Scyliorhinus canicula mitochondrion, complete genome.
type: Entry
definition: Scyliorhinus canicula mitochondrion, complete genome.
sequence version: NC_001950.1
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_001950.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Scyliorhinus canicula (smaller spotted catshark)
organism: Scyliorhinus canicula
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Carcharhiniformes; Scyliorhinidae; Scyliorhinus.
reference: 1
references: 9725850
reference: 2
reference: 3
comment: PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence was derived from Y16067.\nRelated sequence Y09526.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16697
topology: circular
so has quality: SO_0000988
location: 1..16697
location: region:1-16697:1
RO_0002162: 7830

NC_001950
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: The complete nucleotide sequence of the mitochondrial DNA of the dogfish, Scyliorhinus canicula
author: Delarbre, C.
author: Spruyt, N.
author: Delmarre, C.
author: Gallut, C.
author: Barriel, V.
author: Janvier, P.
author: Laudet, V.
author: Gachelin, G.
journal: Genetics
volume: 150
issue: 1
pages: 331-344
year: 1998
pubmed: 9725850

9725850
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (08-SEP-1999) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Gachelin, G.
journal: Submitted (30-DEC-1997) G. Gachelin, Institut Pasteur, Dept. of Immunology, 25 rue du Docteur ROUX, 75015 Paris Cedex, FRANCE
comments: revised by submitter 01-MAY-1998

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16697:1
position: 16697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16697:1:source
so part of: sequence
organism: Scyliorhinus canicula
organelle: mitochondrion
mol type: genomic DNA
isolate: single individual
tissue type: muscle
dev stage: adult

7830
type: Taxonomy
SIO_000068: taxonomy

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 7830
alternative label: NADH 1
gene: ND1
gene synonym: NADH 1
so part of: sequence
location: 1..975
location: region:1-975:1
so has part: feature:1-975:1:exon
subclass of: SO_0000010

808294
type: Gene
SIO_000068: ncbigene

position:975:1
position: 975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-975:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7830
alternative label: NADH 1
gene: ND1
gene synonym: NADH 1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MLQTTLLYLINPLAYIIPILLATAFLTLIERKILGYMQFRKGPNIVGPYGLLQPIADGLKLFIKEPIRPSASSRSYFLATPTVALALALLMWMPLPLPHSIINLNLGLLFILAISSLTVYTILGSGWASNSKYALMGALRAVAQTISYEVSLGLILLSMIIFAGGFTLHTFNLAQETIWLLIPGWPLAFMWYISTLAETNRAPFDLTEGESELVSGFNIEYAAGPFALFFLAEYTNILLMNTLSVILFMGTSYNPLMPQISSLSLMMKASMLTVLFLWIRASYPRFRYDQLMHLVWKNFLPLTLAIILWHMALPLATTSLPPLT
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 1..975
location: region:1-975:1
so has part: feature:1-975:1:exon

NP_007614.1
type: Protein
SIO_000068: ncbiprotein

O21408
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:1-975:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7830
product: tRNA-Ile
so part of: sequence
location: 979..1048
location: region:979-1048:1
so has part: feature:979-1048:1:region

position:979:1
position: 979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1048:1
position: 1048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:979-1048:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7830
product: tRNA-Gln
so part of: sequence
location: complement(1050..1122)
location: region:1050-1122:-1
so has part: feature:1050-1122:-1:region

position:1050:-1
position: 1050
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1122:-1
position: 1122
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1050-1122:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7830
product: tRNA-Met
so part of: sequence
location: 1123..1192
location: region:1123-1192:1
so has part: feature:1123-1192:1:region

position:1123:1
position: 1123
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1192:1
position: 1192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1123-1192:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 7830
alternative label: NADH 2
gene: ND2
gene synonym: NADH 2
so part of: sequence
location: 1193..2239
location: region:1193-2239:1
so has part: feature:1193-2239:1:exon
subclass of: SO_0000010

808291
type: Gene
SIO_000068: ncbigene

position:1193:1
position: 1193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2239:1
position: 2239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1193-2239:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7830
alternative label: NADH 2
gene: ND2
gene synonym: NADH 2
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPTVLTIIISSMGLGTTLTFIGSHWLLVWMGLEINTLAIIPLMIRQHHPRAVEATTKYFITQATASALLLFASVTNAWTSGEWSLIEMLNPTSATLATAALALKIGLAPLHFWLPEVLQGLDLTTGLILATWQKLAPFAILLQLSPLLNSNLLLLFGVTSTIVGGWGGLNQTQLRKILAYSSIANLGWMITILHYSPSLTLLNLILYMFMTLTTFLLFKTFNSTKINSISSSTLKSPLMSVIALMTLLSLGGLPPLSGFMPKWLILQELTKQSLIIPATIMALMALLSLFFYLRLCYATTLTKAPGPINMASTWRTKSHQPTLILLTSASISIFMLPMTPLILMLMT
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 1193..2239
location: region:1193-2239:1
so has part: feature:1193-2239:1:exon

NP_007615.1
type: Protein
SIO_000068: ncbiprotein

O21409
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:1193-2239:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7830
product: tRNA-Trp
so part of: sequence
location: 2239..2307
location: region:2239-2307:1
so has part: feature:2239-2307:1:region

position:2307:1
position: 2307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2239-2307:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7830
product: tRNA-Ala
so part of: sequence
location: complement(2309..2377)
location: region:2309-2377:-1
so has part: feature:2309-2377:-1:region

position:2309:-1
position: 2309
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2377:-1
position: 2377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2309-2377:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7830
product: tRNA-Asn
so part of: sequence
location: complement(2378..2450)
location: region:2378-2450:-1
so has part: feature:2378-2450:-1:region

position:2378:-1
position: 2378
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2450:-1
position: 2450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2378-2450:-1:region

rep_origin
type: Replication Origin
subclass of: SO_0000296
RO_0002162: 7830
note: L strand
so part of: sequence
location: complement(2448..2498)
location: region:2448-2498:-1
so has part: feature:2448-2498:-1:region

position:2448:-1
position: 2448
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2498:-1
position: 2498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2448-2498:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7830
product: tRNA-Cys
so part of: sequence
location: complement(2488..2554)
location: region:2488-2554:-1
so has part: feature:2488-2554:-1:region

position:2488:-1
position: 2488
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2554:-1
position: 2554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2488-2554:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7830
product: tRNA-Tyr
so part of: sequence
location: complement(2556..2625)
location: region:2556-2625:-1
so has part: feature:2556-2625:-1:region

position:2556:-1
position: 2556
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2625:-1
position: 2625
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2556-2625:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 7830
alternative label: CO I
gene: COX1
gene synonym: CO I
so part of: sequence
location: 2627..4180
location: region:2627-4180:1
so has part: feature:2627-4180:1:exon
subclass of: SO_0000010

808296
type: Gene
SIO_000068: ncbigene

position:2627:1
position: 2627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4180:1
position: 4180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2627-4180:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7830
alternative label: CO I
gene: COX1
gene synonym: CO I
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MAINRWLFSTNHKDIGTLYLIFGAWAGMVGTALSLLIRAELGQPGSLLGDDQIYNVIVTAHAFVMIFFMVMPVMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASAGVEAGAGTGWTVYPPLAGNMAHAGRSVDLTIFSLHLAGISSILASINFITTIINMKPPAVSQYQTPLFVWSILVTTVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHVVAYYSGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGSIKWETPLLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVQTMGAVFAIMAGFIHWFPLMSGFTLHSTWTKIQFVLMFIGVNLTFFPQHFLGLAGMPRRYSDYPDAYALWNTVSSIGSLISLVAVIMLLFIIWEAFSSKREVLSIELPNTNVEWLHGCPPPYHTYEEPAFVQVQRSF
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 2627..4180
location: region:2627-4180:1
so has part: feature:2627-4180:1:exon

NP_007616.1
type: Protein
SIO_000068: ncbiprotein

O79403
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:2627-4180:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7830
product: tRNA-Ser
codon recognized: UCN
so part of: sequence
location: complement(4181..4251)
location: region:4181-4251:-1
so has part: feature:4181-4251:-1:region

position:4181:-1
position: 4181
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4251:-1
position: 4251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4181-4251:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7830
product: tRNA-Asp
so part of: sequence
location: 4256..4325
location: region:4256-4325:1
so has part: feature:4256-4325:1:region

position:4256:1
position: 4256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4325:1
position: 4325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4256-4325:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 7830
alternative label: CO II
gene: COX2
gene synonym: CO II
so part of: sequence
location: 4334..5024
location: region:4334-5024:1
so has part: feature:4334-5024:1:exon
subclass of: SO_0000010

808299
type: Gene
SIO_000068: ncbigene

position:4334:1
position: 4334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5024:1
position: 5024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4334-5024:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7830
alternative label: CO II
gene: COX2
gene synonym: CO II
codon start: 1
transl except: (pos:5024,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHPSQLGFQDAASPVMEELIHFHDHTLMIVFLISTLVLYIITAMVSTKLTNKYILDSQEIEIVWTILPAIILIMIALPSLRILYLMDEINDPHLTIKAMGHQWYWSYEYTDYEDLGFDSYMIQTQDLTPGQFRLLETDHRMVVPMESPIRVLVSAEDVLHAWAVPALGVKMDAVPGRLNQTAFIISRPGVYYGQCSEICGANHSFMPIVVEAVPLEHFETWSSLMLEEA
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 4334..5024
location: region:4334-5024:1
so has part: feature:4334-5024:1:exon

NP_007617.1
type: Protein
SIO_000068: ncbiprotein

O79404
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:4334-5024:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7830
product: tRNA-Lys
so part of: sequence
location: 5025..5098
location: region:5025-5098:1
so has part: feature:5025-5098:1:region

position:5025:1
position: 5025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5098:1
position: 5098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5025-5098:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 7830
alternative label: ATPase 8
gene: ATP8
gene synonym: ATPase 8
so part of: sequence
location: 5100..5267
location: region:5100-5267:1
so has part: feature:5100-5267:1:exon
subclass of: SO_0000010

808295
type: Gene
SIO_000068: ncbigene

position:5100:1
position: 5100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5267:1
position: 5267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5100-5267:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7830
alternative label: ATPase 8
gene: ATP8
gene synonym: ATPase 8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNPSPWFIILLFSWVIFMVILPNKVMNHLFNNEPALKSTEKSKPDPWNWPWL
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 5100..5267
location: region:5100-5267:1
so has part: feature:5100-5267:1:exon

NP_007618.1
type: Protein
SIO_000068: ncbiprotein

O79405
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:5100-5267:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 7830
alternative label: ATPase 6
gene: ATP6
gene synonym: ATPase 6
so part of: sequence
location: 5258..5941
location: region:5258-5941:1
so has part: feature:5258-5941:1:exon
subclass of: SO_0000010

808300
type: Gene
SIO_000068: ncbigene

position:5258:1
position: 5258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5941:1
position: 5941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5258-5941:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7830
alternative label: ATPase 6
gene: ATP6
gene synonym: ATPase 6
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: MIMSFFDQFLSPSFLGIPLIALAISIPWLMFPTPTNRWLNNRLLTLQAWFINRFIYQLMQPMNLGGHKWAILFTALMLFLITINLLGLLPYTFTPTTQLSLNMAFALPLWLTTVLIGMFNQPTIALGHLLPEGTPTPLVPVLIIIETISLFIRPLALGVRLTANLTAGHLLMQLIATAAFVLLTMMPTVALLTSLVLFLLTILEVAVAMIQAYVFVLLLSLYLQENV
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 5258..5941
location: region:5258-5941:1
so has part: feature:5258-5941:1:exon

NP_007619.1
type: Protein
SIO_000068: ncbiprotein

O79406
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:5258-5941:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 7830
alternative label: CO III
gene: COX3
gene synonym: CO III
so part of: sequence
location: 5941..6726
location: region:5941-6726:1
so has part: feature:5941-6726:1:exon
subclass of: SO_0000010

808297
type: Gene
SIO_000068: ncbigene

position:6726:1
position: 6726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5941-6726:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7830
alternative label: CO III
gene: COX3
gene synonym: CO III
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit III
translation: MAHQAHPYHMVDPSPWPLTGATAALLMTSGLAIWFHFHSLLLLYLGLTLLLLTMIQWWRDIIREGTFQGHHTPPVQKGLRYGMILFIVSEVFFFLGFFWAFYHSSLAPTPELGGCWPPTGINPLDPFEVPLLNTAVLLASGVTVTWAHHGLMEGNRKEAIQALTLTIILGVYFTALQAMEYYEAPFTIADGVYGTTFFVATGFHGLHVIIGSTFLAVCLLRQVLYHFTSEHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 5941..6726
location: region:5941-6726:1
so has part: feature:5941-6726:1:exon

NP_007620.1
type: Protein
SIO_000068: ncbiprotein

O79407
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:5941-6726:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7830
product: tRNA-Gly
so part of: sequence
location: 6729..6798
location: region:6729-6798:1
so has part: feature:6729-6798:1:region

position:6729:1
position: 6729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6798:1
position: 6798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6729-6798:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 7830
alternative label: NADH 3
gene: ND3
gene synonym: NADH 3
so part of: sequence
location: 6799..7149
location: region:6799-7149:1
so has part: feature:6799-7149:1:exon
subclass of: SO_0000010

808301
type: Gene
SIO_000068: ncbigene

position:6799:1
position: 6799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7149:1
position: 7149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6799-7149:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7830
alternative label: NADH 3
gene: ND3
gene synonym: NADH 3
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MSLIMSSVVATALVSLILAFIAFWLPSLKPDNEKLSPYECGFDPLGSARLPFSMRFFLIAILFLLFDLEIALLLPLPWGNQLFSPFSTLLWTTTILVLLTLGLIYEWFQGGLEWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 6799..7149
location: region:6799-7149:1
so has part: feature:6799-7149:1:exon

NP_007621.1
type: Protein
SIO_000068: ncbiprotein

O79408
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:6799-7149:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7830
product: tRNA-Arg
so part of: sequence
location: 7148..7217
location: region:7148-7217:1
so has part: feature:7148-7217:1:region

position:7148:1
position: 7148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7217:1
position: 7217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7148-7217:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 7830
alternative label: NADH 4L
gene: ND4L
gene synonym: NADH 4L
so part of: sequence
location: 7218..7514
location: region:7218-7514:1
so has part: feature:7218-7514:1:exon
subclass of: SO_0000010

808298
type: Gene
SIO_000068: ncbigene

position:7218:1
position: 7218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7514:1
position: 7514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7218-7514:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7830
alternative label: NADH 4L
gene: ND4L
gene synonym: NADH 4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MSPMYFSFSSAFMLGLMGLAFNRSHLLSALLCLEGMMLTLFVATATWSLMLNSTSSSILPMILLTFSACEASAGLAILVATSRSHGSDNLQNLNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 7218..7514
location: region:7218-7514:1
so has part: feature:7218-7514:1:exon

NP_007622.1
type: Protein
SIO_000068: ncbiprotein

O79409
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:7218-7514:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 7830
alternative label: NADH 4
gene: ND4
gene synonym: NADH 4
so part of: sequence
location: 7508..8888
location: region:7508-8888:1
so has part: feature:7508-8888:1:exon
subclass of: SO_0000010

808293
type: Gene
SIO_000068: ncbigene

position:7508:1
position: 7508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8888:1
position: 8888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7508-8888:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7830
alternative label: NADH 4
gene: ND4
gene synonym: NADH 4
codon start: 1
transl except: (pos:8888,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKILIPTIMLFPTTWFMNKKWLWSSITTHSLLISLLSLSWFKWNMDIGWDFSNQYLAIDPLSAPLLILTCWLLPLMILASQNHITPEPLTRQRIYISLLISLQVFLIMAFSATEMILFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLIGSLPLLIALLFMQNDLNTLSMFIIQYSHLPNPSSWANKFWWTACLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAVLLKLGGYGMMRIIIMLNPITKEMAYPFIILAIWGIVMTSSICLRQTDLKSMIAYSSVSHMGLVAGAILIQTPWSFAGAITLMIAHGLVSSALFCLANTNYERIHSRTLLLARGVQVILPLMATWWLLANLANLALPPSPNLVGELLIISSLFNWSNWTILLTGIGVLITASYSLYMFLMTQRGLTSKHLMNLNPSHTREHLLLTLHVLPVLLLILKPELIWGWTF
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 7508..8888
location: region:7508-8888:1
so has part: feature:7508-8888:1:exon

NP_007623.1
type: Protein
SIO_000068: ncbiprotein

O79410
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:7508-8888:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7830
product: tRNA-His
so part of: sequence
location: 8889..8957
location: region:8889-8957:1
so has part: feature:8889-8957:1:region

position:8889:1
position: 8889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8957:1
position: 8957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8889-8957:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7830
product: tRNA-Ser
codon recognized: AGY
so part of: sequence
location: 8958..9024
location: region:8958-9024:1
so has part: feature:8958-9024:1:region

position:8958:1
position: 8958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9024:1
position: 9024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8958-9024:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7830
product: tRNA-Leu
codon recognized: CUN
so part of: sequence
location: 9025..9096
location: region:9025-9096:1
so has part: feature:9025-9096:1:region

position:9025:1
position: 9025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9096:1
position: 9096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9025-9096:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 7830
alternative label: NADH 5
gene: ND5
gene synonym: NADH 5
so part of: sequence
location: 9097..10926
location: region:9097-10926:1
so has part: feature:9097-10926:1:exon
subclass of: SO_0000010

808303
type: Gene
SIO_000068: ncbigene

position:9097:1
position: 9097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10926:1
position: 10926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9097-10926:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7830
alternative label: NADH 5
gene: ND5
gene synonym: NADH 5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MNTIFNSSFLLIFITLMIPLVTSLSPKKLNPSPSSFYVKTAVKISFFISLIPLFIFLDQGLESIVTNWNWMNMGPFNINMSFKFDLYSIMFTPVALYVTWSILEFALWYMHLDPNINRFFKYLLLFLISMIILVTANNMFQLFIGWEGVGIMSFLLIGWWYSRTDANTAALQAVIYNRIGDIGLILSMAWLAMNLNSWEIQQIFILSKDKDLTLPLLGLVLAAAGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRLHPLIQDNQFILTTCLCLGAITTLFTATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLHKLLPFTSSSLTVGSLALTGMPFLSGFFSKDAIIEAMNTSHLNAWALILTLVATSFTAIYSLRLIFFTLMKFPRFNSFSPINENNPMVINPLKRLAYGSIIAGLIITSNLPPAKTQIMTMSPLLKLSALLVTILGLLLALELTNLTHSQFKIYPTFPYHHFSNMLGYFPPIIHRLLPKINLNWAQHISTHLIDQTWNEKIGPKSTLIQQIPLIKLSTHPQQGYIKTYLTLLFLTLTLIILVVFI
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 9097..10926
location: region:9097-10926:1
so has part: feature:9097-10926:1:exon

NP_007624.1
type: Protein
SIO_000068: ncbiprotein

O79411
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:9097-10926:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 7830
alternative label: NADH 6
gene: ND6
gene synonym: NADH 6
so part of: sequence
location: complement(10923..11444)
location: region:10923-11444:-1
so has part: feature:10923-11444:-1:exon
subclass of: SO_0000010

808302
type: Gene
SIO_000068: ncbigene

position:10923:-1
position: 10923
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11444:-1
position: 11444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10923-11444:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7830
alternative label: NADH 6
gene: ND6
gene synonym: NADH 6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MVYFVSMMMIGLILGLMGVASNPSPYYAALGLVTAAGVGCGLLVSYGGSFMSLILFLIYLGGMLVVFAYTAALAAEPYPEAWGDWSVLMYVGIYLTGLVIAGKYFLVGKWGDSWAGVEELSSFEVVRGDFGGVALLYSLGGWMLVLSGWVLLVTLFVVLEVTRGLSWGTLRAV
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(10923..11444)
location: region:10923-11444:-1
so has part: feature:10923-11444:-1:exon

NP_007625.1
type: Protein
SIO_000068: ncbiprotein

O79412
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:10923-11444:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7830
product: tRNA-Glu
so part of: sequence
location: complement(11445..11514)
location: region:11445-11514:-1
so has part: feature:11445-11514:-1:region

position:11445:-1
position: 11445
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11514:-1
position: 11514
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11445-11514:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 7830
alternative label: Cyt b
gene: CYTB
gene synonym: Cyt b
so part of: sequence
location: 11517..12660
location: region:11517-12660:1
so has part: feature:11517-12660:1:exon
subclass of: SO_0000010

808292
type: Gene
SIO_000068: ncbigene

position:11517:1
position: 11517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12660:1
position: 12660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11517-12660:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7830
alternative label: Cyt b
gene: CYTB
gene synonym: Cyt b
codon start: 1
transl except: (pos:12660,aa:TERM)
transl table: 2
product: cytochrome b
translation: MATNIRKTHPLLKIVNHALIDLPAPSNISVWWNFGSLLGLCLIMQIITGLFLAMHYTADISMAFSSVIHISRDVNYGWLMRNIHAYGASFFFICIYLHIARGLYYGSYLNKEAWNIGVVLLFLLMATAFVGYVLPWGQMSFWGATVITNLLSAFPYIGNLLVQWIWGGFSVDNATLTRFFAFHFLLPFLILALSVIHILFLHETGANNPMGINSNTDKISFHPYFSYKDLFGFLIVITLLATLALFMPNLLGDAENFIPANPLVTPLHIQPEWYFLFAYAILRSIPNKLGGVLALLFSIFILLLVPLLHTSKLRSNIFRPLTQIFFWSLVTNAIILTWIGGQPVEQPFIMVGQIASVAYFSLFLFVIPITSWCENKFLSLN
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 11517..12660
location: region:11517-12660:1
so has part: feature:11517-12660:1:exon

NP_007626.1
type: Protein
SIO_000068: ncbiprotein

O79413
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:11517-12660:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7830
product: tRNA-Thr
so part of: sequence
location: 12661..12732
location: region:12661-12732:1
so has part: feature:12661-12732:1:region

position:12661:1
position: 12661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12732:1
position: 12732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12661-12732:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7830
product: tRNA-Pro
so part of: sequence
location: complement(12733..12801)
location: region:12733-12801:-1
so has part: feature:12733-12801:-1:region

position:12733:-1
position: 12733
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12801:-1
position: 12801
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12733-12801:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 7830
note: control region
so part of: sequence
location: 12802..13851
location: region:12802-13851:1
so has part: feature:12802-13851:1:region

position:12802:1
position: 12802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13851:1
position: 13851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12802-13851:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7830
product: tRNA-Phe
so part of: sequence
location: 13852..13920
location: region:13852-13920:1
so has part: feature:13852-13920:1:region

position:13852:1
position: 13852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13920:1
position: 13920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13852-13920:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 7830
product: 12S ribosomal RNA
so part of: sequence
location: 13921..14877
location: region:13921-14877:1
so has part: feature:13921-14877:1:region

position:13921:1
position: 13921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14877:1
position: 14877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13921-14877:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7830
product: tRNA-Val
so part of: sequence
location: 14878..14949
location: region:14878-14949:1
so has part: feature:14878-14949:1:region

position:14878:1
position: 14878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14949:1
position: 14949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14878-14949:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 7830
product: 16S ribosomal RNA
so part of: sequence
location: 14950..16622
location: region:14950-16622:1
so has part: feature:14950-16622:1:region

position:14950:1
position: 14950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16622:1
position: 16622
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14950-16622:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7830
product: tRNA-Leu
codon recognized: UUR
so part of: sequence
location: 16623..16697
location: region:16623-16697:1
so has part: feature:16623-16697:1:region

position:16623:1
position: 16623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16623-16697:1:region