Halalkalicoccus jeotgali B3 plasmid 6, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Halococcaceae; Halalkalicoccus.
Complete genome sequence of Halalkalicoccus jeotgali B3(T), an extremely halophilic archaeon
Submitted (07-JUN-2010) Department of Biology, Kyung Hee University, HoeGi-Dong 1, DongDaeMun-Gu, Seoul 130-701, Republic of Korea, Seoul, Seoul 130-701, Republic of Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP002068.1.\nThis archaeon was isolated in our laboratory, followed by\ndepositing this isolate into four culture collections (see the ref,\nIJSEM 2007, 57(10):2296-2298).\nGenome was manually curated based on annotation generated by the\nNCBI Prokaryotic Genomes Automatic Annotation Pipeline Group.\nInformation about the Pipeline can be found here:\nhttp://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/30/2023 10:28:19\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,920\nCDSs (total) :: 3,866\nGenes (coding) :: 3,795\nCDSs (with protein) :: 3,795\nGenes (RNA) :: 54\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 2\nPseudo Genes (total) :: 71\nCDSs (without protein) :: 71\nPseudo Genes (ambiguous residues) :: 1 of 71\nPseudo Genes (frameshifted) :: 24 of 71\nPseudo Genes (incomplete) :: 50 of 71\nPseudo Genes (internal stop) :: 9 of 71\nPseudo Genes (multiple problems) :: 10 of 71\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008419263.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013199710.1
COORDINATES: similar to AA sequence:RefSeq:WP_008415473.1
COORDINATES: similar to AA sequence:RefSeq:WP_008419265.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008419264.1