Ctenopharyngodon idella mitochondrion, complete genome.
type: Entry
definition: Ctenopharyngodon idella mitochondrion, complete genome.
sequence version: NC_010288.1
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_010288.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Ctenopharyngodon idella (grass carp)
organism: Ctenopharyngodon idella
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Xenocyprididae; Xenocypridinae; Ctenopharyngodon.
reference: 1
references: 18706492
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence was derived from EU391390.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16609
topology: circular
so has quality: SO_0000988
location: 1..16609
location: region:1-16609:1
RO_0002162: 7959

NC_010288
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Complete mitochondrial genome of the grass carp (Ctenopharyngodon idella, Teleostei): insight into its phylogenic position within Cyprinidae
author: Wang, C.
author: Chen, Q.
author: Lu, G.
author: Xu, J.
author: Yang, Q.
author: Li, S.
journal: Gene 424 (1-2), 96-101 (2008)
pubmed: 18706492

18706492
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (25-JAN-2008) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Wang, C.
author: Chen, Q.
author: Li, S.
journal: Submitted (14-JAN-2008) College of Aquatic-life Science and Technology, Shanghai Fisheries University, 334 Jungond Road, Shanghai 200090, P.R. China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16609:1
position: 16609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16609:1:source
so part of: sequence
organism: Ctenopharyngodon idella
organelle: mitochondrion
mol type: genomic DNA
genotype: Yangtze River

7959
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7959
product: tRNA-Phe
so part of: sequence
location: 1..69
location: region:1-69:1
so has part: feature:1-69:1:region

position:69:1
position: 69
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-69:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 7959
product: s-rRNA
note: 12S ribosomal RNA
so part of: sequence
location: 70..1027
location: region:70-1027:1
so has part: feature:70-1027:1:region

position:70:1
position: 70
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1027:1
position: 1027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:70-1027:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7959
product: tRNA-Val
so part of: sequence
location: 1028..1099
location: region:1028-1099:1
so has part: feature:1028-1099:1:region

position:1028:1
position: 1028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1099:1
position: 1099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1028-1099:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 7959
product: l-rRNA
note: 16S ribosomal RNA
so part of: sequence
location: 1100..2790
location: region:1100-2790:1
so has part: feature:1100-2790:1:region

position:1100:1
position: 1100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2790:1
position: 2790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1100-2790:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7959
product: tRNA-Leu
note: Leu1
codon recognized: UUR
so part of: sequence
location: 2792..2867
location: region:2792-2867:1
so has part: feature:2792-2867:1:region

position:2792:1
position: 2792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2867:1
position: 2867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2792-2867:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 7959
gene: ND1
so part of: sequence
location: 2869..3843
location: region:2869-3843:1
so has part: feature:2869-3843:1:exon
subclass of: SO_0000010

5857715
type: Gene
SIO_000068: ncbigene

position:2869:1
position: 2869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3843:1
position: 3843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2869-3843:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7959
gene: ND1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MLNTLMNHLINPLAYIVPVLLAVAFLTLIERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPILALTLAMTLWAPMPMPYPVIDLNLGVLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFSGGYTLQTFSTAQESIWLLAPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTFSAVLFLGTSHIHHIPELTTISLMTKAALLSIVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVLWHIALPIALAGLPPQL
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2869..3843
location: region:2869-3843:1
so has part: feature:2869-3843:1:exon

YP_001654966.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2869-3843:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7959
product: tRNA-Ile
so part of: sequence
location: 3848..3919
location: region:3848-3919:1
so has part: feature:3848-3919:1:region

position:3848:1
position: 3848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3919:1
position: 3919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3848-3919:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7959
product: tRNA-Gln
so part of: sequence
location: complement(3918..3988)
location: region:3918-3988:-1
so has part: feature:3918-3988:-1:region

position:3918:-1
position: 3918
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3988:-1
position: 3988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3918-3988:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7959
product: tRNA-Met
so part of: sequence
location: 3990..4058
location: region:3990-4058:1
so has part: feature:3990-4058:1:region

position:3990:1
position: 3990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4058:1
position: 4058
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3990-4058:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 7959
gene: ND2
so part of: sequence
location: 4059..5103
location: region:4059-5103:1
so has part: feature:4059-5103:1:exon
subclass of: SO_0000010

5857718
type: Gene
SIO_000068: ncbigene

position:4059:1
position: 4059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5103:1
position: 5103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4059-5103:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7959
gene: ND2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:5103,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPYVLAILLSSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMIMFASTTNAWITGEWDMNNMSNPLASTMIIIALALKIGLAPMHFWMPEVLQGLDLLTGLILSTWQKLAPFALIIQTAQAIDPMLLTALGVTSTLVGGWGGLNQTQLRKILAYSSIAHMGWMIIILQYAPQLTLVALGTYIFMTSAAFLTLKTSSATKINTLTMTWSKSPTLTATTALLLLSLGGLPPLTGFMPKWLILQELAKQSLPITATIMALAALLSLYFYLRLCYAMTLTISPNTTNSIAPWRTQTTQSSLPLALSTSIALGLLPMTPAILMLTT
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 4059..5103
location: region:4059-5103:1
so has part: feature:4059-5103:1:exon

YP_001654967.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4059-5103:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7959
product: tRNA-Trp
so part of: sequence
location: 5104..5174
location: region:5104-5174:1
so has part: feature:5104-5174:1:region

position:5104:1
position: 5104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5174:1
position: 5174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5104-5174:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7959
product: tRNA-Ala
so part of: sequence
location: complement(5176..5244)
location: region:5176-5244:-1
so has part: feature:5176-5244:-1:region

position:5176:-1
position: 5176
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5244:-1
position: 5244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5176-5244:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7959
product: tRNA-Asn
so part of: sequence
location: complement(5246..5318)
location: region:5246-5318:-1
so has part: feature:5246-5318:-1:region

position:5246:-1
position: 5246
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5318:-1
position: 5318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5246-5318:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7959
product: tRNA-Cys
so part of: sequence
location: complement(5351..5418)
location: region:5351-5418:-1
so has part: feature:5351-5418:-1:region

position:5351:-1
position: 5351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5418:-1
position: 5418
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5351-5418:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7959
product: tRNA-Tyr
so part of: sequence
location: complement(5420..5490)
location: region:5420-5490:-1
so has part: feature:5420-5490:-1:region

position:5420:-1
position: 5420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5490:-1
position: 5490
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5420-5490:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 7959
gene: COX1
so part of: sequence
location: 5492..7042
location: region:5492-7042:1
so has part: feature:5492-7042:1:exon
subclass of: SO_0000010

5857708
type: Gene
SIO_000068: ncbigene

position:5492:1
position: 5492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7042:1
position: 7042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5492-7042:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7959
gene: COX1
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MAITRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGSLLGDDQIYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMIGAPDMAFPRMNNKSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTTINMKPPAISQYQTPLFVWAVLVTAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHVVAYYAGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGSIKWETPMLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAAFVHWFPLFTGYTLNDTWTKIHFGVMFIGVNLTFFPQHFLGLAGMPRRYSDYPDAYALWNTVSSIGSLISLVAVIMFLFILWEAFAAKREVSSVELTMTNAEWLHGCPPPYHTFEEPAFVQVQSN
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5492..7042
location: region:5492-7042:1
so has part: feature:5492-7042:1:exon

YP_001654968.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5492-7042:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7959
product: tRNA-Ser
note: Ser2
codon recognized: UCN
so part of: sequence
location: complement(7043..7113)
location: region:7043-7113:-1
so has part: feature:7043-7113:-1:region

position:7043:-1
position: 7043
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7113:-1
position: 7113
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7043-7113:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7959
product: tRNA-Asp
so part of: sequence
location: 7117..7190
location: region:7117-7190:1
so has part: feature:7117-7190:1:region

position:7117:1
position: 7117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7190:1
position: 7190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7117-7190:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 7959
gene: COX2
so part of: sequence
location: 7205..7895
location: region:7205-7895:1
so has part: feature:7205-7895:1:exon
subclass of: SO_0000010

5857710
type: Gene
SIO_000068: ncbigene

position:7205:1
position: 7205
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7895:1
position: 7895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7205-7895:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7959
gene: COX2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:7895,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHPTQLGFQDAASPVMEELLHFHDHALMIVFLISTLVLYIIIAMVSTKLTNKYILDSQEIEIVWTILPAVILVLIALPSLRILYLMDEINDPHLTIKAMGHQWYWSYEYTDYEDLGFDSYMIPTQDLTPGQFRLLETDHRMVVPMESPVRVLVSAEDVLHSWAVPSLGVKMDAVPGRLNQAAFIASRPGVFYGQCSEICGANHSFMPIVVEAVPLEHFESWSSLMLEDA
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7205..7895
location: region:7205-7895:1
so has part: feature:7205-7895:1:exon

YP_001654969.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7205-7895:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7959
product: tRNA-Lys
so part of: sequence
location: 7896..7971
location: region:7896-7971:1
so has part: feature:7896-7971:1:region

position:7896:1
position: 7896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7971:1
position: 7971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7896-7971:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 7959
gene: ATP8
so part of: sequence
location: 7973..8137
location: region:7973-8137:1
so has part: feature:7973-8137:1:exon
subclass of: SO_0000010

5857709
type: Gene
SIO_000068: ncbigene

position:7973:1
position: 7973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8137:1
position: 8137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7973-8137:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7959
gene: ATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNPNPWFAILVFSWIVFLTIIPTKILNHTTPNELTPMSEEKHKTEPWDWPW
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7973..8137
location: region:7973-8137:1
so has part: feature:7973-8137:1:exon

YP_001654970.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7973-8137:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 7959
gene: ATP6
so part of: sequence
location: 8131..8814
location: region:8131-8814:1
so has part: feature:8131-8814:1:exon
subclass of: SO_0000010

5857707
type: Gene
SIO_000068: ncbigene

position:8131:1
position: 8131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8814:1
position: 8814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8131-8814:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7959
gene: ATP6
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: MMVSFFDQFASPSFLGIPLIAIAIALPWVLFPTPPSRWINNRLVTVQTWFINRFTNQLMMPLNVGGHKWALLLASLMVFLITINMLGLLPYTFTPTTQLSLNMGFAVPLWLATVIIGMRNQPTVALGHLLPEGTPIPLIPVLIIIETISLFIRPLALGVRLTANLTAGHLLIQLIATAVFVLLPMMPTVAILTATVLFLLTLLEVAVAMIQAYVFVLLLSLYLQENV
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 8131..8814
location: region:8131-8814:1
so has part: feature:8131-8814:1:exon

YP_001654971.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8131-8814:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 7959
gene: COX3
so part of: sequence
location: 8814..9598
location: region:8814-9598:1
so has part: feature:8814-9598:1:exon
subclass of: SO_0000010

5857713
type: Gene
SIO_000068: ncbigene

position:9598:1
position: 9598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8814-9598:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7959
gene: COX3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9597..9598,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MAHQAHAYHMVDPSPWPLTGAVGALLMTSGLAIWFHFHSTTLMTLGMILLLLTMFQWWRDIIREGTFQGHHTPPVQKGLRYGMILFITSEVFFFLGFFWAFYHSSLAPTPELGGCWPPTGIIPLDPFEVPLLNTAVLLASGVTVTWAHHSIMEGERKQAIQSLALTILLGFYFTALQAMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQIQYHFTSEHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8814..9598
location: region:8814-9598:1
so has part: feature:8814-9598:1:exon

YP_001654972.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8814-9598:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7959
product: tRNA-Gly
so part of: sequence
location: 9599..9670
location: region:9599-9670:1
so has part: feature:9599-9670:1:region

position:9599:1
position: 9599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9670:1
position: 9670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9599-9670:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 7959
gene: ND3
so part of: sequence
location: 9671..10019
location: region:9671-10019:1
so has part: feature:9671-10019:1:exon
subclass of: SO_0000010

5857711
type: Gene
SIO_000068: ncbigene

position:9671:1
position: 9671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10019:1
position: 10019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9671-10019:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7959
gene: ND3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:10019,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNLITTILIITVALSSILAIVSFWLPQMNPDAEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLHNPTGTFFWATTVLILLTLGLIYEWTQGGLEWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9671..10019
location: region:9671-10019:1
so has part: feature:9671-10019:1:exon

YP_001654973.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9671-10019:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7959
product: tRNA-Arg
so part of: sequence
location: 10020..10089
location: region:10020-10089:1
so has part: feature:10020-10089:1:region

position:10020:1
position: 10020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10089:1
position: 10089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10020-10089:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 7959
gene: ND4L
so part of: sequence
location: 10090..10386
location: region:10090-10386:1
so has part: feature:10090-10386:1:exon
subclass of: SO_0000010

5857714
type: Gene
SIO_000068: ncbigene

position:10090:1
position: 10090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10386:1
position: 10386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10090-10386:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7959
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MTPVHFSFSSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIALALWALQFESTSFSAAPMLLLAFSACEASTGLALLVATARTHGTDRLQNLNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 10090..10386
location: region:10090-10386:1
so has part: feature:10090-10386:1:exon

YP_001654974.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10090-10386:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 7959
gene: ND4
so part of: sequence
location: 10380..11761
location: region:10380-11761:1
so has part: feature:10380-11761:1:exon
subclass of: SO_0000010

5857717
type: Gene
SIO_000068: ncbigene

position:10380:1
position: 10380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11761:1
position: 11761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10380-11761:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7959
gene: ND4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11760..11761,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKVLIPTIMLFPTIWLTSPKWLWTTTTTHSLLIALISLTWLKWTSETGWTMSNSYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLASLQMFLIMAFGATEIIMFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQQSTGTLSMLVIQYSQPLLLDSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAAVLLKLGGYGMMRMMIMLDPLSKELVYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMFLMTQRGPTPIHITKLPPFHTREHLLMALHLIPVILLVAKPELMWGWCY
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10380..11761
location: region:10380-11761:1
so has part: feature:10380-11761:1:exon

YP_001654975.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10380-11761:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7959
product: tRNA-His
so part of: sequence
location: 11762..11830
location: region:11762-11830:1
so has part: feature:11762-11830:1:region

position:11762:1
position: 11762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11830:1
position: 11830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11762-11830:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7959
product: tRNA-Ser
note: Ser1
codon recognized: AGY
so part of: sequence
location: 11832..11898
location: region:11832-11898:1
so has part: feature:11832-11898:1:region

position:11832:1
position: 11832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11898:1
position: 11898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11832-11898:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7959
product: tRNA-Leu
note: Leu2
codon recognized: CUN
so part of: sequence
location: 11901..11973
location: region:11901-11973:1
so has part: feature:11901-11973:1:region

position:11901:1
position: 11901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11973:1
position: 11973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11901-11973:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 7959
gene: ND5
so part of: sequence
location: 11974..13809
location: region:11974-13809:1
so has part: feature:11974-13809:1:exon
subclass of: SO_0000010

5857716
type: Gene
SIO_000068: ncbigene

position:11974:1
position: 11974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13809:1
position: 13809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11974-13809:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7959
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MNSTTLIMSSSFILVLTILMFPLLTTLNPKPQKPEWAGTHVKTAVSTAFFISLLPLMIFLDQGMESITTNWHWMNTHMFDTNISFKFDHYSLIFTPIALYVTWSILEFALWYMHSDPNMNRFFKYLLLFLVAMITLVTANNMFQLFIGWEGVGIMSFLLIGWWYGRADANTAALQAVIYNRVGDIGLILSMAWFAMNLNSWEIQQIFFLSKNFDMTIPLIGLILAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRLHPLMENNNLALTICLCLGALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLHNLMPATSTYLTIGSLALTGTPFLAGFFSKDAIIEALNTSYLNAWALTLTLIATSFTAVYSFRVVFFVTMGSPRFLPLSPINENNPLVINPIKRLAWGSIIAGLIITSNFLPSKTPIMTMPTTLKLAALMVTIAGLLVAMELTAMTNKQIKITPTIPMHHFSNMLGYFPAVIHRLPPKLNLILGQSIATKFDQTWLEITGPKGLTLTQMTMSKITSDIQRGMIKTYLTIFLLTLTLAILLTLI
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11974..13809
location: region:11974-13809:1
so has part: feature:11974-13809:1:exon

YP_001654976.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11974-13809:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 7959
gene: ND6
so part of: sequence
location: complement(13806..14327)
location: region:13806-14327:-1
so has part: feature:13806-14327:-1:exon
subclass of: SO_0000010

5857706
type: Gene
SIO_000068: ncbigene

position:13806:-1
position: 13806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14327:-1
position: 14327
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13806-14327:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7959
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MTYFMFLLLMALVVGLIAVASNPTPYFAALGLVVAAGVGCGILVGYGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPFPEAWGSRSVVGYVLVYLLGVVLAAGLFWGGWYEGSWMVVDGLKEFSMLRGDVSGVAVMYSFGGAMLVICAWVLLLTLLVVLELTRGLSRGTLRAV
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13806..14327)
location: region:13806-14327:-1
so has part: feature:13806-14327:-1:exon

YP_001654977.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13806-14327:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7959
product: tRNA-Glu
so part of: sequence
location: complement(14328..14395)
location: region:14328-14395:-1
so has part: feature:14328-14395:-1:region

position:14328:-1
position: 14328
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14395:-1
position: 14395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14328-14395:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 7959
gene: CYTB
so part of: sequence
location: 14400..15534
location: region:14400-15534:1
so has part: feature:14400-15534:1:exon
subclass of: SO_0000010

5857712
type: Gene
SIO_000068: ncbigene

position:14400:1
position: 14400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15534:1
position: 15534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14400-15534:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7959
gene: CYTB
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:15534,aa:TERM)
transl table: 2
product: cytochrome b
translation: MASLRKTHPLMKIANDALVDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWLIRNLHANGASFFFICIYMHIARGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFIVAAATLLHLLFLHETGSNNPIGLNSDADKISFHPYFSYKDLLGFVMMLLALTSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPITQFLFWTLVADMIILTWIGGMPVEHPYVIIGQIASVLYFALFLILTPLAGWLENKALK
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14400..15534
location: region:14400-15534:1
so has part: feature:14400-15534:1:exon

YP_001654978.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14400-15534:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7959
product: tRNA-Thr
so part of: sequence
location: 15541..15612
location: region:15541-15612:1
so has part: feature:15541-15612:1:region

position:15541:1
position: 15541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15612:1
position: 15612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15541-15612:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7959
product: tRNA-Pro
so part of: sequence
location: complement(15612..15681)
location: region:15612-15681:-1
so has part: feature:15612-15681:-1:region

position:15612:-1
position: 15612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15681:-1
position: 15681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15612-15681:-1:region

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 7959
note: control region
so part of: sequence
location: 15682..16609
location: region:15682-16609:1
so has part: feature:15682-16609:1:region

position:15682:1
position: 15682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15682-16609:1:region