Leucoraja erinacea ecotype New England chromosome 50, Leri_hhj_1, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Rajiformes; Rajidae; Leucoraja.
REFSEQ INFORMATION: The reference sequence is identical to\nCM054056.1.\nAssembly name: Leri_hhj_1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Okinawa Institute of Science\nand Technology on 2023/02/22. The original whole-genome shotgun\nproject has the accession JAMYXN000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Okinawa Institute of Science and\n Technology\nAssembly Date :: 21-FEB-2019\nAssembly Method :: dbg2olc v. 20160205\nAssembly Name :: Leri_hhj_1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 150.0x\nSequencing Technology :: Illumina; PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_028641065.1-RS_2023_04\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 04/21/2023\n##Genome-Annotation-Data-END##
zinc finger protein 229-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 53 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
RAD1 homolog (S. pombe); Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
tyrosine aminotransferase; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized protein LOC326033 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized protein LOC326033 homolog, transcript variant X2
uncharacterized protein LOC326033 homolog, transcript variant X1
1,5-anhydro-D-fructose reductase isoform X1
1,5-anhydro-D-fructose reductase isoform X2
peptide deformylase, mitochondrial; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 2 codons
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: peptide deformylase, mitochondrial
vacuolar protein sorting-associated protein 4A; Derived by automated computational analysis using gene prediction method: Gnomon.
vacuolar protein sorting-associated protein 4A
syntrophin, beta 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
UTP4 small subunit processome component; Derived by automated computational analysis using gene prediction method: Gnomon.
U3 small nucleolar RNA-associated protein 4 homolog
CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae); Derived by automated computational analysis using gene prediction method: Gnomon.
CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae)
chromosome transmission fidelity protein 8 homolog
hyaluronan synthase 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 53 Proteins
transport and golgi organization 6 homolog (Drosophila); Derived by automated computational analysis using gene prediction method: Gnomon.
transport and golgi organization 6 homolog (Drosophila)
transport and Golgi organization protein 6 homolog
F-box protein 31; Derived by automated computational analysis using gene prediction method: Gnomon.
cadherin 15, type 1, M-cadherin (myotubule); Derived by automated computational analysis using gene prediction method: Gnomon.
cadherin 15, type 1, M-cadherin (myotubule)
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
acyl-CoA synthetase family member 3; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
malonate--CoA ligase ACSF3, mitochondrial
CBFA2/RUNX1 partner transcriptional co-repressor 3; Derived by automated computational analysis using gene prediction method: Gnomon.
CBFA2/RUNX1 partner transcriptional co-repressor 3, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
CBFA2/RUNX1 partner transcriptional co-repressor 3, transcript variant X8
CBFA2/RUNX1 partner transcriptional co-repressor 3, transcript variant X2
CBFA2/RUNX1 partner transcriptional co-repressor 3, transcript variant X3
CBFA2/RUNX1 partner transcriptional co-repressor 3, transcript variant X1
CBFA2/RUNX1 partner transcriptional co-repressor 3, transcript variant X6
CBFA2/RUNX1 partner transcriptional co-repressor 3, transcript variant X11
CBFA2/RUNX1 partner transcriptional co-repressor 3, transcript variant X12
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
CBFA2/RUNX1 partner transcriptional co-repressor 3, transcript variant X9
CBFA2/RUNX1 partner transcriptional co-repressor 3, transcript variant X10
CBFA2/RUNX1 partner transcriptional co-repressor 3, transcript variant X14
CBFA2/RUNX1 partner transcriptional co-repressor 3, transcript variant X15
CBFA2/RUNX1 partner transcriptional co-repressor 3, transcript variant X13
CBFA2/RUNX1 partner transcriptional co-repressor 3, transcript variant X4
CBFA2/RUNX1 partner transcriptional co-repressor 3, transcript variant X5
trafficking protein particle complex subunit 2L; Derived by automated computational analysis using gene prediction method: Gnomon.
trafficking protein particle complex subunit 2L, transcript variant X2
trafficking protein particle complex subunit 2L, transcript variant X1
trafficking protein particle complex subunit 2-like protein isoform X1
trafficking protein particle complex subunit 2-like protein isoform X2
galactosamine (N-acetyl)-6-sulfatase; Derived by automated computational analysis using gene prediction method: Gnomon.
asc-type amino acid transporter 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 49 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: asc-type amino acid transporter 1-like
low density lipoprotein receptor-related protein 3; Derived by automated computational analysis using gene prediction method: Gnomon.
low density lipoprotein receptor-related protein 3
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 18 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: low-density lipoprotein receptor-related protein 3
WD repeat-containing protein 88-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: WD repeat-containing protein 88-like
interleukin-17C-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
KIAA0513 ortholog; Derived by automated computational analysis using gene prediction method: Gnomon.
KIAA0513 ortholog, transcript variant X1
KIAA0513 ortholog, transcript variant X2
KIAA0513 ortholog, transcript variant X3
KIAA0513 ortholog, transcript variant X5
KIAA0513 ortholog, transcript variant X4
uncharacterized protein KIAA0513 homolog
translation initiation factor IF-2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
translation initiation factor IF-2-like, transcript variant X3
translation initiation factor IF-2-like, transcript variant X5
translation initiation factor IF-2-like, transcript variant X4
translation initiation factor IF-2-like, transcript variant X2
translation initiation factor IF-2-like, transcript variant X1
translation initiation factor IF-2-like isoform X1
translation initiation factor IF-2-like, transcript variant X7
translation initiation factor IF-2-like, transcript variant X6
uncharacterized protein LOC129715076 isoform X2
uncharacterized protein LOC129715076 isoform X3
translation initiation factor IF-2-like, transcript variant X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs
uncharacterized protein LOC129715076 isoform X4
FA core complex associated protein 24; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
LOW QUALITY PROTEIN: Fanconi anemia core complex-associated protein 24
rhophilin-2-A-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 10 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
G patch domain containing 1; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: G patch domain-containing protein 1
zinc finger protein 551-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 551-like, transcript variant X1
zinc finger protein 551-like, transcript variant X2
uncharacterized LOC129715052; Derived by automated computational analysis using gene prediction method: Gnomon.
Ig heavy chain C region-like; Derived by automated computational analysis using gene prediction method: Gnomon.