Halalkalicoccus jeotgali B3 plasmid 5, complete sequence.
type: Entry
definition: Halalkalicoccus jeotgali B3 plasmid 5, complete sequence.
sequence version: NC_014302.1
sequence date: 2023-07-30
sequence: sequence
division: CON
label: NC_014302.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02603490
keyword: RefSeq
source: Halalkalicoccus jeotgali B3
organism: Halalkalicoccus jeotgali B3
taxonomy: Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Halococcaceae; Halalkalicoccus.
reference: 1
references: 20601480
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP002067.1.\nThis archaeon was isolated in our laboratory, followed by\ndepositing this isolate into four culture collections (see the ref,\nIJSEM 2007, 57(10):2296-2298).\nGenome was manually curated based on annotation generated by the\nNCBI Prokaryotic Genomes Automatic Annotation Pipeline Group.\nInformation about the Pipeline can be found here:\nhttp://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/30/2023 10:28:19\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,920\nCDSs (total) :: 3,866\nGenes (coding) :: 3,795\nCDSs (with protein) :: 3,795\nGenes (RNA) :: 54\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 2\nPseudo Genes (total) :: 71\nCDSs (without protein) :: 71\nPseudo Genes (ambiguous residues) :: 1 of 71\nPseudo Genes (frameshifted) :: 24 of 71\nPseudo Genes (incomplete) :: 50 of 71\nPseudo Genes (internal stop) :: 9 of 71\nPseudo Genes (multiple problems) :: 10 of 71\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 23727
topology: circular
so has quality: SO_0000988
location: 1..23727
location: region:1-23727:1
RO_0002162: 795797

NC_014302
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02603490
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence of Halalkalicoccus jeotgali B3(T), an extremely halophilic archaeon
author: Roh, S.W.
author: Nam, Y.D.
author: Nam, S.H.
author: Choi, S.H.
author: Park, H.S.
author: Bae, J.W.
journal: J Bacteriol
volume: 192
issue: 17
pages: 4528-4529
year: 2010
pubmed: 20601480

20601480
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Roh, S.W.
author: Nam, Y.-D.
author: Nam, S.-H.
author: Choi, S.-H.
author: Park, H.-S.
author: Bae, J.-W.
journal: Submitted (07-JUN-2010) Department of Biology, Kyung Hee University, HoeGi-Dong 1, DongDaeMun-Gu, Seoul 130-701, Republic of Korea, Seoul, Seoul 130-701, Republic of Korea

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23727:1
position: 23727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-23727:1:source
so part of: sequence
organism: Halalkalicoccus jeotgali B3
mol type: genomic DNA
strain: B3
culture collection: CECT:7217
culture collection: DSM:DSM 18796
culture collection: JCM:14584
culture collection: KCTC:4019
type material: type strain of Halalkalicoccus jeotgali
plasmid: 5
note: type strain of Halalkalicoccus jeotgali

795797
type: Taxonomy
SIO_000068: taxonomy

HACJB3_RS18470
type: Gene
subclass of: SO_0000704
RO_0002162: 795797
locus tag: HACJB3_RS18470
old locus tag: HacjB3_19498
so part of: sequence
location: complement(1057..1755)
location: region:1057-1755:-1
so has part: feature:1057-1755:-1:exon
subclass of: SO_0000010

9385826
type: Gene
SIO_000068: ncbigene

position:1057:-1
position: 1057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1755:-1
position: 1755
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1057-1755:-1:exon

HACJB3_RS18470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 795797
locus tag: HACJB3_RS18470
old locus tag: HacjB3_19498
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008413539.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MATEFELNIAMNIIQLTGISLPVLLGILAYYGKHIGGEPDEITPLTDDLSLDSKEATRALYLIFFSVWVLLGSAYFLSFMVLATHFHIVHPIILALSAYGLFIAILSFSVPIVLGTPLRGHFHRMLALLLALLFSMFSILFSLILFIFIANTIPIPQSLEDLYIFSFISINALAIVIFVMLAVLVPWENYSSRGEIAWLFYFRSVKESIRSGNFFLRSDGDSTDKTDIPYYQ
SIO_010081: HACJB3_RS18470
subclass of: SO_0000673
so part of: HACJB3_RS18470
location: complement(1057..1755)
location: region:1057-1755:-1
so has part: feature:1057-1755:-1:exon

WP_238532972.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1057-1755:-1:exon

HACJB3_RS18475
type: Gene
subclass of: SO_0000704
RO_0002162: 795797
locus tag: HACJB3_RS18475
old locus tag: HacjB3_19503
so part of: sequence
location: complement(1778..1963)
location: region:1778-1963:-1
so has part: feature:1778-1963:-1:exon
subclass of: SO_0000010

9385803
type: Gene
SIO_000068: ncbigene

position:1778:-1
position: 1778
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1963:-1
position: 1963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1778-1963:-1:exon

HACJB3_RS18475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 795797
locus tag: HACJB3_RS18475
old locus tag: HacjB3_19503
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008413541.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPAENDPPTDAPRDLAEDIHQFLKDIDEPQAVYEKMQVGEFDEAFEKTTEECPYERTHMLI
SIO_010081: HACJB3_RS18475
subclass of: SO_0000673
so part of: HACJB3_RS18475
location: complement(1778..1963)
location: region:1778-1963:-1
so has part: feature:1778-1963:-1:exon

WP_008413541.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1778-1963:-1:exon

HACJB3_RS18480
type: Gene
subclass of: SO_0000704
RO_0002162: 795797
locus tag: HACJB3_RS18480
old locus tag: HacjB3_19508
so part of: sequence
location: 2301..2843
location: region:2301-2843:1
so has part: feature:2301-2843:1:exon
subclass of: SO_0000010

9385804
type: Gene
SIO_000068: ncbigene

position:2301:1
position: 2301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2843:1
position: 2843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2301-2843:1:exon

HACJB3_RS18480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 795797
locus tag: HACJB3_RS18480
old locus tag: HacjB3_19508
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008413543.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sigma-70 family RNA polymerase sigma factor
translation: MPTASPLQHQRELDELPLYLPEQNAVLVGRIIDDESEMAGMAAYYVHWRGGVYIGNYNEADNAFTSHYSTKLEERMMSHQVKAFDDMEVEKELSSIGEALLDAYDFAETQAMADKQAHVFALQSMNGFTRSQTANILNVSPSTVDSQRASATKKADAAVAFTATYTEKKENPDNEDLLKH
SIO_010081: HACJB3_RS18480
subclass of: SO_0000673
so part of: HACJB3_RS18480
location: 2301..2843
location: region:2301-2843:1
so has part: feature:2301-2843:1:exon

WP_008413543.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2301-2843:1:exon

HACJB3_RS20510
type: Gene
subclass of: SO_0000704
RO_0002162: 795797
locus tag: HACJB3_RS20510
so part of: sequence
location: 2871..3620
location: region:2871-3620:1
so has part: feature:2871-3620:1:exon
subclass of: SO_0000010

55564122
type: Gene
SIO_000068: ncbigene

position:2871:1
position: 2871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3620:1
position: 3620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2871-3620:1:exon

HACJB3_RS20510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 795797
locus tag: HACJB3_RS20510
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MYISDHRCSRISEVEGFERLGSKTSPFTIRAGEEKKEEAEEIHTSRPQEEQEEDETSNEPIELDLGDWENDIDTLDFPETDTIPHKKLLNRAKNAEEEAKDNLFLNTVVRHTDFNEPGKLGHFLPPSRKIELDTLEDNFPAYQTAPVLAHEIGHAFHIGVSRSDEKPGFESGTDSVFETEAQRQDAIDISERMRGDIPDNNEEARDYRLEEEELFADVFASFIIEHEAARRAGPQAVARVESYLSGHLP
SIO_010081: HACJB3_RS20510
subclass of: SO_0000673
so part of: HACJB3_RS20510
location: 2871..3620
location: region:2871-3620:1
so has part: feature:2871-3620:1:exon

WP_174264877.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2871-3620:1:exon

HACJB3_RS18485
type: Gene
subclass of: SO_0000704
RO_0002162: 795797
locus tag: HACJB3_RS18485
old locus tag: HacjB3_19518
so part of: sequence
location: 4051..5076
location: region:4051-5076:1
so has part: feature:4051-5076:1:exon
subclass of: SO_0000010

9385806
type: Gene
SIO_000068: ncbigene

position:4051:1
position: 4051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5076:1
position: 5076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4051-5076:1:exon

HACJB3_RS18485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 795797
locus tag: HACJB3_RS18485
old locus tag: HacjB3_19518
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008413546.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKIAAEWVQFEIPYLLQVEDSFEGNESARFHSRVRGVPAELQFKKEAREGEEGERPGMMFGQVEGDRLGNVSYTKVRVGFNRQLLDALPDELNGDFEALKEGSPTKWLKNLDGREGRIIRAAVDQVNQFLEVYRASLGYYWIRGVSPSEVVYFMRTTVSKNEDTYDHGTMYPGSALTPGTSTIDEKAHDTIEARLDTEHKVPITISLRLDAQDKLDLGEYRLAVITAGTMFEAFLKDGLKDLMAAQGMSDDEIESVFVDDGDYTSITTLAKETVPKTIHFDFKETDQFEAWDEETRKMRNRVVHEGYVPSEDEARAAYEAAADAVEFLTDKMVERHEELSN
SIO_010081: HACJB3_RS18485
subclass of: SO_0000673
so part of: HACJB3_RS18485
location: 4051..5076
location: region:4051-5076:1
so has part: feature:4051-5076:1:exon

WP_008413546.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4051-5076:1:exon

HACJB3_RS18490
type: Gene
subclass of: SO_0000704
RO_0002162: 795797
locus tag: HACJB3_RS18490
old locus tag: HacjB3_19523
so part of: sequence
location: 5760..6575
location: region:5760-6575:1
so has part: feature:5760-6575:1:exon
subclass of: SO_0000010

9385807
type: Gene
SIO_000068: ncbigene

position:5760:1
position: 5760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6575:1
position: 6575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5760-6575:1:exon

HACJB3_RS18490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 795797
locus tag: HACJB3_RS18490
old locus tag: HacjB3_19523
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: DUF2971 domain-containing protein
translation: MAEEESEFWSPTVPSDDTPIWRYRDLSQFLSILEKQSLWFNRADLFSDPFEGSFAKANVETRQFRYAQTEIPNDVLETMSVMAKKFRKTTYLNCWHINTHESAAMWDLYLPADKGIAIRSTVGRFREAINESDNDAKIEIDTDDDEVEELDAIMKIGKVNYIDYSSKLIPESNSFAPLYHKRKSYEHENEFRASFSKFGDMLELQGGLRPDADFATAPGHNVEVDLSKLIESVYVAPSAPNWFFEVLESVTDRYDIDIQIQQSDLDDDPVF
SIO_010081: HACJB3_RS18490
subclass of: SO_0000673
so part of: HACJB3_RS18490
location: 5760..6575
location: region:5760-6575:1
so has part: feature:5760-6575:1:exon

WP_013199705.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5760-6575:1:exon

HACJB3_RS18500
type: Gene
subclass of: SO_0000704
RO_0002162: 795797
locus tag: HACJB3_RS18500
old locus tag: HacjB3_19528
so part of: sequence
location: complement(7227..9017)
location: region:7227-9017:-1
so has part: feature:7227-9017:-1:exon
subclass of: SO_0000010

9385808
type: Gene
SIO_000068: ncbigene

position:7227:-1
position: 7227
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9017:-1
position: 9017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7227-9017:-1:exon

HACJB3_RS18500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 795797
locus tag: HACJB3_RS18500
old locus tag: HacjB3_19528
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008413549.1
GO function: GO:0003896 - DNA primase activity [Evidence IEA]
GO process: GO:0006260 - DNA replication [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phage/plasmid primase, P4 family
translation: MTDYSFSAEYKDSLFDESGNLTYNNSRFKGEPVDLSEDSEGEENDDDDGTMTFATNTEDIDDNESETEKSDEKLFQRRLERKERIDKQKKSHRTENKPHDSHDKTSLEPDSDSWSEILAMYENDDFGDTKKADYRAAEKLVEEYHIKTLESSEEVFWYDESEGTYKENGGKKVDKVLNDRLKWLCDNRTKGEVKSRLQSMSWVMEDTVFNPPEGFICVKNGVLNLTDPDNPELEDHSPEYGFRKNMDTPYIEGAENQLFVDSLEETVQDKDLEKLQEYTGIALEDWEQPTKMAVLIGPQNAGKGTYLHAIESIFGKGNVAAEPIKELADSRWSTNSLKDRPLNIANELSTEKVNHQEAVKTLTGGGDSKRAEDKGDSVYEFIPTSNHLFATNQLPEMPGADGIFYNRFLFVDFPQTVPKEDRDASLDEKMVESEQRRAGILNWLIEGYARIKSRGKTGYTNELSEADKISKWHSYGSSIERFIETCIETDEAVEDDARTKKDLYQTYLRMSKDANLPCKAQATLTGKLKKLPGVREYRGYQENVDNPYFDETARPDSLRGIDFTNIGNEYFWDAVESDTPEMEDMVEGDNQTRESF
SIO_010081: HACJB3_RS18500
subclass of: SO_0000673
so part of: HACJB3_RS18500
location: complement(7227..9017)
location: region:7227-9017:-1
so has part: feature:7227-9017:-1:exon

WP_008413549.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7227-9017:-1:exon

HACJB3_RS18505
type: Gene
subclass of: SO_0000704
RO_0002162: 795797
locus tag: HACJB3_RS18505
old locus tag: HacjB3_19543
so part of: sequence
location: complement(9497..12217)
location: region:9497-12217:-1
so has part: feature:9497-12217:-1:exon
subclass of: SO_0000010

9385811
type: Gene
SIO_000068: ncbigene

position:9497:-1
position: 9497
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12217:-1
position: 12217
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9497-12217:-1:exon

HACJB3_RS18505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 795797
locus tag: HACJB3_RS18505
old locus tag: HacjB3_19543
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MHRTSRTNENFTEDGLETITGQSPSHWGVYCLKELIDNSLEASDGVSITVEVETEENSHRNPYVTEIGVYDDGPGIDEGTIHDIFGDIDYFVGSKRHYALPTRGNQGNALMSILGIQHVINGDKPLVIHSQKQRYTIDTRKEFGQYHVEITKDGPSDVSGFGVTVEFGNSSSYDGLEIVNNHPIRRDKVRKAFRRLVLLNPQCDFELIIDGESETYPAIPSPTVTSATQKELATWFSFNGFIERYQADRDVDPDMTLRDFVSQFHGLKTKADEIVEDIDNSEITEDVLKRVYEDACELTTERSESGLDETIGSIGTDLETRLHAYVGDGPETIVEQIDREGYDDIDDITVYYQAGGSYDEGNKTVPFCFELAAVPTWITGKNERAGSKHILGINQSVLYDGGFVHLHSPLSEGASSFDTSFNGNHQYVVVANIYCPNVGFRDKGKQGFNSEPFERVISEVVGKAKRKIERDIRPRLNDLREEEQEETLSGKAPNGFIKDFVWDNFWDVYNDATDNGTYSIEMRQLYYKFRPLFLDEAEKRGYQYSTKATVDDPKPLELNFDTFSDYISEFEEEELGERLIIRDERGFFVEPHTNQRINLGTTAVRQYDPSDVDYGDILFIEKTGFMDILHREFELTKKYDIGLINSKGWNTTAGQKLVEKIQTANPDATLYVLSDLDIAGVGIADNVSSPDELSDLDELATEKIGVTCDDVHEYGLPAEKGEYKDKTLSQLETMHDDGIVDDETYEYLGEDNRVEINAFSPVELKEYLETKFEDHDITKQYPSPSVINEPDLPDSTETRSTAIEQALGRWVMAQIPDDMVERIEDSVTVDDALTGQLEDLETDPKSLTEEIHEELADNPPRHWSDMNEELVEKREKEAEEASEDYIETVSESTKEYLDENHTVEFE
SIO_010081: HACJB3_RS18505
subclass of: SO_0000673
so part of: HACJB3_RS18505
location: complement(9497..12217)
location: region:9497-12217:-1
so has part: feature:9497-12217:-1:exon

WP_238532973.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9497-12217:-1:exon

HACJB3_RS19880
type: Gene
subclass of: SO_0000704
RO_0002162: 795797
locus tag: HACJB3_RS19880
so part of: sequence
location: 13549..13878
location: region:13549-13878:1
so has part: feature:13549-13878:1:exon
subclass of: SO_0000010

41371882
type: Gene
SIO_000068: ncbigene

position:13549:1
position: 13549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13878:1
position: 13878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13549-13878:1:exon

HACJB3_RS19880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 795797
locus tag: HACJB3_RS19880
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKDKKEYEKEYDYEFEYEGEKVQVGAHTVIADSGVVNQYVQWKTGEWNGEYGYVESGRVIGPYLVFGEDPQNYPTNIHNGTADSIEIPEDIFKQLVGDHEKQLYDLRRE
SIO_010081: HACJB3_RS19880
subclass of: SO_0000673
so part of: HACJB3_RS19880
location: 13549..13878
location: region:13549-13878:1
so has part: feature:13549-13878:1:exon

WP_049946425.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13549-13878:1:exon

HACJB3_RS19885
type: Gene
subclass of: SO_0000704
RO_0002162: 795797
locus tag: HACJB3_RS19885
so part of: sequence
location: 14319..14522
location: region:14319-14522:1
so has part: feature:14319-14522:1:exon
subclass of: SO_0000010

41371883
type: Gene
SIO_000068: ncbigene

position:14319:1
position: 14319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14522:1
position: 14522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14319-14522:1:exon

HACJB3_RS19885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 795797
locus tag: HACJB3_RS19885
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVEVGYGFTPMPSSRNGELMILIHGQVATIVLLSPVIPLGTTIEGGKRNLSQIVSGYMRIRSLYPRF
SIO_010081: HACJB3_RS19885
subclass of: SO_0000673
so part of: HACJB3_RS19885
location: 14319..14522
location: region:14319-14522:1
so has part: feature:14319-14522:1:exon

WP_148258291.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14319-14522:1:exon

HACJB3_RS18515
type: Gene
subclass of: SO_0000704
RO_0002162: 795797
locus tag: HACJB3_RS18515
old locus tag: HacjB3_19558
so part of: sequence
location: 14874..15950
location: region:14874-15950:1
so has part: feature:14874-15950:1:exon
subclass of: SO_0000010

9385814
type: Gene
SIO_000068: ncbigene

position:14874:1
position: 14874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15950:1
position: 15950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14874-15950:1:exon

HACJB3_RS18515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 795797
locus tag: HACJB3_RS18515
old locus tag: HacjB3_19558
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008413556.1
GO function: GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
GO process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: polysaccharide deacetylase family protein
translation: MKGRRPTRRGVLQNVFGIGLFSWFISKIKQLFGVQSDSGRKSPEEMTTENKPLHADQEQAKEPKEEEEDPQPTLPENGAIVFVYDDGAMEDYTQALPAHKAFDAPATTGIVSEWVGTSGYMDTEELDELVEAGWEIASHTKEHRPLASFPLTEDTNHSDTIVSAEGYRHGHHEGETVEITDGETKVLREIAGLAGEPGERRVKLTEPVDEHFHAGETEIHYPAAVMHEAVDDSKKALEEMGYDVSTILAPYDVYSGYSNLFVKEQYDGVANAEHGSRINHPDEYDPYETQRDYFIEFTDKKSVKHDLDKIADDALLGVVGAHSFKDEVNEESIQEMLEWVEERDIETMTLREAIETYD
SIO_010081: HACJB3_RS18515
subclass of: SO_0000673
so part of: HACJB3_RS18515
location: 14874..15950
location: region:14874-15950:1
so has part: feature:14874-15950:1:exon

WP_008413556.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14874-15950:1:exon

HACJB3_RS19465
type: Gene
subclass of: SO_0000704
RO_0002162: 795797
locus tag: HACJB3_RS19465
old locus tag: HacjB3_19563
so part of: sequence
location: complement(16042..16443)
location: region:16042-16443:-1
so has part: feature:16042-16443:-1:exon
subclass of: SO_0000010

31807796
type: Gene
SIO_000068: ncbigene

position:16042:-1
position: 16042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16443:-1
position: 16443
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16042-16443:-1:exon

HACJB3_RS19465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 795797
locus tag: HACJB3_RS19465
old locus tag: HacjB3_19563
inference: COORDINATES: protein motif:HMM:NF016330.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SWIM zinc finger family protein
translation: MQNTSPTAKSDLVGQANEKTLKRAQWESFSFELEAPGLVRVTNDSYDEDGHSYTVNVETDVPVACECKAFEYQDGPCKHMVAVAIREPVLMAAQAVPIPDGGQAKNTCQNGQTGCCGPHGDELPCFDCYQDRR
SIO_010081: HACJB3_RS19465
subclass of: SO_0000673
so part of: HACJB3_RS19465
location: complement(16042..16443)
location: region:16042-16443:-1
so has part: feature:16042-16443:-1:exon

WP_238532970.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16042-16443:-1:exon

HACJB3_RS18520
type: Gene
subclass of: SO_0000704
RO_0002162: 795797
locus tag: HACJB3_RS18520
old locus tag: HacjB3_19568
so part of: sequence
location: 16618..16875
location: region:16618-16875:1
so has part: feature:16618-16875:1:exon
subclass of: SO_0000010

9385816
type: Gene
SIO_000068: ncbigene

position:16618:1
position: 16618
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16875:1
position: 16875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16618-16875:1:exon

HACJB3_RS18520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 795797
locus tag: HACJB3_RS18520
old locus tag: HacjB3_19568
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008413558.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNEKKEYMSNAGRKPRVTDDELIDTIRQLTDTNENIVVTTPEITDELPIAQRSVYDRLIKLNDEERVQKKKVGARAIVWWVNADE
SIO_010081: HACJB3_RS18520
subclass of: SO_0000673
so part of: HACJB3_RS18520
location: 16618..16875
location: region:16618-16875:1
so has part: feature:16618-16875:1:exon

WP_008413558.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16618-16875:1:exon

HACJB3_RS18525
type: Gene
subclass of: SO_0000704
RO_0002162: 795797
locus tag: HACJB3_RS18525
old locus tag: HacjB3_19573
so part of: sequence
location: complement(17292..18176)
location: region:17292-18176:-1
so has part: feature:17292-18176:-1:exon
subclass of: SO_0000010

9385817
type: Gene
SIO_000068: ncbigene

position:17292:-1
position: 17292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18176:-1
position: 18176
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17292-18176:-1:exon

HACJB3_RS18525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 795797
locus tag: HACJB3_RS18525
old locus tag: HacjB3_19573
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTATVEQLQTEYDSIWEAVAEERRAREKLETENEELRAELEKQDEQIEQNAEHIEQVDAKAENNNDGWSLDHRPTSETEHLDALWLTHTEEEIPDQPLGRIVNGARSKADSNATEIRDIALDRIDPDDYLERTGGMDPNEMIDLHRHHQVQKGDSIADGPFSNEANTARAALLFPRLREMSRGLQGGAREICAKDLADEIRRSFANDPERKAELADPAENANTAQRILRRCARFGGDLMHFDVAENRLLIDADEWREYSRKSQQAFDGETDPDAENVIGGGDTESYSVVNNDQR
SIO_010081: HACJB3_RS18525
subclass of: SO_0000673
so part of: HACJB3_RS18525
location: complement(17292..18176)
location: region:17292-18176:-1
so has part: feature:17292-18176:-1:exon

WP_013199706.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17292-18176:-1:exon

HACJB3_RS18530
type: Gene
subclass of: SO_0000704
RO_0002162: 795797
locus tag: HACJB3_RS18530
old locus tag: HacjB3_19578
so part of: sequence
location: complement(18173..18409)
location: region:18173-18409:-1
so has part: feature:18173-18409:-1:exon
subclass of: SO_0000010

9385818
type: Gene
SIO_000068: ncbigene

position:18173:-1
position: 18173
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18409:-1
position: 18409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18173-18409:-1:exon

HACJB3_RS18530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 795797
locus tag: HACJB3_RS18530
old locus tag: HacjB3_19578
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008413525.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSHTSDITSGDGTDTGETIEAQQQAIDDLQKRIEELEKAVQTRTERYTILRDIVTKKTDLDSETIDELVERQLESDDR
SIO_010081: HACJB3_RS18530
subclass of: SO_0000673
so part of: HACJB3_RS18530
location: complement(18173..18409)
location: region:18173-18409:-1
so has part: feature:18173-18409:-1:exon

WP_008413525.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18173-18409:-1:exon

HACJB3_RS18535
type: Gene
subclass of: SO_0000704
RO_0002162: 795797
locus tag: HACJB3_RS18535
old locus tag: HacjB3_19583
so part of: sequence
location: 18704..19048
location: region:18704-19048:1
so has part: feature:18704-19048:1:exon
subclass of: SO_0000010

9385819
type: Gene
SIO_000068: ncbigene

position:18704:1
position: 18704
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19048:1
position: 19048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18704-19048:1:exon

HACJB3_RS18535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 795797
locus tag: HACJB3_RS18535
old locus tag: HacjB3_19583
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRQMTVSLREEQARWVESKVGDSSDHQSKSAVIRFIIDDHQDRNEELVELQRKREELENKVQRLQNEKKLILQQREEHTELVESIQREQTMAERKNKAGVATRFKWWLTGMPDE
SIO_010081: HACJB3_RS18535
subclass of: SO_0000673
so part of: HACJB3_RS18535
location: 18704..19048
location: region:18704-19048:1
so has part: feature:18704-19048:1:exon

WP_013199707.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18704-19048:1:exon

HACJB3_RS19470
type: Gene
subclass of: SO_0000704
RO_0002162: 795797
locus tag: HACJB3_RS19470
old locus tag: HacjB3_19588
so part of: sequence
location: complement(19600..20040)
location: region:19600-20040:-1
so has part: feature:19600-20040:-1:exon
subclass of: SO_0000010

31807797
type: Gene
SIO_000068: ncbigene

position:19600:-1
position: 19600
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20040:-1
position: 20040
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19600-20040:-1:exon

HACJB3_RS19470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 795797
locus tag: HACJB3_RS19470
old locus tag: HacjB3_19588
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008413529.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVVTTVREELQQGYNAGYEFLGDALDLIVSDKPDDEYDIRDNTVIHLKRIHSSREKIDSNLDPGEADSLYHALINGRVLATDDRDARQLARELDVPVTGSLGILVRGIKQDKITVSTANEWLSEWQDAGYHSPVDDMRELSDKYTE
SIO_010081: HACJB3_RS19470
subclass of: SO_0000673
so part of: HACJB3_RS19470
location: complement(19600..20040)
location: region:19600-20040:-1
so has part: feature:19600-20040:-1:exon

WP_238532971.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19600-20040:-1:exon

HACJB3_RS19475
type: Gene
subclass of: SO_0000704
RO_0002162: 795797
locus tag: HACJB3_RS19475
old locus tag: HacjB3_19593
so part of: sequence
location: complement(20142..20369)
location: region:20142-20369:-1
so has part: feature:20142-20369:-1:exon
subclass of: SO_0000010

31807798
type: Gene
SIO_000068: ncbigene

position:20142:-1
position: 20142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20369:-1
position: 20369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20142-20369:-1:exon

HACJB3_RS19475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 795797
locus tag: HACJB3_RS19475
old locus tag: HacjB3_19593
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008413530.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: UPF0175 family protein
translation: MCPSSLETAGKDKDLATIIGLYVLEELTLGQAAERLEISRFEMREILHEGGVELRLGPKDIDDASSEIDVALNLE
SIO_010081: HACJB3_RS19475
subclass of: SO_0000673
so part of: HACJB3_RS19475
location: complement(20142..20369)
location: region:20142-20369:-1
so has part: feature:20142-20369:-1:exon

WP_008413530.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20142-20369:-1:exon

HACJB3_RS19480
type: Gene
subclass of: SO_0000704
RO_0002162: 795797
locus tag: HACJB3_RS19480
so part of: sequence
location: complement(20959..22527)
location: region:20959-22527:-1
so has part: feature:20959-22527:-1:exon
subclass of: SO_0000010

31807799
type: Gene
SIO_000068: ncbigene

position:20959:-1
position: 20959
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22527:-1
position: 22527
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20959-22527:-1:exon

HACJB3_RS19480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 795797
locus tag: HACJB3_RS19480
inference: COORDINATES: protein motif:HMM:NF019500.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: pentapeptide repeat-containing protein
translation: MAEMGGIPDDRCGYNLLEDGTADFPVGDCAQDILENFHLQQDGSACCWRETWKDTDQCIWHARVEDKPLKKLKAARTNNPEQLDGAYLVGVEIASSISFHGCGLRAAIFKDVTLPRAGFHDASLRHAQFHHVELPEAEFHNADLSYARFQHVELPESDFYNAELLLTEFDNVVLLLAKFRNASLPRVDFYDSRLTFAEFYDAKLFNAQFRSTNLYRAKFQGANFSGEDPPIHSLGGTDHSSAKFHDSDLLHADFRGTQLSNVVFCHSDISGGDYTDADARDADFSHATLHNALFTRTDCRGATFTNALLYETVFADARINSQTTFYDSGVSRPVVVYEKNPHALEGLSMDTHPLEAAEWVYRRLEKLHDENALSEEARKFHISKQEVRRKYQYELEDYPQYAISTLQWHVNGHGESIFRIFRSAAILILACGILYPFVGGIGSSSTGTVYSIPLTLSRIASLDGAATLLQGIYFSVITFTTIGYGDLYPIGVGSKVLVGFESLSGAILIALFVFVLGRRVAR
SIO_010081: HACJB3_RS19480
subclass of: SO_0000673
so part of: HACJB3_RS19480
location: complement(20959..22527)
location: region:20959-22527:-1
so has part: feature:20959-22527:-1:exon

WP_081461395.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20959-22527:-1:exon

HACJB3_RS18550
type: Gene
subclass of: SO_0000704
RO_0002162: 795797
locus tag: HACJB3_RS18550
old locus tag: HacjB3_19608
so part of: sequence
location: complement(22584..22793)
location: region:22584-22793:-1
so has part: feature:22584-22793:-1:exon
subclass of: SO_0000010

9385824
type: Gene
SIO_000068: ncbigene

position:22584:-1
position: 22584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22793:-1
position: 22793
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22584-22793:-1:exon

HACJB3_RS18550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 795797
locus tag: HACJB3_RS18550
old locus tag: HacjB3_19608
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008413536.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDDTARDLAKDIHQFLNDVDNPQAVYNKMQAGEFDEAFAMMGLTRNQAESIARSWHTRIRTILRQTVRD
SIO_010081: HACJB3_RS18550
subclass of: SO_0000673
so part of: HACJB3_RS18550
location: complement(22584..22793)
location: region:22584-22793:-1
so has part: feature:22584-22793:-1:exon

WP_008413536.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22584-22793:-1:exon

HACJB3_RS20035
type: Gene
subclass of: SO_0000704
RO_0002162: 795797
locus tag: HACJB3_RS20035
so part of: sequence
location: complement(23146..23562)
location: region:23146-23562:-1
so has part: feature:23146-23562:-1:exon
subclass of: SO_0000010

43870119
type: Gene
SIO_000068: ncbigene

position:23146:-1
position: 23146
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23562:-1
position: 23562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23146-23562:-1:exon

HACJB3_RS20035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 795797
locus tag: HACJB3_RS20035
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPISTDSEVWKQGEESTRLHKRVLAFLRDHPNQAYRQGEIADEVLNTTFAIGEERERIQAELTDEEYNDRYHEDDLPGGGDHYPLANTIVLQKISSVLGKLRDYDLIAARKVDAEPFDLPETETVIVYTYDEDVDYQK
SIO_010081: HACJB3_RS20035
subclass of: SO_0000673
so part of: HACJB3_RS20035
location: complement(23146..23562)
location: region:23146-23562:-1
so has part: feature:23146-23562:-1:exon

WP_162148002.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23146-23562:-1:exon