Leucoraja erinacea ecotype New England chromosome 45, Leri_hhj_1, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Rajiformes; Rajidae; Leucoraja.
REFSEQ INFORMATION: The reference sequence is identical to\nCM054051.1.\nAssembly name: Leri_hhj_1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Okinawa Institute of Science\nand Technology on 2023/02/22. The original whole-genome shotgun\nproject has the accession JAMYXN000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Okinawa Institute of Science and\n Technology\nAssembly Date :: 21-FEB-2019\nAssembly Method :: dbg2olc v. 20160205\nAssembly Name :: Leri_hhj_1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 150.0x\nSequencing Technology :: Illumina; PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_028641065.1-RS_2023_04\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 04/21/2023\n##Genome-Annotation-Data-END##
neuroligin-4, X-linked-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
Derived by automated computational analysis using gene prediction method: Gnomon.
pseudouridine 5'-phosphatase; Derived by automated computational analysis using gene prediction method: Gnomon.
pseudouridine 5'-phosphatase, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
pseudouridine 5'-phosphatase, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
pseudouridine 5'-phosphatase, transcript variant X3
steroid sulfatase (microsomal), isozyme S; Derived by automated computational analysis using gene prediction method: Gnomon.
steroid sulfatase (microsomal), isozyme S, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 Proteins
steroid sulfatase (microsomal), isozyme S, transcript variant X2
uncharacterized LOC129715000; Derived by automated computational analysis using gene prediction method: Gnomon.
patatin-like phospholipase domain containing 4; Derived by automated computational analysis using gene prediction method: Gnomon.
patatin-like phospholipase domain containing 4, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
patatin-like phospholipase domain containing 4, transcript variant X2
patatin-like phospholipase domain containing 4, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
patatin-like phospholipase domain containing 4, transcript variant X4
patatin-like phospholipase domain-containing protein 4
chloride channel, nucleotide-sensitive, 1A; Derived by automated computational analysis using gene prediction method: Gnomon.
chloride channel, nucleotide-sensitive, 1A, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 5 Proteins
chloride channel, nucleotide-sensitive, 1A, transcript variant X3
COORDINATES: polyA evidence [ECO:0006239]
chloride channel, nucleotide-sensitive, 1A, transcript variant X2
aquaporin 11; Derived by automated computational analysis using gene prediction method: Gnomon.
proline-rich protein HaeIII subfamily 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
proline-rich protein HaeIII subfamily 1-like
p21 protein (Cdc42/Rac)-activated kinase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
p21 protein (Cdc42/Rac)-activated kinase 1, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 35 Proteins
p21 protein (Cdc42/Rac)-activated kinase 1, transcript variant X2
p21 protein (Cdc42/Rac)-activated kinase 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 36 Proteins
p21 protein (Cdc42/Rac)-activated kinase 1, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
serine/threonine-protein kinase PAK 1 isoform X1
serine/threonine-protein kinase PAK 1 isoform X2
p21 protein (Cdc42/Rac)-activated kinase 1, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
serine/threonine-protein kinase PAK 1 isoform X3
myosin VIIAa; Derived by automated computational analysis using gene prediction method: Gnomon.
calpain 5a; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
alkaline ceramidase 3; Derived by automated computational analysis using gene prediction method: Gnomon.
alkaline ceramidase 3, transcript variant X1
alkaline ceramidase 3, transcript variant X2
tsukushi small leucine rich proteoglycan homolog (Xenopus laevis); Derived by automated computational analysis using gene prediction method: Gnomon.
tsukushi small leucine rich proteoglycan homolog (Xenopus laevis)
transfer RNA glutamic acid (anticodon UUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
guanylate cyclase 2F, retinal; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins