Leucoraja erinacea ecotype New England chromosome 49, Leri_hhj_1, whole genome shotgun sequence.
type: Entry
definition: Leucoraja erinacea ecotype New England chromosome 49, Leri_hhj_1, whole genome shotgun sequence.
sequence version: NC_073425.1
sequence date: 2023-04-27
sequence: sequence
division: CON
label: NC_073425.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA955276
dblink: SAMN23457310
keyword: WGS
keyword: RefSeq
source: Leucoraja erinacea (little skate)
organism: Leucoraja erinacea
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Rajiformes; Rajidae; Leucoraja.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM054055.1.\nAssembly name: Leri_hhj_1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Okinawa Institute of Science\nand Technology on 2023/02/22. The original whole-genome shotgun\nproject has the accession JAMYXN000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Okinawa Institute of Science and\n Technology\nAssembly Date :: 21-FEB-2019\nAssembly Method :: dbg2olc v. 20160205\nAssembly Name :: Leri_hhj_1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 150.0x\nSequencing Technology :: Illumina; PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_028641065.1-RS_2023_04\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 04/21/2023\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 1367107
topology: linear
so has quality: SO_0000987
location: 1..1367107
location: region:1-1367107:1
RO_0002162: 7782

NC_073425
type: RefSeq
SIO_000068: refseq

PRJNA955276
type: BioProject
SIO_000068: bioproject

SAMN23457310
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1367107:1
position: 1367107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-1367107:1:source
so part of: sequence
organism: Leucoraja erinacea
mol type: genomic DNA
specimen voucher: LE0618
chromosome: 49
tissue type: liver
dev stage: adult
ecotype: New England

7782
type: Taxonomy
SIO_000068: taxonomy

LOC129715048
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: LOC129715048
note: protein Wnt-9a-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(139954..142567)
location: region:139954-142567:-1
so has part: feature:139954-142567:-1:exon
subclass of: SO_0000010

129715048
type: Gene
SIO_000068: ncbigene

position:139954:-1
position: 139954
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:142567:-1
position: 142567
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:139954-142567:-1:exon

LOC129715048
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: LOC129715048
product: protein Wnt-9a-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
transcript id: XM_055664881.1
SIO_010081: LOC129715048
subclass of: SO_0000673
so part of: LOC129715048
location: complement(join(139954..140563,142511..142567))
location: region:139954-142567:-1
so has part: feature:142511-142567:-1:exon
so has part: feature:139954-140563:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:142511-142567:-1:exon

position:142511:-1
position: 142511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:139954-140563:-1:exon

position:140563:-1
position: 140563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC129715048
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: LOC129715048
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein Wnt-9a-like
translation: MAESQTHDITGGGVLGESRVIKSGVETTCKCHGVSGSCTVRTCWRQLAPFHEIGKLLKLKYETSLKVGSTTNEATGEGDITPPKKPPVPAAPAAAAAAAAAAHHHQIPRTTDLVYIDDSPSFCRPSKYSPGTATRKCYKDKNCESICCGRGHNTQSREVKRPCQCQVRWCCYVECKQCMQQEEIYTCKD
SIO_010081: LOC129715048
subclass of: SO_0000673
so part of: LOC129715048
location: complement(join(140051..140563,142511..142567))
location: region:140051-142567:-1
so has part: feature:142511-142567:-1:exon
so has part: feature:140051-140563:-1:exon

XP_055520856.1
type: Protein
SIO_000068: ncbiprotein

position:140051:-1
position: 140051
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:142511-142567:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:140051-140563:-1:exon

LOC129715045
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: LOC129715045
note: RNA-binding protein 43-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(681061..942017)
location: region:681061-942017:-1
so has part: feature:681061-942017:-1:exon
subclass of: SO_0000010

129715045
type: Gene
SIO_000068: ncbigene

position:681061:-1
position: 681061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:942017:-1
position: 942017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:681061-942017:-1:exon

LOC129715045
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 7782
gene: LOC129715045
product: RNA-binding protein 43-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST
transcript id: XR_008726437.1
SIO_010081: LOC129715045
so part of: LOC129715045
location: complement(join(681061..681652,924718..925917,927978..928087,931133..931335,941620..942004))
location: region:681061-942004:-1
so has part: feature:941620-942004:-1:exon
so has part: feature:931133-931335:-1:exon
so has part: feature:927978-928087:-1:exon
so has part: feature:924718-925917:-1:exon
so has part: feature:681061-681652:-1:exon

position:942004:-1
position: 942004
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:941620-942004:-1:exon

position:941620:-1
position: 941620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:931133-931335:-1:exon

position:931133:-1
position: 931133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:931335:-1
position: 931335
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:927978-928087:-1:exon

position:927978:-1
position: 927978
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:928087:-1
position: 928087
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:924718-925917:-1:exon

position:924718:-1
position: 924718
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:925917:-1
position: 925917
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:681061-681652:-1:exon

position:681652:-1
position: 681652
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

snap47
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: snap47
note: synaptosome associated protein 47; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(734771..767633)
location: region:734771-767633:-1
so has part: feature:734771-767633:-1:exon
subclass of: SO_0000010

129715043
type: Gene
SIO_000068: ncbigene

position:734771:-1
position: 734771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:767633:-1
position: 767633
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:734771-767633:-1:exon

snap47
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: snap47
product: synaptosome associated protein 47
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_055664876.1
SIO_010081: snap47
subclass of: SO_0000673
so part of: snap47
location: complement(join(734771..738093,747217..747329,750993..751501,763915..764477,767418..767633))
location: region:734771-767633:-1
so has part: feature:767418-767633:-1:exon
so has part: feature:763915-764477:-1:exon
so has part: feature:750993-751501:-1:exon
so has part: feature:747217-747329:-1:exon
so has part: feature:734771-738093:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:767418-767633:-1:exon

position:767418:-1
position: 767418
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:763915-764477:-1:exon

position:763915:-1
position: 763915
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:764477:-1
position: 764477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:750993-751501:-1:exon

position:750993:-1
position: 750993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:751501:-1
position: 751501
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:747217-747329:-1:exon

position:747217:-1
position: 747217
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:747329:-1
position: 747329
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:734771-738093:-1:exon

position:738093:-1
position: 738093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

snap47
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: snap47
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: synaptosomal-associated protein 47
translation: MNKDLCIHSWPGSYYVEGEKRWVHGILSLSPCRLAFTSDKGLALTSLQLSDVTGIRKETSSFIFSSLTVLLGGREKHWFSSLQPSRATVFNVVEHFWRSQLLSCGVQDTTAARGTATKGRELINLASSSQQRLGDMAKVLHHQGEQFDRIMNGLDKIESDMDVANRLLTELESPSWWPFGKRLRRSTQPEAASEAEPVLSPEWAFGKDGLILKVPSLYSQGPGPDPNLKQGQLAVLCSGLEISDSSGQPVHKYRRDEVDDVKVQSPYEIVVRQRFIGKPDISFTLHSARMPDVISIVEIQYARKMQFKEELLELFRPEDASASENHDMGSSIWNAATGFLGRVMHPASASGGQVSQQVCEQTVSEAEAEELRQILRRLKTMALDTECELERQNEVLDVIGTSTDQATSRIDTSHRRIRRLL
SIO_010081: snap47
subclass of: SO_0000673
so part of: snap47
location: complement(join(737947..738093,747217..747329,750993..751501,763915..764411))
location: region:737947-764411:-1
so has part: feature:763915-764411:-1:exon
so has part: feature:750993-751501:-1:exon
so has part: feature:747217-747329:-1:exon
so has part: feature:737947-738093:-1:exon

XP_055520851.1
type: Protein
SIO_000068: ncbiprotein

position:737947:-1
position: 737947
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:764411:-1
position: 764411
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:763915-764411:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:750993-751501:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:747217-747329:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:737947-738093:-1:exon

LOC129715044
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: LOC129715044
note: cyclin-dependent kinase 5 activator 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 790009..797296
location: region:790009-797296:1
so has part: feature:790009-797296:1:exon
subclass of: SO_0000010

129715044
type: Gene
SIO_000068: ncbigene

position:790009:1
position: 790009
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:797296:1
position: 797296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:790009-797296:1:exon

LOC129715044
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: LOC129715044
product: cyclin-dependent kinase 5 activator 1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 Proteins
transcript id: XM_055664877.1
SIO_010081: LOC129715044
subclass of: SO_0000673
so part of: LOC129715044
location: join(790009..790220,790811..797296)
location: region:790009-797296:1
so has part: feature:790009-790220:1:exon
so has part: feature:790811-797296:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:790009-790220:1:exon

position:790220:1
position: 790220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:790811-797296:1:exon

position:790811:1
position: 790811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC129715044
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: LOC129715044
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cyclin-dependent kinase 5 activator 1-like
translation: MGTVLSLSPGSRRSALFEDAPDSKSMGYHAIHSDSNRGSEQKGLKRHSMFIPALTWKRLVASTKRKGSRKPDPSNYQQKKKEVVDLNTENVKKSLSCANLSSYELQLPADSLASKKLSTIRKISSHGGGIGVGVGSPKRVIVQASTSELLKCLGEFLCQRCYRVKHLSPTDPVLWLRSVDRSLLLQGWQDQAFVTPANVVFVYLLCRDVIDGDQVATEHALQATLLTCLYLSYSYMGNEISYPLKPFLVESAKDVFWDRCLRIINAMSGKMLQINADPHYFTQVFADLKNEGSRDGFSRVSIALDR
SIO_010081: LOC129715044
subclass of: SO_0000673
so part of: LOC129715044
location: 790896..791816
location: region:790896-791816:1
so has part: feature:790896-791816:1:exon

XP_055520852.1
type: Protein
SIO_000068: ncbiprotein

position:790896:1
position: 790896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:791816:1
position: 791816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:790896-791816:1:exon

LOC129715042
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: LOC129715042
note: unconventional myosin-Id-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(801291..908260)
location: region:801291-908260:-1
so has part: feature:801291-908260:-1:exon
subclass of: SO_0000010

129715042
type: Gene
SIO_000068: ncbigene

position:801291:-1
position: 801291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:908260:-1
position: 908260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:801291-908260:-1:exon

LOC129715042
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: LOC129715042
product: unconventional myosin-Id-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins
transcript id: XM_055664875.1
SIO_010081: LOC129715042
subclass of: SO_0000673
so part of: LOC129715042
location: complement(join(801291..802404,817649..817791,821228..821341,828715..828819,830293..830437,838582..838806,854465..854672,856878..857044,864999..865131,867258..867332,868769..868839,870991..871161,873959..874073,876729..876874,879226..879432,882887..883003,884368..884463,891133..891186,898883..899048,900537..900630,901827..902035,907920..908260))
location: region:801291-908260:-1
so has part: feature:907920-908260:-1:exon
so has part: feature:901827-902035:-1:exon
so has part: feature:900537-900630:-1:exon
so has part: feature:898883-899048:-1:exon
so has part: feature:891133-891186:-1:exon
so has part: feature:884368-884463:-1:exon
so has part: feature:882887-883003:-1:exon
so has part: feature:879226-879432:-1:exon
so has part: feature:876729-876874:-1:exon
so has part: feature:873959-874073:-1:exon
so has part: feature:870991-871161:-1:exon
so has part: feature:868769-868839:-1:exon
so has part: feature:867258-867332:-1:exon
so has part: feature:864999-865131:-1:exon
so has part: feature:856878-857044:-1:exon
so has part: feature:854465-854672:-1:exon
so has part: feature:838582-838806:-1:exon
so has part: feature:830293-830437:-1:exon
so has part: feature:828715-828819:-1:exon
so has part: feature:821228-821341:-1:exon
so has part: feature:817649-817791:-1:exon
so has part: feature:801291-802404:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:907920-908260:-1:exon

position:907920:-1
position: 907920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:901827-902035:-1:exon

position:901827:-1
position: 901827
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:902035:-1
position: 902035
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:900537-900630:-1:exon

position:900537:-1
position: 900537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:900630:-1
position: 900630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:898883-899048:-1:exon

position:898883:-1
position: 898883
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:899048:-1
position: 899048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:891133-891186:-1:exon

position:891133:-1
position: 891133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:891186:-1
position: 891186
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:884368-884463:-1:exon

position:884368:-1
position: 884368
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:884463:-1
position: 884463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:882887-883003:-1:exon

position:882887:-1
position: 882887
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:883003:-1
position: 883003
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:879226-879432:-1:exon

position:879226:-1
position: 879226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:879432:-1
position: 879432
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:876729-876874:-1:exon

position:876729:-1
position: 876729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:876874:-1
position: 876874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:873959-874073:-1:exon

position:873959:-1
position: 873959
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:874073:-1
position: 874073
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:870991-871161:-1:exon

position:870991:-1
position: 870991
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:871161:-1
position: 871161
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:868769-868839:-1:exon

position:868769:-1
position: 868769
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:868839:-1
position: 868839
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:867258-867332:-1:exon

position:867258:-1
position: 867258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:867332:-1
position: 867332
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:864999-865131:-1:exon

position:864999:-1
position: 864999
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:865131:-1
position: 865131
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:856878-857044:-1:exon

position:856878:-1
position: 856878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:857044:-1
position: 857044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:854465-854672:-1:exon

position:854465:-1
position: 854465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:854672:-1
position: 854672
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:838582-838806:-1:exon

position:838582:-1
position: 838582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:838806:-1
position: 838806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:830293-830437:-1:exon

position:830293:-1
position: 830293
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:830437:-1
position: 830437
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:828715-828819:-1:exon

position:828715:-1
position: 828715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:828819:-1
position: 828819
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:821228-821341:-1:exon

position:821228:-1
position: 821228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:821341:-1
position: 821341
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:817649-817791:-1:exon

position:817649:-1
position: 817649
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:817791:-1
position: 817791
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:801291-802404:-1:exon

position:802404:-1
position: 802404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC129715042
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: LOC129715042
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: unconventional myosin-Id-like
translation: MAEQESSEYGKADFVLLDRLTAEEFLANLRVRFEKNRIYTYIGEVVVSVNPYQQIDLYGKDMIEHYKGRELYERPPHLYAIADAAYKAMKRRAKDTCIVISGESGSGKTEASKYIMQYIAAITNPGQRVEVESVKNTLLKSNCILEAFGNAKTNRNDNSSRFGKYMDINFDFKGDPTGGHINNYLLEKSRVIVQQAGERNFHSFYQLLQGGSDDMLQGLYLQRDVSEYAFTKDGVTAATGTNDKGNFKIVMNAMQVLGFSEDEITAIYKVLATILHLGNLTFETEGDTALVSNGQLLSQIAAVTMTETDTVRKTLLHRTVATGGGDVIEKAHTHQEALYGRDAFAKAIYERLFCWIVERINTVIAVKGYDPRVHGKNTVIGVLDIYGFEIFDSNSFEQFCINYCNEKLQQLFIELILRQEQAEYQREGIEWQHVDYFNNQIIVDLVEQPHKGIISILDEACMTVGKVTDTMLVDTMDVKLGKHAHYTSRKLAPTEKDMEFNKHFRIKHYAGQVTYAVDGFIDKNKDNLYQDFKRLMYNSVNPVLKDMWPEGEMSITEVTKRPLTAATLFRSSMIALVVNLECKEPYYVRCIKPNDQKSPVLFNYERCRHQVEYLGLLENVRVRRAGFAYRQPYHRFLLRYKMTCEYTWPNHLMSTDAEAVRAIIDQHGFQQDVAYGKTKLFIRTPQTLFELETERAEKFPFIVLFLQKIWRGTLARKRCRGMRAVYTIMTHYKTYKVKAYLIEIMRRFQNVRSMSDYGKSVLWPTPPTVLVPFDENMKYLFRRWRARQIVKNIAPSDMPQIKAKMAAMDSFLGRRQDWGVQRTWERDYLASAKDNPEMMSQYVTAVNRLKCKERFNSVLFSAHVRKINRFNKCEDRAILITDLYLYKLEPAKCYKNMKTLPLTQVTGLSVTSGKDQLIIFHTKANDDLVVCLQGNANRIGEVVGVLANHFTNHNLPLLVKVCNPVQCQMRGRQRTVLVEMRIEQTDPDFKKNRTGFTLYWSGI
SIO_010081: LOC129715042
subclass of: SO_0000673
so part of: LOC129715042
location: complement(join(802248..802404,817649..817791,821228..821341,828715..828819,830293..830437,838582..838806,854465..854672,856878..857044,864999..865131,867258..867332,868769..868839,870991..871161,873959..874073,876729..876874,879226..879432,882887..883003,884368..884463,891133..891186,898883..899048,900537..900630,901827..902035,907920..908014))
location: region:802248-908014:-1
so has part: feature:907920-908014:-1:exon
so has part: feature:901827-902035:-1:exon
so has part: feature:900537-900630:-1:exon
so has part: feature:898883-899048:-1:exon
so has part: feature:891133-891186:-1:exon
so has part: feature:884368-884463:-1:exon
so has part: feature:882887-883003:-1:exon
so has part: feature:879226-879432:-1:exon
so has part: feature:876729-876874:-1:exon
so has part: feature:873959-874073:-1:exon
so has part: feature:870991-871161:-1:exon
so has part: feature:868769-868839:-1:exon
so has part: feature:867258-867332:-1:exon
so has part: feature:864999-865131:-1:exon
so has part: feature:856878-857044:-1:exon
so has part: feature:854465-854672:-1:exon
so has part: feature:838582-838806:-1:exon
so has part: feature:830293-830437:-1:exon
so has part: feature:828715-828819:-1:exon
so has part: feature:821228-821341:-1:exon
so has part: feature:817649-817791:-1:exon
so has part: feature:802248-802404:-1:exon

XP_055520850.1
type: Protein
SIO_000068: ncbiprotein

position:802248:-1
position: 802248
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:908014:-1
position: 908014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:907920-908014:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:901827-902035:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:900537-900630:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:898883-899048:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:891133-891186:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:884368-884463:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:882887-883003:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:879226-879432:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:876729-876874:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:873959-874073:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:870991-871161:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:868769-868839:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:867258-867332:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:864999-865131:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:856878-857044:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:854465-854672:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:838582-838806:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:830293-830437:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:828715-828819:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:821228-821341:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:817649-817791:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:802248-802404:-1:exon

LOC129715045
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 7782
gene: LOC129715045
product: RNA-binding protein 43-like, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XR_008726438.1
SIO_010081: LOC129715045
so part of: LOC129715045
location: complement(join(924705..925917,927978..928087,931133..931335,941602..942017))
location: region:924705-942017:-1
so has part: feature:941602-942017:-1:exon
so has part: feature:931133-931335:-1:exon
so has part: feature:927978-928087:-1:exon
so has part: feature:924705-925917:-1:exon

position:924705:-1
position: 924705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:941602-942017:-1:exon

position:941602:-1
position: 941602
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:931133-931335:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:927978-928087:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:924705-925917:-1:exon

LOC129715045
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: LOC129715045
product: RNA-binding protein 43-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST
transcript id: XM_055664878.1
SIO_010081: LOC129715045
subclass of: SO_0000673
so part of: LOC129715045
location: complement(join(924705..925917,927978..928087,931133..931335,941620..942004))
location: region:924705-942004:-1
so has part: feature:941620-942004:-1:exon
so has part: feature:931133-931335:-1:exon
so has part: feature:927978-928087:-1:exon
so has part: feature:924705-925917:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:941620-942004:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:931133-931335:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:927978-928087:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:924705-925917:-1:exon

LOC129715045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: LOC129715045
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: RNA-binding protein 43-like
translation: MKRQDEAQLGAGCCAQQPEETLQRSKKIQVLNVPAILPEQRTLDKLIIHFQARGNGGGEVLDMEYPTTVAGRAFITFAKEEDADNVLKREQILKLDQQDYKLDVREVGGGETTSDTVQVIEFVSTKLDTRDYPSKTARQLIHEHRFQIVSDQGSMVVIRGSFSSLKELRRKLTDLIVPQSTRAVTGSRT
SIO_010081: LOC129715045
subclass of: SO_0000673
so part of: LOC129715045
location: complement(join(925702..925917,927978..928087,931133..931335,941620..941660))
location: region:925702-941660:-1
so has part: feature:941620-941660:-1:exon
so has part: feature:931133-931335:-1:exon
so has part: feature:927978-928087:-1:exon
so has part: feature:925702-925917:-1:exon

XP_055520853.1
type: Protein
SIO_000068: ncbiprotein

position:925702:-1
position: 925702
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:941660:-1
position: 941660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:941620-941660:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:931133-931335:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:927978-928087:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:925702-925917:-1:exon

wnt3a
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: wnt3a
note: wingless-type MMTV integration site family, member 3A; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1055541..1141015
location: region:1055541-1141015:1
so has part: feature:1055541-1141015:1:exon
subclass of: SO_0000010

129715050
type: Gene
SIO_000068: ncbigene

position:1055541:1
position: 1055541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1141015:1
position: 1141015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1055541-1141015:1:exon

wnt3a
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: wnt3a
product: wingless-type MMTV integration site family, member 3A
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 118 Proteins
transcript id: XM_055664882.1
SIO_010081: wnt3a
subclass of: SO_0000673
so part of: wnt3a
location: join(1055541..1055617,1128285..1128526,1138243..1138508,1140026..1141015)
location: region:1055541-1141015:1
so has part: feature:1055541-1055617:1:exon
so has part: feature:1128285-1128526:1:exon
so has part: feature:1138243-1138508:1:exon
so has part: feature:1140026-1141015:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1055541-1055617:1:exon

position:1055617:1
position: 1055617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1128285-1128526:1:exon

position:1128285:1
position: 1128285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1128526:1
position: 1128526
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1138243-1138508:1:exon

position:1138243:1
position: 1138243
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1138508:1
position: 1138508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1140026-1141015:1:exon

position:1140026:1
position: 1140026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

wnt3a
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: wnt3a
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein Wnt-3a
translation: MEMRLFGYYLVLLNVKQVIASYPVWWSLAVRHQYSTLATHPILCGSIPGLVPKQLRFCRNYMEIMPSVAQGVKIGIQECQHQFRGRRWNCTTIEDNLAIFGPVLDKATRESAFVHAVASAGVAFSITRFCAEGTANICGCDGRHKGQPGEGWKWGGCSEDVEFGGMVSREFADARENRPDARSAMNRHNNEAGRMAILDHMHLKCKCHGLSGSCEVKTCWWSQPDFRVIGDYLKDKYDSASEMTVERHRESRGWVETLSPKYALFKAPTERDLVYYDPSPNFCSHNPETGSFGTRHRQCNLTSHGIDGCELLCCGRGHDTRTERRREKCHCIFHWCCHVSCQECTRVYDVHTCK
SIO_010081: wnt3a
subclass of: SO_0000673
so part of: wnt3a
location: join(1055541..1055617,1128285..1128526,1138243..1138508,1140026..1140505)
location: region:1055541-1140505:1
so has part: feature:1055541-1055617:1:exon
so has part: feature:1128285-1128526:1:exon
so has part: feature:1138243-1138508:1:exon
so has part: feature:1140026-1140505:1:exon

XP_055520857.1
type: Protein
SIO_000068: ncbiprotein

position:1140505:1
position: 1140505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1055541-1055617:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1128285-1128526:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1138243-1138508:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1140026-1140505:1:exon

LOC129715051
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: LOC129715051
note: U6 spliceosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(1098130..1098237)
location: region:1098130-1098237:-1
so has part: feature:1098130-1098237:-1:exon
subclass of: SO_0000623

129715051
type: Gene
SIO_000068: ncbigene

position:1098130:-1
position: 1098130
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1098237:-1
position: 1098237
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1098130-1098237:-1:exon

LOC129715051
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 7782
nc RNA class: snRNA
gene: LOC129715051
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.4
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_008726439.1
SIO_010081: LOC129715051
subclass of: SO_0000673
so part of: LOC129715051
location: complement(1098130..1098237)
location: region:1098130-1098237:-1
so has part: feature:1098130-1098237:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1098130-1098237:-1:exon

LOC129715047
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: LOC129715047
note: ADP-ribosylation factor 1; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1272688..1314326
location: region:1272688-1314326:1
so has part: feature:1272688-1314326:1:exon
subclass of: SO_0000010

129715047
type: Gene
SIO_000068: ncbigene

position:1272688:1
position: 1272688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1314326:1
position: 1314326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1272688-1314326:1:exon

LOC129715047
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: LOC129715047
product: ADP-ribosylation factor 1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_055664880.1
SIO_010081: LOC129715047
subclass of: SO_0000673
so part of: LOC129715047
location: join(1272688..1272877,1289431..1289621,1296442..1296552,1302728..1302852,1312592..1314326)
location: region:1272688-1314326:1
so has part: feature:1272688-1272877:1:exon
so has part: feature:1289431-1289621:1:exon
so has part: feature:1296442-1296552:1:exon
so has part: feature:1302728-1302852:1:exon
so has part: feature:1312592-1314326:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1272688-1272877:1:exon

position:1272877:1
position: 1272877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1289431-1289621:1:exon

position:1289431:1
position: 1289431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1289621:1
position: 1289621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1296442-1296552:1:exon

position:1296442:1
position: 1296442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1296552:1
position: 1296552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1302728-1302852:1:exon

position:1302728:1
position: 1302728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1302852:1
position: 1302852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1312592-1314326:1:exon

position:1312592:1
position: 1312592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC129715047
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: LOC129715047
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ADP-ribosylation factor 1
translation: MGAVFSAVFKSMFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKSISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAKEELMRMLAEDELRDAVLLLFANKQDLPNAMNAAEITDKLGLHTLRNRTWYIQATCATSGDGLYEGLDWLSNQLKATK
SIO_010081: LOC129715047
subclass of: SO_0000673
so part of: LOC129715047
location: join(1289474..1289621,1296442..1296552,1302728..1302852,1312592..1312753)
location: region:1289474-1312753:1
so has part: feature:1289474-1289621:1:exon
so has part: feature:1296442-1296552:1:exon
so has part: feature:1302728-1302852:1:exon
so has part: feature:1312592-1312753:1:exon

XP_055520855.1
type: Protein
SIO_000068: ncbiprotein

position:1289474:1
position: 1289474
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1312753:1
position: 1312753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1289474-1289621:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1296442-1296552:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1302728-1302852:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1312592-1312753:1:exon

c49h1orf35
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: c49h1orf35
note: chromosome 49 C1orf35 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1315339..1339341)
location: region:1315339-1339341:-1
so has part: feature:1315339-1339341:-1:exon
subclass of: SO_0000010

129715046
type: Gene
SIO_000068: ncbigene

position:1315339:-1
position: 1315339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1339341:-1
position: 1339341
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1315339-1339341:-1:exon

c49h1orf35
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: c49h1orf35
product: chromosome 49 C1orf35 homolog
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_055664879.1
SIO_010081: c49h1orf35
subclass of: SO_0000673
so part of: c49h1orf35
location: complement(join(1315339..1315749,1318348..1318467,1322371..1322450,1326685..1326757,1329341..1329423,1335310..1335355,1335985..1336135,1339180..1339341))
location: region:1315339-1339341:-1
so has part: feature:1339180-1339341:-1:exon
so has part: feature:1335985-1336135:-1:exon
so has part: feature:1335310-1335355:-1:exon
so has part: feature:1329341-1329423:-1:exon
so has part: feature:1326685-1326757:-1:exon
so has part: feature:1322371-1322450:-1:exon
so has part: feature:1318348-1318467:-1:exon
so has part: feature:1315339-1315749:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1339180-1339341:-1:exon

position:1339180:-1
position: 1339180
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1335985-1336135:-1:exon

position:1335985:-1
position: 1335985
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1336135:-1
position: 1336135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1335310-1335355:-1:exon

position:1335310:-1
position: 1335310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1335355:-1
position: 1335355
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1329341-1329423:-1:exon

position:1329341:-1
position: 1329341
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1329423:-1
position: 1329423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1326685-1326757:-1:exon

position:1326685:-1
position: 1326685
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1326757:-1
position: 1326757
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1322371-1322450:-1:exon

position:1322371:-1
position: 1322371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1322450:-1
position: 1322450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1318348-1318467:-1:exon

position:1318348:-1
position: 1318348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1318467:-1
position: 1318467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1315339-1315749:-1:exon

position:1315749:-1
position: 1315749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

c49h1orf35
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: c49h1orf35
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: multiple myeloma tumor-associated protein 2
translation: MGSARGGVRGGQDQFTWEEVKADKHRENYLGNSLMAPVGRWQKGRDLTWYAKGKQTEAAQSRAEELTAVRKAEQEALMAALGYKNPKRKPTGVTKEELAEVCKREGVDPDSKDVDRVLGLGSSRGTSSRMTLTKEDREAAKLGLAIFTHHKCSEEEESASQKRKPEESAELETERSVSHKRHKKEKKHKREKKEKKKKKHKSQEKSCPKTKHRDRKHHRSEQEVDEQRR
SIO_010081: c49h1orf35
subclass of: SO_0000673
so part of: c49h1orf35
location: complement(join(1315704..1315749,1318348..1318467,1322371..1322450,1326685..1326757,1329341..1329423,1335310..1335355,1335985..1336135,1339180..1339270))
location: region:1315704-1339270:-1
so has part: feature:1339180-1339270:-1:exon
so has part: feature:1335985-1336135:-1:exon
so has part: feature:1335310-1335355:-1:exon
so has part: feature:1329341-1329423:-1:exon
so has part: feature:1326685-1326757:-1:exon
so has part: feature:1322371-1322450:-1:exon
so has part: feature:1318348-1318467:-1:exon
so has part: feature:1315704-1315749:-1:exon

XP_055520854.1
type: Protein
SIO_000068: ncbiprotein

position:1315704:-1
position: 1315704
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1339270:-1
position: 1339270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1339180-1339270:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1335985-1336135:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1335310-1335355:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1329341-1329423:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1326685-1326757:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1322371-1322450:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1318348-1318467:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1315704-1315749:-1:exon