Danio rerio mitochondrion, complete genome.
type: Entry
definition: Danio rerio mitochondrion, complete genome.
sequence version: NC_002333.2
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_002333.2
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Danio rerio (zebrafish)
organism: Danio rerio
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio.
reference: 1
references: 11691861
reference: 2
reference: 3
reference: 4
reference: 5
reference: 6
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence was derived from AC024175.\n\nOn Aug 2, 2001 this sequence version replaced NC_002333.1.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16596
topology: circular
so has quality: SO_0000988
location: 1..16596
location: region:1-16596:1
RO_0002162: 7955

NC_002333
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: The complete sequence of the zebrafish (Danio rerio) mitochondrial genome and evolutionary patterns in vertebrate mitochondrial DNA
author: Broughton, R.E.
author: Milam, J.E.
author: Roe, B.A.
journal: Genome Res.
volume: 11
issue: 11
pages: 1958-1967
year: 2001
pubmed: 11691861

11691861
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Milam, J.E.
author: Broughton, R.E.
author: Roe, B.A.
journal: Submitted (21-JUN-2001) Department Of Chemistry And Biochemistry, The University Of Oklahoma, 620 Parrington Oval, Room 208, Norman, OK 73019, USA
comments: Sequence update by submitter

3
title: Direct Submission
journal: Submitted (09-JUN-2000) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

4
title: Direct Submission
author: Milam, J.E.
author: Broughton, R.E.
author: Roe, B.A.
journal: Submitted (06-JUN-2000) Department Of Chemistry And Biochemistry, The University Of Oklahoma, 620 Parrington Oval, Room 208, Norman, OK 73019, USA

5
title: Direct Submission
author: Milam, J.E.
author: Broughton, R.E.
author: Roe, B.A.
journal: Submitted (21-APR-2000) Department Of Chemistry And Biochemistry, The University Of Oklahoma, 620 Parrington Oval, Room 208, Norman, OK 73019, USA

6
title: Direct Submission
author: Milam, J.E.
author: Broughton, R.E.
author: Roe, B.A.
journal: Submitted (28-FEB-2000) Department Of Chemistry And Biochemistry, The University Of Oklahoma, 620 Parrington Oval, Room 208, Norman, OK 73019, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16596:1
position: 16596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16596:1:source
so part of: sequence
organism: Danio rerio
organelle: mitochondrion
mol type: genomic DNA

7955
type: Taxonomy
SIO_000068: taxonomy

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 7955
so part of: sequence
location: 1..950
location: region:1-950:1
so has part: feature:1-950:1:region

position:950:1
position: 950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-950:1:region

trnF
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mttf
gene: trnF
gene synonym: mttf
nomenclature: Official Symbol: mt-ti | Name: tRNA phenylalanine, mitochondrial
note: tRNAphe
so part of: sequence
location: 951..1019
location: region:951-1019:1
so has part: feature:951-1019:1:exon
subclass of: SO_0000663

140525
type: Gene
SIO_000068: ncbigene

position:951:1
position: 951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1019:1
position: 1019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:951-1019:1:exon

trnF
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7955
alternative label: mttf
gene: trnF
gene synonym: mttf
product: tRNA-Phe
SIO_010081: trnF
subclass of: SO_0000673
so part of: trnF
location: 951..1019
location: region:951-1019:1
so has part: feature:951-1019:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:951-1019:1:exon

mt-rnr1
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mtrnr1
gene: mt-rnr1
gene synonym: mtrnr1
nomenclature: Official Symbol: mt-rnr1 | Name: 12S RNA, mitochondrial
so part of: sequence
location: 1020..1971
location: region:1020-1971:1
so has part: feature:1020-1971:1:exon
subclass of: SO_0000573

140505
type: Gene
SIO_000068: ncbigene

position:1020:1
position: 1020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1971:1
position: 1971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1020-1971:1:exon

mt-rnr1
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 7955
alternative label: mtrnr1
gene: mt-rnr1
gene synonym: mtrnr1
product: s-rRNA
note: 12S rRNA
SIO_010081: mt-rnr1
subclass of: SO_0000673
so part of: mt-rnr1
location: 1020..1971
location: region:1020-1971:1
so has part: feature:1020-1971:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1020-1971:1:exon

trnV
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mttv
gene: trnV
gene synonym: mttv
nomenclature: Official Symbol: mt-tv | Name: tRNA valine, mitochondrial
note: tRNAval
so part of: sequence
location: 1972..2042
location: region:1972-2042:1
so has part: feature:1972-2042:1:exon
subclass of: SO_0000663

140507
type: Gene
SIO_000068: ncbigene

position:1972:1
position: 1972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2042:1
position: 2042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1972-2042:1:exon

trnV
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7955
alternative label: mttv
gene: trnV
gene synonym: mttv
product: tRNA-Val
SIO_010081: trnV
subclass of: SO_0000673
so part of: trnV
location: 1972..2042
location: region:1972-2042:1
so has part: feature:1972-2042:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1972-2042:1:exon

mt-rnr2
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mtrnr2
gene: mt-rnr2
gene synonym: mtrnr2
nomenclature: Official Symbol: mt-rnr2 | Name: 16S RNA, mitochondrial
so part of: sequence
location: 2043..3725
location: region:2043-3725:1
so has part: feature:2043-3725:1:exon
subclass of: SO_0000573

140506
type: Gene
SIO_000068: ncbigene

position:2043:1
position: 2043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3725:1
position: 3725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2043-3725:1:exon

mt-rnr2
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 7955
alternative label: mtrnr2
gene: mt-rnr2
gene synonym: mtrnr2
product: l-rRNA
note: 16S rRNA
SIO_010081: mt-rnr2
subclass of: SO_0000673
so part of: mt-rnr2
location: 2043..3725
location: region:2043-3725:1
so has part: feature:2043-3725:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2043-3725:1:exon

trnL1
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mttl1
gene: trnL1
gene synonym: mttl1
nomenclature: Official Symbol: mt-tl1 | Name: tRNA leucine 1 (TAA), mitochondrial
note: tRNAleu (TAA)
so part of: sequence
location: 3726..3802
location: region:3726-3802:1
so has part: feature:3726-3802:1:exon
subclass of: SO_0000663

140530
type: Gene
SIO_000068: ncbigene

position:3726:1
position: 3726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3802:1
position: 3802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3726-3802:1:exon

trnL1
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7955
alternative label: mttl1
gene: trnL1
gene synonym: mttl1
product: tRNA-Leu
codon recognized: UUR
SIO_010081: trnL1
subclass of: SO_0000673
so part of: trnL1
location: 3726..3802
location: region:3726-3802:1
so has part: feature:3726-3802:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3726-3802:1:exon

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mtnd1
gene: ND1
gene synonym: mtnd1
nomenclature: Official Symbol: mt-nd1 | Name: NADH dehydrogenase 1, mitochondrial
so part of: sequence
location: 3803..4777
location: region:3803-4777:1
so has part: feature:3803-4777:1:exon
subclass of: SO_0000010

140531
type: Gene
SIO_000068: ncbigene

position:3803:1
position: 3803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4777:1
position: 4777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3803-4777:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7955
alternative label: mtnd1
gene: ND1
gene synonym: mtnd1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MLDILTSHLINPLAYAVPVLIAVAFLTLVERKVLGYMQLRKGPNVMGPRGLLQSVADGVKLFIKEPIRPSMASPILFLTAPVLALILAMMLWAPMPMPYPVLDLNLGILFIMAISSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSAVIFSGGYTLQTFNTTQEDTWLLLPLWPLAIMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYSNILLMNTHSTVLFLGASFTPDAPELMTISIATKTAMLSILFLWMRASYPRFRYDQLMHLIWKNFLPITLVLVLWHIALPIALAGLPPQT
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 3803..4777
location: region:3803-4777:1
so has part: feature:3803-4777:1:exon

NP_059331.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3803-4777:1:exon

trnI
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mtti
gene: trnI
gene synonym: mtti
nomenclature: Official Symbol: mt-ti | Name: tRNA isoleucine, mitochondrial
note: tRNAile
so part of: sequence
location: 4781..4854
location: region:4781-4854:1
so has part: feature:4781-4854:1:exon
subclass of: SO_0000663

140521
type: Gene
SIO_000068: ncbigene

position:4781:1
position: 4781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4854:1
position: 4854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4781-4854:1:exon

trnI
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7955
alternative label: mtti
gene: trnI
gene synonym: mtti
product: tRNA-Ile
SIO_010081: trnI
subclass of: SO_0000673
so part of: trnI
location: 4781..4854
location: region:4781-4854:1
so has part: feature:4781-4854:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4781-4854:1:exon

trnQ
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mttq
gene: trnQ
gene synonym: mttq
nomenclature: Official Symbol: mt-tq | Name: tRNA glutamine, mitochondrial
note: tRNAgln
so part of: sequence
location: complement(4852..4922)
location: region:4852-4922:-1
so has part: feature:4852-4922:-1:exon
subclass of: SO_0000663

140516
type: Gene
SIO_000068: ncbigene

position:4852:-1
position: 4852
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4922:-1
position: 4922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4852-4922:-1:exon

trnQ
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7955
alternative label: mttq
gene: trnQ
gene synonym: mttq
product: tRNA-Gln
SIO_010081: trnQ
subclass of: SO_0000673
so part of: trnQ
location: complement(4852..4922)
location: region:4852-4922:-1
so has part: feature:4852-4922:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4852-4922:-1:exon

trnM
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mttm
gene: trnM
gene synonym: mttm
nomenclature: Official Symbol: mt-tm | Name: tRNA methionine, mitochondrial
note: tRNAmet
so part of: sequence
location: 4924..4992
location: region:4924-4992:1
so has part: feature:4924-4992:1:exon
subclass of: SO_0000663

140522
type: Gene
SIO_000068: ncbigene

position:4924:1
position: 4924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4992:1
position: 4992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4924-4992:1:exon

trnM
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7955
alternative label: mttm
gene: trnM
gene synonym: mttm
product: tRNA-Met
SIO_010081: trnM
subclass of: SO_0000673
so part of: trnM
location: 4924..4992
location: region:4924-4992:1
so has part: feature:4924-4992:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4924-4992:1:exon

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mtnd2
gene: ND2
gene synonym: mtnd2
nomenclature: Official Symbol: mt-nd2 | Name: NADH dehydrogenase 2, mitochondrial
note: cb950; mtnd2
so part of: sequence
location: 4993..6039
location: region:4993-6039:1
so has part: feature:4993-6039:1:exon
subclass of: SO_0000010

140532
type: Gene
SIO_000068: ncbigene

position:4993:1
position: 4993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6039:1
position: 6039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4993-6039:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7955
alternative label: mtnd2
gene: ND2
gene synonym: mtnd2
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPYVLMILMSSLGLGTTLTFSSSHWILAWMGLEINTLAIVPLMAQQHHPRAVEATTKYFLIQAAAAAMILFTSTTNAWISGQWDVTGMPGPATSTAMMFALALKIGLAPMHFWLPEVLQGLDLLTGLILSTWQKLAPMALIIQTTQTTDPLILTSLGIASSLIGGWSGLNQTQLRKILAYSSIAHMGWMIIVIQYAPQLTLIALGTYIFMTSAAFLTLKVLSATKINTLTTTWPKSPILAAIATLVMLSLGGLPPLTGFMPKWLILQELTKQDLPATATIMALTALLSLFFYLRLCHAMTLTTSPNTINSAPHWRVQTTQNSLPLTISVTVTMGLLPLTPAILMLTT
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 4993..6039
location: region:4993-6039:1
so has part: feature:4993-6039:1:exon

NP_059332.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4993-6039:1:exon

trnW
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mttw
gene: trnW
gene synonym: mttw
nomenclature: Official Symbol: mt-tw | Name: tRNA tryptophan, mitochondrial
note: tRNAtrp
so part of: sequence
location: 6038..6107
location: region:6038-6107:1
so has part: feature:6038-6107:1:exon
subclass of: SO_0000663

140523
type: Gene
SIO_000068: ncbigene

position:6038:1
position: 6038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6107:1
position: 6107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6038-6107:1:exon

trnW
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7955
alternative label: mttw
gene: trnW
gene synonym: mttw
product: tRNA-Trp
SIO_010081: trnW
subclass of: SO_0000673
so part of: trnW
location: 6038..6107
location: region:6038-6107:1
so has part: feature:6038-6107:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6038-6107:1:exon

trnA
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mtta
gene: trnA
gene synonym: mtta
nomenclature: Official Symbol: mt-ta | Name: tRNA alanine, mitochondrial
note: tRNAala
so part of: sequence
location: complement(6109..6176)
location: region:6109-6176:-1
so has part: feature:6109-6176:-1:exon
subclass of: SO_0000663

140509
type: Gene
SIO_000068: ncbigene

position:6109:-1
position: 6109
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6176:-1
position: 6176
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6109-6176:-1:exon

trnA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7955
alternative label: mtta
gene: trnA
gene synonym: mtta
product: tRNA-Ala
SIO_010081: trnA
subclass of: SO_0000673
so part of: trnA
location: complement(6109..6176)
location: region:6109-6176:-1
so has part: feature:6109-6176:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6109-6176:-1:exon

trnN
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mttn
gene: trnN
gene synonym: mttn
nomenclature: Official Symbol: mt-tn | Name: tRNA asparagine, mitochondrial
note: tRNAasn
so part of: sequence
location: complement(6178..6250)
location: region:6178-6250:-1
so has part: feature:6178-6250:-1:exon
subclass of: SO_0000663

140524
type: Gene
SIO_000068: ncbigene

position:6178:-1
position: 6178
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6250:-1
position: 6250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6178-6250:-1:exon

trnN
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7955
alternative label: mttn
gene: trnN
gene synonym: mttn
product: tRNA-Asn
SIO_010081: trnN
subclass of: SO_0000673
so part of: trnN
location: complement(6178..6250)
location: region:6178-6250:-1
so has part: feature:6178-6250:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6178-6250:-1:exon

rep_origin
type: Replication Origin
subclass of: SO_0000296
RO_0002162: 7955
note: putative light strand origin of replication; mtolr
so part of: sequence
location: complement(6251..6282)
location: region:6251-6282:-1
so has part: feature:6251-6282:-1:region

140543
type: Gene
SIO_000068: ncbigene

position:6251:-1
position: 6251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6282:-1
position: 6282
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6251-6282:-1:region

ZDB-GENE-011205-27
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mttc
gene: trnC
locus tag: ZDB-GENE-011205-27
gene synonym: mttc
nomenclature: Official Symbol: mt-tc | Name: tRNA cysteine, mitochondrial
note: tRNAcys
so part of: sequence
location: complement(6283..6354)
location: region:6283-6354:-1
so has part: feature:6283-6354:-1:exon
subclass of: SO_0000663

140513
type: Gene
SIO_000068: ncbigene

position:6283:-1
position: 6283
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6354:-1
position: 6354
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6283-6354:-1:exon

ZDB-GENE-011205-27
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7955
alternative label: mttc
gene: trnC
locus tag: ZDB-GENE-011205-27
gene synonym: mttc
product: tRNA-Cys
SIO_010081: ZDB-GENE-011205-27
subclass of: SO_0000673
so part of: ZDB-GENE-011205-27
location: complement(6283..6354)
location: region:6283-6354:-1
so has part: feature:6283-6354:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6283-6354:-1:exon

trnY
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mtty
gene: trnY
gene synonym: mtty
nomenclature: Official Symbol: mt-ty | Name: tRNA tyrosine, mitochondrial
note: tRNAtyr
so part of: sequence
location: complement(6353..6423)
location: region:6353-6423:-1
so has part: feature:6353-6423:-1:exon
subclass of: SO_0000663

140514
type: Gene
SIO_000068: ncbigene

position:6353:-1
position: 6353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6423:-1
position: 6423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6353-6423:-1:exon

trnY
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7955
alternative label: mtty
gene: trnY
gene synonym: mtty
product: tRNA-Tyr
SIO_010081: trnY
subclass of: SO_0000673
so part of: trnY
location: complement(6353..6423)
location: region:6353-6423:-1
so has part: feature:6353-6423:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6353-6423:-1:exon

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mtco1
gene: COX1
gene synonym: mtco1
nomenclature: Official Symbol: mt-co1 | Name: cytochrome c oxidase I, mitochondrial
note: COI; mtco1
so part of: sequence
location: 6425..7975
location: region:6425-7975:1
so has part: feature:6425-7975:1:exon
subclass of: SO_0000010

140539
type: Gene
SIO_000068: ncbigene

position:6425:1
position: 6425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7975:1
position: 7975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6425-7975:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7955
alternative label: mtco1
gene: COX1
gene synonym: mtco1
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MTITRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTTINMKPPTISQYQTPLFVWAVLVTAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHVVAYYAGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGAIKWETPMLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAGFVHWFPLFTGYTLNSVWTKIHFGVMFIGVNLTFFPQHFLGLAGMPRRYSDYPDAYALWNTVSSIGSLISLVAVIMFLFILWEAFTAKREVLSVELTATNVEWLHGCPPPYHTFEEPAFVQIQSN
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 6425..7975
location: region:6425-7975:1
so has part: feature:6425-7975:1:exon

NP_059333.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6425-7975:1:exon

trnS1
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mtts1
gene: trnS1
gene synonym: mtts1
nomenclature: Official Symbol: mt-ts1 | Name: tRNA serine 1 (TGA), mitochondrial
note: tRNAser (TGA)
so part of: sequence
location: complement(7976..8046)
location: region:7976-8046:-1
so has part: feature:7976-8046:-1:exon
subclass of: SO_0000663

140528
type: Gene
SIO_000068: ncbigene

position:7976:-1
position: 7976
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8046:-1
position: 8046
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7976-8046:-1:exon

trnS1
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7955
alternative label: mtts1
gene: trnS1
gene synonym: mtts1
product: tRNA-Ser
codon recognized: UCN
SIO_010081: trnS1
subclass of: SO_0000673
so part of: trnS1
location: complement(7976..8046)
location: region:7976-8046:-1
so has part: feature:7976-8046:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7976-8046:-1:exon

trnD
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mttd
gene: trnD
gene synonym: mttd
nomenclature: Official Symbol: mt-td | Name: tRNA aspartic acid, mitochondrial
note: tRNAasp
so part of: sequence
location: 8049..8117
location: region:8049-8117:1
so has part: feature:8049-8117:1:exon
subclass of: SO_0000663

140526
type: Gene
SIO_000068: ncbigene

position:8049:1
position: 8049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8117:1
position: 8117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8049-8117:1:exon

trnD
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7955
alternative label: mttd
gene: trnD
gene synonym: mttd
product: tRNA-Asp
SIO_010081: trnD
subclass of: SO_0000673
so part of: trnD
location: 8049..8117
location: region:8049-8117:1
so has part: feature:8049-8117:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8049-8117:1:exon

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mtco2
gene: COX2
gene synonym: mtco2
nomenclature: Official Symbol: mt-co2 | Name: cytochrome c oxidase II, mitochondrial
note: COII
so part of: sequence
location: 8130..8820
location: region:8130-8820:1
so has part: feature:8130-8820:1:exon
subclass of: SO_0000010

140540
type: Gene
SIO_000068: ncbigene

position:8130:1
position: 8130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8820:1
position: 8820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8130-8820:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7955
alternative label: mtco2
gene: COX2
gene synonym: mtco2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:8820,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHPAQLGFQDAASPVMEELLCFHDHALMIVFLISTLVLYIIIAMVSTKLTNKFILDSQEIEIVWTVLPAIILILIALPSLRILYLMDEINDPHVTIKAVGHQWYWSYEYTDYENLEFDSYMVPTQDLTPGGFRLLETDHRMVVPKESPIRILVSAEDVLHSWAVPSLGIKMDAVPGRLNQTAFIVSRPGVFYGQCSEICGANHSFMPIVVEAVPLEFFENWSSAMLEDA
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 8130..8820
location: region:8130-8820:1
so has part: feature:8130-8820:1:exon

NP_059334.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8130-8820:1:exon

trnK
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mttk
gene: trnK
gene synonym: mttk
nomenclature: Official Symbol: mt-tk | Name: tRNA lysine, mitochondrial
note: tRNAlys
so part of: sequence
location: 8821..8893
location: region:8821-8893:1
so has part: feature:8821-8893:1:exon
subclass of: SO_0000663

140508
type: Gene
SIO_000068: ncbigene

position:8821:1
position: 8821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8893:1
position: 8893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8821-8893:1:exon

trnK
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7955
alternative label: mttk
gene: trnK
gene synonym: mttk
product: tRNA-Lys
SIO_010081: trnK
subclass of: SO_0000673
so part of: trnK
location: 8821..8893
location: region:8821-8893:1
so has part: feature:8821-8893:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8821-8893:1:exon

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mtatp8
gene: ATP8
gene synonym: mtatp8
nomenclature: Official Symbol: mt-atp8 | Name: ATP synthase 8, mitochondrial
note: cb795; mtatp8
so part of: sequence
location: 8894..9058
location: region:8894-9058:1
so has part: feature:8894-9058:1:exon
subclass of: SO_0000010

140520
type: Gene
SIO_000068: ncbigene

position:8894:1
position: 8894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9058:1
position: 9058
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8894-9058:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7955
alternative label: mtatp8
gene: ATP8
gene synonym: mtatp8
note: ATP synthase 8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNPKPWFMILFFSWVIFLTIIPTKIINHIQPNDPTQVDAKEHKNDTWNWPW
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 8894..9058
location: region:8894-9058:1
so has part: feature:8894-9058:1:exon

NP_059335.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8894-9058:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mtatp6
gene: ATP6
gene synonym: mtatp6
nomenclature: Official Symbol: mt-atp6 | Name: ATP synthase 6, mitochondrial
note: zgc:85637
so part of: sequence
location: 9052..9735
location: region:9052-9735:1
so has part: feature:9052-9735:1:exon
subclass of: SO_0000010

140519
type: Gene
SIO_000068: ncbigene

position:9052:1
position: 9052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9735:1
position: 9735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9052-9735:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7955
alternative label: mtatp6
gene: ATP6
gene synonym: mtatp6
note: ATP synthase 6
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: MMTSFFDQFASPYLLGIPLILVAMLLPWLLFPAPTSRWINNRLITVQTWLTGRFTNQLMTPLNFSGHKWALLFASLMVFLITINLLGLLPYTFTPTTQLSLNMGFAVPLWLATVIIGMKNQPTIALGHLLPEGTPIPLIPALIIIETISLFIRPLALGVRLTANLTAGHLLIQLIATAVFVLLPMMPAVAILTASVLFLLTLLEVAVAMIQAYVFILLLSLYLQENI
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 9052..9735
location: region:9052-9735:1
so has part: feature:9052-9735:1:exon

NP_059336.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9052-9735:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mtco3
gene: COX3
gene synonym: mtco3
nomenclature: Official Symbol: mt-co3 | Name: cytochrome c oxidase III, mitochondrial
note: COIII
so part of: sequence
location: 9735..10520
location: region:9735-10520:1
so has part: feature:9735-10520:1:exon
subclass of: SO_0000010

140541
type: Gene
SIO_000068: ncbigene

position:10520:1
position: 10520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9735-10520:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7955
alternative label: mtco3
gene: COX3
gene synonym: mtco3
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit III
translation: MAHQAHAYHMVDPSPWPLTGAVAALLMSSGLAIWFHLHSMTLIVLGMILLILTMIQWWRDIIREGTFQGHHTPPVQKGLRYGMILFITSEVFFFLGFFWAFYHSSLAPTPELGGCWPPTGLTTLDPFEVPLLNTAVLLASGVTVTWAHHSLMEGERKQAIQSLALTILLGLYFTALQAMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQVLFHFTSDHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 9735..10520
location: region:9735-10520:1
so has part: feature:9735-10520:1:exon

NP_059337.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9735-10520:1:exon

trnG
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mttg
gene: trnG
gene synonym: mttg
nomenclature: Official Symbol: mt-tg | Name: tRNA glycine, mitochondrial
note: tRNAgly
so part of: sequence
location: 10520..10589
location: region:10520-10589:1
so has part: feature:10520-10589:1:exon
subclass of: SO_0000663

140510
type: Gene
SIO_000068: ncbigene

position:10589:1
position: 10589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10520-10589:1:exon

trnG
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7955
alternative label: mttg
gene: trnG
gene synonym: mttg
product: tRNA-Gly
SIO_010081: trnG
subclass of: SO_0000673
so part of: trnG
location: 10520..10589
location: region:10520-10589:1
so has part: feature:10520-10589:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10520-10589:1:exon

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mtnd3
gene: ND3
gene synonym: mtnd3
nomenclature: Official Symbol: mt-nd3 | Name: NADH dehydrogenase 3, mitochondrial
so part of: sequence
location: 10590..10940
location: region:10590-10940:1
so has part: feature:10590-10940:1:exon
subclass of: SO_0000010

140533
type: Gene
SIO_000068: ncbigene

position:10590:1
position: 10590
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10940:1
position: 10940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10590-10940:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7955
alternative label: mtnd3
gene: ND3
gene synonym: mtnd3
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNLFATILIIMTTLSLVLALVSFWLPQMNSDTEKLSPYECGFDPLGSARLPFSLRFFLVAVLFPLFDLEIALLLPLPWGDQLNNPMETLFWAMTVLILLTLGLAYEWAQGGLEWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 10590..10940
location: region:10590-10940:1
so has part: feature:10590-10940:1:exon

NP_059338.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10590-10940:1:exon

trnR
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mttr
gene: trnR
gene synonym: mttr
nomenclature: Official Symbol: mt-tr | Name: tRNA arginine, mitochondrial
note: tRNAarg
so part of: sequence
location: 10939..11008
location: region:10939-11008:1
so has part: feature:10939-11008:1:exon
subclass of: SO_0000663

140515
type: Gene
SIO_000068: ncbigene

position:10939:1
position: 10939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11008:1
position: 11008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10939-11008:1:exon

trnR
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7955
alternative label: mttr
gene: trnR
gene synonym: mttr
product: tRNA-Arg
SIO_010081: trnR
subclass of: SO_0000673
so part of: trnR
location: 10939..11008
location: region:10939-11008:1
so has part: feature:10939-11008:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10939-11008:1:exon

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mtnd4l
gene: ND4L
gene synonym: mtnd4l
nomenclature: Official Symbol: mt-nd4l | Name: NADH dehydrogenase 4L, mitochondrial
so part of: sequence
location: 11009..11305
location: region:11009-11305:1
so has part: feature:11009-11305:1:exon
subclass of: SO_0000010

140538
type: Gene
SIO_000068: ncbigene

position:11009:1
position: 11009
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11305:1
position: 11305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11009-11305:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7955
alternative label: mtnd4l
gene: ND4L
gene synonym: mtnd4l
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MTPTHFSLNAAFMLGLAGLTFHRVHLLSALLCLEGMMLSLFISMALWTLKTESMSLSTAPMLLLAFSACEASAGLALLVATARTHGSDHMKNLNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 11009..11305
location: region:11009-11305:1
so has part: feature:11009-11305:1:exon

NP_059339.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11009-11305:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mtnd4
gene: ND4
gene synonym: mtnd4
nomenclature: Official Symbol: mt-nd4 | Name: NADH dehydrogenase 4, mitochondrial
so part of: sequence
location: 11299..12679
location: region:11299-12679:1
so has part: feature:11299-12679:1:exon
subclass of: SO_0000010

140534
type: Gene
SIO_000068: ncbigene

position:11299:1
position: 11299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12679:1
position: 12679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11299-12679:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7955
alternative label: mtnd4
gene: ND4
gene synonym: mtnd4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:12679,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKVLIPTIMLFPTIWLSSSKWLWTTTTMNSFLIAFISLTWLKWTSDTGWNASNSYMAADPLSTPLLVLTCWLLPLMILASQNHINSEPVNRQRMYITLLASLQTFMIMAFGATKIIMFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQQSTGTLSMLVLQYSDPLLLNSWGHKIWWAGCLIAFLVKMPLYGMHLWLPKAHVEAPVAGSMILAAVLLKLGGYGMMRMMVMLDPLSKQLAYPFIILALWGVIMTGLVCLRQTDLKSLIAYSSVGHMGLVAGGILIQTPWGFTGAIILMIAHGLTSSALFCLANTSYERTHSRTMILARGLQMVLPLATVWWFIANLANLALPPLPNLMGELMIITALFNWSPWTIIITGMGTLITANYSLYMFLTSQRGSIPEHITNLSPSHTREHLLMTLHLIPIILLMLKPELMWGWCN
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 11299..12679
location: region:11299-12679:1
so has part: feature:11299-12679:1:exon

NP_059340.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11299-12679:1:exon

trnH
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mtth
gene: trnH
gene synonym: mtth
nomenclature: Official Symbol: mt-th | Name: tRNA histidine, mitochondrial
note: tRNAhis
so part of: sequence
location: 12681..12750
location: region:12681-12750:1
so has part: feature:12681-12750:1:exon
subclass of: SO_0000663

140517
type: Gene
SIO_000068: ncbigene

position:12681:1
position: 12681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12750:1
position: 12750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12681-12750:1:exon

trnH
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7955
alternative label: mtth
gene: trnH
gene synonym: mtth
product: tRNA-His
SIO_010081: trnH
subclass of: SO_0000673
so part of: trnH
location: 12681..12750
location: region:12681-12750:1
so has part: feature:12681-12750:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12681-12750:1:exon

trnS2
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mtts2
gene: trnS2
gene synonym: mtts2
nomenclature: Official Symbol: mt-ts2 | Name: tRNA serine 2 (GCT), mitochondrial
note: tRNAser (GCT)
so part of: sequence
location: 12750..12819
location: region:12750-12819:1
so has part: feature:12750-12819:1:exon
subclass of: SO_0000663

140529
type: Gene
SIO_000068: ncbigene

position:12819:1
position: 12819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12750-12819:1:exon

trnS2
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7955
alternative label: mtts2
gene: trnS2
gene synonym: mtts2
product: tRNA-Ser
codon recognized: AGY
SIO_010081: trnS2
subclass of: SO_0000673
so part of: trnS2
location: 12750..12819
location: region:12750-12819:1
so has part: feature:12750-12819:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12750-12819:1:exon

trnL2
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mttl2
gene: trnL2
gene synonym: mttl2
nomenclature: Official Symbol: mt-tl2 | Name: tRNA leucine 2 (TAG), mitochondrial
note: tRNAleu (TAG)
so part of: sequence
location: 12823..12895
location: region:12823-12895:1
so has part: feature:12823-12895:1:exon
subclass of: SO_0000663

140537
type: Gene
SIO_000068: ncbigene

position:12823:1
position: 12823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12895:1
position: 12895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12823-12895:1:exon

trnL2
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7955
alternative label: mttl2
gene: trnL2
gene synonym: mttl2
product: tRNA-Leu
codon recognized: CUN
SIO_010081: trnL2
subclass of: SO_0000673
so part of: trnL2
location: 12823..12895
location: region:12823-12895:1
so has part: feature:12823-12895:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12823-12895:1:exon

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mtnd5
gene: ND5
gene synonym: mtnd5
nomenclature: Official Symbol: mt-nd5 | Name: NADH dehydrogenase 5, mitochondrial
so part of: sequence
location: 12897..14717
location: region:12897-14717:1
so has part: feature:12897-14717:1:exon
subclass of: SO_0000010

140535
type: Gene
SIO_000068: ncbigene

position:12897:1
position: 12897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14717:1
position: 14717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12897-14717:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7955
alternative label: mtnd5
gene: ND5
gene synonym: mtnd5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MTDMIMPLTLILIFAVLSYPLLKPKSYSKSNNSFQAWNAVHVSFLISLIPLTMMLYKESDHVVMCWSWMNTQAFNVDLSFKFDYYSVTFTSIALFITWSILEFASWYMASYPQKELFYKYLLLFLMSMIILVTANNLFQLFIGWEGVGIMSFLLIGWWFGRTEANTASLQAVIYNRMGDIGFILTLAWMAMYLNSWDIQQIFILSKDFDMTIPQIGLIIAATGKSAQFTLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRLHPIMETNKLAPTICLCLGALTTLFAATCALTQNDIKKIVAFSTSSQLGLMMVAIGLNQPHLAFFHICTHAFFKAMLFLCSGAIIHSLNNEQDIRKMGGTYHTLPMTTNYLTIGKMALMGTPFLAGFFSKDAILEAMTTSHLNAWALTLTLIATSFTAVYSFRMIYLVCLGSPRHKTYETIDENHIPTNTIQRLAWGSIIAGLIISYTMIPLKTPILTMPIYLKLAAILVTLLGIILGLEISTLANKINKNTTPGIPFHFSISLIFFPILHRLIPMRKLFMGESAATKIEKSWSELFGPCGIAFTLMTVATFVKDHRMASIKSYLAVFLTSIILKMMMLKLYT
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 12897..14717
location: region:12897-14717:1
so has part: feature:12897-14717:1:exon

NP_059341.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12897-14717:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mtnd6
gene: ND6
gene synonym: mtnd6
nomenclature: Official Symbol: mt-nd6 | Name: NADH dehydrogenase 6, mitochondrial
so part of: sequence
location: complement(14714..15232)
location: region:14714-15232:-1
so has part: feature:14714-15232:-1:exon
subclass of: SO_0000010

140536
type: Gene
SIO_000068: ncbigene

position:14714:-1
position: 14714
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15232:-1
position: 15232
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14714-15232:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7955
alternative label: mtnd6
gene: ND6
gene synonym: mtnd6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MAFYLSFLMAALVGGMIAIASNPAPYFAAFGLVVVAGVGCGILVSYGGSFLSLILFLIYLGGMLVVFAYSAALAAEPFPEAWGDRVVFWRVMVYGLVVIVAAGFLLTGDTGLLMSVDAFKEFSVIRADVSGVAMMYSSGGKMLVICAWVLLLTLFVVLEVTRGLSYGVLRAI
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(14714..15232)
location: region:14714-15232:-1
so has part: feature:14714-15232:-1:exon

NP_059342.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14714-15232:-1:exon

trnE
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mtte
gene: trnE
gene synonym: mtte
nomenclature: Official Symbol: mt-te | Name: tRNA glutamic acid, mitochondrial
so part of: sequence
location: complement(15233..15301)
location: region:15233-15301:-1
so has part: feature:15233-15301:-1:exon
subclass of: SO_0000663

140527
type: Gene
SIO_000068: ncbigene

position:15233:-1
position: 15233
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15301:-1
position: 15301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15233-15301:-1:exon

trnE
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7955
alternative label: mtte
gene: trnE
gene synonym: mtte
product: tRNA-Glu
SIO_010081: trnE
subclass of: SO_0000673
so part of: trnE
location: complement(15233..15301)
location: region:15233-15301:-1
so has part: feature:15233-15301:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15233-15301:-1:exon

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mtcyb
gene: CYTB
gene synonym: mtcyb
nomenclature: Official Symbol: mt-cyb | Name: cytochrome b, mitochondrial
note: COB; Cytb
so part of: sequence
location: 15308..16448
location: region:15308-16448:1
so has part: feature:15308-16448:1:exon
subclass of: SO_0000010

140512
type: Gene
SIO_000068: ncbigene

position:15308:1
position: 15308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16448:1
position: 16448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15308-16448:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7955
alternative label: mtcyb
gene: CYTB
gene synonym: mtcyb
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:16448,aa:TERM)
transl table: 2
product: cytochrome b
translation: MTSLRKTHPVLKIANDALVDLPTPLNISAWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVVHICRDVNFGWLIRSIHANGASFFFICLYIHIARGLYYGSYLYNETWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFIIIAMVILHLLFLHETGSNNPLGLNPNMDKIPFHPYFSNKDLLGFVIMLFSLSLLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGMAFRPVTQFLFWTLVADMLVLTWIGGMPVEHPYIIIGQMASILYFSLFLVLFPITGILENKALQWS
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 15308..16448
location: region:15308-16448:1
so has part: feature:15308-16448:1:exon

NP_059343.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15308-16448:1:exon

trnT
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mttt
gene: trnT
gene synonym: mttt
nomenclature: Official Symbol: mt-tt | Name: tRNA threonine, mitochondrial
note: tRNAthr
so part of: sequence
location: 16449..16520
location: region:16449-16520:1
so has part: feature:16449-16520:1:exon
subclass of: SO_0000663

140518
type: Gene
SIO_000068: ncbigene

position:16449:1
position: 16449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16520:1
position: 16520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16449-16520:1:exon

trnT
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7955
alternative label: mttt
gene: trnT
gene synonym: mttt
product: tRNA-Thr
SIO_010081: trnT
subclass of: SO_0000673
so part of: trnT
location: 16449..16520
location: region:16449-16520:1
so has part: feature:16449-16520:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16449-16520:1:exon

trnP
type: Gene
subclass of: SO_0000704
RO_0002162: 7955
alternative label: mttp
gene: trnP
gene synonym: mttp
nomenclature: Official Symbol: mt-tp | Name: tRNA proline, mitochondrial
note: tRNApro
so part of: sequence
location: complement(16527..16596)
location: region:16527-16596:-1
so has part: feature:16527-16596:-1:exon
subclass of: SO_0000663

140511
type: Gene
SIO_000068: ncbigene

position:16527:-1
position: 16527
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16596:-1
position: 16596
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16527-16596:-1:exon

trnP
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7955
alternative label: mttp
gene: trnP
gene synonym: mttp
product: tRNA-Pro
SIO_010081: trnP
subclass of: SO_0000673
so part of: trnP
location: complement(16527..16596)
location: region:16527-16596:-1
so has part: feature:16527-16596:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16527-16596:-1:exon