLVNRSISKGESVDSISRVLQDRCESYCSSSDVIIYKALEDLRKAKSLAEGDPELRIQSLYDSVKMFKKAAASIQLDSLKEAISEYVGLKYYSGAIEVALSVAFVGDKGNLALGYLHDGKVEGDPRQVAYDARVKVYNLIFEVLDIVDEKAQLSTESAVPGVNSLSDDEKARQEAYNICFEAQDEVFHFCFYDWFVYRGVESRLLAVNTPYILPYLVANAKTNLTIADLLWVYYQKRGDNYAAAQVLFSLAKSDFDIALGSRLEFLSRARGYCNADGPPGLRSAMTQLGSSIQEHLDIASIQDDILQAVREDIRFIPEKRDEAVAVLNGQLLNVSQLYNDYAYPLGYHEICLVIYQVTDYRGHDEITKSWQKLINSSTESDDELSNYEHVSSVVQRLGQQFMNAEFVFPTDVLVPMLETFSLERAPNAPRGWVIDTFLNAGVSSETIYALLSDLLERKEAPFDDKYGYEKLAMDLAYLLTRWSSESRGRTISHIVSRDDIEKLRTVIPQKEYAEILRRMR
SIO_010081: AWJ20_4108
subclass of: SO_0000673
so part of: AWJ20_4108
location: complement(1303922..1307581)
location: region:1303922-1307581:-1
so has part: feature:1303922-1307581:-1:exon

XP_018733781.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1303922-1307581:-1:exon

AWJ20_4109
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: RIM21
locus tag: AWJ20_4109
so part of: sequence
location: <1309183..>1311084
location: region:1309183-1311084:1
so has part: feature:1309183-1311084:1:exon
subclass of: SO_0000010

30036205
type: Gene
SIO_000068: ncbigene

position:1309183:1
position: 1309183
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1311084:1
position: 1311084
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1309183-1311084:1:exon

AWJ20_4109
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: RIM21
locus tag: AWJ20_4109
product: Rim21p
transcript id: XM_018881165.1
SIO_010081: AWJ20_4109
subclass of: SO_0000673
so part of: AWJ20_4109
location: <1309183..>1311084
location: region:1309183-1311084:1
so has part: feature:1309183-1311084:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1309183-1311084:1:exon

AWJ20_4109
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: RIM21
locus tag: AWJ20_4109
note: pH sensor molecule, component of the RIM101 pathway; has a role in cell wall construction and alkaline pH response; is glycosylated and phosphorylated; interacts with Dfg16p and Rim9p to form a pH-sensing complex; localization to the plasma membrane is dependent on Dfg16p and Rim9p; has similarity to A. nidulans PalH; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 23019326]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030437 - ascospore formation [Evidence IMP] [PMID 10821185]; GO_process: GO:0071469 - cellular response to alkalinity [Evidence IMP] [PMID 23019326]; GO_process: GO:0009272 - fungal-type cell wall biogenesis [Evidence IGI,IMP] [PMID 16524906]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 10821185]
codon start: 1
product: Rim21p
translation: MSEASMKIAERDIWRQPSPTTQTAVGCQPLVLSTGTMILNATKTVVIDPEYPATYTPFCPNGVLPIGVFKSPTLMEMGDYGNLLANDSSDLSSPSSTSMPMLLPFSNWQSPFYTSTVPATIAIAATTTVCWTLTLALFCSPRRPVFMKSLLLIACVCMTIMSAVYMKYLRRQYDSGFVDGLLIVDNVDDSTLESVALMIGEFVLLLAELTTLMRLFPRKREQRLIVFTGALVICTDRVLWGISAFEPSSPEDRTDPVDAIIVFAYLFSIATSIIYAGAIVIYSWWKWRIAYKPDLLIIAFLSHIATFLPIVLFVLDLADQYLDSWSTYAKLASLLCASVCVWVWVDRIEDYEKTLELHSVLGRQQYTEDHNPFDFEGGHGKLSFKAVKHLSASSDNSTANSTVDSSKPNNNKTAGKQDTSKRTRRSNTAGNSNNNRDQENAEINNKRNNTNHNRNEIQKNPTVTYVIDNIANDNSCSRSNDNNGSGTSGITHDFEPHNAAAIAHERKRHSPSLSTLASEPNDHNEPPITTILSNSTTNSQARSSSTPLTSPANASKTWNSRLLKLIKFNILNRPGTSSSTQTTYVVSSADHDGAPDQTASGAIPLQSFDSSSSEGPMTVHKHPFRSTRPQSPA
SIO_010081: AWJ20_4109
subclass of: SO_0000673
so part of: AWJ20_4109
location: 1309183..1311084
location: region:1309183-1311084:1
so has part: feature:1309183-1311084:1:exon

XP_018733782.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1309183-1311084:1:exon

AWJ20_4110
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4110
so part of: sequence
location: complement(<1311241..>1311726)
location: region:1311241-1311726:-1
so has part: feature:1311241-1311726:-1:exon
subclass of: SO_0000010

30036207
type: Gene
SIO_000068: ncbigene

position:1311241:-1
position: 1311241
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1311726:-1
position: 1311726
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1311241-1311726:-1:exon

AWJ20_4110
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4110
product: hypothetical protein
transcript id: XM_018881167.1
SIO_010081: AWJ20_4110
subclass of: SO_0000673
so part of: AWJ20_4110
location: complement(<1311241..>1311726)
location: region:1311241-1311726:-1
so has part: feature:1311241-1311726:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1311241-1311726:-1:exon

AWJ20_4110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4110
codon start: 1
product: hypothetical protein
translation: MYAIRKASPFPAYADFTVYLEEQRIADSQSFVESLSELELALLICAARAEVKLESDTLNFNLVYDEYVEVGKRIREDRRAAIVSADVDGYRIWSRQVARSAWEKLEAMELVVYISSTATGKAAAAGAALDDELKLIKVDASLLEISNMIGRSHPLHKWTRI
SIO_010081: AWJ20_4110
subclass of: SO_0000673
so part of: AWJ20_4110
location: complement(1311241..1311726)
location: region:1311241-1311726:-1
so has part: feature:1311241-1311726:-1:exon

XP_018733783.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1311241-1311726:-1:exon

AWJ20_4111
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: ORC4
locus tag: AWJ20_4111
so part of: sequence
location: complement(<1311847..>1312758)
location: region:1311847-1312758:-1
so has part: feature:1311847-1312758:-1:exon
subclass of: SO_0000010

30036208
type: Gene
SIO_000068: ncbigene

position:1311847:-1
position: 1311847
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1312758:-1
position: 1312758
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1311847-1312758:-1:exon

AWJ20_4111
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: ORC4
locus tag: AWJ20_4111
product: origin recognition complex subunit 4
transcript id: XM_018881168.1
SIO_010081: AWJ20_4111
subclass of: SO_0000673
so part of: AWJ20_4111
location: complement(<1311847..>1312758)
location: region:1311847-1312758:-1
so has part: feature:1311847-1312758:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1311847-1312758:-1:exon

AWJ20_4111
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: ORC4
locus tag: AWJ20_4111
inference: similar to AA sequence:KEGG_Orthology:K02606
note: Subunit of the origin recognition complex (ORC); ORC directs DNA replication by binding to replication origins and is also involved in transcriptional silencing; ORC4 has a paralog, RIF2, that arose from the whole genome duplication; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IDA] [PMID 9554851]; GO_component: GO:0005664 - nuclear origin of replication recognition complex [Evidence IDA,IMP] [PMID 9372948]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 16824194]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 9335335]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0000808 - origin recognition complex [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 16824194]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IMP] [PMID 16716188]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IDA] [PMID 12897051]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IDA] [PMID 16824194]
codon start: 1
product: origin recognition complex subunit 4
translation: MTMDIDQPGDLNMDSLVSQAKNHVLAKLTGKKLGQLANLETEQKEIQTLLESTIVSNEGNSCLLMGPRSTGKTTLIETTIKNLKIKYPDQFITIRLSGFAQSEDKMALREITHQLDTILNSKLDAATQQAVEEAIAAGEFTGIEQKSISETLRGLLASFEHADAQSMSVIFILEEFDRFTVHPRQTLLYNLLDLSQTAKVGIAVVGTTARMNTREMLEKRVRSRFSQRLYTIKRPGTLESFWNICTTNLFLDDQAFPSDFSHGWNSHLEVCVLRGSTSGGWGSAPDPVGALALLESCVGDPVE
SIO_010081: AWJ20_4111
subclass of: SO_0000673
so part of: AWJ20_4111
location: complement(1311847..1312758)
location: region:1311847-1312758:-1
so has part: feature:1311847-1312758:-1:exon

XP_018733784.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1311847-1312758:-1:exon

AWJ20_4112
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4112
so part of: sequence
location: <1312948..>1314735
location: region:1312948-1314735:1
so has part: feature:1312948-1314735:1:exon
subclass of: SO_0000010

30036209
type: Gene
SIO_000068: ncbigene

position:1312948:1
position: 1312948
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1314735:1
position: 1314735
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1312948-1314735:1:exon

AWJ20_4112
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4112
product: hypothetical protein
transcript id: XM_018881169.1
SIO_010081: AWJ20_4112
subclass of: SO_0000673
so part of: AWJ20_4112
location: <1312948..>1314735
location: region:1312948-1314735:1
so has part: feature:1312948-1314735:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1312948-1314735:1:exon

AWJ20_4112
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4112
codon start: 1
product: hypothetical protein
translation: MVIAIQGRWYPLLRVQCQPWRRFESGIRLISNGTGSVGSIELTRPISAHQFGKHMRSILKLKIPPVVGIALSGGVDSMALAYLASRFFANYNTRIVAFTVDHGARPESASEASVTVKRNLGDLNIDHHVLTIKWPENKVPEEKFEEMARSERRKTLIEACEEHGIQHLLLAHTLDDQFETFIMRLCKGSSIYGLAGMREITYTSVLDKPDDCDEGVLPADRDSGHSGKGRGVHFVRPLLTHNKRELEQTCLTNNIQWVEDKTNHDPTFTVRNSIRTLFASPNNLPLALQPASLTKTLKILSKTRSEIEKEAEQTLEFMLRRKLISIDRKLGIAYLTEFEGFNKLRISVKTLLFMYIMRQISSLSNLDYKLASIDSFVRTVSSKPITRLENFYTCGLRVSVYPEKKKTKINTTSHIEKEQQVLFSESTGTSIPTDRKSAETTVPQRYTIWRERIRRAHQNKYIVMPLPEETLQWSEWLLFDNRFWIRIRATSTAPQRSVSIRLLYELSDIKKVLTGLLDLDKSYRWPFEATLASQPFFMYHDPDTPNELSPTSLIGFPTLGLYDAEKSGVEIECRLKTVSIIPGTELGLESQTNRV
SIO_010081: AWJ20_4112
subclass of: SO_0000673
so part of: AWJ20_4112
location: 1312948..1314735
location: region:1312948-1314735:1
so has part: feature:1312948-1314735:1:exon

XP_018733785.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1312948-1314735:1:exon

AWJ20_4113
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
locus tag: AWJ20_4113
so part of: sequence
location: complement(<1314842..>1315777)
location: region:1314842-1315777:-1
so has part: feature:1314842-1315777:-1:exon
subclass of: SO_0000010

30036210
type: Gene
SIO_000068: ncbigene

position:1314842:-1
position: 1314842
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1315777:-1
position: 1315777
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1314842-1315777:-1:exon

AWJ20_4113
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
locus tag: AWJ20_4113
product: hypothetical protein
transcript id: XM_018881170.1
SIO_010081: AWJ20_4113
subclass of: SO_0000673
so part of: AWJ20_4113
location: complement(<1314842..>1315777)
location: region:1314842-1315777:-1
so has part: feature:1314842-1315777:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1314842-1315777:-1:exon

AWJ20_4113
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
locus tag: AWJ20_4113
inference: similar to AA sequence:KEGG_Orthology:K13205
codon start: 1
product: hypothetical protein
translation: MLINDEIGELNVSATKSRLGEMYSFMVPYPDPEGSNWPVLTDRITLRVAESVLPSTGIVTSSSTSKEENELLLKSLRDSAAARIAQETDLAQKKAGQEGSSSAGPIPSSVEEDRIIKSLVDQNTEELKFTELDLRKTWKTGATGRDVTLNSFDKSWYLNNTVKVFGDLLGELQLSYVLMVIFANFSGAQQWKKITELVLRCRSDVAVHPQRYIEFFNIVYHQIKACPVEYIDEFLEKSFLQKSFGHFRRLLVSSGTSQLEPALKIAPQVKAAADRVFDTLRVSGVPIPFLREGDEVDSEDEDDEDKPVVVG
SIO_010081: AWJ20_4113
subclass of: SO_0000673
so part of: AWJ20_4113
location: complement(1314842..1315777)
location: region:1314842-1315777:-1
so has part: feature:1314842-1315777:-1:exon

XP_018733786.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1314842-1315777:-1:exon

AWJ20_4114
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: PEX7
locus tag: AWJ20_4114
so part of: sequence
location: <1316743..>1317897
location: region:1316743-1317897:1
so has part: feature:1316743-1317897:1:exon
subclass of: SO_0000010

30036211
type: Gene
SIO_000068: ncbigene

position:1316743:1
position: 1316743
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1317897:1
position: 1317897
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1316743-1317897:1:exon

AWJ20_4114
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: PEX7
locus tag: AWJ20_4114
product: Pex7p
transcript id: XM_018881171.1
SIO_010081: AWJ20_4114
subclass of: SO_0000673
so part of: AWJ20_4114
location: <1316743..>1317897
location: region:1316743-1317897:1
so has part: feature:1316743-1317897:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1316743-1317897:1:exon

AWJ20_4114
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 796027
gene: PEX7
locus tag: AWJ20_4114
inference: similar to AA sequence:KEGG_Orthology:K13341
note: Peroxisomal signal receptor for peroxisomal matrix proteins; recognizes the N-terminal nonapeptide signal (PTS2); WD repeat protein; defects in human homolog cause lethal rhizomelic chondrodysplasia punctata (RCDP); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 15545321]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 7957058]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 15545321]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 7535304]; GO_function: GO:0005053 - peroxisome matrix targeting signal-2 binding [Evidence IPI] [PMID 8636211]; GO_function: GO:0005053 - peroxisome matrix targeting signal-2 binding [Evidence IDA] [PMID 8670791]; GO_process: GO:0016560 - protein import into peroxisome matrix, docking [Evidence IPI] [PMID 10087260]; GO_process: GO:0016560 - protein import into peroxisome matrix, docking [Evidence IPI] [PMID 9094717]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]
codon start: 1
product: Pex7p
translation: MLKFRTSGFSGYSVAYSPFYDSKIAVATAANFGLVGNGRLYVLDIGGDGVIRPQAQFDTQDGLFGLSWSESHENHIITANGDGSLKLFDITTKQQFPLQVYHEHSREVFSVNWNMKDKTIFCSGSWDGTIKVWSPGHCSNSVMTFNANINQTNIGPGTGPCAVDGPGAAAMAATVPLLRSEGAGTPQQQQQQQALRKSAANCVYSAKFSPYEPTIIASTHSDSSLKVWDTRQSAGSGHPVLSIPEAHLGGDCLSVDWNKYRPTVLATSGVDKAIKIWDTRNARSPINDLRGHEYAVRSVSWSPHSGDTLLSTSYDMTARVWRDTSASPNQAPHNPRFNPTKGLQKVFGAHTEFVFDCDWSMWGQPGWVATTGWDEMVYIWHAES
SIO_010081: AWJ20_4114
subclass of: SO_0000673
so part of: AWJ20_4114
location: 1316743..1317897
location: region:1316743-1317897:1
so has part: feature:1316743-1317897:1:exon

XP_018733787.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1316743-1317897:1:exon

AWJ20_4115
type: Gene
subclass of: SO_0000704
RO_0002162: 796027
gene: SPE3
locus tag: AWJ20_4115
so part of: sequence
location: <1319321..>1319977
location: region:1319321-1319977:1
so has part: feature:1319321-1319977:1:exon
subclass of: SO_0000010

30036212
type: Gene
SIO_000068: ncbigene

position:1319321:1
position: 1319321
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1319977:1
position: 1319977
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1319321-1319977:1:exon

AWJ20_4115
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 796027
gene: SPE3
locus tag: AWJ20_4115
product: spermidine synthase
transcript id: XM_018881172.1
SIO_010081: AWJ20_4115
subclass of: SO_0000673
so part of: AWJ20_4115
location: <1319321..>1319977
location: region:1319321-1319977:1
so has part: feature:1319321-1319977:1:exon