Acipenser ruthenus isolate Gen_M01 chromosome 60, ASM1064508v1, whole genome shotgun sequence.
type: Entry
definition: Acipenser ruthenus isolate Gen_M01 chromosome 60, ASM1064508v1, whole genome shotgun sequence.
sequence version: NC_048382.1
sequence date: 2020-06-05
sequence: sequence
division: CON
label: NC_048382.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA635364
dblink: SAMN12612932
keyword: WGS
keyword: RefSeq
source: Acipenser ruthenus (sterlet)
organism: Acipenser ruthenus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser.
reference: 1
references: 32231327
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM021310.1.\nAssembly name: ASM1064508v1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the University of Wuerzburg on\n2020/02/19. The original whole-genome shotgun project has the\naccession VTUV00000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: University of Wuerzburg\nAssembly Method :: SmartDeNovo v. May-2017; 3D-DNA v. 180114\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 42.0x\nSequencing Technology :: Illumina NovaSeq; PacBio; Hi-C\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Acipenser ruthenus Annotation\n Release 101\nAnnotation Version :: 101\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.4\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 487542
topology: linear
so has quality: SO_0000987
location: 1..487542
location: region:1-487542:1
RO_0002162: 7906

NC_048382
type: RefSeq
SIO_000068: refseq

PRJNA635364
type: BioProject
SIO_000068: bioproject

SAMN12612932
type: BioSample
SIO_000068: biosample

1
title: The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization
author: Du, K.
author: Stock, M.
author: Kneitz, S.
author: Klopp, C.
author: Woltering, J.M.
author: Adolfi, M.C.
author: Feron, R.
author: Prokopov, D.
author: Makunin, A.
author: Kichigin, I.
author: Schmidt, C.
author: Fischer, P.
author: Kuhl, H.
author: Wuertz, S.
author: Gessner, J.
author: Kloas, W.
author: Cabau, C.
author: Iampietro, C.
author: Parrinello, H.
author: Tomlinson, C.
author: Journot, L.
author: Postlethwait, J.H.
author: Braasch, I.
author: Trifonov, V.
author: Warren, W.C.
author: Meyer, A.
author: Guiguen, Y.
author: Schartl, M.
journal: Nat Ecol Evol (2020)
pubmed: 32231327

32231327
type: PubMed
SIO_000068: pubmed

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:487542:1
position: 487542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-487542:1:source
so part of: sequence
organism: Acipenser ruthenus
mol type: genomic DNA
isolate: Gen_M01
isolation source: water
chromosome: 60
tissue type: testis, blood
country: Germany: IGB
lat lon: 52.448940 N 13.648750 E
collection date: 2018

7906
type: Taxonomy
SIO_000068: taxonomy

LOC117401641
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: LOC117401641
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 27625..35321
location: region:27625-35321:1
so has part: feature:27625-35321:1:exon
subclass of: SO_0000010

117401641
type: Gene
SIO_000068: ncbigene

position:27625:1
position: 27625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35321:1
position: 35321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27625-35321:1:exon

LOC117401641
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7906
gene: LOC117401641
product: neural cell adhesion molecule L1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_034915682.1
SIO_010081: LOC117401641
subclass of: SO_0000673
so part of: LOC117401641
location: join(27625..27833,28016..28131,33489..33503,35189..35321)
location: region:27625-35321:1
so has part: feature:27625-27833:1:exon
so has part: feature:28016-28131:1:exon
so has part: feature:33489-33503:1:exon
so has part: feature:35189-35321:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:27625-27833:1:exon

position:27833:1
position: 27833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:28016-28131:1:exon

position:28016:1
position: 28016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28131:1
position: 28131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:33489-33503:1:exon

position:33489:1
position: 33489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33503:1
position: 33503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:35189-35321:1:exon

position:35189:1
position: 35189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117401641
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7906
gene: LOC117401641
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: neural cell adhesion molecule L1-like
translation: MDYKRLGGGGPRIWALALLQVLVLCVSRTQAALQIPLDYKQENLMTPPVITEQSPRTQAVYSSDEIVLKCEATAQPQPT
SIO_010081: LOC117401641
subclass of: SO_0000673
so part of: LOC117401641
location: join(28017..28131,33489..33503,35189..35298)
location: region:28017-35298:1
so has part: feature:28017-28131:1:exon
so has part: feature:33489-33503:1:exon
so has part: feature:35189-35298:1:exon

XP_034771573.1
type: Protein
SIO_000068: ncbiprotein

position:28017:1
position: 28017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35298:1
position: 35298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28017-28131:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:33489-33503:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:35189-35298:1:exon

trnat-ugu
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: trnat-ugu
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(70885..70958)
location: region:70885-70958:-1
so has part: feature:70885-70958:-1:exon
subclass of: SO_0000663

117968127
type: Gene
SIO_000068: ncbigene

position:70885:-1
position: 70885
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:70958:-1
position: 70958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:70885-70958:-1:exon

trnat-ugu
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
gene: trnat-ugu
product: tRNA-Thr
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA threonine (anticodon UGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(70922..70924),aa:Thr,seq:tgt)
SIO_010081: trnat-ugu
subclass of: SO_0000673
so part of: trnat-ugu
location: complement(70885..70958)
location: region:70885-70958:-1
so has part: feature:70885-70958:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:70885-70958:-1:exon

trnar-ucu
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: trnar-ucu
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 73166..73256
location: region:73166-73256:1
so has part: feature:73166-73256:1:exon
subclass of: SO_0000663

117399209
type: Gene
SIO_000068: ncbigene

position:73166:1
position: 73166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:73256:1
position: 73256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:73166-73256:1:exon

trnar-ucu
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
gene: trnar-ucu
product: tRNA-Arg
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA arginine (anticodon UCU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:73199..73201,aa:Arg,seq:tct)
SIO_010081: trnar-ucu
subclass of: SO_0000673
so part of: trnar-ucu
location: join(73166..73202,73221..73256)
location: region:73166-73256:1
so has part: feature:73166-73202:1:exon
so has part: feature:73221-73256:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:73166-73202:1:exon

position:73202:1
position: 73202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:73221-73256:1:exon

position:73221:1
position: 73221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

trnav-uac
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: trnav-uac
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(73353..73426)
location: region:73353-73426:-1
so has part: feature:73353-73426:-1:exon
subclass of: SO_0000663

117968128
type: Gene
SIO_000068: ncbigene

position:73353:-1
position: 73353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:73426:-1
position: 73426
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:73353-73426:-1:exon

trnav-uac
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
gene: trnav-uac
product: tRNA-Val
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA valine (anticodon UAC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(73390..73392),aa:Val,seq:tac)
SIO_010081: trnav-uac
subclass of: SO_0000673
so part of: trnav-uac
location: complement(73353..73426)
location: region:73353-73426:-1
so has part: feature:73353-73426:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:73353-73426:-1:exon

trnaa-cgc
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: trnaa-cgc
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(74196..74267)
location: region:74196-74267:-1
so has part: feature:74196-74267:-1:exon
subclass of: SO_0000663

117398937
type: Gene
SIO_000068: ncbigene

position:74196:-1
position: 74196
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:74267:-1
position: 74267
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:74196-74267:-1:exon

trnaa-cgc
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
gene: trnaa-cgc
product: tRNA-Ala
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA alanine (anticodon CGC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(74233..74235),aa:Ala,seq:cgc)
SIO_010081: trnaa-cgc
subclass of: SO_0000673
so part of: trnaa-cgc
location: complement(74196..74267)
location: region:74196-74267:-1
so has part: feature:74196-74267:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:74196-74267:-1:exon

trnat-ugu
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: trnat-ugu
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(74721..74794)
location: region:74721-74794:-1
so has part: feature:74721-74794:-1:exon
subclass of: SO_0000663

117968129
type: Gene
SIO_000068: ncbigene

position:74721:-1
position: 74721
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:74794:-1
position: 74794
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:74721-74794:-1:exon

trnat-ugu
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
gene: trnat-ugu
product: tRNA-Thr
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA threonine (anticodon UGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(74758..74760),aa:Thr,seq:tgt)
SIO_010081: trnat-ugu
subclass of: SO_0000673
so part of: trnat-ugu
location: complement(74721..74794)
location: region:74721-74794:-1
so has part: feature:74721-74794:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:74721-74794:-1:exon

trnaa-cgc
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: trnaa-cgc
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(76830..76901)
location: region:76830-76901:-1
so has part: feature:76830-76901:-1:exon
subclass of: SO_0000663

117398915
type: Gene
SIO_000068: ncbigene

position:76830:-1
position: 76830
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:76901:-1
position: 76901
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:76830-76901:-1:exon

trnaa-cgc
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
gene: trnaa-cgc
product: tRNA-Ala
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA alanine (anticodon CGC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(76867..76869),aa:Ala,seq:cgc)
SIO_010081: trnaa-cgc
subclass of: SO_0000673
so part of: trnaa-cgc
location: complement(76830..76901)
location: region:76830-76901:-1
so has part: feature:76830-76901:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:76830-76901:-1:exon

trnat-ugu
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: trnat-ugu
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(77354..77427)
location: region:77354-77427:-1
so has part: feature:77354-77427:-1:exon
subclass of: SO_0000663

117968131
type: Gene
SIO_000068: ncbigene

position:77354:-1
position: 77354
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:77427:-1
position: 77427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:77354-77427:-1:exon

trnat-ugu
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
gene: trnat-ugu
product: tRNA-Thr
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA threonine (anticodon UGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(77391..77393),aa:Thr,seq:tgt)
SIO_010081: trnat-ugu
subclass of: SO_0000673
so part of: trnat-ugu
location: complement(77354..77427)
location: region:77354-77427:-1
so has part: feature:77354-77427:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:77354-77427:-1:exon

trnaa-cgc
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: trnaa-cgc
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(78157..78228)
location: region:78157-78228:-1
so has part: feature:78157-78228:-1:exon
subclass of: SO_0000663

117398908
type: Gene
SIO_000068: ncbigene

position:78157:-1
position: 78157
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:78228:-1
position: 78228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:78157-78228:-1:exon

trnaa-cgc
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
gene: trnaa-cgc
product: tRNA-Ala
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA alanine (anticodon CGC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(78194..78196),aa:Ala,seq:cgc)
SIO_010081: trnaa-cgc
subclass of: SO_0000673
so part of: trnaa-cgc
location: complement(78157..78228)
location: region:78157-78228:-1
so has part: feature:78157-78228:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:78157-78228:-1:exon

trnat-ugu
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: trnat-ugu
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(78681..78754)
location: region:78681-78754:-1
so has part: feature:78681-78754:-1:exon
subclass of: SO_0000663

117968132
type: Gene
SIO_000068: ncbigene

position:78681:-1
position: 78681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:78754:-1
position: 78754
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:78681-78754:-1:exon

trnat-ugu
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
gene: trnat-ugu
product: tRNA-Thr
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA threonine (anticodon UGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(78718..78720),aa:Thr,seq:tgt)
SIO_010081: trnat-ugu
subclass of: SO_0000673
so part of: trnat-ugu
location: complement(78681..78754)
location: region:78681-78754:-1
so has part: feature:78681-78754:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:78681-78754:-1:exon

trnaa-cgc
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: trnaa-cgc
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(79470..79541)
location: region:79470-79541:-1
so has part: feature:79470-79541:-1:exon
subclass of: SO_0000663

117398901
type: Gene
SIO_000068: ncbigene

position:79470:-1
position: 79470
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:79541:-1
position: 79541
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:79470-79541:-1:exon

trnaa-cgc
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
gene: trnaa-cgc
product: tRNA-Ala
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA alanine (anticodon CGC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(79507..79509),aa:Ala,seq:cgc)
SIO_010081: trnaa-cgc
subclass of: SO_0000673
so part of: trnaa-cgc
location: complement(79470..79541)
location: region:79470-79541:-1
so has part: feature:79470-79541:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:79470-79541:-1:exon

trnat-ugu
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: trnat-ugu
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(79995..80068)
location: region:79995-80068:-1
so has part: feature:79995-80068:-1:exon
subclass of: SO_0000663

117968133
type: Gene
SIO_000068: ncbigene

position:79995:-1
position: 79995
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:80068:-1
position: 80068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:79995-80068:-1:exon

trnat-ugu
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
gene: trnat-ugu
product: tRNA-Thr
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA threonine (anticodon UGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(80032..80034),aa:Thr,seq:tgt)
SIO_010081: trnat-ugu
subclass of: SO_0000673
so part of: trnat-ugu
location: complement(79995..80068)
location: region:79995-80068:-1
so has part: feature:79995-80068:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:79995-80068:-1:exon

trnaa-cgc
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: trnaa-cgc
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(80786..80857)
location: region:80786-80857:-1
so has part: feature:80786-80857:-1:exon
subclass of: SO_0000663

117398892
type: Gene
SIO_000068: ncbigene

position:80786:-1
position: 80786
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:80857:-1
position: 80857
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:80786-80857:-1:exon

trnaa-cgc
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
gene: trnaa-cgc
product: tRNA-Ala
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA alanine (anticodon CGC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(80823..80825),aa:Ala,seq:cgc)
SIO_010081: trnaa-cgc
subclass of: SO_0000673
so part of: trnaa-cgc
location: complement(80786..80857)
location: region:80786-80857:-1
so has part: feature:80786-80857:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:80786-80857:-1:exon

trnat-ugu
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: trnat-ugu
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(81310..81383)
location: region:81310-81383:-1
so has part: feature:81310-81383:-1:exon
subclass of: SO_0000663

117968134
type: Gene
SIO_000068: ncbigene

position:81310:-1
position: 81310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:81383:-1
position: 81383
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:81310-81383:-1:exon

trnat-ugu
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
gene: trnat-ugu
product: tRNA-Thr
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA threonine (anticodon UGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(81347..81349),aa:Thr,seq:tgt)
SIO_010081: trnat-ugu
subclass of: SO_0000673
so part of: trnat-ugu
location: complement(81310..81383)
location: region:81310-81383:-1
so has part: feature:81310-81383:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:81310-81383:-1:exon

trnaa-cgc
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: trnaa-cgc
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(82098..82169)
location: region:82098-82169:-1
so has part: feature:82098-82169:-1:exon
subclass of: SO_0000663

117398886
type: Gene
SIO_000068: ncbigene

position:82098:-1
position: 82098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:82169:-1
position: 82169
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:82098-82169:-1:exon

trnaa-cgc
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
gene: trnaa-cgc
product: tRNA-Ala
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA alanine (anticodon CGC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(82135..82137),aa:Ala,seq:cgc)
SIO_010081: trnaa-cgc
subclass of: SO_0000673
so part of: trnaa-cgc
location: complement(82098..82169)
location: region:82098-82169:-1
so has part: feature:82098-82169:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:82098-82169:-1:exon

trnat-ugu
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: trnat-ugu
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(82624..82697)
location: region:82624-82697:-1
so has part: feature:82624-82697:-1:exon
subclass of: SO_0000663

117968135
type: Gene
SIO_000068: ncbigene

position:82624:-1
position: 82624
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:82697:-1
position: 82697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:82624-82697:-1:exon

trnat-ugu
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
gene: trnat-ugu
product: tRNA-Thr
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA threonine (anticodon UGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(82661..82663),aa:Thr,seq:tgt)
SIO_010081: trnat-ugu
subclass of: SO_0000673
so part of: trnat-ugu
location: complement(82624..82697)
location: region:82624-82697:-1
so has part: feature:82624-82697:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:82624-82697:-1:exon

trnaa-cgc
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: trnaa-cgc
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(87226..87297)
location: region:87226-87297:-1
so has part: feature:87226-87297:-1:exon
subclass of: SO_0000663

117398879
type: Gene
SIO_000068: ncbigene

position:87226:-1
position: 87226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:87297:-1
position: 87297
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:87226-87297:-1:exon

trnaa-cgc
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
gene: trnaa-cgc
product: tRNA-Ala
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA alanine (anticodon CGC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(87263..87265),aa:Ala,seq:cgc)
SIO_010081: trnaa-cgc
subclass of: SO_0000673
so part of: trnaa-cgc
location: complement(87226..87297)
location: region:87226-87297:-1
so has part: feature:87226-87297:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:87226-87297:-1:exon

trnar-ucu
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: trnar-ucu
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 87563..87653
location: region:87563-87653:1
so has part: feature:87563-87653:1:exon
subclass of: SO_0000663

117968130
type: Gene
SIO_000068: ncbigene

position:87563:1
position: 87563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:87653:1
position: 87653
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:87563-87653:1:exon

trnar-ucu
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
gene: trnar-ucu
product: tRNA-Arg
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA arginine (anticodon UCU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:87596..87598,aa:Arg,seq:tct)
SIO_010081: trnar-ucu
subclass of: SO_0000673
so part of: trnar-ucu
location: join(87563..87599,87618..87653)
location: region:87563-87653:1
so has part: feature:87563-87599:1:exon
so has part: feature:87618-87653:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:87563-87599:1:exon

position:87599:1
position: 87599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:87618-87653:1:exon

position:87618:1
position: 87618
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

trnat-ugu
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: trnat-ugu
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(87749..87822)
location: region:87749-87822:-1
so has part: feature:87749-87822:-1:exon
subclass of: SO_0000663

117398872
type: Gene
SIO_000068: ncbigene

position:87749:-1
position: 87749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:87822:-1
position: 87822
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:87749-87822:-1:exon

trnat-ugu
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
gene: trnat-ugu
product: tRNA-Thr
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA threonine (anticodon UGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(87786..87788),aa:Thr,seq:tgt)
SIO_010081: trnat-ugu
subclass of: SO_0000673
so part of: trnat-ugu
location: complement(87749..87822)
location: region:87749-87822:-1
so has part: feature:87749-87822:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:87749-87822:-1:exon

trnaa-cgc
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: trnaa-cgc
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(100889..100960)
location: region:100889-100960:-1
so has part: feature:100889-100960:-1:exon
subclass of: SO_0000663

117398867
type: Gene
SIO_000068: ncbigene

position:100889:-1
position: 100889
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:100960:-1
position: 100960
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:100889-100960:-1:exon

trnaa-cgc
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
gene: trnaa-cgc
product: tRNA-Ala
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA alanine (anticodon CGC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(100926..100928),aa:Ala,seq:cgc)
SIO_010081: trnaa-cgc
subclass of: SO_0000673
so part of: trnaa-cgc
location: complement(100889..100960)
location: region:100889-100960:-1
so has part: feature:100889-100960:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:100889-100960:-1:exon

trnat-ugu
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: trnat-ugu
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(101414..101487)
location: region:101414-101487:-1
so has part: feature:101414-101487:-1:exon
subclass of: SO_0000663

117398859
type: Gene
SIO_000068: ncbigene

position:101414:-1
position: 101414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:101487:-1
position: 101487
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:101414-101487:-1:exon

trnat-ugu
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
gene: trnat-ugu
product: tRNA-Thr
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA threonine (anticodon UGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(101451..101453),aa:Thr,seq:tgt)
SIO_010081: trnat-ugu
subclass of: SO_0000673
so part of: trnat-ugu
location: complement(101414..101487)
location: region:101414-101487:-1
so has part: feature:101414-101487:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:101414-101487:-1:exon

trnak-uuu
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: trnak-uuu
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 102403..102493
location: region:102403-102493:1
so has part: feature:102403-102493:1:exon
subclass of: SO_0000663

117399200
type: Gene
SIO_000068: ncbigene

position:102403:1
position: 102403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:102493:1
position: 102493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:102403-102493:1:exon

trnak-uuu
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
gene: trnak-uuu
product: tRNA-Lys
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA lysine (anticodon UUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:102436..102438,aa:Lys,seq:ttt)
SIO_010081: trnak-uuu
subclass of: SO_0000673
so part of: trnak-uuu
location: join(102403..102439,102458..102493)
location: region:102403-102493:1
so has part: feature:102403-102439:1:exon
so has part: feature:102458-102493:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:102403-102439:1:exon

position:102439:1
position: 102439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:102458-102493:1:exon

position:102458:1
position: 102458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

trnat-ugu
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: trnat-ugu
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(102591..102664)
location: region:102591-102664:-1
so has part: feature:102591-102664:-1:exon
subclass of: SO_0000663

117398853
type: Gene
SIO_000068: ncbigene

position:102591:-1
position: 102591
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:102664:-1
position: 102664
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:102591-102664:-1:exon

trnat-ugu
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
gene: trnat-ugu
product: tRNA-Thr
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA threonine (anticodon UGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(102628..102630),aa:Thr,seq:tgt)
SIO_010081: trnat-ugu
subclass of: SO_0000673
so part of: trnat-ugu
location: complement(102591..102664)
location: region:102591-102664:-1
so has part: feature:102591-102664:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:102591-102664:-1:exon

trnaa-ugc
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: trnaa-ugc
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 450768..450839
location: region:450768-450839:1
so has part: feature:450768-450839:1:exon
subclass of: SO_0000663

117968136
type: Gene
SIO_000068: ncbigene

position:450768:1
position: 450768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:450839:1
position: 450839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:450768-450839:1:exon

trnaa-ugc
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
gene: trnaa-ugc
product: tRNA-Ala
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA alanine (anticodon UGC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:450800..450802,aa:Ala,seq:tgc)
SIO_010081: trnaa-ugc
subclass of: SO_0000673
so part of: trnaa-ugc
location: 450768..450839
location: region:450768-450839:1
so has part: feature:450768-450839:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:450768-450839:1:exon

trnaa-ugc
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: trnaa-ugc
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 452066..452137
location: region:452066-452137:1
so has part: feature:452066-452137:1:exon
subclass of: SO_0000663

117968137
type: Gene
SIO_000068: ncbigene

position:452066:1
position: 452066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:452137:1
position: 452137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:452066-452137:1:exon

trnaa-ugc
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
gene: trnaa-ugc
product: tRNA-Ala
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA alanine (anticodon UGC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:452098..452100,aa:Ala,seq:tgc)
SIO_010081: trnaa-ugc
subclass of: SO_0000673
so part of: trnaa-ugc
location: 452066..452137
location: region:452066-452137:1
so has part: feature:452066-452137:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:452066-452137:1:exon

trnaa-ugc
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: trnaa-ugc
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 453378..453449
location: region:453378-453449:1
so has part: feature:453378-453449:1:exon
subclass of: SO_0000663

117968122
type: Gene
SIO_000068: ncbigene

position:453378:1
position: 453378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:453449:1
position: 453449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:453378-453449:1:exon

trnaa-ugc
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
gene: trnaa-ugc
product: tRNA-Ala
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA alanine (anticodon UGC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:453410..453412,aa:Ala,seq:tgc)
SIO_010081: trnaa-ugc
subclass of: SO_0000673
so part of: trnaa-ugc
location: 453378..453449
location: region:453378-453449:1
so has part: feature:453378-453449:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:453378-453449:1:exon

trnaa-ugc
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: trnaa-ugc
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 454689..454760
location: region:454689-454760:1
so has part: feature:454689-454760:1:exon
subclass of: SO_0000663

117968123
type: Gene
SIO_000068: ncbigene

position:454689:1
position: 454689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:454760:1
position: 454760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:454689-454760:1:exon

trnaa-ugc
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
gene: trnaa-ugc
product: tRNA-Ala
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA alanine (anticodon UGC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:454721..454723,aa:Ala,seq:tgc)
SIO_010081: trnaa-ugc
subclass of: SO_0000673
so part of: trnaa-ugc
location: 454689..454760
location: region:454689-454760:1
so has part: feature:454689-454760:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:454689-454760:1:exon

trnaa-ugc
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: trnaa-ugc
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 455983..456054
location: region:455983-456054:1
so has part: feature:455983-456054:1:exon
subclass of: SO_0000663

117968124
type: Gene
SIO_000068: ncbigene

position:455983:1
position: 455983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:456054:1
position: 456054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:455983-456054:1:exon

trnaa-ugc
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
gene: trnaa-ugc
product: tRNA-Ala
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA alanine (anticodon UGC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:456015..456017,aa:Ala,seq:tgc)
SIO_010081: trnaa-ugc
subclass of: SO_0000673
so part of: trnaa-ugc
location: 455983..456054
location: region:455983-456054:1
so has part: feature:455983-456054:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:455983-456054:1:exon

trnaa-ugc
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: trnaa-ugc
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 457314..457385
location: region:457314-457385:1
so has part: feature:457314-457385:1:exon
subclass of: SO_0000663

117968125
type: Gene
SIO_000068: ncbigene

position:457314:1
position: 457314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:457385:1
position: 457385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:457314-457385:1:exon

trnaa-ugc
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
gene: trnaa-ugc
product: tRNA-Ala
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA alanine (anticodon UGC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:457346..457348,aa:Ala,seq:tgc)
SIO_010081: trnaa-ugc
subclass of: SO_0000673
so part of: trnaa-ugc
location: 457314..457385
location: region:457314-457385:1
so has part: feature:457314-457385:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:457314-457385:1:exon

trnaa-ugc
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: trnaa-ugc
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 458612..458683
location: region:458612-458683:1
so has part: feature:458612-458683:1:exon
subclass of: SO_0000663

117968126
type: Gene
SIO_000068: ncbigene

position:458612:1
position: 458612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:458683:1
position: 458683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:458612-458683:1:exon

trnaa-ugc
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
gene: trnaa-ugc
product: tRNA-Ala
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA alanine (anticodon UGC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:458644..458646,aa:Ala,seq:tgc)
SIO_010081: trnaa-ugc
subclass of: SO_0000673
so part of: trnaa-ugc
location: 458612..458683
location: region:458612-458683:1
so has part: feature:458612-458683:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:458612-458683:1:exon