Lepisosteus oculatus isolate Spotted Gar 1 linkage group LG29, LepOcu1, whole genome shotgun sequence.
type: Entry
definition: Lepisosteus oculatus isolate Spotted Gar 1 linkage group LG29, LepOcu1, whole genome shotgun sequence.
sequence version: NC_023207.1
sequence date: 2016-01-08
sequence: sequence
division: CON
label: NC_023207.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA221149
dblink: SAMN00706774
keyword: WGS
keyword: RefSeq
source: Lepisosteus oculatus (spotted gar)
organism: Lepisosteus oculatus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM001432.1.\nAssembly name: LepOcu1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Broad Institute on\n2012/01/13. The original whole-genome shotgun project has the\naccession AHAT00000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Broad Institute\nAssembly Method :: AllPaths v. R38293\nAssembly Name :: LepOcu1\nGenome Coverage :: 677.5x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Version :: Lepisosteus oculatus Annotation\n Release 101\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 6.5\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000018
sequence length: 293761
topology: linear
so has quality: SO_0000987
location: 1..293761
location: region:1-293761:1
RO_0002162: 7918

NC_023207
type: RefSeq
SIO_000068: refseq

PRJNA221149
type: BioProject
SIO_000068: bioproject

SAMN00706774
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:293761:1
position: 293761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-293761:1:source
so part of: sequence
organism: Lepisosteus oculatus
mol type: genomic DNA
isolate: Spotted Gar 1
sex: female
country: USA: Bayou Chevreuil, St. James Parish, Louisiana
lat lon: 29.91 N 90.80 W
linkage group: LG29

7918
type: Taxonomy
SIO_000068: taxonomy

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 7918
estimated length: unknown
gap type: between scaffolds
so part of: sequence
location: 67759..67858
location: region:67759-67858:1
so has part: feature:67759-67858:1:region

position:67759:1
position: 67759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:67858:1
position: 67858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:67759-67858:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 7918
estimated length: unknown
gap type: between scaffolds
so part of: sequence
location: 81673..81772
location: region:81673-81772:1
so has part: feature:81673-81772:1:region

position:81673:1
position: 81673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:81772:1
position: 81772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:81673-81772:1:region

LOC107075906
type: Gene
subclass of: SO_0000704
RO_0002162: 7918
gene: LOC107075906
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <19752..28149
location: region:19752-28149:1
so has part: feature:19752-28149:1:exon
subclass of: SO_0000010

107075906
type: Gene
SIO_000068: ncbigene

position:19752:1
position: 19752
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:28149:1
position: 28149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19752-28149:1:exon

LOC107075906
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7918
gene: LOC107075906
product: antigen WC1.1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 84% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_015338920.1
SIO_010081: LOC107075906
subclass of: SO_0000673
so part of: LOC107075906
location: join(<19752..20096,20315..20626,21252..21569,22047..22085,22834..23148,23729..24031,24217..24285,24472..24783,25098..25136,25405..25548,25870..25968,26250..26321,26927..27013,27765..27851,28040..28149)
location: region:19752-28149:1
so has part: feature:19752-20096:1:exon
so has part: feature:20315-20626:1:exon
so has part: feature:21252-21569:1:exon
so has part: feature:22047-22085:1:exon
so has part: feature:22834-23148:1:exon
so has part: feature:23729-24031:1:exon
so has part: feature:24217-24285:1:exon
so has part: feature:24472-24783:1:exon
so has part: feature:25098-25136:1:exon
so has part: feature:25405-25548:1:exon
so has part: feature:25870-25968:1:exon
so has part: feature:26250-26321:1:exon
so has part: feature:26927-27013:1:exon
so has part: feature:27765-27851:1:exon
so has part: feature:28040-28149:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:19752-20096:1:exon

position:20096:1
position: 20096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:20315-20626:1:exon

position:20315:1
position: 20315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20626:1
position: 20626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:21252-21569:1:exon

position:21252:1
position: 21252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21569:1
position: 21569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:22047-22085:1:exon

position:22047:1
position: 22047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22085:1
position: 22085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:22834-23148:1:exon

position:22834:1
position: 22834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23148:1
position: 23148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:23729-24031:1:exon

position:23729:1
position: 23729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24031:1
position: 24031
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:24217-24285:1:exon

position:24217:1
position: 24217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24285:1
position: 24285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:24472-24783:1:exon

position:24472:1
position: 24472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24783:1
position: 24783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:25098-25136:1:exon

position:25098:1
position: 25098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25136:1
position: 25136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:25405-25548:1:exon

position:25405:1
position: 25405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25548:1
position: 25548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:25870-25968:1:exon

position:25870:1
position: 25870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25968:1
position: 25968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:26250-26321:1:exon

position:26250:1
position: 26250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26321:1
position: 26321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:26927-27013:1:exon

position:26927:1
position: 26927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27013:1
position: 27013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:27765-27851:1:exon

position:27765:1
position: 27765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27851:1
position: 27851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:28040-28149:1:exon

position:28040:1
position: 28040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC107075906
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7918
gene: LOC107075906
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 3
product: antigen WC1.1-like
translation: KYCLSLSPGSADVRLVNGASPCEGTVEIQYKGEWGTVYDREWDLEDAAVVCRQLSCGSAISAPIGAHFGPGSGSVLLGWVDCRGSESALRDCSKDEVKQYYYAHEDSGVICTGRSHRGVRLVGGSDLCSGRVELQHGETWGSVCDSDFERQDAEVVCRQLDCGASSQVLKGNLFGKGEANFHSEVLHCHGNESQIFFCPKSTKTQGCTHENFVGLKCFGYTGFRLVNGLDSCSGRVELQWLFRDWGTVCDLYWDLRDASVLCQQLGCGEAVAAPGQAWFGQGSGPVRADVFECWGNESHLSHCVVSSWGRAGCSHGQDAGVICSGFPSSAVPSSETPDQLSLRLVGAGSDCAGRLEVYHNGSWGTVCDDSWDLADSQVVCRQLQCGTALSATVPASFSQGTGPIWLDEVGCLGNESSLGECPSAWWGQHDCGHKEDVRILCSDHTILRLSAGCSGQAEVYYNGTWGSVCQNGMTDSTAAVICKQLGCGNKGTIRETNSRLSPDPKWLDFVSCRKHDSTLWQCPSPAWGQNDCEDREVAEITCSGPRKEADRSTPAPQEEQPHLYCPVPLALRLAGGTNCSGRVELQYEGSWGTVCDDSWDLQDAQVVCRQLGCGDAVSAAIEASFGPGSGTIWLDEVNCTGSELHLWDCCHSGLNQSDCRHKEDAGVTCTGFSERRATPTTATGSTRTTPQTQPLGGLSVSPLALLLMGALLFVVLALLVGQLIQNRKLRKALSEGALAPYHDAVYEEIEYKLAREGTYSAPRRGRFLSDELPSGYDDVEDSEGDPVPEESIPSLKEEAPEYYDNAVTVPQSPDALSGELMSSVKEEAPEHYDDVIAVPQSPDTVSERLLSDETHSEYSDVGDSEEDPTLGKGGYSQGAQCG
SIO_010081: LOC107075906
subclass of: SO_0000673
so part of: LOC107075906
location: join(<19752..20096,20315..20626,21252..21569,22047..22085,22834..23148,23729..24031,24217..24285,24472..24783,25098..25136,25405..25548,25870..25968,26250..26321,26927..27013,27765..27851,28040..28149)
location: region:19752-28149:1
so has part: feature:19752-20096:1:exon
so has part: feature:20315-20626:1:exon
so has part: feature:21252-21569:1:exon
so has part: feature:22047-22085:1:exon
so has part: feature:22834-23148:1:exon
so has part: feature:23729-24031:1:exon
so has part: feature:24217-24285:1:exon
so has part: feature:24472-24783:1:exon
so has part: feature:25098-25136:1:exon
so has part: feature:25405-25548:1:exon
so has part: feature:25870-25968:1:exon
so has part: feature:26250-26321:1:exon
so has part: feature:26927-27013:1:exon
so has part: feature:27765-27851:1:exon
so has part: feature:28040-28149:1:exon

XP_015194406.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19752-20096:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:20315-20626:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:21252-21569:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:22047-22085:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:22834-23148:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:23729-24031:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:24217-24285:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:24472-24783:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:25098-25136:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:25405-25548:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:25870-25968:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:26250-26321:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:26927-27013:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:27765-27851:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:28040-28149:1:exon

LOC102684432
type: Gene
subclass of: SO_0000704
RO_0002162: 7918
gene: LOC102684432
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 34386..38488
location: region:34386-38488:1
so has part: feature:34386-38488:1:exon
subclass of: SO_0000010

102684432
type: Gene
SIO_000068: ncbigene

position:34386:1
position: 34386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38488:1
position: 38488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34386-38488:1:exon

LOC102684432
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7918
gene: LOC102684432
product: zinc finger and SCAN domain-containing protein 2-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 98 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XM_015338919.1
SIO_010081: LOC102684432
subclass of: SO_0000673
so part of: LOC102684432
location: join(34386..34809,36262..38488)
location: region:34386-38488:1
so has part: feature:34386-34809:1:exon
so has part: feature:36262-38488:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:34386-34809:1:exon

position:34809:1
position: 34809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:36262-38488:1:exon

position:36262:1
position: 36262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC102684432
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7918
gene: LOC102684432
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger and SCAN domain-containing protein 2-like
translation: MANVFFTLETELHSFMEVSLKSIVDEVSEVFRNRMVKITQFVEESFGSEMAQLKKENESLKWRLQLWEKESGGGGDQGQTDRVGHTLPCEVPAEIKEEMDTKLELSGSEASGLPDAGERAPLEQQHSEEWGSCLMQETELTAAEGKEKLSEQHTESRQIVEVLDSVPMMKMESESETPGLLVSEDFTKKINNLDTNNIRQGCNELDCDSVQNHKKQLYAFNLKKQDVDPQLIDPAEQQTDVPGEENSTKLQHTVKSEDREEQQQLLQGLMIIRPCSVRVERLSLQKCFKQMNHSLVSKNFTEMYNNLDTKSIAKHVNELELVSVQGRKEEEEKELKVFSSQLIQPSEQQTHVPGKENSTELLYSEESQYREEREEQQGGLQDLIGMSSSSANMQRLSVQQWINHSSNVKNHQLTAGQRIRKTHPAPCLDNVEKMSVQPRQQQCFRQSSKLKCHQRTHTGEKPFTCKQCGKRFNQASHLKTHLRIHTGEKPFTCHHCGKSFTEAGSVKKHQLIHTGEKPFTCSQCGKSFIQAGNLKTHQLVHTREKPFFCSQCGKGFIQAANLKTHQLIHKGEKPFTCSQCGKSFIQAGNLKTHQLVHKGEKCFTCSQCGKSFIQAGNLKTHQLIHKGEKRFTCSQCGKSFIQAGNLKTHQHVHKGEKCFTCSQCGKSFIQAGNLKTHQLVHTGEKPFTCSQCGKSFIQAGNLKTHQLVHTGGKPFTCSECGKSFSVASSLKKHQLIHTGEKLLSCSQCGKSFSTVDNLKTHQLIHTGGGRFKCSHCGKSFSQPSHLKRHQLIHTGE
SIO_010081: LOC102684432
subclass of: SO_0000673
so part of: LOC102684432
location: join(34491..34809,36262..38333)
location: region:34491-38333:1
so has part: feature:34491-34809:1:exon
so has part: feature:36262-38333:1:exon

XP_015194405.1
type: Protein
SIO_000068: ncbiprotein

position:34491:1
position: 34491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38333:1
position: 38333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34491-34809:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:36262-38333:1:exon

LOC102684826
type: Gene
subclass of: SO_0000704
RO_0002162: 7918
gene: LOC102684826
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <81778..112708
location: region:81778-112708:1
so has part: feature:81778-112708:1:exon
subclass of: SO_0000010

102684826
type: Gene
SIO_000068: ncbigene

position:81778:1
position: 81778
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:112708:1
position: 112708
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:81778-112708:1:exon

LOC102684826
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7918
gene: LOC102684826
product: helicase SKI2W-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_015338922.1
SIO_010081: LOC102684826
subclass of: SO_0000673
so part of: LOC102684826
location: join(<81778..81818,82363..82459,82583..82764,87366..87522,87610..87714,87829..87919,89130..89319,89969..90179,91296..91406,91510..91709,92723..92929,112705..112708)
location: region:81778-112708:1
so has part: feature:81778-81818:1:exon
so has part: feature:82363-82459:1:exon
so has part: feature:82583-82764:1:exon
so has part: feature:87366-87522:1:exon
so has part: feature:87610-87714:1:exon
so has part: feature:87829-87919:1:exon
so has part: feature:89130-89319:1:exon
so has part: feature:89969-90179:1:exon
so has part: feature:91296-91406:1:exon
so has part: feature:91510-91709:1:exon
so has part: feature:92723-92929:1:exon
so has part: feature:112705-112708:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:81778-81818:1:exon

position:81818:1
position: 81818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:82363-82459:1:exon

position:82363:1
position: 82363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:82459:1
position: 82459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:82583-82764:1:exon

position:82583:1
position: 82583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:82764:1
position: 82764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:87366-87522:1:exon

position:87366:1
position: 87366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:87522:1
position: 87522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:87610-87714:1:exon

position:87610:1
position: 87610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:87714:1
position: 87714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:87829-87919:1:exon

position:87829:1
position: 87829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:87919:1
position: 87919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:89130-89319:1:exon

position:89130:1
position: 89130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:89319:1
position: 89319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:89969-90179:1:exon

position:89969:1
position: 89969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:90179:1
position: 90179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:91296-91406:1:exon

position:91296:1
position: 91296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:91406:1
position: 91406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:91510-91709:1:exon

position:91510:1
position: 91510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:91709:1
position: 91709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:92723-92929:1:exon

position:92723:1
position: 92723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:92929:1
position: 92929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:112705-112708:1:exon

position:112705:1
position: 112705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC102684826
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7918
gene: LOC102684826
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:89135..89137,aa:OTHER)
product: LOW QUALITY PROTEIN: helicase SKI2W-like
translation: FLLVDANGNFLTKGYYAAVEAKKERTSKHAQSFGAKGASQVTTPNQDRAVWLSLLSSLYRRDQTPVVAFTFSRSRCDENARALSSLDLTTSAEKSEIHCFFQRCISRRSVTPQVHEKRIAELKQTLSSLPPVDTEGQLADLVTYYRTVKELAEIRDTLQKAVMESVNGVKALSVGRVVVVGNAQHSNALGVVLQVSSDAANRSFTALILCERGRESGGAPNPGSKIXPWWSGGCPGVTGVLRLPPGPCGHTVQKIKPGDIAAITVKTLRVSPDRIIDDFNKRQMPRFRMDPPGQAISTATQELLRLAEAHPGGVATLDPVNDIQLKGVEVVEASMRLRVLQDGLSQFTCVHSPRFSDEFSRLQERMSFQEELDRLQFLLSDQSLSLLPEYQQRIKVLQSLSYVDAGGAVQLKGRVACELSSHELLLTELLFEGGLSSLPPEESAALLSCLVFTQKTQVTPEIVSPVLQGVQRVVAVAQRIGELQRDCGLAQSVEEFVGQYKFGLTEVVYCWARGMVRDSAPRRAHAASSSH
SIO_010081: LOC102684826
subclass of: SO_0000673
so part of: LOC102684826
location: join(<81778..81818,82363..82459,82583..82764,87366..87522,87610..87714,87829..87919,89130..89319,89969..90179,91296..91406,91510..91709,92723..92929,112705..112708)
location: region:81778-112708:1
so has part: feature:81778-81818:1:exon
so has part: feature:82363-82459:1:exon
so has part: feature:82583-82764:1:exon
so has part: feature:87366-87522:1:exon
so has part: feature:87610-87714:1:exon
so has part: feature:87829-87919:1:exon
so has part: feature:89130-89319:1:exon
so has part: feature:89969-90179:1:exon
so has part: feature:91296-91406:1:exon
so has part: feature:91510-91709:1:exon
so has part: feature:92723-92929:1:exon
so has part: feature:112705-112708:1:exon

XP_015194408.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:81778-81818:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:82363-82459:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:82583-82764:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:87366-87522:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:87610-87714:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:87829-87919:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:89130-89319:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:89969-90179:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:91296-91406:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:91510-91709:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:92723-92929:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:112705-112708:1:exon

prrt1
type: Gene
subclass of: SO_0000704
RO_0002162: 7918
gene: prrt1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 123022..125075
location: region:123022-125075:1
so has part: feature:123022-125075:1:exon
subclass of: SO_0000010

102684628
type: Gene
SIO_000068: ncbigene

position:123022:1
position: 123022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:125075:1
position: 125075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:123022-125075:1:exon

prrt1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7918
gene: prrt1
product: proline-rich transmembrane protein 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
transcript id: XM_006642865.2
SIO_010081: prrt1
subclass of: SO_0000673
so part of: prrt1
location: join(123022..123327,123439..123630,124456..125075)
location: region:123022-125075:1
so has part: feature:123022-123327:1:exon
so has part: feature:123439-123630:1:exon
so has part: feature:124456-125075:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:123022-123327:1:exon

position:123327:1
position: 123327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:123439-123630:1:exon

position:123439:1
position: 123439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:123630:1
position: 123630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:124456-125075:1:exon

position:124456:1
position: 124456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

prrt1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7918
gene: prrt1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: proline-rich transmembrane protein 1
translation: MSPPPYMQDGGPLPPPPHCNPQPPYPPAPPPHSAPEGYMQETQFHCGTLGRPQGYTVQTQGSAAPMPPAGYLQTGYPLQLQPCTAYLPVYPLGAQGQPYMQAGPAPPGVAQGQMAMQMPPGIALMEPRRPPHDYLPIAVLTTVCCFWPTGIIAIIKAVQVRTAIARGDMVSAEIASREARNFSFISLAVGIASMVLCTILTVVVIIASQHHDDEWEP
SIO_010081: prrt1
subclass of: SO_0000673
so part of: prrt1
location: join(123043..123327,123439..123630,124456..124632)
location: region:123043-124632:1
so has part: feature:123043-123327:1:exon
so has part: feature:123439-123630:1:exon
so has part: feature:124456-124632:1:exon

XP_006642928.1
type: Protein
SIO_000068: ncbiprotein

position:123043:1
position: 123043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:124632:1
position: 124632
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:123043-123327:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:123439-123630:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:124456-124632:1:exon

LOC102685023
type: Gene
subclass of: SO_0000704
RO_0002162: 7918
gene: LOC102685023
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(157990..164194)
location: region:157990-164194:-1
so has part: feature:157990-164194:-1:exon
subclass of: SO_0000010

102685023
type: Gene
SIO_000068: ncbigene

position:157990:-1
position: 157990
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:164194:-1
position: 164194
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:157990-164194:-1:exon

LOC102685023
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7918
gene: LOC102685023
product: uncharacterized LOC102685023
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_015338923.1
SIO_010081: LOC102685023
subclass of: SO_0000673
so part of: LOC102685023
location: complement(join(157990..158706,158967..159279,163775..163848,164188..164194))
location: region:157990-164194:-1
so has part: feature:164188-164194:-1:exon
so has part: feature:163775-163848:-1:exon
so has part: feature:158967-159279:-1:exon
so has part: feature:157990-158706:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:164188-164194:-1:exon

position:164188:-1
position: 164188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:163775-163848:-1:exon

position:163775:-1
position: 163775
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:163848:-1
position: 163848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:158967-159279:-1:exon

position:158967:-1
position: 158967
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:159279:-1
position: 159279
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:157990-158706:-1:exon

position:158706:-1
position: 158706
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC102685023
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7918
gene: LOC102685023
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC102685023
translation: MTSLHTETAAVWVEDGAEVDQCVMGTDELTVCVCPAGQQLFSSEGGNVSLPCDGVSSCDSVSWKYNTGSGPETLLIENGQDVTTQTDRAGRLTVLSDCSLHIHNLKKEDAGQYTCGPHSTRRKTISLSLLSVDPSLTGVNLSLYCRLYPDVDSAECNKTKNLRLTWVDEQGAELKNQRFKIRGASPCESVLTMKLRDSDRDQAWRCDLREEDELKASVQYRDSGTLYQSGLSGRSPLMTIWHCPYMFSKVFISGLINTNEQIAKLDTTLKKTALHDTIV
SIO_010081: LOC102685023
subclass of: SO_0000673
so part of: LOC102685023
location: complement(join(158261..158706,158967..159279,163775..163848,164188..164194))
location: region:158261-164194:-1
so has part: feature:164188-164194:-1:exon
so has part: feature:163775-163848:-1:exon
so has part: feature:158967-159279:-1:exon
so has part: feature:158261-158706:-1:exon

XP_015194409.1
type: Protein
SIO_000068: ncbiprotein

position:158261:-1
position: 158261
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:164188-164194:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:163775-163848:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:158967-159279:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:158261-158706:-1:exon

LOC107075907
type: Gene
subclass of: SO_0000704
RO_0002162: 7918
gene: LOC107075907
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(250182..252708)
location: region:250182-252708:-1
so has part: feature:250182-252708:-1:exon
subclass of: SO_0000010

107075907
type: Gene
SIO_000068: ncbigene

position:250182:-1
position: 250182
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:252708:-1
position: 252708
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:250182-252708:-1:exon

LOC107075907
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7918
gene: LOC107075907
product: uncharacterized LOC107075907
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_015338925.1
SIO_010081: LOC107075907
subclass of: SO_0000673
so part of: LOC107075907
location: complement(join(250182..250818,251142..251444,252008..252708))
location: region:250182-252708:-1
so has part: feature:252008-252708:-1:exon
so has part: feature:251142-251444:-1:exon
so has part: feature:250182-250818:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:252008-252708:-1:exon

position:252008:-1
position: 252008
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:251142-251444:-1:exon

position:251142:-1
position: 251142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:251444:-1
position: 251444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:250182-250818:-1:exon

position:250818:-1
position: 250818
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC107075907
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7918
gene: LOC107075907
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC107075907
translation: MNRSSIVWVFSQNPGAPIFLSKDKTITVRDPERAGRLRVGADWSLHIRSLWPQDSGLYTCVQYVSGEYHRSGTTATLYLLSLTASPSGNLRTGSMLTLRCGLDCGAGLGSCLETPEGLTMSWWRDPDLVRKVEMGRSQIRDFRTYSQLSVTLQRSDHNKNWVCALLKGTELKTYDTFTAVLTDFTQDLYSSVGGFLQLPCVDTVRLGRGDRLQWSFRRSGTITYHALFTLLGNGSRITGMEVDGDRVDMTVNSSLLIRSVQTGDSGVYLCLQNKDNLQEIHLNTLSGQEPLPSL
SIO_010081: LOC107075907
subclass of: SO_0000673
so part of: LOC107075907
location: complement(join(250481..250818,251142..251444,252008..252251))
location: region:250481-252251:-1
so has part: feature:252008-252251:-1:exon
so has part: feature:251142-251444:-1:exon
so has part: feature:250481-250818:-1:exon

XP_015194411.1
type: Protein
SIO_000068: ncbiprotein

position:250481:-1
position: 250481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:252251:-1
position: 252251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:252008-252251:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:251142-251444:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:250481-250818:-1:exon

LOC102685222
type: Gene
subclass of: SO_0000704
RO_0002162: 7918
gene: LOC102685222
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(259667..270518)
location: region:259667-270518:-1
so has part: feature:259667-270518:-1:exon
subclass of: SO_0000010

102685222
type: Gene
SIO_000068: ncbigene

position:259667:-1
position: 259667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:270518:-1
position: 270518
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:259667-270518:-1:exon

LOC102685222
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7918
gene: LOC102685222
product: uncharacterized LOC102685222
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 92% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_015338924.1
SIO_010081: LOC102685222
subclass of: SO_0000673
so part of: LOC102685222
location: complement(join(259667..260880,261287..261610,270416..270518))
location: region:259667-270518:-1
so has part: feature:270416-270518:-1:exon
so has part: feature:261287-261610:-1:exon
so has part: feature:259667-260880:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:270416-270518:-1:exon

position:270416:-1
position: 270416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:261287-261610:-1:exon

position:261287:-1
position: 261287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:261610:-1
position: 261610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:259667-260880:-1:exon

position:260880:-1
position: 260880
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC102685222
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7918
gene: LOC102685222
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC102685222
translation: MPVSWVCSPSPVREGIRTLGYPVCLHCEYLGNCKSPCALSSVTASPSGNLRTGSVLTLRCGLDCGAGLGSCSRVPEGLTVSWRRDQDLVGKVDTGRSQIRDFRTYSQLSVTLQRSDHNKNWVCVLAKGTELKTYDTFTSVLTDFTQDLYSSVGGFLQLPCVDTVRLGRGDRLQWSFRRSGTITYHALFTLLGNGSRITGMEVDGDRVDMTVNSSLLIRSVQTGDSGVYLCLQNKDNLQEIHLNTLSGQEPLPSL
SIO_010081: LOC102685222
subclass of: SO_0000673
so part of: LOC102685222
location: complement(join(260543..260880,261287..261610,270416..270518))
location: region:260543-270518:-1
so has part: feature:270416-270518:-1:exon
so has part: feature:261287-261610:-1:exon
so has part: feature:260543-260880:-1:exon

XP_015194410.1
type: Protein
SIO_000068: ncbiprotein

position:260543:-1
position: 260543
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:270416-270518:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:261287-261610:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:260543-260880:-1:exon