Halalkalicoccus jeotgali B3 plasmid 3, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Halococcaceae; Halalkalicoccus.
Complete genome sequence of Halalkalicoccus jeotgali B3(T), an extremely halophilic archaeon
Submitted (07-JUN-2010) Department of Biology, Kyung Hee University, HoeGi-Dong 1, DongDaeMun-Gu, Seoul 130-701, Republic of Korea, Seoul, Seoul 130-701, Republic of Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP002065.1.\nThis archaeon was isolated in our laboratory, followed by\ndepositing this isolate into four culture collections (see the ref,\nIJSEM 2007, 57(10):2296-2298).\nGenome was manually curated based on annotation generated by the\nNCBI Prokaryotic Genomes Automatic Annotation Pipeline Group.\nInformation about the Pipeline can be found here:\nhttp://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/30/2023 10:28:19\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,920\nCDSs (total) :: 3,866\nGenes (coding) :: 3,795\nCDSs (with protein) :: 3,795\nGenes (RNA) :: 54\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 2\nPseudo Genes (total) :: 71\nCDSs (without protein) :: 71\nPseudo Genes (ambiguous residues) :: 1 of 71\nPseudo Genes (frameshifted) :: 24 of 71\nPseudo Genes (incomplete) :: 50 of 71\nPseudo Genes (internal stop) :: 9 of 71\nPseudo Genes (multiple problems) :: 10 of 71\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008414057.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - DNA transposition [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008414056.1
GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006076832.1
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008414054.1
COORDINATES: similar to AA sequence:RefSeq:WP_013199548.1
COORDINATES: protein motif:HMM:NF013003.2
COORDINATES: similar to AA sequence:RefSeq:WP_008414051.1
GO:0005267 - potassium channel activity [Evidence IEA]
GO:0034220 - monoatomic ion transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF014005.2
COORDINATES: similar to AA sequence:RefSeq:WP_007741536.1
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006076826.1
GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]; GO:0043682 - P-type divalent copper transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007980757.1
COORDINATES: similar to AA sequence:RefSeq:WP_008414038.1
COORDINATES: similar to AA sequence:RefSeq:WP_008414037.1
COORDINATES: similar to AA sequence:RefSeq:WP_007275385.1
GO:0046872 - metal ion binding [Evidence IEA]
heavy metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008414032.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143705.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007737928.1
COORDINATES: similar to AA sequence:RefSeq:WP_008414027.1
COORDINATES: similar to AA sequence:RefSeq:WP_004046299.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008414025.1
COORDINATES: similar to AA sequence:RefSeq:WP_008414089.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008414083.1
COORDINATES: similar to AA sequence:RefSeq:WP_008414081.1
COORDINATES: similar to AA sequence:RefSeq:WP_008414080.1
COORDINATES: similar to AA sequence:RefSeq:WP_008414078.1
COORDINATES: similar to AA sequence:RefSeq:WP_008414076.1
COORDINATES: similar to AA sequence:RefSeq:WP_013199699.1
COORDINATES: similar to AA sequence:RefSeq:WP_008414069.1
COORDINATES: similar to AA sequence:RefSeq:WP_013199615.1
COORDINATES: similar to AA sequence:RefSeq:WP_009378065.1
COORDINATES: similar to AA sequence:RefSeq:WP_008414064.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006825398.1
COORDINATES: similar to AA sequence:RefSeq:WP_008414061.1
COORDINATES: similar to AA sequence:RefSeq:WP_008413612.1