Polyodon spathula mitochondrion, complete genome.
type: Entry
definition: Polyodon spathula mitochondrion, complete genome.
sequence version: NC_004419.1
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_004419.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Polyodon spathula (Mississippi paddlefish)
organism: Polyodon spathula
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Polyodontidae; Polyodon.
reference: 1
references: 12470943
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence was derived from AP004353.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16512
topology: circular
so has quality: SO_0000988
location: 1..16512
location: region:1-16512:1
RO_0002162: 7913

NC_004419
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Basal actinopterygian relationships: a mitogenomic perspective on the phylogeny of the 'ancient fish'
author: Inoue, J.G.
author: Miya, M.
author: Tsukamoto, K.
author: Nishida, M.
journal: Mol. Phylogenet. Evol.
volume: 26
issue: 1
pages: 110-120
year: 2003
pubmed: 12470943

12470943
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (18-NOV-2002) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Inoue, J.G.
journal: Submitted (14-NOV-2001) Jun Guts Inoue, University of Tokyo, Ocean Research Institute, 1-15-1 Minamidai, Nakano-ku, Tokyo 164-8639, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16512:1
position: 16512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16512:1:source
so part of: sequence
organism: Polyodon spathula
organelle: mitochondrion
mol type: genomic DNA

7913
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7913
product: tRNA-Phe
so part of: sequence
location: 1..68
location: region:1-68:1
so has part: feature:1-68:1:region

position:68:1
position: 68
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-68:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 7913
product: s-rRNA
note: 12S ribosomal RNA
so part of: sequence
location: 69..1027
location: region:69-1027:1
so has part: feature:69-1027:1:region

position:69:1
position: 69
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1027:1
position: 1027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:69-1027:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7913
product: tRNA-Val
so part of: sequence
location: 1028..1098
location: region:1028-1098:1
so has part: feature:1028-1098:1:region

position:1028:1
position: 1028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1098:1
position: 1098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1028-1098:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 7913
product: l-rRNA
note: 16S ribosomal RNA
so part of: sequence
location: 1099..2795
location: region:1099-2795:1
so has part: feature:1099-2795:1:region

position:1099:1
position: 1099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2795:1
position: 2795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1099-2795:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7913
product: tRNA-Leu
codon recognized: UUR
so part of: sequence
location: 2796..2870
location: region:2796-2870:1
so has part: feature:2796-2870:1:region

position:2796:1
position: 2796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2870:1
position: 2870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2796-2870:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 7913
gene: ND1
so part of: sequence
location: 2871..3845
location: region:2871-3845:1
so has part: feature:2871-3845:1:exon
subclass of: SO_0000010

805407
type: Gene
SIO_000068: ncbigene

position:2871:1
position: 2871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3845:1
position: 3845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2871-3845:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7913
gene: ND1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MTSHLLTYLINPLAYIIPILLAVAFLTLIERKVLGYMQLRKGPNIVGPYGLLQPIADGIKLFIKEPVPPTTASPLLFLATPILALTLALTLWMPLPMPYSIADLNLGILFILALSSLAVYSILGSGWASTSKYALIGALRAVAQTISYEVSLGLILLCMIVFTGNFTLHTFNTAQEAIWLLAPGWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSTILFLGAYHNPMFPEMTTLNLMIKASMLSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLALVLWHISLPIASAGLPPQI
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2871..3845
location: region:2871-3845:1
so has part: feature:2871-3845:1:exon

NP_740231.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2871-3845:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7913
product: tRNA-Ile
so part of: sequence
location: 3855..3925
location: region:3855-3925:1
so has part: feature:3855-3925:1:region

position:3855:1
position: 3855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3925:1
position: 3925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3855-3925:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7913
product: tRNA-Gln
so part of: sequence
location: complement(3925..3995)
location: region:3925-3995:-1
so has part: feature:3925-3995:-1:region

position:3925:-1
position: 3925
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3995:-1
position: 3995
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3925-3995:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7913
product: tRNA-Met
so part of: sequence
location: 3995..4064
location: region:3995-4064:1
so has part: feature:3995-4064:1:region

position:3995:1
position: 3995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4064:1
position: 4064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3995-4064:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 7913
gene: ND2
so part of: sequence
location: 4065..5110
location: region:4065-5110:1
so has part: feature:4065-5110:1:exon
subclass of: SO_0000010

805405
type: Gene
SIO_000068: ncbigene

position:4065:1
position: 4065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5110:1
position: 5110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4065-5110:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7913
gene: ND2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:5109..5110,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPYVFAILLSSLGIGTTLTFASSHWLLAWMGLEINTLAIIPLMAQQHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGEWNIQEMSNPTALTLITMALALKIGLAPIHYWLPEVLQGLDLTTGLILSTWQKLAPFALIYQISPMMNPTLMITLGLASTIVGGWGGLNQTQLRKILAYSSIAHLGWMMVIMQYSPSLAMLNLTLYIIMTTATFLTFKNVTSTKLNALALTWSKTPMMTTMAMMTLLSLGGLPPLTGFMPKWLILQELTKQNLPLTASIMAMAALLSLFFYLRMCYAMTLTISPNTNNNTSTWRQKSSQTTMTLSITTLLALTLLPTTPTIMALMT
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 4065..5110
location: region:4065-5110:1
so has part: feature:4065-5110:1:exon

NP_740232.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4065-5110:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7913
product: tRNA-Trp
so part of: sequence
location: 5111..5182
location: region:5111-5182:1
so has part: feature:5111-5182:1:region

position:5111:1
position: 5111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5182:1
position: 5182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5111-5182:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7913
product: tRNA-Ala
so part of: sequence
location: complement(5184..5252)
location: region:5184-5252:-1
so has part: feature:5184-5252:-1:region

position:5184:-1
position: 5184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5252:-1
position: 5252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5184-5252:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7913
product: tRNA-Asn
so part of: sequence
location: complement(5255..5327)
location: region:5255-5327:-1
so has part: feature:5255-5327:-1:region

position:5255:-1
position: 5255
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5327:-1
position: 5327
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5255-5327:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7913
product: tRNA-Cys
so part of: sequence
location: complement(5361..5427)
location: region:5361-5427:-1
so has part: feature:5361-5427:-1:region

position:5361:-1
position: 5361
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5427:-1
position: 5427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5361-5427:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7913
product: tRNA-Tyr
so part of: sequence
location: complement(5428..5498)
location: region:5428-5498:-1
so has part: feature:5428-5498:-1:region

position:5428:-1
position: 5428
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5498:-1
position: 5498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5428-5498:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 7913
gene: COX1
so part of: sequence
location: 5500..7053
location: region:5500-7053:1
so has part: feature:5500-7053:1:exon
subclass of: SO_0000010

805409
type: Gene
SIO_000068: ncbigene

position:5500:1
position: 5500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7053:1
position: 7053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5500-7053:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7913
gene: COX1
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MAITRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAVFQYQTPLFVWSVLVTAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVAYYAGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGSIKWDTPLLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGAFVHWFPLFTGYTLHSTWSKIHFAVMFVGVNLTFFPQHFLGLAGMPRRYSDYPDAYALWNTVSSVGSLISLIAVIMFLFILWEAFAAKREVLSVELTATNVEWLHGCPPPYHTYEEPAFVQVQSTN
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5500..7053
location: region:5500-7053:1
so has part: feature:5500-7053:1:exon

NP_740233.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5500-7053:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7913
product: tRNA-Ser
codon recognized: UCN
so part of: sequence
location: complement(7057..7127)
location: region:7057-7127:-1
so has part: feature:7057-7127:-1:region

position:7057:-1
position: 7057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7127:-1
position: 7127
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7057-7127:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7913
product: tRNA-Asp
so part of: sequence
location: 7136..7207
location: region:7136-7207:1
so has part: feature:7136-7207:1:region

position:7136:1
position: 7136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7207:1
position: 7207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7136-7207:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 7913
gene: COX2
so part of: sequence
location: 7222..7920
location: region:7222-7920:1
so has part: feature:7222-7920:1:exon
subclass of: SO_0000010

805412
type: Gene
SIO_000068: ncbigene

position:7222:1
position: 7222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7920:1
position: 7920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7222-7920:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7913
gene: COX2
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHPSQLGFQDAASPVMEELLHFHDHTLMIVFLISTLVLYIIVAMVSTKLTNKYVLDSQEIEIVWTVLPAVILILIALPSLRILYLMDEINDPHLTIKAMGHQWYWSYEYTDYENLGFDSYMIPTQDLTPGQFRLLETDHRMVVPMESPIRVLVSAEDVLHAWAVPALGIKMDAVPGRLNQTAFITSRPGVYYGQCSEICGANHSFMPIVVEAVPLEHFENWSSLMLEESSP
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7222..7920
location: region:7222-7920:1
so has part: feature:7222-7920:1:exon

NP_740234.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7222-7920:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7913
product: tRNA-Lys
so part of: sequence
location: 7910..7987
location: region:7910-7987:1
so has part: feature:7910-7987:1:region

position:7910:1
position: 7910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7987:1
position: 7987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7910-7987:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 7913
gene: ATP8
so part of: sequence
location: 7989..8156
location: region:7989-8156:1
so has part: feature:7989-8156:1:exon
subclass of: SO_0000010

805410
type: Gene
SIO_000068: ncbigene

position:7989:1
position: 7989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8156:1
position: 8156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7989-8156:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7913
gene: ATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNPSPWFMILVFSWLVFLIILPPKVLSHTFTNEPTHKNAEKIKPEPWTWPWS
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7989..8156
location: region:7989-8156:1
so has part: feature:7989-8156:1:exon

NP_740235.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7989-8156:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 7913
gene: ATP6
so part of: sequence
location: 8147..8829
location: region:8147-8829:1
so has part: feature:8147-8829:1:exon
subclass of: SO_0000010

805411
type: Gene
SIO_000068: ncbigene

position:8147:1
position: 8147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8829:1
position: 8829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8147-8829:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7913
gene: ATP6
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:8828..8829,aa:TERM)
transl table: 2
product: ATP synthase F0 subunit 6
translation: MILSFFDQFMSPTHLGIPLIALALSLPWILIPTPTNRWLNNRLLTLQAWFINRFTQQLMLPINLGGHKWAVLLTALMLLLITLNLLGLLPYTFTPTTQLSLNMGFAVPLWLATVIIGMRNQPTAALGHLLPEGTPVPLIPVLIVIETISLFIRPLALGVRLTANLTAGHLLIQLIATAAFVLLPMMPTVAILTSVVLFLLTLLEVAVAMIQAYVFVLLLSLYLQENV
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 8147..8829
location: region:8147-8829:1
so has part: feature:8147-8829:1:exon

NP_740236.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8147-8829:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 7913
gene: COX3
so part of: sequence
location: 8830..9614
location: region:8830-9614:1
so has part: feature:8830-9614:1:exon
subclass of: SO_0000010

805408
type: Gene
SIO_000068: ncbigene

position:8830:1
position: 8830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9614:1
position: 9614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8830-9614:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7913
gene: COX3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9613..9614,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MARQAHAYHMVDPSPWPLTGAVAALLMTSGLAVWFHFNSTVLMTMGLALLLLTMYQWWRDIIREGTFQGHHTPPVQKGLRYGMILFITSEVFFFLGFFWAFYHSSLAPTPELGGCWPPTGIIPLDPFEVPLLNTAVLLASGVTVTWAHHSIMERERKQTIQALTLTILLGFYFTALQAMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQIQYHFTSEHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8830..9614
location: region:8830-9614:1
so has part: feature:8830-9614:1:exon

NP_740237.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8830-9614:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7913
product: tRNA-Gly
so part of: sequence
location: 9615..9687
location: region:9615-9687:1
so has part: feature:9615-9687:1:region

position:9615:1
position: 9615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9687:1
position: 9687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9615-9687:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 7913
gene: ND3
so part of: sequence
location: 9688..10036
location: region:9688-10036:1
so has part: feature:9688-10036:1:exon
subclass of: SO_0000010

805403
type: Gene
SIO_000068: ncbigene

position:9688:1
position: 9688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10036:1
position: 10036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9688-10036:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7913
gene: ND3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:10036,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNLAMTILAIAIALSCILATVAFWLPQMNPDSEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLASPTTALLWAMAILVLLTLGLIYEWTQGGLEWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9688..10036
location: region:9688-10036:1
so has part: feature:9688-10036:1:exon

NP_740238.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9688-10036:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7913
product: tRNA-Arg
so part of: sequence
location: 10037..10106
location: region:10037-10106:1
so has part: feature:10037-10106:1:region

position:10037:1
position: 10037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10106:1
position: 10106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10037-10106:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 7913
gene: ND4L
so part of: sequence
location: 10107..10403
location: region:10107-10403:1
so has part: feature:10107-10403:1:exon
subclass of: SO_0000010

805413
type: Gene
SIO_000068: ncbigene

position:10107:1
position: 10107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10403:1
position: 10403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10107-10403:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7913
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MTPVHFSFSSAFMLGLMGLTFHRTHLLSALLCLEGMMLSLFIALSLWSLQLESTTHATAPMLLLAFSACEAGAGLALLVAATRTHGTDHLQNLNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 10107..10403
location: region:10107-10403:1
so has part: feature:10107-10403:1:exon

NP_740239.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10107-10403:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 7913
gene: ND4
so part of: sequence
location: 10397..11777
location: region:10397-11777:1
so has part: feature:10397-11777:1:exon
subclass of: SO_0000010

805402
type: Gene
SIO_000068: ncbigene

position:10397:1
position: 10397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11777:1
position: 11777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10397-11777:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7913
gene: ND4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11777,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKILIPTLMLFPTTWLATPKWLWATTTAQALIIATASLTLLNWSSETGWTSTNPYLGTDPLSTPLLVLTCWLLPLMILASQNHISPEPVSRQRTYITLLVSLQLFLIMAFGATEIILFYIMFETTLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLILQKEMGSLSMLIIQYMQPAPLCTWADKIWWAACLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAAVLLKLGGYGMMRMIIMLEPASKNLAYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVVAGILIQTPWGFTGAIILMIAHGLASSALFCLANTNYERLHSRTLLLARGMQAILPLMAAWWFIANLANLALPPLPNLMGELIIITSMFNWSSWTIILTGTGTLITASYSLYMYLMTQRGPVTTLITAIEPSHTREHLLMALHLIPIIMLTLKPELMWGWCF
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10397..11777
location: region:10397-11777:1
so has part: feature:10397-11777:1:exon

NP_740240.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10397-11777:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7913
product: tRNA-His
so part of: sequence
location: 11778..11846
location: region:11778-11846:1
so has part: feature:11778-11846:1:region

position:11778:1
position: 11778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11846:1
position: 11846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11778-11846:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7913
product: tRNA-Ser
codon recognized: AGY
so part of: sequence
location: 11847..11914
location: region:11847-11914:1
so has part: feature:11847-11914:1:region

position:11847:1
position: 11847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11914:1
position: 11914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11847-11914:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7913
product: tRNA-Leu
codon recognized: CUN
so part of: sequence
location: 11915..11987
location: region:11915-11987:1
so has part: feature:11915-11987:1:region

position:11915:1
position: 11915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11987:1
position: 11987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11915-11987:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 7913
gene: ND5
so part of: sequence
location: 11988..13829
location: region:11988-13829:1
so has part: feature:11988-13829:1:exon
subclass of: SO_0000010

805414
type: Gene
SIO_000068: ncbigene

position:11988:1
position: 11988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13829:1
position: 13829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11988-13829:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7913
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MHPPTLIFNSTLLIILFLLTYPLIVSLNPSPLNKKWATTHVKTAVQTAFYISLLPLAMFFDQGMETITTNWHWMNIATFNINVSFKFDQYSIIFTPVALYVTWSILEFASWYMHSDPNMNRFFKYLLLFLIAMITLVTANNMFQLFIGWEGVGIMSFLLIGWWYGRADANTAALQAVIYNRVGDIGLILSMAWFAMNMNTWEIQQMFASSQDNPATLPLMGLILAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRLHPLMEHNQLALTTCLCLGATTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLHTMLPFTSTCLTIGSLALTGMPFLSGFFSKDAIIEALNTSHLNAWALTLTLIATSFTAVYSFRVIFFASMGSPRFLPLSPLNENNPTVINPIKRLAWGSILAGLFITSNFLPTKTPIMTMPTTLKLSALLVTTLGLLMALELTNLTNKQLKITPTLPLHNFSNMLGYFPSIIHRLAPKIKLNLGQTMATHLIDQTWLEKMGPKGVTTNQIPMIKATNNIQQGLIKTYLTIFFLTTALSILLITLI
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11988..13829
location: region:11988-13829:1
so has part: feature:11988-13829:1:exon

NP_740241.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11988-13829:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 7913
gene: ND6
so part of: sequence
location: complement(13826..14347)
location: region:13826-14347:-1
so has part: feature:13826-14347:-1:exon
subclass of: SO_0000010

805404
type: Gene
SIO_000068: ncbigene

position:13826:-1
position: 13826
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14347:-1
position: 14347
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13826-14347:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7913
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MFYFTFLVLVGLVLGLVGVASNPAPYFAALGLVVAAAVGCGILVGHGGSFLSLILFLIYLGGMLVVFAYSAALAAEPYPETWGDWSVLFYVVVYVVGVLIVGTLVSNDWYSCSWVVVDEFKDLSLLRGDFSGVAFMYSLGGFMLMVSGWVLLLTLFVVLELTRGLSRGALRAV
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13826..14347)
location: region:13826-14347:-1
so has part: feature:13826-14347:-1:exon

NP_740242.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13826-14347:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7913
product: tRNA-Glu
so part of: sequence
location: complement(14348..14417)
location: region:14348-14417:-1
so has part: feature:14348-14417:-1:region

position:14348:-1
position: 14348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14417:-1
position: 14417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14348-14417:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 7913
gene: CYTB
so part of: sequence
location: 14420..15560
location: region:14420-15560:1
so has part: feature:14420-15560:1:exon
subclass of: SO_0000010

805406
type: Gene
SIO_000068: ncbigene

position:14420:1
position: 14420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15560:1
position: 15560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14420-15560:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7913
gene: CYTB
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:15560,aa:TERM)
transl table: 2
product: cytochrome b
translation: MANIRKTHPLLKIINGAFIDLPAPSNISVWWNSGSLLGLCLITQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLYKETWNIGVVLLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLLFLHQTGSNNPTGLNSDADKVPFHPYFSYKDLLGFILMLIGLTAIALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPILHTSKQRGNTFRPLSQILFWTLVADMLVLTWIGGQPVEHPFVLIGQVASTIYFALFLVALPLTGWLENKILNWN
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14420..15560
location: region:14420-15560:1
so has part: feature:14420-15560:1:exon

NP_740243.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14420-15560:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7913
product: tRNA-Thr
so part of: sequence
location: 15561..15633
location: region:15561-15633:1
so has part: feature:15561-15633:1:region

position:15561:1
position: 15561
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15633:1
position: 15633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15561-15633:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7913
product: tRNA-Pro
so part of: sequence
location: complement(15636..15705)
location: region:15636-15705:-1
so has part: feature:15636-15705:-1:region

position:15636:-1
position: 15636
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15705:-1
position: 15705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15636-15705:-1:region

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 7913
note: control region
so part of: sequence
location: 15706..16512
location: region:15706-16512:1
so has part: feature:15706-16512:1:region

position:15706:1
position: 15706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15706-16512:1:region