Acipenser ruthenus mitochondrion, complete genome.
type: Entry
definition: Acipenser ruthenus mitochondrion, complete genome.
sequence version: NC_022453.1
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_022453.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Acipenser ruthenus (sterlet)
organism: Acipenser ruthenus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser.
reference: 1
references: 24021000
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence is identical to KF153104.\n\n##Assembly-Data-START##\nAssembly Method :: ContigExpress v. Vector NTI Suite 6.0\nSequencing Technology :: Sanger dideoxy sequencing\n##Assembly-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16790
topology: circular
so has quality: SO_0000988
location: 1..16790
location: region:1-16790:1
RO_0002162: 7906

NC_022453
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Complete mitochondrial genome of sterlet (Acipenser ruthenus)
author: Li, C.
author: Cheng, L.
author: Li, J.T.
author: Lu, C.Y.
author: Wang, Y.
author: Sun, X.W.
journal: Mitochondrial DNA (2013) In press
pubmed: 24021000
comments: Publication Status: Available-Online prior to print

24021000
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (26-SEP-2013) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Li, C.
author: Lu, C.
author: Sun, X.
journal: Submitted (28-MAY-2013) National Local Joint Engineering Laboratory for Freshwater Fish Breeding, Heilongjiang River Fisheries Research Institude, Chinese Academy of Fishery Sciences, 232 Hesong Street, Daoli District, Harbin, Heilongjiang 150070, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16790:1
position: 16790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16790:1:source
so part of: sequence
organism: Acipenser ruthenus
organelle: mitochondrion
mol type: genomic DNA

7906
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
product: tRNA-Phe
so part of: sequence
location: 1..68
location: region:1-68:1
so has part: feature:1-68:1:region

position:68:1
position: 68
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-68:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 7906
product: s-rRNA
note: 12S ribosomal RNA
so part of: sequence
location: 69..1029
location: region:69-1029:1
so has part: feature:69-1029:1:region

position:69:1
position: 69
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1029:1
position: 1029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:69-1029:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
product: tRNA-Val
so part of: sequence
location: 1030..1100
location: region:1030-1100:1
so has part: feature:1030-1100:1:region

position:1030:1
position: 1030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1100:1
position: 1100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1030-1100:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 7906
product: l-rRNA
note: 16S ribosomal RNA
so part of: sequence
location: 1101..2806
location: region:1101-2806:1
so has part: feature:1101-2806:1:region

position:1101:1
position: 1101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2806:1
position: 2806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1101-2806:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
product: tRNA-Leu
so part of: sequence
location: 2807..2881
location: region:2807-2881:1
so has part: feature:2807-2881:1:region

position:2807:1
position: 2807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2881:1
position: 2881
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2807-2881:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: ND1
so part of: sequence
location: 2882..3856
location: region:2882-3856:1
so has part: feature:2882-3856:1:exon
subclass of: SO_0000010

17097831
type: Gene
SIO_000068: ncbigene

position:2882:1
position: 2882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3856:1
position: 3856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2882-3856:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7906
gene: ND1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MTSHLLTYLINPLAYIVPILLAVAFLTLIERKVLGYMQLRKGPNIVGPYGLLQPIADGIKLFIKEPVRPTTASPFLFLATPIMALTLALTLWMPLPMPYPVADLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLCMIIFTGNFTLHTFNITQEAIWLLAPGWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSTILFLGAYHNPMLPEMTALNLMVKASMLSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLALVLWHVSLPIASAGLPPQI
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2882..3856
location: region:2882-3856:1
so has part: feature:2882-3856:1:exon

YP_008592567.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2882-3856:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
product: tRNA-Ile
so part of: sequence
location: 3866..3936
location: region:3866-3936:1
so has part: feature:3866-3936:1:region

position:3866:1
position: 3866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3936:1
position: 3936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3866-3936:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
product: tRNA-Gln
so part of: sequence
location: complement(3936..4006)
location: region:3936-4006:-1
so has part: feature:3936-4006:-1:region

position:3936:-1
position: 3936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4006:-1
position: 4006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3936-4006:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
product: tRNA-Met
so part of: sequence
location: 4006..4075
location: region:4006-4075:1
so has part: feature:4006-4075:1:region

position:4006:1
position: 4006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4075:1
position: 4075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4006-4075:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: ND2
so part of: sequence
location: 4076..5120
location: region:4076-5120:1
so has part: feature:4076-5120:1:exon
subclass of: SO_0000010

17097819
type: Gene
SIO_000068: ncbigene

position:4076:1
position: 4076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5120:1
position: 5120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4076-5120:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7906
gene: ND2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:5120,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPYVLAILLSSLGIGTTLTFASSHWLLAWMGLEISTLAIIPLMAQQHHPRAVEATTKYFLTQATAAAMILFASTTNAWTTGEWNIQEMSNPTALVLITMALALKIGLAPVHYWLPEVLQGLDLTTGLILSTWQKLAPFALIYQISPMMNPTLVIMLGLASTIIGGWGGLNQTQLRKILAYSSIAHLGWMMIVMQYSPNLAILNLILYITMTTATFLTFKNVASTKLSTLTLTWSKTPMMTTMAMMTLLSLGGLPPLTGFMPKWLILQELTKQDLPLTASIMALAALLSLFFYLRMCYAMTLTIAPNTNNNTSTWRQKSSQTTMTLSITTTLALALLPITPAIMALTT
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 4076..5120
location: region:4076-5120:1
so has part: feature:4076-5120:1:exon

YP_008592568.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4076-5120:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
product: tRNA-Trp
so part of: sequence
location: 5121..5193
location: region:5121-5193:1
so has part: feature:5121-5193:1:region

position:5121:1
position: 5121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5193:1
position: 5193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5121-5193:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
product: tRNA-Ala
so part of: sequence
location: complement(5196..5264)
location: region:5196-5264:-1
so has part: feature:5196-5264:-1:region

position:5196:-1
position: 5196
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5264:-1
position: 5264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5196-5264:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
product: tRNA-Asn
so part of: sequence
location: complement(5266..5338)
location: region:5266-5338:-1
so has part: feature:5266-5338:-1:region

position:5266:-1
position: 5266
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5338:-1
position: 5338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5266-5338:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
product: tRNA-Cys
so part of: sequence
location: complement(5373..5439)
location: region:5373-5439:-1
so has part: feature:5373-5439:-1:region

position:5373:-1
position: 5373
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5439:-1
position: 5439
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5373-5439:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
product: tRNA-Tyr
so part of: sequence
location: complement(5440..5510)
location: region:5440-5510:-1
so has part: feature:5440-5510:-1:region

position:5440:-1
position: 5440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5510:-1
position: 5510
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5440-5510:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
alternative label: COI
gene: COX1
gene synonym: COI
so part of: sequence
location: 5512..7065
location: region:5512-7065:1
so has part: feature:5512-7065:1:exon
subclass of: SO_0000010

17097820
type: Gene
SIO_000068: ncbigene

position:5512:1
position: 5512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7065:1
position: 7065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5512-7065:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7906
alternative label: COI
gene: COX1
gene synonym: COI
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MAITRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAVSQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVAYYAGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGSIKWDTPLLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGAFVHWFPLFTGYTLHGTWSKIHFAVMFVGVNLTFFPQHFLGLAGMPRRYSDYPDAYALWNTVSSIGSLISLVAVIMFLFILWEAFAAKREVMSVELTTTNVEWLHGCPPPYHTYEEPAFVQVQSTS
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5512..7065
location: region:5512-7065:1
so has part: feature:5512-7065:1:exon

YP_008592569.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5512-7065:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
product: tRNA-Ser
so part of: sequence
location: complement(7074..7142)
location: region:7074-7142:-1
so has part: feature:7074-7142:-1:region

position:7074:-1
position: 7074
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7142:-1
position: 7142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7074-7142:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
product: tRNA-Asp
so part of: sequence
location: 7152..7223
location: region:7152-7223:1
so has part: feature:7152-7223:1:region

position:7152:1
position: 7152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7223:1
position: 7223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7152-7223:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
alternative label: COII
gene: COX2
gene synonym: COII
so part of: sequence
location: 7238..7928
location: region:7238-7928:1
so has part: feature:7238-7928:1:exon
subclass of: SO_0000010

17097821
type: Gene
SIO_000068: ncbigene

position:7238:1
position: 7238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7928:1
position: 7928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7238-7928:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7906
alternative label: COII
gene: COX2
gene synonym: COII
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:7928,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHPSQLGFQDAASPVMEELLHFHDHTLMIVFLISTLVLYIIVAMVSTKLTNKYVLDSQEIEIVWTVLPAVILILIALPSLRILYLMDEINDPHLTIKAMGHQWYWSYEYTDYEDLGFDSYMIPTQDLAPGQFRLLEADHRMVVPMESPIRVLVSAEDVLHSWAVPALGIKMDAVPGRLNQTAFITSRPGVYYGQCSEICGANHSFMPIVVEAVPLEHFENWSSLMLEES
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7238..7928
location: region:7238-7928:1
so has part: feature:7238-7928:1:exon

YP_008592570.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7238-7928:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
product: tRNA-Lys
so part of: sequence
location: 7929..8002
location: region:7929-8002:1
so has part: feature:7929-8002:1:region

position:7929:1
position: 7929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8002:1
position: 8002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7929-8002:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: ATP8
so part of: sequence
location: 8004..8171
location: region:8004-8171:1
so has part: feature:8004-8171:1:exon
subclass of: SO_0000010

17097822
type: Gene
SIO_000068: ncbigene

position:8004:1
position: 8004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8171:1
position: 8171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8004-8171:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7906
gene: ATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNPSPWFMILVFSWLIFLIVLPPKVLGHTFTNEPTHKNAEKIKPEPWTWPWS
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 8004..8171
location: region:8004-8171:1
so has part: feature:8004-8171:1:exon

YP_008592571.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8004-8171:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: ATP6
so part of: sequence
location: 8162..8845
location: region:8162-8845:1
so has part: feature:8162-8845:1:exon
subclass of: SO_0000010

17097823
type: Gene
SIO_000068: ncbigene

position:8162:1
position: 8162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8845:1
position: 8845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8162-8845:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7906
gene: ATP6
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: MILSFFDQFMSPTHLGIPLIALALSLPWVLIPTPTNRWLNNRLLTLQGWFINRFTQQLMLPINLGGHKWAVLLTALMLLLITLNLLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTAALGHLLPEGTPVPLIPVLIIIETISLFIRPLALGVRLTANLTAGHLLIQLIATAAFMLLPMMHAVAILTSTVLFLLTLLKVAVAMIQAYVFVLLLSLYLQENV
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 8162..8845
location: region:8162-8845:1
so has part: feature:8162-8845:1:exon

YP_008592572.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8162-8845:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
alternative label: COIII
gene: COX3
gene synonym: COIII
so part of: sequence
location: 8845..9629
location: region:8845-9629:1
so has part: feature:8845-9629:1:exon
subclass of: SO_0000010

17097824
type: Gene
SIO_000068: ncbigene

position:9629:1
position: 9629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8845-9629:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7906
alternative label: COIII
gene: COX3
gene synonym: COIII
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9628..9629,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MARQAHAYHMVDPSPWPLTGAVAALLMTSGLAVWFHFNSTVLMTMGLTLLLLTMYQWWRDIIREGTFQGHHTPPVQKGLRYGMILFITSEVFFFLGFFWAFYHASLAPTPELGGCWPPTGIITLDPFEVPLLNTAVLLASGVTVTWAHHSIMERERKQTIQALALTILLGFYFTALQAMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQIQYHFTSEHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8845..9629
location: region:8845-9629:1
so has part: feature:8845-9629:1:exon

YP_008592573.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8845-9629:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
product: tRNA-Gly
so part of: sequence
location: 9630..9702
location: region:9630-9702:1
so has part: feature:9630-9702:1:region

position:9630:1
position: 9630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9702:1
position: 9702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9630-9702:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: ND3
so part of: sequence
location: 9703..10051
location: region:9703-10051:1
so has part: feature:9703-10051:1:exon
subclass of: SO_0000010

17097825
type: Gene
SIO_000068: ncbigene

position:9703:1
position: 9703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10051:1
position: 10051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9703-10051:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7906
gene: ND3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:10051,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNLIMAVLAIAVTLSCILAVVAFWLPQMNPDSEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLASPTAALLWATTILILLTLGLIYEWTQGGLEWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9703..10051
location: region:9703-10051:1
so has part: feature:9703-10051:1:exon

YP_008592574.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9703-10051:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
product: tRNA-Arg
so part of: sequence
location: 10052..10121
location: region:10052-10121:1
so has part: feature:10052-10121:1:region

position:10052:1
position: 10052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10121:1
position: 10121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10052-10121:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: ND4L
so part of: sequence
location: 10122..10418
location: region:10122-10418:1
so has part: feature:10122-10418:1:exon
subclass of: SO_0000010

17097826
type: Gene
SIO_000068: ncbigene

position:10122:1
position: 10122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10418:1
position: 10418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10122-10418:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7906
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MTPVHFSFSSAFMLGLMGLTFHRTHLLSALLCLEGMMLSLFIALSLWSLQLESTTYATAPMLLLAFSACEAGAGLALLVATTRTHGTDHLQNLNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 10122..10418
location: region:10122-10418:1
so has part: feature:10122-10418:1:exon

YP_008592575.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10122-10418:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: ND4
so part of: sequence
location: 10412..11792
location: region:10412-11792:1
so has part: feature:10412-11792:1:exon
subclass of: SO_0000010

17097827
type: Gene
SIO_000068: ncbigene

position:10412:1
position: 10412
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11792:1
position: 11792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10412-11792:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7906
gene: ND4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11792,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKILIPTLMLFPTTWLVTPKWLWTTTTAQALVIATASLTLLNWNSETGWTSSNPYLGTDPLSTPLLVLTCWLLPLMILASQNHISPEPISRQRTYITLLVSLQLFLIMAFGATEIILFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLVLQKELGSLSMLVIQYMQPAPLCTWADKVWWAACLVAFLVKMPLYGAHLWLPKAHVEAPVAGSMVLAAVLLKLGGYGMMRMIIMLEPASKNLAYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVVAGILIQTPWGFTGAIILMIAHGLASSALFCLANTNYERLHSRTLLLARGMQAVLPLMATWWFIANLANLALPPLPNLMGELVIITSMFNWSNWTIILTGGGTLITASYSLYMYLMTQRGPVSTLIMAVEPSHTREHLLMALHLIPIILLMLKPELMWGWCF
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10412..11792
location: region:10412-11792:1
so has part: feature:10412-11792:1:exon

YP_008592576.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10412-11792:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
product: tRNA-His
so part of: sequence
location: 11793..11861
location: region:11793-11861:1
so has part: feature:11793-11861:1:region

position:11793:1
position: 11793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11861:1
position: 11861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11793-11861:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
product: tRNA-Ser
so part of: sequence
location: 11862..11929
location: region:11862-11929:1
so has part: feature:11862-11929:1:region

position:11862:1
position: 11862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11929:1
position: 11929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11862-11929:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
product: tRNA-Leu
so part of: sequence
location: 11930..12002
location: region:11930-12002:1
so has part: feature:11930-12002:1:region

position:11930:1
position: 11930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12002:1
position: 12002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11930-12002:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: ND5
so part of: sequence
location: 12003..13844
location: region:12003-13844:1
so has part: feature:12003-13844:1:exon
subclass of: SO_0000010

17097828
type: Gene
SIO_000068: ncbigene

position:12003:1
position: 12003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13844:1
position: 13844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12003-13844:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7906
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MHSPTLIFSSTLLIIFILLTYPLIVSLNPSPLNKKWATTHVKTAVQTAFYASLLPLAVFFDQGMEVITTNWHWMNIATFDINISFKFDQYSIIFTPVALYVTWSILEFASWYMHSDPNMNRFFKYLLLFLIAMITLVTANNMFQLFIGWEGVGIMSFLLIGWWYGRADANTAALQAVIYNRVGDIGLILSMAWFAMNMNTWEIQQMFASSQDNQATLPLMGLILAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRLHPLMEHNQVALTTCLCLGATTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLHTMLPLTSTCLTIGSLALTGMPFLSGFFSKDAIIEALNTSHLNAWALTLTLIATSFTAVYSFRVIFFASMGSPRFLPLSPLNENNPTVINPIKRLAWGSILAGLFITSNFLPAKTPIMTMPMTLKLSALLVTALGLLMALELTSLTNKQLKITPTIPLHNFSNMLGYFPSIIHRLAPKIKLSLGQAMATHLIDQTWLEKVGPKGITTSQIPLIKATNSIQQGLIKTYLTIFFLTTTLSILLITLI
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 12003..13844
location: region:12003-13844:1
so has part: feature:12003-13844:1:exon

YP_008592577.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12003-13844:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: ND6
so part of: sequence
location: complement(13841..14362)
location: region:13841-14362:-1
so has part: feature:13841-14362:-1:exon
subclass of: SO_0000010

17097829
type: Gene
SIO_000068: ncbigene

position:13841:-1
position: 13841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14362:-1
position: 14362
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13841-14362:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7906
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MFYFTFLVLIGLVLGLVGVASNPAPYFAALGLVVAAAVGCGILVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPETWGDWSVLFYVVVYIAGVLVVGGLVGGDWYSYSWVVVDEFKDLSLLRGDFSGVALMYSLGGAMLVVSGWVLLLTLFVVLELTRGLSRGALRAV
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13841..14362)
location: region:13841-14362:-1
so has part: feature:13841-14362:-1:exon

YP_008592578.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13841-14362:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
product: tRNA-Glu
so part of: sequence
location: complement(14363..14432)
location: region:14363-14432:-1
so has part: feature:14363-14432:-1:region

position:14363:-1
position: 14363
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14432:-1
position: 14432
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14363-14432:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 7906
gene: CYTB
so part of: sequence
location: 14435..15575
location: region:14435-15575:1
so has part: feature:14435-15575:1:exon
subclass of: SO_0000010

17097830
type: Gene
SIO_000068: ncbigene

position:14435:1
position: 14435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15575:1
position: 15575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14435-15575:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7906
gene: CYTB
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:15575,aa:TERM)
transl table: 2
product: cytochrome b
translation: MANIRKTHPLLKIINGAFIDLPTPSNISVWWNFGSLLGLCLVTQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLLFLHQTGSNNPTGLNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPLSQILFWTLVADMLVLTWIGGQPVEHPFVLIGQVASTVYFALFLIALPLTGLLENKALNWN
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14435..15575
location: region:14435-15575:1
so has part: feature:14435-15575:1:exon

YP_008592579.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14435-15575:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
product: tRNA-Thr
so part of: sequence
location: 15576..15648
location: region:15576-15648:1
so has part: feature:15576-15648:1:region

position:15576:1
position: 15576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15648:1
position: 15648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15576-15648:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7906
product: tRNA-Pro
so part of: sequence
location: complement(15652..15721)
location: region:15652-15721:-1
so has part: feature:15652-15721:-1:region

position:15652:-1
position: 15652
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15721:-1
position: 15721
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15652-15721:-1:region

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 7906
so part of: sequence
location: 15722..16790
location: region:15722-16790:1
so has part: feature:15722-16790:1:region

position:15722:1
position: 15722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15722-16790:1:region