Leucoraja erinacea ecotype New England chromosome 45, Leri_hhj_1, whole genome shotgun sequence.
type: Entry
definition: Leucoraja erinacea ecotype New England chromosome 45, Leri_hhj_1, whole genome shotgun sequence.
sequence version: NC_073421.1
sequence date: 2023-04-27
sequence: sequence
division: CON
label: NC_073421.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA955276
dblink: SAMN23457310
keyword: WGS
keyword: RefSeq
source: Leucoraja erinacea (little skate)
organism: Leucoraja erinacea
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Rajiformes; Rajidae; Leucoraja.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM054051.1.\nAssembly name: Leri_hhj_1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Okinawa Institute of Science\nand Technology on 2023/02/22. The original whole-genome shotgun\nproject has the accession JAMYXN000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Okinawa Institute of Science and\n Technology\nAssembly Date :: 21-FEB-2019\nAssembly Method :: dbg2olc v. 20160205\nAssembly Name :: Leri_hhj_1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 150.0x\nSequencing Technology :: Illumina; PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_028641065.1-RS_2023_04\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 04/21/2023\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 1497180
topology: linear
so has quality: SO_0000987
location: 1..1497180
location: region:1-1497180:1
RO_0002162: 7782

NC_073421
type: RefSeq
SIO_000068: refseq

PRJNA955276
type: BioProject
SIO_000068: bioproject

SAMN23457310
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1497180:1
position: 1497180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-1497180:1:source
so part of: sequence
organism: Leucoraja erinacea
mol type: genomic DNA
specimen voucher: LE0618
chromosome: 45
tissue type: liver
dev stage: adult
ecotype: New England

7782
type: Taxonomy
SIO_000068: taxonomy

LOC129715003
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: LOC129715003
note: neuroligin-4, X-linked-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(60509..80101)
location: region:60509-80101:-1
so has part: feature:60509-80101:-1:exon
subclass of: SO_0000010

129715003
type: Gene
SIO_000068: ncbigene

position:60509:-1
position: 60509
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:80101:-1
position: 80101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:60509-80101:-1:exon

LOC129715003
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: LOC129715003
product: neuroligin-4, X-linked-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transcript id: XM_055664818.1
SIO_010081: LOC129715003
subclass of: SO_0000673
so part of: LOC129715003
location: complement(join(60509..62612,79576..80101))
location: region:60509-80101:-1
so has part: feature:79576-80101:-1:exon
so has part: feature:60509-62612:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:79576-80101:-1:exon

position:79576:-1
position: 79576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:60509-62612:-1:exon

position:62612:-1
position: 62612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC129715003
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: LOC129715003
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: neuroligin-4, X-linked-like
translation: MSSSNGLPWLAFVLGPSLKVKSLLWITSVVLRLGLLACQDNFPVVTTNYGKLRGVRNPLPNEILGPVDQYLGIPYASAPTGERRFQHPESPSSWTGVRNATHFAAVCPQNIHGILPDVMLPVWFTANLDIVASYIQDQSEDCLYLNVYVPTENGKSRSAPGAPSSNGKRRKREKELGERREEKM
SIO_010081: LOC129715003
subclass of: SO_0000673
so part of: LOC129715003
location: complement(61786..62340)
location: region:61786-62340:-1
so has part: feature:61786-62340:-1:exon

XP_055520793.1
type: Protein
SIO_000068: ncbiprotein

position:61786:-1
position: 61786
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:62340:-1
position: 62340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:61786-62340:-1:exon

pudp
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: pudp
note: pseudouridine 5'-phosphatase; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(240173..344385)
location: region:240173-344385:-1
so has part: feature:240173-344385:-1:exon
subclass of: SO_0000010

129715001
type: Gene
SIO_000068: ncbigene

position:240173:-1
position: 240173
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:344385:-1
position: 344385
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:240173-344385:-1:exon

pudp
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: pudp
product: pseudouridine 5'-phosphatase, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
transcript id: XM_055664816.1
SIO_010081: pudp
subclass of: SO_0000673
so part of: pudp
location: complement(join(240173..240549,324121..324350,330122..330340,344231..344385))
location: region:240173-344385:-1
so has part: feature:344231-344385:-1:exon
so has part: feature:330122-330340:-1:exon
so has part: feature:324121-324350:-1:exon
so has part: feature:240173-240549:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:344231-344385:-1:exon

position:344231:-1
position: 344231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:330122-330340:-1:exon

position:330122:-1
position: 330122
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:330340:-1
position: 330340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:324121-324350:-1:exon

position:324121:-1
position: 324121
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:324350:-1
position: 324350
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:240173-240549:-1:exon

position:240549:-1
position: 240549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

pudp
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: pudp
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pseudouridine-5'-phosphatase isoform X2
translation: MAAAARCSPYRPVPHIIFHIDGLLLDTERLYTLAFDEVCSRYGKKFTWDLKGLIMGMRALDGAAVICEKLELPISPEELTKQAAVLQNNLFPTAELMPGAKTLVCHLIKHCVPIAVGTSSLTKMFELKTSRHKEFFTLFHHIVRGDHPEVKNSKPHPDTFLVSAKEFDPPVCPADMLPDPLSCSFCHPNELKNIFKYCFTTA
SIO_010081: pudp
subclass of: SO_0000673
so part of: pudp
location: complement(join(240466..240549,324121..324350,330122..330340,344231..344306))
location: region:240466-344306:-1
so has part: feature:344231-344306:-1:exon
so has part: feature:330122-330340:-1:exon
so has part: feature:324121-324350:-1:exon
so has part: feature:240466-240549:-1:exon

XP_055520791.1
type: Protein
SIO_000068: ncbiprotein

position:240466:-1
position: 240466
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:344306:-1
position: 344306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:344231-344306:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:330122-330340:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:324121-324350:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:240466-240549:-1:exon

pudp
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: pudp
product: pseudouridine 5'-phosphatase, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
transcript id: XM_055664815.1
SIO_010081: pudp
subclass of: SO_0000673
so part of: pudp
location: complement(join(285552..286081,324121..324350,330122..330340,344231..344385))
location: region:285552-344385:-1
so has part: feature:344231-344385:-1:exon
so has part: feature:330122-330340:-1:exon
so has part: feature:324121-324350:-1:exon
so has part: feature:285552-286081:-1:exon

position:285552:-1
position: 285552
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:344231-344385:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:330122-330340:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:324121-324350:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:285552-286081:-1:exon

position:286081:-1
position: 286081
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

pudp
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: pudp
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pseudouridine-5'-phosphatase isoform X1
translation: MAAAARCSPYRPVPHIIFHIDGLLLDTERLYTLAFDEVCSRYGKKFTWDLKGLIMGMRALDGAAVICEKLELPISPEELTKQAAVLQNNLFPTAELMPGAKTLVCHLIKHCVPIAVGTSSLTKMFELKTSRHKEFFTLFHHIVRGDHPEVKNSKPHPDTFLVSAKEFDPPVCPADCLVFEDSPNGVTAALTAGMQVVHVPDPQLDPELTKSATLVLKSLEDFKPELFGLPAYD
SIO_010081: pudp
subclass of: SO_0000673
so part of: pudp
location: complement(join(285905..286081,324121..324350,330122..330340,344231..344306))
location: region:285905-344306:-1
so has part: feature:344231-344306:-1:exon
so has part: feature:330122-330340:-1:exon
so has part: feature:324121-324350:-1:exon
so has part: feature:285905-286081:-1:exon

XP_055520790.1
type: Protein
SIO_000068: ncbiprotein

position:285905:-1
position: 285905
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:344231-344306:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:330122-330340:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:324121-324350:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:285905-286081:-1:exon

pudp
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: pudp
product: pseudouridine 5'-phosphatase, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
transcript id: XM_055664817.1
SIO_010081: pudp
subclass of: SO_0000673
so part of: pudp
location: complement(join(294568..294816,324121..324350,330122..330340,344231..344385))
location: region:294568-344385:-1
so has part: feature:344231-344385:-1:exon
so has part: feature:330122-330340:-1:exon
so has part: feature:324121-324350:-1:exon
so has part: feature:294568-294816:-1:exon

position:294568:-1
position: 294568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:344231-344385:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:330122-330340:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:324121-324350:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:294568-294816:-1:exon

position:294816:-1
position: 294816
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

pudp
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: pudp
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pseudouridine-5'-phosphatase isoform X3
translation: MAAAARCSPYRPVPHIIFHIDGLLLDTERLYTLAFDEVCSRYGKKFTWDLKGLIMGMRALDGAAVICEKLELPISPEELTKQAAVLQNNLFPTAELMPGAKTLVCHLIKHCVPIAVGTSSLTKMFELKTSRHKEFFTLFHHIVRGDHPEVKNSKPHPDTFLVSAKEFDPPVCPADFIGDRSGIRPLGPSSLVWPFNHS
SIO_010081: pudp
subclass of: SO_0000673
so part of: pudp
location: complement(join(294745..294816,324121..324350,330122..330340,344231..344306))
location: region:294745-344306:-1
so has part: feature:344231-344306:-1:exon
so has part: feature:330122-330340:-1:exon
so has part: feature:324121-324350:-1:exon
so has part: feature:294745-294816:-1:exon

XP_055520792.1
type: Protein
SIO_000068: ncbiprotein

position:294745:-1
position: 294745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:344231-344306:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:330122-330340:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:324121-324350:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:294745-294816:-1:exon

sts
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: sts
note: steroid sulfatase (microsomal), isozyme S; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 350120..396788
location: region:350120-396788:1
so has part: feature:350120-396788:1:exon
subclass of: SO_0000010

129714994
type: Gene
SIO_000068: ncbigene

position:350120:1
position: 350120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:396788:1
position: 396788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:350120-396788:1:exon

sts
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: sts
product: steroid sulfatase (microsomal), isozyme S, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 Proteins
transcript id: XM_055664800.1
SIO_010081: sts
subclass of: SO_0000673
so part of: sts
location: join(350120..351025,353925..354074,362120..362241,364595..364717,367672..368095,374831..374967,383388..383525,387887..388046,390309..390430,395920..396788)
location: region:350120-396788:1
so has part: feature:350120-351025:1:exon
so has part: feature:353925-354074:1:exon
so has part: feature:362120-362241:1:exon
so has part: feature:364595-364717:1:exon
so has part: feature:367672-368095:1:exon
so has part: feature:374831-374967:1:exon
so has part: feature:383388-383525:1:exon
so has part: feature:387887-388046:1:exon
so has part: feature:390309-390430:1:exon
so has part: feature:395920-396788:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:350120-351025:1:exon

position:351025:1
position: 351025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:353925-354074:1:exon

position:353925:1
position: 353925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:354074:1
position: 354074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:362120-362241:1:exon

position:362120:1
position: 362120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:362241:1
position: 362241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:364595-364717:1:exon

position:364595:1
position: 364595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:364717:1
position: 364717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:367672-368095:1:exon

position:367672:1
position: 367672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:368095:1
position: 368095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:374831-374967:1:exon

position:374831:1
position: 374831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:374967:1
position: 374967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:383388-383525:1:exon

position:383388:1
position: 383388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:383525:1
position: 383525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:387887-388046:1:exon

position:387887:1
position: 387887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:388046:1
position: 388046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:390309-390430:1:exon

position:390309:1
position: 390309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:390430:1
position: 390430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:395920-396788:1:exon

position:395920:1
position: 395920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

sts
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: sts
product: steroid sulfatase (microsomal), isozyme S, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 Proteins
transcript id: XM_055664801.1
SIO_010081: sts
subclass of: SO_0000673
so part of: sts
location: join(351794..352076,353925..354074,362120..362241,364595..364717,367672..368095,374831..374967,383388..383525,387887..388046,390309..390430,395920..396788)
location: region:351794-396788:1
so has part: feature:351794-352076:1:exon
so has part: feature:353925-354074:1:exon
so has part: feature:362120-362241:1:exon
so has part: feature:364595-364717:1:exon
so has part: feature:367672-368095:1:exon
so has part: feature:374831-374967:1:exon
so has part: feature:383388-383525:1:exon
so has part: feature:387887-388046:1:exon
so has part: feature:390309-390430:1:exon
so has part: feature:395920-396788:1:exon

position:351794:1
position: 351794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:351794-352076:1:exon

position:352076:1
position: 352076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:353925-354074:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:362120-362241:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:364595-364717:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:367672-368095:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:374831-374967:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:383388-383525:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:387887-388046:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:390309-390430:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:395920-396788:1:exon

sts
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: sts
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: steryl-sulfatase
translation: MNILAVFLLLHLAQTILGQGADQRPNYVIFMADDLGIGDLGCYGNTTLRTPHIDSLAHDGVLLTQHIAAASLCTPSRAAFLTGRYPVRSGMASFSRIGVFLFTAGSGGLPTNETTFAKLLKGQGYSTALIGKWHLGLNCEASGDHCHHPANHGFDYFYGLPLTNMRNCKPNSGDIFVAGARRAVRAAVQLVTLALFTLLLLDYLALLTVPWRALGFVLLAAALLIGAVVLFLSQFRQLNCILMQNDKIIQQPFTFDSLTQRLTNQATSFMERNLGRPFLLFTSYLHVHTALHASQEFLGKSKHGLYGDSVEEMDWSVGEILASLERLNLSQRTLVYFTSDQGAHVEEISDEGEMHGGWNGIYKGGKATNWEGGIRVPGLLRWPGVLAAGKEIHGPTSNMDLFPTIAKLAGATMPSDRIIDGRDLMPLLRDEALWSEHEFLFHYCNGYLSAARWHPRNSSAVWKVHFFTPNFYPEGSQGCFDTHVCLCYGRDVSHHSPPLLYDLLGDPGETRPLTPASEPRHQRILEVISSAVEDHRRTLGPVPDQLSVGNLVWKPWLQPCCSSSWQLCHCDHREGGKSTPRDGDSPSQTPA
SIO_010081: sts
subclass of: SO_0000673
so part of: sts
location: join(353929..354074,362120..362241,364595..364717,367672..368095,374831..374967,383388..383525,387887..388046,390309..390430,395920..396323)
location: region:353929-396323:1
so has part: feature:353929-354074:1:exon
so has part: feature:362120-362241:1:exon
so has part: feature:364595-364717:1:exon
so has part: feature:367672-368095:1:exon
so has part: feature:374831-374967:1:exon
so has part: feature:383388-383525:1:exon
so has part: feature:387887-388046:1:exon
so has part: feature:390309-390430:1:exon
so has part: feature:395920-396323:1:exon

XP_055520775.1
type: Protein
SIO_000068: ncbiprotein

position:353929:1
position: 353929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:396323:1
position: 396323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:353929-354074:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:362120-362241:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:364595-364717:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:367672-368095:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:374831-374967:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:383388-383525:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:387887-388046:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:390309-390430:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:395920-396323:1:exon

sts
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: sts
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: steryl-sulfatase
translation: MNILAVFLLLHLAQTILGQGADQRPNYVIFMADDLGIGDLGCYGNTTLRTPHIDSLAHDGVLLTQHIAAASLCTPSRAAFLTGRYPVRSGMASFSRIGVFLFTAGSGGLPTNETTFAKLLKGQGYSTALIGKWHLGLNCEASGDHCHHPANHGFDYFYGLPLTNMRNCKPNSGDIFVAGARRAVRAAVQLVTLALFTLLLLDYLALLTVPWRALGFVLLAAALLIGAVVLFLSQFRQLNCILMQNDKIIQQPFTFDSLTQRLTNQATSFMERNLGRPFLLFTSYLHVHTALHASQEFLGKSKHGLYGDSVEEMDWSVGEILASLERLNLSQRTLVYFTSDQGAHVEEISDEGEMHGGWNGIYKGGKATNWEGGIRVPGLLRWPGVLAAGKEIHGPTSNMDLFPTIAKLAGATMPSDRIIDGRDLMPLLRDEALWSEHEFLFHYCNGYLSAARWHPRNSSAVWKVHFFTPNFYPEGSQGCFDTHVCLCYGRDVSHHSPPLLYDLLGDPGETRPLTPASEPRHQRILEVISSAVEDHRRTLGPVPDQLSVGNLVWKPWLQPCCSSSWQLCHCDHREGGKSTPRDGDSPSQTPA
SIO_010081: sts
subclass of: SO_0000673
so part of: sts
location: join(353929..354074,362120..362241,364595..364717,367672..368095,374831..374967,383388..383525,387887..388046,390309..390430,395920..396323)
location: region:353929-396323:1
so has part: feature:353929-354074:1:exon
so has part: feature:362120-362241:1:exon
so has part: feature:364595-364717:1:exon
so has part: feature:367672-368095:1:exon
so has part: feature:374831-374967:1:exon
so has part: feature:383388-383525:1:exon
so has part: feature:387887-388046:1:exon
so has part: feature:390309-390430:1:exon
so has part: feature:395920-396323:1:exon

XP_055520776.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:353929-354074:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:362120-362241:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:364595-364717:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:367672-368095:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:374831-374967:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:383388-383525:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:387887-388046:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:390309-390430:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:395920-396323:1:exon

LOC129715000
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: LOC129715000
note: uncharacterized LOC129715000; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 486240..504864
location: region:486240-504864:1
so has part: feature:486240-504864:1:exon
subclass of: SO_0000010

129715000
type: Gene
SIO_000068: ncbigene

position:486240:1
position: 486240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:504864:1
position: 504864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:486240-504864:1:exon

LOC129715000
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: LOC129715000
product: uncharacterized LOC129715000
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XM_055664814.1
SIO_010081: LOC129715000
subclass of: SO_0000673
so part of: LOC129715000
location: join(486240..486660,496718..497074,500344..500456,504524..504864)
location: region:486240-504864:1
so has part: feature:486240-486660:1:exon
so has part: feature:496718-497074:1:exon
so has part: feature:500344-500456:1:exon
so has part: feature:504524-504864:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:486240-486660:1:exon

position:486660:1
position: 486660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:496718-497074:1:exon

position:496718:1
position: 496718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:497074:1
position: 497074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:500344-500456:1:exon

position:500344:1
position: 500344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:500456:1
position: 500456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:504524-504864:1:exon

position:504524:1
position: 504524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC129715000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: LOC129715000
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC129715000
translation: MLALMRSLILMATISSLAGYEGTLSVRQHPGEVTSSVGRTVMVVCGAYYESQIPAHVDVYWYKGEPSPQNALTNLMESGSPRGGRLYLHGSHSNHYRILVISNLTLADAGVYTCEVSVPLPPPLVSQHGNGTRLHVEEATSCVALKTPTVMKQAIIIPALAIYSMVLTIAVMVLAVLLRFHMKSKGTLITKEISRGPEDPQPNTCRGHTRSLAGDRSRETHPQEYEDMTVFRTMNQR
SIO_010081: LOC129715000
subclass of: SO_0000673
so part of: LOC129715000
location: join(486606..486660,496718..497074,500344..500456,504524..504712)
location: region:486606-504712:1
so has part: feature:486606-486660:1:exon
so has part: feature:496718-497074:1:exon
so has part: feature:500344-500456:1:exon
so has part: feature:504524-504712:1:exon

XP_055520789.1
type: Protein
SIO_000068: ncbiprotein

position:486606:1
position: 486606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:504712:1
position: 504712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:486606-486660:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:496718-497074:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:500344-500456:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:504524-504712:1:exon

pnpla4
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: pnpla4
note: patatin-like phospholipase domain containing 4; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(516419..549214)
location: region:516419-549214:-1
so has part: feature:516419-549214:-1:exon
subclass of: SO_0000010

129714997
type: Gene
SIO_000068: ncbigene

position:516419:-1
position: 516419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:549214:-1
position: 549214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:516419-549214:-1:exon

pnpla4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: pnpla4
product: patatin-like phospholipase domain containing 4, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
transcript id: XM_055664805.1
SIO_010081: pnpla4
subclass of: SO_0000673
so part of: pnpla4
location: complement(join(516419..516574,518725..518877,530677..530742,533453..533588,534790..534884,541073..541251,549085..549214))
location: region:516419-549214:-1
so has part: feature:549085-549214:-1:exon
so has part: feature:541073-541251:-1:exon
so has part: feature:534790-534884:-1:exon
so has part: feature:533453-533588:-1:exon
so has part: feature:530677-530742:-1:exon
so has part: feature:518725-518877:-1:exon
so has part: feature:516419-516574:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:549085-549214:-1:exon

position:549085:-1
position: 549085
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:541073-541251:-1:exon

position:541073:-1
position: 541073
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:541251:-1
position: 541251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:534790-534884:-1:exon

position:534790:-1
position: 534790
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:534884:-1
position: 534884
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:533453-533588:-1:exon

position:533453:-1
position: 533453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:533588:-1
position: 533588
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:530677-530742:-1:exon

position:530677:-1
position: 530677
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:530742:-1
position: 530742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:518725-518877:-1:exon

position:518725:-1
position: 518725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:518877:-1
position: 518877
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:516419-516574:-1:exon

position:516574:-1
position: 516574
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

pnpla4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: pnpla4
product: patatin-like phospholipase domain containing 4, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
transcript id: XM_055664804.1
SIO_010081: pnpla4
subclass of: SO_0000673
so part of: pnpla4
location: complement(join(516419..516574,518725..518877,530677..530742,533453..533588,534790..534884,541073..541251,548774..548902))
location: region:516419-548902:-1
so has part: feature:548774-548902:-1:exon
so has part: feature:541073-541251:-1:exon
so has part: feature:534790-534884:-1:exon
so has part: feature:533453-533588:-1:exon
so has part: feature:530677-530742:-1:exon
so has part: feature:518725-518877:-1:exon
so has part: feature:516419-516574:-1:exon

position:548902:-1
position: 548902
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:548774-548902:-1:exon

position:548774:-1
position: 548774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:541073-541251:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:534790-534884:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:533453-533588:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:530677-530742:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:518725-518877:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:516419-516574:-1:exon

pnpla4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: pnpla4
product: patatin-like phospholipase domain containing 4, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
transcript id: XM_055664803.1
SIO_010081: pnpla4
subclass of: SO_0000673
so part of: pnpla4
location: complement(join(516419..516574,518725..518877,530677..530742,533453..533588,534790..534884,541073..541251,548744..548895))
location: region:516419-548895:-1
so has part: feature:548744-548895:-1:exon
so has part: feature:541073-541251:-1:exon
so has part: feature:534790-534884:-1:exon
so has part: feature:533453-533588:-1:exon
so has part: feature:530677-530742:-1:exon
so has part: feature:518725-518877:-1:exon
so has part: feature:516419-516574:-1:exon

position:548895:-1
position: 548895
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:548744-548895:-1:exon

position:548744:-1
position: 548744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:541073-541251:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:534790-534884:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:533453-533588:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:530677-530742:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:518725-518877:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:516419-516574:-1:exon

pnpla4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: pnpla4
product: patatin-like phospholipase domain containing 4, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
transcript id: XM_055664806.1
SIO_010081: pnpla4
subclass of: SO_0000673
so part of: pnpla4
location: complement(join(516419..516574,518725..518877,530677..530742,533453..533588,534790..534884,541073..541251,544797..544815))
location: region:516419-544815:-1
so has part: feature:544797-544815:-1:exon
so has part: feature:541073-541251:-1:exon
so has part: feature:534790-534884:-1:exon
so has part: feature:533453-533588:-1:exon
so has part: feature:530677-530742:-1:exon
so has part: feature:518725-518877:-1:exon
so has part: feature:516419-516574:-1:exon

position:544815:-1
position: 544815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:544797-544815:-1:exon

position:544797:-1
position: 544797
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:541073-541251:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:534790-534884:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:533453-533588:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:530677-530742:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:518725-518877:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:516419-516574:-1:exon

pnpla4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: pnpla4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: patatin-like phospholipase domain-containing protein 4
translation: MTHLTFSAGGFMAIYHLGAAVALHRHGSRLLSKIQNYAGASGGALVAAVLLAQPETLEQCKEFTFEFAADVRQQMFGAITPGYDFMKLLREGMNSILTADAHEEAHGRLHVSVTNAKTLQNSLISSFPTRDDLMTVLLASSFVPLYSGIKAVKYKGESWIDGGLTNRLPILSDGRTLTVSPFSGRLDICPQDSDQNNFYISIAKQDFIFSVANFVRLSHALFPPSRERMESLYHKGFDDAMMFLQNKNCFQ
SIO_010081: pnpla4
subclass of: SO_0000673
so part of: pnpla4
location: complement(join(516443..516574,518725..518877,530677..530742,533453..533588,534790..534884,541073..541246))
location: region:516443-541246:-1
so has part: feature:541073-541246:-1:exon
so has part: feature:534790-534884:-1:exon
so has part: feature:533453-533588:-1:exon
so has part: feature:530677-530742:-1:exon
so has part: feature:518725-518877:-1:exon
so has part: feature:516443-516574:-1:exon

XP_055520778.1
type: Protein
SIO_000068: ncbiprotein

position:516443:-1
position: 516443
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:541246:-1
position: 541246
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:541073-541246:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:534790-534884:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:533453-533588:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:530677-530742:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:518725-518877:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:516443-516574:-1:exon

pnpla4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: pnpla4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: patatin-like phospholipase domain-containing protein 4
translation: MTHLTFSAGGFMAIYHLGAAVALHRHGSRLLSKIQNYAGASGGALVAAVLLAQPETLEQCKEFTFEFAADVRQQMFGAITPGYDFMKLLREGMNSILTADAHEEAHGRLHVSVTNAKTLQNSLISSFPTRDDLMTVLLASSFVPLYSGIKAVKYKGESWIDGGLTNRLPILSDGRTLTVSPFSGRLDICPQDSDQNNFYISIAKQDFIFSVANFVRLSHALFPPSRERMESLYHKGFDDAMMFLQNKNCFQ
SIO_010081: pnpla4
subclass of: SO_0000673
so part of: pnpla4
location: complement(join(516443..516574,518725..518877,530677..530742,533453..533588,534790..534884,541073..541246))
location: region:516443-541246:-1
so has part: feature:541073-541246:-1:exon
so has part: feature:534790-534884:-1:exon
so has part: feature:533453-533588:-1:exon
so has part: feature:530677-530742:-1:exon
so has part: feature:518725-518877:-1:exon
so has part: feature:516443-516574:-1:exon

XP_055520779.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:541073-541246:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:534790-534884:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:533453-533588:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:530677-530742:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:518725-518877:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:516443-516574:-1:exon

pnpla4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: pnpla4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: patatin-like phospholipase domain-containing protein 4
translation: MTHLTFSAGGFMAIYHLGAAVALHRHGSRLLSKIQNYAGASGGALVAAVLLAQPETLEQCKEFTFEFAADVRQQMFGAITPGYDFMKLLREGMNSILTADAHEEAHGRLHVSVTNAKTLQNSLISSFPTRDDLMTVLLASSFVPLYSGIKAVKYKGESWIDGGLTNRLPILSDGRTLTVSPFSGRLDICPQDSDQNNFYISIAKQDFIFSVANFVRLSHALFPPSRERMESLYHKGFDDAMMFLQNKNCFQ
SIO_010081: pnpla4
subclass of: SO_0000673
so part of: pnpla4
location: complement(join(516443..516574,518725..518877,530677..530742,533453..533588,534790..534884,541073..541246))
location: region:516443-541246:-1
so has part: feature:541073-541246:-1:exon
so has part: feature:534790-534884:-1:exon
so has part: feature:533453-533588:-1:exon
so has part: feature:530677-530742:-1:exon
so has part: feature:518725-518877:-1:exon
so has part: feature:516443-516574:-1:exon

XP_055520780.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:541073-541246:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:534790-534884:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:533453-533588:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:530677-530742:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:518725-518877:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:516443-516574:-1:exon

pnpla4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: pnpla4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: patatin-like phospholipase domain-containing protein 4
translation: MTHLTFSAGGFMAIYHLGAAVALHRHGSRLLSKIQNYAGASGGALVAAVLLAQPETLEQCKEFTFEFAADVRQQMFGAITPGYDFMKLLREGMNSILTADAHEEAHGRLHVSVTNAKTLQNSLISSFPTRDDLMTVLLASSFVPLYSGIKAVKYKGESWIDGGLTNRLPILSDGRTLTVSPFSGRLDICPQDSDQNNFYISIAKQDFIFSVANFVRLSHALFPPSRERMESLYHKGFDDAMMFLQNKNCFQ
SIO_010081: pnpla4
subclass of: SO_0000673
so part of: pnpla4
location: complement(join(516443..516574,518725..518877,530677..530742,533453..533588,534790..534884,541073..541246))
location: region:516443-541246:-1
so has part: feature:541073-541246:-1:exon
so has part: feature:534790-534884:-1:exon
so has part: feature:533453-533588:-1:exon
so has part: feature:530677-530742:-1:exon
so has part: feature:518725-518877:-1:exon
so has part: feature:516443-516574:-1:exon

XP_055520781.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:541073-541246:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:534790-534884:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:533453-533588:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:530677-530742:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:518725-518877:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:516443-516574:-1:exon

clns1a
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: clns1a
note: chloride channel, nucleotide-sensitive, 1A; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 555389..580986
location: region:555389-580986:1
so has part: feature:555389-580986:1:exon
subclass of: SO_0000010

129715007
type: Gene
SIO_000068: ncbigene

position:555389:1
position: 555389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:580986:1
position: 580986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:555389-580986:1:exon

clns1a
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: clns1a
product: chloride channel, nucleotide-sensitive, 1A, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 5 Proteins
transcript id: XM_055664824.1
SIO_010081: clns1a
subclass of: SO_0000673
so part of: clns1a
location: join(555389..555678,559333..559469,560691..560807,562569..562694,570402..570578,571443..571513)
location: region:555389-571513:1
so has part: feature:555389-555678:1:exon
so has part: feature:559333-559469:1:exon
so has part: feature:560691-560807:1:exon
so has part: feature:562569-562694:1:exon
so has part: feature:570402-570578:1:exon
so has part: feature:571443-571513:1:exon

position:571513:1
position: 571513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:555389-555678:1:exon

position:555678:1
position: 555678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:559333-559469:1:exon

position:559333:1
position: 559333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:559469:1
position: 559469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:560691-560807:1:exon

position:560691:1
position: 560691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:560807:1
position: 560807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:562569-562694:1:exon

position:562569:1
position: 562569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:562694:1
position: 562694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:570402-570578:1:exon

position:570402:1
position: 570402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:570578:1
position: 570578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:571443-571513:1:exon

position:571443:1
position: 571443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

clns1a
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: clns1a
product: chloride channel, nucleotide-sensitive, 1A, transcript variant X3
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_055664826.1
SIO_010081: clns1a
subclass of: SO_0000673
so part of: clns1a
location: join(555390..555678,559333..559469,560691..560807,562569..562694,570402..570578,580499..580986)
location: region:555390-580986:1
so has part: feature:555390-555678:1:exon
so has part: feature:559333-559469:1:exon
so has part: feature:560691-560807:1:exon
so has part: feature:562569-562694:1:exon
so has part: feature:570402-570578:1:exon
so has part: feature:580499-580986:1:exon

position:555390:1
position: 555390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:555390-555678:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:559333-559469:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:560691-560807:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:562569-562694:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:570402-570578:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:580499-580986:1:exon

position:580499:1
position: 580499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

clns1a
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: clns1a
product: chloride channel, nucleotide-sensitive, 1A, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_055664825.1
SIO_010081: clns1a
subclass of: SO_0000673
so part of: clns1a
location: join(555395..555678,559333..559469,560691..560807,562569..562694,570402..570578,571443..571509,580499..580986)
location: region:555395-580986:1
so has part: feature:555395-555678:1:exon
so has part: feature:559333-559469:1:exon
so has part: feature:560691-560807:1:exon
so has part: feature:562569-562694:1:exon
so has part: feature:570402-570578:1:exon
so has part: feature:571443-571509:1:exon
so has part: feature:580499-580986:1:exon

position:555395:1
position: 555395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:555395-555678:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:559333-559469:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:560691-560807:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:562569-562694:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:570402-570578:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:571443-571509:1:exon

position:571509:1
position: 571509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:580499-580986:1:exon

clns1a
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: clns1a
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: methylosome subunit pICln isoform X3
translation: MVFLQCFPPPAEGVRLQQPEIAAVMDGLGLGTGTLYIAESRLSWFDGSGMGFSLEYPTISLHAVSRDVTVYPQEHLYVMVNAKLGDGSKEGNMEEKASDGEEAEEDEDASPITEVRFVPVDKTALDQMFTAMCDCQALHPDPDDSDSENDFEEDDEEGEEYDVEAHERGQGDIPSFCTYDEAFSRLNPEGHATLQRLEGMLAQSVSQQPFHMAGVRTDDSAADNEDTP
SIO_010081: clns1a
subclass of: SO_0000673
so part of: clns1a
location: join(555560..555678,559333..559469,560691..560807,562569..562694,570402..570578,580499..580509)
location: region:555560-580509:1
so has part: feature:555560-555678:1:exon
so has part: feature:559333-559469:1:exon
so has part: feature:560691-560807:1:exon
so has part: feature:562569-562694:1:exon
so has part: feature:570402-570578:1:exon
so has part: feature:580499-580509:1:exon

XP_055520801.1
type: Protein
SIO_000068: ncbiprotein

position:555560:1
position: 555560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:580509:1
position: 580509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:555560-555678:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:559333-559469:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:560691-560807:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:562569-562694:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:570402-570578:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:580499-580509:1:exon

clns1a
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: clns1a
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: methylosome subunit pICln isoform X2
translation: MVFLQCFPPPAEGVRLQQPEIAAVMDGLGLGTGTLYIAESRLSWFDGSGMGFSLEYPTISLHAVSRDVTVYPQEHLYVMVNAKLGDGSKEGNMEEKASDGEEAEEDEDASPITEVRFVPVDKTALDQMFTAMCDCQALHPDPDDSDSENDFEEDDEEGEEYDVEAHERGQGDIPSFCTYDEAFSRLNPEGHATLQRLEGMLAQSVSQQPFHMAGVRTDDSAADNEDGMEVDATHVEAGQFDDADVDH
SIO_010081: clns1a
subclass of: SO_0000673
so part of: clns1a
location: join(555560..555678,559333..559469,560691..560807,562569..562694,570402..570578,571443..571509,580499)
location: region:555560-580499:1
so has part: feature:555560-555678:1:exon
so has part: feature:559333-559469:1:exon
so has part: feature:560691-560807:1:exon
so has part: feature:562569-562694:1:exon
so has part: feature:570402-570578:1:exon
so has part: feature:571443-571509:1:exon
so has part: feature:580499-580499:1:exon

XP_055520800.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:555560-555678:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:559333-559469:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:560691-560807:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:562569-562694:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:570402-570578:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:571443-571509:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:580499-580499:1:exon

clns1a
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: clns1a
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: methylosome subunit pICln isoform X1
translation: MVFLQCFPPPAEGVRLQQPEIAAVMDGLGLGTGTLYIAESRLSWFDGSGMGFSLEYPTISLHAVSRDVTVYPQEHLYVMVNAKLGDGSKEGNMEEKASDGEEAEEDEDASPITEVRFVPVDKTALDQMFTAMCDCQALHPDPDDSDSENDFEEDDEEGEEYDVEAHERGQGDIPSFCTYDEAFSRLNPEGHATLQRLEGMLAQSVSQQPFHMAGVRTDDSAADNEDGMEVDATHVEAGQFDDADVDHW
SIO_010081: clns1a
subclass of: SO_0000673
so part of: clns1a
location: join(555560..555678,559333..559469,560691..560807,562569..562694,570402..570578,571443..571513)
location: region:555560-571513:1
so has part: feature:555560-555678:1:exon
so has part: feature:559333-559469:1:exon
so has part: feature:560691-560807:1:exon
so has part: feature:562569-562694:1:exon
so has part: feature:570402-570578:1:exon
so has part: feature:571443-571513:1:exon

XP_055520799.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:555560-555678:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:559333-559469:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:560691-560807:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:562569-562694:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:570402-570578:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:571443-571513:1:exon

aqp11
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: aqp11
note: aquaporin 11; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(591804..602259)
location: region:591804-602259:-1
so has part: feature:591804-602259:-1:exon
subclass of: SO_0000010

129714995
type: Gene
SIO_000068: ncbigene

position:591804:-1
position: 591804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:602259:-1
position: 602259
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:591804-602259:-1:exon

aqp11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: aqp11
product: aquaporin 11
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_055664802.1
SIO_010081: aqp11
subclass of: SO_0000673
so part of: aqp11
location: complement(join(591804..593778,596991..597107,600348..602259))
location: region:591804-602259:-1
so has part: feature:600348-602259:-1:exon
so has part: feature:596991-597107:-1:exon
so has part: feature:591804-593778:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:600348-602259:-1:exon

position:600348:-1
position: 600348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:596991-597107:-1:exon

position:596991:-1
position: 596991
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:597107:-1
position: 597107
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:591804-593778:-1:exon

position:593778:-1
position: 593778
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

aqp11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: aqp11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: aquaporin-11
translation: MQNILVSMGTVASTVTVCQVLRHIARAFLKPRCVISRGGGLSQTPLQLAIEFISTLQLCICTHELRLLGESGLLPGLGPSLVLVYLVTLVHLSTFGSASCNPVNTLERFLCGQYSGKLALSKVLLQVLAALAARRVTETIWTLHMSDLHWHHCKNHFKCTPAMKTSTLSNGMFVEFSCAFSLRAVIVRFQHLSANRRMFLVAGLITFLVFAAGGLTGAVFNPALAFSITFHCDGYTFLEYSFAYWLGPLLGALTAVMLFDKRMVCCANAAVQTPRSSMKTD
SIO_010081: aqp11
subclass of: SO_0000673
so part of: aqp11
location: complement(join(593684..593778,596991..597107,600348..600981))
location: region:593684-600981:-1
so has part: feature:600348-600981:-1:exon
so has part: feature:596991-597107:-1:exon
so has part: feature:593684-593778:-1:exon

XP_055520777.1
type: Protein
SIO_000068: ncbiprotein

position:593684:-1
position: 593684
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:600981:-1
position: 600981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:600348-600981:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:596991-597107:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:593684-593778:-1:exon

LOC129714998
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: LOC129714998
note: proline-rich protein HaeIII subfamily 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(602215..603189)
location: region:602215-603189:-1
so has part: feature:602215-603189:-1:exon
subclass of: SO_0000010

129714998
type: Gene
SIO_000068: ncbigene

position:602215:-1
position: 602215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:603189:-1
position: 603189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:602215-603189:-1:exon

LOC129714998
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: LOC129714998
product: proline-rich protein HaeIII subfamily 1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transcript id: XM_055664808.1
SIO_010081: LOC129714998
subclass of: SO_0000673
so part of: LOC129714998
location: complement(602215..603189)
location: region:602215-603189:-1
so has part: feature:602215-603189:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:602215-603189:-1:exon

LOC129714998
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: LOC129714998
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: proline-rich protein HaeIII subfamily 1-like
translation: MTTDPAPWQQAPPHGNRPRPMATGPAPWQQAPPHGNRPRPPWQQTPPPWQQTPPPWQQTPPHGNRPRPRQQTPPHGNRPRPTATDPPPHGNRPRPTATDPAPGNRPRPHGNRPRPTATDPAPGNRPRPTATDPAPRQQITATDPPPATDPAPRQQTPPPGNRPRPTATDPAPRQQTPPHGNRPRPMATDPAPWQQTPPPAPAPRQQPPPHGNRPRPTATDPAPRQQTPPHGNRPRPTATDPAPRQQTPPHGNRPRPTATDPAPTATDPAPRQQTPPHGNRPRPTATDPAPWQQTPTPPTATGHAPSLHVYCGSARAGRGRAVSV
SIO_010081: LOC129714998
subclass of: SO_0000673
so part of: LOC129714998
location: complement(602215..603189)
location: region:602215-603189:-1
so has part: feature:602215-603189:-1:exon

XP_055520783.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:602215-603189:-1:exon

pak1
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: pak1
note: p21 protein (Cdc42/Rac)-activated kinase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 611415..766542
location: region:611415-766542:1
so has part: feature:611415-766542:1:exon
subclass of: SO_0000010

129714999
type: Gene
SIO_000068: ncbigene

position:611415:1
position: 611415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:766542:1
position: 766542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:611415-766542:1:exon

pak1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: pak1
product: p21 protein (Cdc42/Rac)-activated kinase 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 35 Proteins
transcript id: XM_055664811.1
SIO_010081: pak1
subclass of: SO_0000673
so part of: pak1
location: join(611415..611673,704004..704212,731126..731226,732446..732593,733819..733856,736562..736675,740182..740359,743712..743775,745312..745360,745481..745593,748220..748337,758202..758301,761804..762000,764539..764676,765598..766542)
location: region:611415-766542:1
so has part: feature:611415-611673:1:exon
so has part: feature:704004-704212:1:exon
so has part: feature:731126-731226:1:exon
so has part: feature:732446-732593:1:exon
so has part: feature:733819-733856:1:exon
so has part: feature:736562-736675:1:exon
so has part: feature:740182-740359:1:exon
so has part: feature:743712-743775:1:exon
so has part: feature:745312-745360:1:exon
so has part: feature:745481-745593:1:exon
so has part: feature:748220-748337:1:exon
so has part: feature:758202-758301:1:exon
so has part: feature:761804-762000:1:exon
so has part: feature:764539-764676:1:exon
so has part: feature:765598-766542:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:611415-611673:1:exon

position:611673:1
position: 611673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:704004-704212:1:exon

position:704004:1
position: 704004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:704212:1
position: 704212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:731126-731226:1:exon

position:731126:1
position: 731126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:731226:1
position: 731226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:732446-732593:1:exon

position:732446:1
position: 732446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:732593:1
position: 732593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:733819-733856:1:exon

position:733819:1
position: 733819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:733856:1
position: 733856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:736562-736675:1:exon

position:736562:1
position: 736562
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:736675:1
position: 736675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:740182-740359:1:exon

position:740182:1
position: 740182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:740359:1
position: 740359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:743712-743775:1:exon

position:743712:1
position: 743712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:743775:1
position: 743775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:745312-745360:1:exon

position:745312:1
position: 745312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:745360:1
position: 745360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:745481-745593:1:exon

position:745481:1
position: 745481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:745593:1
position: 745593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:748220-748337:1:exon

position:748220:1
position: 748220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:748337:1
position: 748337
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:758202-758301:1:exon

position:758202:1
position: 758202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:758301:1
position: 758301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:761804-762000:1:exon

position:761804:1
position: 761804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:762000:1
position: 762000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:764539-764676:1:exon

position:764539:1
position: 764539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:764676:1
position: 764676
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:765598-766542:1:exon

position:765598:1
position: 765598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

pak1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: pak1
product: p21 protein (Cdc42/Rac)-activated kinase 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 35 Proteins
transcript id: XM_055664810.1
SIO_010081: pak1
subclass of: SO_0000673
so part of: pak1
location: join(611415..611669,704004..704212,731126..731226,732446..732593,733819..733856,736562..736675,740182..740359,743712..743775,745312..745360,745481..745593,748220..748337,758202..758301,761804..762000,764539..764676,765598..766542)
location: region:611415-766542:1
so has part: feature:611415-611669:1:exon
so has part: feature:704004-704212:1:exon
so has part: feature:731126-731226:1:exon
so has part: feature:732446-732593:1:exon
so has part: feature:733819-733856:1:exon
so has part: feature:736562-736675:1:exon
so has part: feature:740182-740359:1:exon
so has part: feature:743712-743775:1:exon
so has part: feature:745312-745360:1:exon
so has part: feature:745481-745593:1:exon
so has part: feature:748220-748337:1:exon
so has part: feature:758202-758301:1:exon
so has part: feature:761804-762000:1:exon
so has part: feature:764539-764676:1:exon
so has part: feature:765598-766542:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:611415-611669:1:exon

position:611669:1
position: 611669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:704004-704212:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:731126-731226:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:732446-732593:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:733819-733856:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:736562-736675:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:740182-740359:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:743712-743775:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:745312-745360:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:745481-745593:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:748220-748337:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:758202-758301:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:761804-762000:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:764539-764676:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:765598-766542:1:exon

pak1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: pak1
product: p21 protein (Cdc42/Rac)-activated kinase 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 36 Proteins
transcript id: XM_055664809.1
SIO_010081: pak1
subclass of: SO_0000673
so part of: pak1
location: join(673831..674695,704004..704212,731126..731226,732446..732593,733819..733856,736562..736675,740182..740359,743712..743775,745312..745360,745481..745593,748220..748337,758202..758301,761804..762000,764539..764676,765598..766542)
location: region:673831-766542:1
so has part: feature:673831-674695:1:exon
so has part: feature:704004-704212:1:exon
so has part: feature:731126-731226:1:exon
so has part: feature:732446-732593:1:exon
so has part: feature:733819-733856:1:exon
so has part: feature:736562-736675:1:exon
so has part: feature:740182-740359:1:exon
so has part: feature:743712-743775:1:exon
so has part: feature:745312-745360:1:exon
so has part: feature:745481-745593:1:exon
so has part: feature:748220-748337:1:exon
so has part: feature:758202-758301:1:exon
so has part: feature:761804-762000:1:exon
so has part: feature:764539-764676:1:exon
so has part: feature:765598-766542:1:exon

position:673831:1
position: 673831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:673831-674695:1:exon

position:674695:1
position: 674695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:704004-704212:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:731126-731226:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:732446-732593:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:733819-733856:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:736562-736675:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:740182-740359:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:743712-743775:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:745312-745360:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:745481-745593:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:748220-748337:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:758202-758301:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:761804-762000:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:764539-764676:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:765598-766542:1:exon

pak1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: pak1
product: p21 protein (Cdc42/Rac)-activated kinase 1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
transcript id: XM_055664812.1
SIO_010081: pak1
subclass of: SO_0000673
so part of: pak1
location: join(673831..674695,704004..704212,731126..731226,732446..732593,733819..733856,736562..736675,740182..740359,743712..743775,745312..745360,745481..745593,748220..748337,758202..758301,761804..762000,764539..764685)
location: region:673831-764685:1
so has part: feature:673831-674695:1:exon
so has part: feature:704004-704212:1:exon
so has part: feature:731126-731226:1:exon
so has part: feature:732446-732593:1:exon
so has part: feature:733819-733856:1:exon
so has part: feature:736562-736675:1:exon
so has part: feature:740182-740359:1:exon
so has part: feature:743712-743775:1:exon
so has part: feature:745312-745360:1:exon
so has part: feature:745481-745593:1:exon
so has part: feature:748220-748337:1:exon
so has part: feature:758202-758301:1:exon
so has part: feature:761804-762000:1:exon
so has part: feature:764539-764685:1:exon

position:764685:1
position: 764685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:673831-674695:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:704004-704212:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:731126-731226:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:732446-732593:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:733819-733856:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:736562-736675:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:740182-740359:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:743712-743775:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:745312-745360:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:745481-745593:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:748220-748337:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:758202-758301:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:761804-762000:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:764539-764685:1:exon

pak1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: pak1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase PAK 1 isoform X1
translation: MSDNGEVEDKPPAPPMRNTSTMIGVGSKDSGNLNHGSKPLPLAPEEKKKKDRLRFFPGAGDKTNRKKERERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYESKETSNSQKYMSFTDKTADGYVTTNALSTKNVSESPAVPPVSEDDDEDEGIPPPVIAPRPEHTKSMYTRSVIDPIPLPPTKDAATSPISSPSDNSTTPSTTLTRNAEKQRKKTKMTDEEILEKLRSIVTVGDPKKKYSRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSSIFRDFLNRCLEMDVEKRGSAKELLQHPFLKVAKPLSSLTPLILAAKDAAKNNR
SIO_010081: pak1
subclass of: SO_0000673
so part of: pak1
location: join(704026..704212,731126..731226,732446..732593,733819..733856,736562..736675,740182..740359,743712..743775,745312..745360,745481..745593,748220..748337,758202..758301,761804..762000,764539..764676,765598..765684)
location: region:704026-765684:1
so has part: feature:704026-704212:1:exon
so has part: feature:731126-731226:1:exon
so has part: feature:732446-732593:1:exon
so has part: feature:733819-733856:1:exon
so has part: feature:736562-736675:1:exon
so has part: feature:740182-740359:1:exon
so has part: feature:743712-743775:1:exon
so has part: feature:745312-745360:1:exon
so has part: feature:745481-745593:1:exon
so has part: feature:748220-748337:1:exon
so has part: feature:758202-758301:1:exon
so has part: feature:761804-762000:1:exon
so has part: feature:764539-764676:1:exon
so has part: feature:765598-765684:1:exon

XP_055520784.1
type: Protein
SIO_000068: ncbiprotein

position:704026:1
position: 704026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:765684:1
position: 765684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:704026-704212:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:731126-731226:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:732446-732593:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:733819-733856:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:736562-736675:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:740182-740359:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:743712-743775:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:745312-745360:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:745481-745593:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:748220-748337:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:758202-758301:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:761804-762000:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:764539-764676:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:765598-765684:1:exon

pak1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: pak1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase PAK 1 isoform X1
translation: MSDNGEVEDKPPAPPMRNTSTMIGVGSKDSGNLNHGSKPLPLAPEEKKKKDRLRFFPGAGDKTNRKKERERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYESKETSNSQKYMSFTDKTADGYVTTNALSTKNVSESPAVPPVSEDDDEDEGIPPPVIAPRPEHTKSMYTRSVIDPIPLPPTKDAATSPISSPSDNSTTPSTTLTRNAEKQRKKTKMTDEEILEKLRSIVTVGDPKKKYSRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSSIFRDFLNRCLEMDVEKRGSAKELLQHPFLKVAKPLSSLTPLILAAKDAAKNNR
SIO_010081: pak1
subclass of: SO_0000673
so part of: pak1
location: join(704026..704212,731126..731226,732446..732593,733819..733856,736562..736675,740182..740359,743712..743775,745312..745360,745481..745593,748220..748337,758202..758301,761804..762000,764539..764676,765598..765684)
location: region:704026-765684:1
so has part: feature:704026-704212:1:exon
so has part: feature:731126-731226:1:exon
so has part: feature:732446-732593:1:exon
so has part: feature:733819-733856:1:exon
so has part: feature:736562-736675:1:exon
so has part: feature:740182-740359:1:exon
so has part: feature:743712-743775:1:exon
so has part: feature:745312-745360:1:exon
so has part: feature:745481-745593:1:exon
so has part: feature:748220-748337:1:exon
so has part: feature:758202-758301:1:exon
so has part: feature:761804-762000:1:exon
so has part: feature:764539-764676:1:exon
so has part: feature:765598-765684:1:exon

XP_055520785.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:704026-704212:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:731126-731226:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:732446-732593:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:733819-733856:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:736562-736675:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:740182-740359:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:743712-743775:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:745312-745360:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:745481-745593:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:748220-748337:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:758202-758301:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:761804-762000:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:764539-764676:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:765598-765684:1:exon

pak1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: pak1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase PAK 1 isoform X1
translation: MSDNGEVEDKPPAPPMRNTSTMIGVGSKDSGNLNHGSKPLPLAPEEKKKKDRLRFFPGAGDKTNRKKERERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYESKETSNSQKYMSFTDKTADGYVTTNALSTKNVSESPAVPPVSEDDDEDEGIPPPVIAPRPEHTKSMYTRSVIDPIPLPPTKDAATSPISSPSDNSTTPSTTLTRNAEKQRKKTKMTDEEILEKLRSIVTVGDPKKKYSRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSSIFRDFLNRCLEMDVEKRGSAKELLQHPFLKVAKPLSSLTPLILAAKDAAKNNR
SIO_010081: pak1
subclass of: SO_0000673
so part of: pak1
location: join(704026..704212,731126..731226,732446..732593,733819..733856,736562..736675,740182..740359,743712..743775,745312..745360,745481..745593,748220..748337,758202..758301,761804..762000,764539..764676,765598..765684)
location: region:704026-765684:1
so has part: feature:704026-704212:1:exon
so has part: feature:731126-731226:1:exon
so has part: feature:732446-732593:1:exon
so has part: feature:733819-733856:1:exon
so has part: feature:736562-736675:1:exon
so has part: feature:740182-740359:1:exon
so has part: feature:743712-743775:1:exon
so has part: feature:745312-745360:1:exon
so has part: feature:745481-745593:1:exon
so has part: feature:748220-748337:1:exon
so has part: feature:758202-758301:1:exon
so has part: feature:761804-762000:1:exon
so has part: feature:764539-764676:1:exon
so has part: feature:765598-765684:1:exon

XP_055520786.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:704026-704212:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:731126-731226:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:732446-732593:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:733819-733856:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:736562-736675:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:740182-740359:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:743712-743775:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:745312-745360:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:745481-745593:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:748220-748337:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:758202-758301:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:761804-762000:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:764539-764676:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:765598-765684:1:exon

pak1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: pak1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase PAK 1 isoform X2
translation: MSDNGEVEDKPPAPPMRNTSTMIGVGSKDSGNLNHGSKPLPLAPEEKKKKDRLRFFPGAGDKTNRKKERERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYESKETSNSQKYMSFTDKTADGYVTTNALSTKNVSESPAVPPVSEDDDEDEGIPPPVIAPRPEHTKSMYTRSVIDPIPLPPTKDAATSPISSPSDNSTTPSTTLTRNAEKQRKKTKMTDEEILEKLRSIVTVGDPKKKYSRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSSIFRDFLNRCLEMDVEKRGSAKELLQVR
SIO_010081: pak1
subclass of: SO_0000673
so part of: pak1
location: join(704026..704212,731126..731226,732446..732593,733819..733856,736562..736675,740182..740359,743712..743775,745312..745360,745481..745593,748220..748337,758202..758301,761804..762000,764539..764685)
location: region:704026-764685:1
so has part: feature:704026-704212:1:exon
so has part: feature:731126-731226:1:exon
so has part: feature:732446-732593:1:exon
so has part: feature:733819-733856:1:exon
so has part: feature:736562-736675:1:exon
so has part: feature:740182-740359:1:exon
so has part: feature:743712-743775:1:exon
so has part: feature:745312-745360:1:exon
so has part: feature:745481-745593:1:exon
so has part: feature:748220-748337:1:exon
so has part: feature:758202-758301:1:exon
so has part: feature:761804-762000:1:exon
so has part: feature:764539-764685:1:exon

XP_055520787.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:704026-704212:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:731126-731226:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:732446-732593:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:733819-733856:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:736562-736675:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:740182-740359:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:743712-743775:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:745312-745360:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:745481-745593:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:748220-748337:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:758202-758301:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:761804-762000:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:764539-764685:1:exon

pak1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: pak1
product: p21 protein (Cdc42/Rac)-activated kinase 1, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
transcript id: XM_055664813.1
SIO_010081: pak1
subclass of: SO_0000673
so part of: pak1
location: join(730234..730573,731126..731226,732446..732593,733819..733856,736562..736675,740182..740359,743712..743775,745312..745360,745481..745593,748220..748337,758202..758301,761804..762000,764539..764676,765598..766542)
location: region:730234-766542:1
so has part: feature:730234-730573:1:exon
so has part: feature:731126-731226:1:exon
so has part: feature:732446-732593:1:exon
so has part: feature:733819-733856:1:exon
so has part: feature:736562-736675:1:exon
so has part: feature:740182-740359:1:exon
so has part: feature:743712-743775:1:exon
so has part: feature:745312-745360:1:exon
so has part: feature:745481-745593:1:exon
so has part: feature:748220-748337:1:exon
so has part: feature:758202-758301:1:exon
so has part: feature:761804-762000:1:exon
so has part: feature:764539-764676:1:exon
so has part: feature:765598-766542:1:exon

position:730234:1
position: 730234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:730234-730573:1:exon

position:730573:1
position: 730573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:731126-731226:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:732446-732593:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:733819-733856:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:736562-736675:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:740182-740359:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:743712-743775:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:745312-745360:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:745481-745593:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:748220-748337:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:758202-758301:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:761804-762000:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:764539-764676:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:765598-766542:1:exon

pak1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: pak1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase PAK 1 isoform X3
translation: MALQTNRKKERERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYESKETSNSQKYMSFTDKTADGYVTTNALSTKNVSESPAVPPVSEDDDEDEGIPPPVIAPRPEHTKSMYTRSVIDPIPLPPTKDAATSPISSPSDNSTTPSTTLTRNAEKQRKKTKMTDEEILEKLRSIVTVGDPKKKYSRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSSIFRDFLNRCLEMDVEKRGSAKELLQHPFLKVAKPLSSLTPLILAAKDAAKNNR
SIO_010081: pak1
subclass of: SO_0000673
so part of: pak1
location: join(730561..730573,731126..731226,732446..732593,733819..733856,736562..736675,740182..740359,743712..743775,745312..745360,745481..745593,748220..748337,758202..758301,761804..762000,764539..764676,765598..765684)
location: region:730561-765684:1
so has part: feature:730561-730573:1:exon
so has part: feature:731126-731226:1:exon
so has part: feature:732446-732593:1:exon
so has part: feature:733819-733856:1:exon
so has part: feature:736562-736675:1:exon
so has part: feature:740182-740359:1:exon
so has part: feature:743712-743775:1:exon
so has part: feature:745312-745360:1:exon
so has part: feature:745481-745593:1:exon
so has part: feature:748220-748337:1:exon
so has part: feature:758202-758301:1:exon
so has part: feature:761804-762000:1:exon
so has part: feature:764539-764676:1:exon
so has part: feature:765598-765684:1:exon

XP_055520788.1
type: Protein
SIO_000068: ncbiprotein

position:730561:1
position: 730561
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:730561-730573:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:731126-731226:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:732446-732593:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:733819-733856:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:736562-736675:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:740182-740359:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:743712-743775:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:745312-745360:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:745481-745593:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:748220-748337:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:758202-758301:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:761804-762000:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:764539-764676:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:765598-765684:1:exon

myo7aa
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: myo7aa
note: myosin VIIAa; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(839371..994602)
location: region:839371-994602:-1
so has part: feature:839371-994602:-1:exon
subclass of: SO_0000010

129714993
type: Gene
SIO_000068: ncbigene

position:839371:-1
position: 839371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:994602:-1
position: 994602
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:839371-994602:-1:exon

myo7aa
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: myo7aa
product: myosin VIIAa
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
transcript id: XM_055664799.1
SIO_010081: myo7aa
subclass of: SO_0000673
so part of: myo7aa
location: complement(join(839371..839733,840459..840662,844381..844590,845902..846009,852049..852267,852867..852951,854233..854327,856863..856955,861525..861683,864051..864239,865232..865338,866405..866540,872519..872729,876728..876870,877767..877886,880025..880101,883931..884084,890118..890231,893868..894010,895018..895139,897992..898176,901258..901275,904682..904834,907279..907392,951299..951356,994323..994602))
location: region:839371-994602:-1
so has part: feature:994323-994602:-1:exon
so has part: feature:951299-951356:-1:exon
so has part: feature:907279-907392:-1:exon
so has part: feature:904682-904834:-1:exon
so has part: feature:901258-901275:-1:exon
so has part: feature:897992-898176:-1:exon
so has part: feature:895018-895139:-1:exon
so has part: feature:893868-894010:-1:exon
so has part: feature:890118-890231:-1:exon
so has part: feature:883931-884084:-1:exon
so has part: feature:880025-880101:-1:exon
so has part: feature:877767-877886:-1:exon
so has part: feature:876728-876870:-1:exon
so has part: feature:872519-872729:-1:exon
so has part: feature:866405-866540:-1:exon
so has part: feature:865232-865338:-1:exon
so has part: feature:864051-864239:-1:exon
so has part: feature:861525-861683:-1:exon
so has part: feature:856863-856955:-1:exon
so has part: feature:854233-854327:-1:exon
so has part: feature:852867-852951:-1:exon
so has part: feature:852049-852267:-1:exon
so has part: feature:845902-846009:-1:exon
so has part: feature:844381-844590:-1:exon
so has part: feature:840459-840662:-1:exon
so has part: feature:839371-839733:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:994323-994602:-1:exon

position:994323:-1
position: 994323
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:951299-951356:-1:exon

position:951299:-1
position: 951299
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:951356:-1
position: 951356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:907279-907392:-1:exon

position:907279:-1
position: 907279
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:907392:-1
position: 907392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:904682-904834:-1:exon

position:904682:-1
position: 904682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:904834:-1
position: 904834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:901258-901275:-1:exon

position:901258:-1
position: 901258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:901275:-1
position: 901275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:897992-898176:-1:exon

position:897992:-1
position: 897992
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:898176:-1
position: 898176
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:895018-895139:-1:exon

position:895018:-1
position: 895018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:895139:-1
position: 895139
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:893868-894010:-1:exon

position:893868:-1
position: 893868
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:894010:-1
position: 894010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:890118-890231:-1:exon

position:890118:-1
position: 890118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:890231:-1
position: 890231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:883931-884084:-1:exon

position:883931:-1
position: 883931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:884084:-1
position: 884084
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:880025-880101:-1:exon

position:880025:-1
position: 880025
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:880101:-1
position: 880101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:877767-877886:-1:exon

position:877767:-1
position: 877767
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:877886:-1
position: 877886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:876728-876870:-1:exon

position:876728:-1
position: 876728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:876870:-1
position: 876870
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:872519-872729:-1:exon

position:872519:-1
position: 872519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:872729:-1
position: 872729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:866405-866540:-1:exon

position:866405:-1
position: 866405
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:866540:-1
position: 866540
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:865232-865338:-1:exon

position:865232:-1
position: 865232
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:865338:-1
position: 865338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:864051-864239:-1:exon

position:864051:-1
position: 864051
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:864239:-1
position: 864239
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:861525-861683:-1:exon

position:861525:-1
position: 861525
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:861683:-1
position: 861683
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:856863-856955:-1:exon

position:856863:-1
position: 856863
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:856955:-1
position: 856955
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:854233-854327:-1:exon

position:854233:-1
position: 854233
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:854327:-1
position: 854327
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:852867-852951:-1:exon

position:852867:-1
position: 852867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:852951:-1
position: 852951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:852049-852267:-1:exon

position:852049:-1
position: 852049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:852267:-1
position: 852267
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:845902-846009:-1:exon

position:845902:-1
position: 845902
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:846009:-1
position: 846009
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:844381-844590:-1:exon

position:844381:-1
position: 844381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:844590:-1
position: 844590
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:840459-840662:-1:exon

position:840459:-1
position: 840459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:840662:-1
position: 840662
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:839371-839733:-1:exon

position:839733:-1
position: 839733
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

myo7aa
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: myo7aa
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: myosin VIIAa
translation: MVILQQGDYVWLDLKTGREFEVPLGAVVKLCDSGQIQVVDDEGNEHWISPQNATNIKPMHPTSVHGVEDMIRLGDLNEAGILRNLLIRYRDRLIYTNCGSRTYTGSILVAVNPYQLLPIYTAEQIRYYTNRKIGEMPPHIFAIADNCYFNMQRNNRDQCCIISGESGAGKTESTKLILQFLAAISGQHSWIEQQVLEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNKRGAIEGAKIEQYLLEKSRVCRQANGERNYHIFYCMLMGMSPEQKKKLGLGKPTDYTYLTMGKCTFCDGRDDSKEYANIRSAMKVLMFTDTENGEISKLMAAILHMGNLSYEPRMYDNLDSCEVVYSGQLLTAATLLEVDCLDLQNCLTSRTIITRGETVSTPLNMVQALDVRDAFVKGIYGRLFVWIVEKINAAIYKPPSREPKTVRRSIGLLDIFGFENFHANSFEQLCINFANENLQQFFVRHVFKLEQEEYNLENINWQHIEFTDNQDALDMIALKPMNIISLIDEESKFPKGTDTTMLNKLNSQHKLNAYYIPPKNNYETQFGISHFAGIVYYETKGFLEKNRDTLHGDIIQLVHSSKNKFIKQIFQADVAMFPVALVTPLSAPFSFLQGAETRKRSPTLSSQFKRSLELLMRTLGVCQPFFVRCIKPNEYKKSMLFDRELCVRQLRYSGMMETIRIRRAGYPIRYTFVEFVDRYRVLMPGVKPAYKQGDLRGTCQRIAEAFLGRVDDWQIGKTKIFLKDHHDMMLEVERDKAITDKVILIQKVVRGFKDRSNFVKMRKSVMLIQRYWRGYRCRKRFSAMRLGFCRLQALHRSRKLFTQYHFARKRIILFQARCRGYLVRRAFRHRLWAVITIQASVRAMIARRLYKRLKGEYHRRLEAEKMRLAEEMRLSKEMSSKKAKEQAERTHQERLAQLAREDAAREIGERKEARRKKEMLQQLEKARNEPVNDSEMVDKMFGFLGVPSVVPGHEGQPPAGFEDLERSPRPMDEEDLDASLPLPEEEEEDLSEYKFAKFAATYFQGTTTHTYIRRPLKVPLLFHDDEGDQLASLAVWITILRFMGDLPEPKYHTAISDGSEKIPVMTKIYETLGKKTYKRELQALQGDAEVRPRWPIKIGKNFPPEPSRG
SIO_010081: myo7aa
subclass of: SO_0000673
so part of: myo7aa
location: complement(join(839494..839733,840459..840662,844381..844590,845902..846009,852049..852267,852867..852951,854233..854327,856863..856955,861525..861683,864051..864239,865232..865338,866405..866540,872519..872729,876728..876870,877767..877886,880025..880101,883931..884084,890118..890231,893868..894010,895018..895139,897992..898176,901258..901275,904682..904834,907279..907392,951299..951316))
location: region:839494-951316:-1
so has part: feature:951299-951316:-1:exon
so has part: feature:907279-907392:-1:exon
so has part: feature:904682-904834:-1:exon
so has part: feature:901258-901275:-1:exon
so has part: feature:897992-898176:-1:exon
so has part: feature:895018-895139:-1:exon
so has part: feature:893868-894010:-1:exon
so has part: feature:890118-890231:-1:exon
so has part: feature:883931-884084:-1:exon
so has part: feature:880025-880101:-1:exon
so has part: feature:877767-877886:-1:exon
so has part: feature:876728-876870:-1:exon
so has part: feature:872519-872729:-1:exon
so has part: feature:866405-866540:-1:exon
so has part: feature:865232-865338:-1:exon
so has part: feature:864051-864239:-1:exon
so has part: feature:861525-861683:-1:exon
so has part: feature:856863-856955:-1:exon
so has part: feature:854233-854327:-1:exon
so has part: feature:852867-852951:-1:exon
so has part: feature:852049-852267:-1:exon
so has part: feature:845902-846009:-1:exon
so has part: feature:844381-844590:-1:exon
so has part: feature:840459-840662:-1:exon
so has part: feature:839494-839733:-1:exon

XP_055520774.1
type: Protein
SIO_000068: ncbiprotein

position:839494:-1
position: 839494
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:951316:-1
position: 951316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:951299-951316:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:907279-907392:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:904682-904834:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:901258-901275:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:897992-898176:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:895018-895139:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:893868-894010:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:890118-890231:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:883931-884084:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:880025-880101:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:877767-877886:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:876728-876870:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:872519-872729:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:866405-866540:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:865232-865338:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:864051-864239:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:861525-861683:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:856863-856955:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:854233-854327:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:852867-852951:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:852049-852267:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:845902-846009:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:844381-844590:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:840459-840662:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:839494-839733:-1:exon

capn5a
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: capn5a
note: calpain 5a; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1005599..1081627)
location: region:1005599-1081627:-1
so has part: feature:1005599-1081627:-1:exon
subclass of: SO_0000010

129714992
type: Gene
SIO_000068: ncbigene

position:1005599:-1
position: 1005599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1081627:-1
position: 1081627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1005599-1081627:-1:exon

capn5a
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: capn5a
product: calpain 5a
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
transcript id: XM_055664798.1
SIO_010081: capn5a
subclass of: SO_0000673
so part of: capn5a
location: complement(join(1005599..1005997,1006592..1006728,1007913..1008034,1012162..1012358,1013713..1013835,1016207..1016403,1017096..1017173,1018218..1018411,1022138..1022330,1039782..1039990,1041224..1041355,1059694..1059865,1081494..1081627))
location: region:1005599-1081627:-1
so has part: feature:1081494-1081627:-1:exon
so has part: feature:1059694-1059865:-1:exon
so has part: feature:1041224-1041355:-1:exon
so has part: feature:1039782-1039990:-1:exon
so has part: feature:1022138-1022330:-1:exon
so has part: feature:1018218-1018411:-1:exon
so has part: feature:1017096-1017173:-1:exon
so has part: feature:1016207-1016403:-1:exon
so has part: feature:1013713-1013835:-1:exon
so has part: feature:1012162-1012358:-1:exon
so has part: feature:1007913-1008034:-1:exon
so has part: feature:1006592-1006728:-1:exon
so has part: feature:1005599-1005997:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1081494-1081627:-1:exon

position:1081494:-1
position: 1081494
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1059694-1059865:-1:exon

position:1059694:-1
position: 1059694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1059865:-1
position: 1059865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1041224-1041355:-1:exon

position:1041224:-1
position: 1041224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1041355:-1
position: 1041355
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1039782-1039990:-1:exon

position:1039782:-1
position: 1039782
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1039990:-1
position: 1039990
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1022138-1022330:-1:exon

position:1022138:-1
position: 1022138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1022330:-1
position: 1022330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1018218-1018411:-1:exon

position:1018218:-1
position: 1018218
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1018411:-1
position: 1018411
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1017096-1017173:-1:exon

position:1017096:-1
position: 1017096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1017173:-1
position: 1017173
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1016207-1016403:-1:exon

position:1016207:-1
position: 1016207
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1016403:-1
position: 1016403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1013713-1013835:-1:exon

position:1013713:-1
position: 1013713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1013835:-1
position: 1013835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1012162-1012358:-1:exon

position:1012162:-1
position: 1012162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1012358:-1
position: 1012358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1007913-1008034:-1:exon

position:1007913:-1
position: 1007913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1008034:-1
position: 1008034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1006592-1006728:-1:exon

position:1006592:-1
position: 1006592
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1006728:-1
position: 1006728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1005599-1005997:-1:exon

position:1005997:-1
position: 1005997
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

capn5a
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: capn5a
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: calpain-5a
translation: MFDSVKPYANQEFYALKKECQKRNQLFEDPQFLANEESLFCTTALLSNVHWKRPPEICNGPHLFVDGMSAHDLNQGQLGNCWFVAACSCLASRDNLWQTVIPNWKEQEWAVDKPNNYAGIFHFRFWRFGEWADVVIDDRLPTVNGQLVYCHSNSKNEFWSALVEKAYAKLAGCYESLDGGNTADALVDFTGGVSEPVDLTIGNLATVEEQRLQLFDKLFKVHSREGLISCSIRVASAAEMEIRLNSGLVKGHAYAVTDVRKVRLGHGLLAYFKADKLFMIRMRNPWGQKEWTGPWSDSSEEWKQVSKGERESMGMTVRDDGEFWMSFDDFCKNFTDLVVCRVMNTSFFSFHKTWEEARVKGAWVRHEDPLQNRGGGCINNRDTFLQNPQYVFDVKKDMDEVLMCLQQKDVRYSRQQGRGEKLSMGFEVYRVELNRDYRMHTIQEKVASSVYINSKTIFLRQELPQGRYAIIPTTFEPGITGEFLLRIFTDVPAGFRELTLNEPPRTCWSGLCGHPQVVTQVHVVAASGLAAQDGTTGADPYVIIRCGRHKVKSHIHKNTLNPEFNVKAIFYRDDAKSAIHIEIWNSNVFKDQFLGQVTLLADPGDLQPHHTLHLRDKGNRQDNDLPGTININVSSSKELASI
SIO_010081: capn5a
subclass of: SO_0000673
so part of: capn5a
location: complement(join(1005815..1005997,1006592..1006728,1007913..1008034,1012162..1012358,1013713..1013835,1016207..1016403,1017096..1017173,1018218..1018411,1022138..1022330,1039782..1039990,1041224..1041355,1059694..1059858))
location: region:1005815-1059858:-1
so has part: feature:1059694-1059858:-1:exon
so has part: feature:1041224-1041355:-1:exon
so has part: feature:1039782-1039990:-1:exon
so has part: feature:1022138-1022330:-1:exon
so has part: feature:1018218-1018411:-1:exon
so has part: feature:1017096-1017173:-1:exon
so has part: feature:1016207-1016403:-1:exon
so has part: feature:1013713-1013835:-1:exon
so has part: feature:1012162-1012358:-1:exon
so has part: feature:1007913-1008034:-1:exon
so has part: feature:1006592-1006728:-1:exon
so has part: feature:1005815-1005997:-1:exon

XP_055520773.1
type: Protein
SIO_000068: ncbiprotein

position:1005815:-1
position: 1005815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1059858:-1
position: 1059858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1059694-1059858:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1041224-1041355:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1039782-1039990:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1022138-1022330:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1018218-1018411:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1017096-1017173:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1016207-1016403:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1013713-1013835:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1012162-1012358:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1007913-1008034:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1006592-1006728:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1005815-1005997:-1:exon

acer3
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: acer3
note: alkaline ceramidase 3; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1112500..1306093)
location: region:1112500-1306093:-1
so has part: feature:1112500-1306093:-1:exon
subclass of: SO_0000010

129715006
type: Gene
SIO_000068: ncbigene

position:1112500:-1
position: 1112500
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1306093:-1
position: 1306093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1112500-1306093:-1:exon

acer3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: acer3
product: alkaline ceramidase 3, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_055664822.1
SIO_010081: acer3
subclass of: SO_0000673
so part of: acer3
location: complement(join(1112500..1116693,1119392..1119437,1134681..1134788,1141728..1141829,1145939..1145997,1192259..1192294,1195488..1195569,1214063..1214115,1219541..1219593,1261706..1261816,1305931..1306093))
location: region:1112500-1306093:-1
so has part: feature:1305931-1306093:-1:exon
so has part: feature:1261706-1261816:-1:exon
so has part: feature:1219541-1219593:-1:exon
so has part: feature:1214063-1214115:-1:exon
so has part: feature:1195488-1195569:-1:exon
so has part: feature:1192259-1192294:-1:exon
so has part: feature:1145939-1145997:-1:exon
so has part: feature:1141728-1141829:-1:exon
so has part: feature:1134681-1134788:-1:exon
so has part: feature:1119392-1119437:-1:exon
so has part: feature:1112500-1116693:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1305931-1306093:-1:exon

position:1305931:-1
position: 1305931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1261706-1261816:-1:exon

position:1261706:-1
position: 1261706
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1261816:-1
position: 1261816
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1219541-1219593:-1:exon

position:1219541:-1
position: 1219541
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1219593:-1
position: 1219593
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1214063-1214115:-1:exon

position:1214063:-1
position: 1214063
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1214115:-1
position: 1214115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1195488-1195569:-1:exon

position:1195488:-1
position: 1195488
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1195569:-1
position: 1195569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1192259-1192294:-1:exon

position:1192259:-1
position: 1192259
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1192294:-1
position: 1192294
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1145939-1145997:-1:exon

position:1145939:-1
position: 1145939
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1145997:-1
position: 1145997
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1141728-1141829:-1:exon

position:1141728:-1
position: 1141728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1141829:-1
position: 1141829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1134681-1134788:-1:exon

position:1134681:-1
position: 1134681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1134788:-1
position: 1134788
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1119392-1119437:-1:exon

position:1119392:-1
position: 1119392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1119437:-1
position: 1119437
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1112500-1116693:-1:exon

position:1116693:-1
position: 1116693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

acer3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: acer3
product: alkaline ceramidase 3, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_055664823.1
SIO_010081: acer3
subclass of: SO_0000673
so part of: acer3
location: complement(join(1112500..1116693,1119392..1119437,1134681..1134788,1141728..1141829,1145939..1145997,1192259..1192294,1195488..1195569,1214063..1214115,1219541..1219593,1261706..1261816,1265082..1265258))
location: region:1112500-1265258:-1
so has part: feature:1265082-1265258:-1:exon
so has part: feature:1261706-1261816:-1:exon
so has part: feature:1219541-1219593:-1:exon
so has part: feature:1214063-1214115:-1:exon
so has part: feature:1195488-1195569:-1:exon
so has part: feature:1192259-1192294:-1:exon
so has part: feature:1145939-1145997:-1:exon
so has part: feature:1141728-1141829:-1:exon
so has part: feature:1134681-1134788:-1:exon
so has part: feature:1119392-1119437:-1:exon
so has part: feature:1112500-1116693:-1:exon

position:1265258:-1
position: 1265258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1265082-1265258:-1:exon

position:1265082:-1
position: 1265082
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1261706-1261816:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1219541-1219593:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1214063-1214115:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1195488-1195569:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1192259-1192294:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1145939-1145997:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1141728-1141829:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1134681-1134788:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1119392-1119437:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1112500-1116693:-1:exon

acer3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: acer3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: alkaline ceramidase 3 isoform X1
translation: MAPVYDRPGYWGEPTSTLDWCEENYAVSFYVAEFWNTVSNLIMILPPIYGAIQTVKDGLETRYLAAFLGLAAVGIGSWCFHMTLKYEMQLLDELPMIYSCCIFVYCLYECFKHKNTRNYLLAFILALFSGLVTIVYLQWKEPVFHQVMYGFLVGCLVLRSIYIVTWVYPWLRPLAYTSLGVFLMGFILWNVDNILCDNLRTIRQKLPLHLLGAMTQFHAWWHILTGLGSYLHILFSMYTRTLYLKYRPKVKFLLGVWPVIWVETSMKKQ
SIO_010081: acer3
subclass of: SO_0000673
so part of: acer3
location: complement(join(1116637..1116693,1119392..1119437,1134681..1134788,1141728..1141829,1145939..1145997,1192259..1192294,1195488..1195569,1214063..1214115,1219541..1219593,1261706..1261816,1305931..1306033))
location: region:1116637-1306033:-1
so has part: feature:1305931-1306033:-1:exon
so has part: feature:1261706-1261816:-1:exon
so has part: feature:1219541-1219593:-1:exon
so has part: feature:1214063-1214115:-1:exon
so has part: feature:1195488-1195569:-1:exon
so has part: feature:1192259-1192294:-1:exon
so has part: feature:1145939-1145997:-1:exon
so has part: feature:1141728-1141829:-1:exon
so has part: feature:1134681-1134788:-1:exon
so has part: feature:1119392-1119437:-1:exon
so has part: feature:1116637-1116693:-1:exon

XP_055520797.1
type: Protein
SIO_000068: ncbiprotein

position:1116637:-1
position: 1116637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1306033:-1
position: 1306033
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1305931-1306033:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1261706-1261816:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1219541-1219593:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1214063-1214115:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1195488-1195569:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1192259-1192294:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1145939-1145997:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1141728-1141829:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1134681-1134788:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1119392-1119437:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1116637-1116693:-1:exon

acer3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: acer3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: alkaline ceramidase 3 isoform X2
translation: MILPPIYGAIQTVKDGLETRYLAAFLGLAAVGIGSWCFHMTLKYEMQLLDELPMIYSCCIFVYCLYECFKHKNTRNYLLAFILALFSGLVTIVYLQWKEPVFHQVMYGFLVGCLVLRSIYIVTWVYPWLRPLAYTSLGVFLMGFILWNVDNILCDNLRTIRQKLPLHLLGAMTQFHAWWHILTGLGSYLHILFSMYTRTLYLKYRPKVKFLLGVWPVIWVETSMKKQ
SIO_010081: acer3
subclass of: SO_0000673
so part of: acer3
location: complement(join(1116637..1116693,1119392..1119437,1134681..1134788,1141728..1141829,1145939..1145997,1192259..1192294,1195488..1195569,1214063..1214115,1219541..1219593,1261706..1261793))
location: region:1116637-1261793:-1
so has part: feature:1261706-1261793:-1:exon
so has part: feature:1219541-1219593:-1:exon
so has part: feature:1214063-1214115:-1:exon
so has part: feature:1195488-1195569:-1:exon
so has part: feature:1192259-1192294:-1:exon
so has part: feature:1145939-1145997:-1:exon
so has part: feature:1141728-1141829:-1:exon
so has part: feature:1134681-1134788:-1:exon
so has part: feature:1119392-1119437:-1:exon
so has part: feature:1116637-1116693:-1:exon

XP_055520798.1
type: Protein
SIO_000068: ncbiprotein

position:1261793:-1
position: 1261793
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1261706-1261793:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1219541-1219593:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1214063-1214115:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1195488-1195569:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1192259-1192294:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1145939-1145997:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1141728-1141829:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1134681-1134788:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1119392-1119437:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1116637-1116693:-1:exon

tsku
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: tsku
note: tsukushi small leucine rich proteoglycan homolog (Xenopus laevis); Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1327476..1340980)
location: region:1327476-1340980:-1
so has part: feature:1327476-1340980:-1:exon
subclass of: SO_0000010

129715005
type: Gene
SIO_000068: ncbigene

position:1327476:-1
position: 1327476
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1340980:-1
position: 1340980
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1327476-1340980:-1:exon

tsku
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: tsku
product: tsukushi small leucine rich proteoglycan homolog (Xenopus laevis)
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_055664821.1
SIO_010081: tsku
subclass of: SO_0000673
so part of: tsku
location: complement(join(1327476..1328926,1340682..1340980))
location: region:1327476-1340980:-1
so has part: feature:1340682-1340980:-1:exon
so has part: feature:1327476-1328926:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1340682-1340980:-1:exon

position:1340682:-1
position: 1340682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1327476-1328926:-1:exon

position:1328926:-1
position: 1328926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

tsku
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: tsku
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tsukushi
translation: MACSAWLAVLAFLVSCDRGLMTCLPECHCEVESFGMFSSFSLTKVDCSGVGPHLTVIPIPLDTSYLDLSHNRLKAVSPQMFTGPGYTMLMSLDLSYNEITGMSSSTFSKLRYLEALNLSHNSLEVLEEGIFTNLPLGEVDLSSNKLRSINLDTFTSKGHMKPLSLDLSGNMITAVARSLDKAIPNIYSLELSGNRLDTVPSRYLSNIPLRYLGLARNAISSIPGDAFTGLQELTSLSLRGLPALSDLSPSSFRGLQNLQVLDLSHNGNLRSLDLAVFEGLGSLQELRLEMSGVASLPDVILNHLPAIKTITIGASLLRCGKTTKEGSFHRQFGFGQREQSLHCIDVSGSSNIQYTLKLK
SIO_010081: tsku
subclass of: SO_0000673
so part of: tsku
location: complement(1327840..1328919)
location: region:1327840-1328919:-1
so has part: feature:1327840-1328919:-1:exon

XP_055520796.1
type: Protein
SIO_000068: ncbiprotein

position:1327840:-1
position: 1327840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1328919:-1
position: 1328919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1327840-1328919:-1:exon

trnae-uuc
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: trnae-uuc
note: transfer RNA glutamic acid (anticodon UUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 1335182..1335253
location: region:1335182-1335253:1
so has part: feature:1335182-1335253:1:exon
subclass of: SO_0000663

129715008
type: Gene
SIO_000068: ncbigene

position:1335182:1
position: 1335182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1335253:1
position: 1335253
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1335182-1335253:1:exon

trnae-uuc
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7782
gene: trnae-uuc
product: tRNA-Glu
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA glutamic acid (anticodon UUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:1335215..1335217,aa:Glu,seq:ttc)
SIO_010081: trnae-uuc
subclass of: SO_0000673
so part of: trnae-uuc
location: 1335182..1335253
location: region:1335182-1335253:1
so has part: feature:1335182-1335253:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1335182-1335253:1:exon

trnae-uuc
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: trnae-uuc
note: transfer RNA glutamic acid (anticodon UUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 1335919..1335990
location: region:1335919-1335990:1
so has part: feature:1335919-1335990:1:exon
subclass of: SO_0000663

129715009
type: Gene
SIO_000068: ncbigene

position:1335919:1
position: 1335919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1335990:1
position: 1335990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1335919-1335990:1:exon

trnae-uuc
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7782
gene: trnae-uuc
product: tRNA-Glu
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA glutamic acid (anticodon UUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:1335952..1335954,aa:Glu,seq:ttc)
SIO_010081: trnae-uuc
subclass of: SO_0000673
so part of: trnae-uuc
location: 1335919..1335990
location: region:1335919-1335990:1
so has part: feature:1335919-1335990:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1335919-1335990:1:exon

trnae-uuc
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: trnae-uuc
note: transfer RNA glutamic acid (anticodon UUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 1336995..1337066
location: region:1336995-1337066:1
so has part: feature:1336995-1337066:1:exon
subclass of: SO_0000663

129715010
type: Gene
SIO_000068: ncbigene

position:1336995:1
position: 1336995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1337066:1
position: 1337066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1336995-1337066:1:exon

trnae-uuc
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7782
gene: trnae-uuc
product: tRNA-Glu
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA glutamic acid (anticodon UUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:1337028..1337030,aa:Glu,seq:ttc)
SIO_010081: trnae-uuc
subclass of: SO_0000673
so part of: trnae-uuc
location: 1336995..1337066
location: region:1336995-1337066:1
so has part: feature:1336995-1337066:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1336995-1337066:1:exon

gucy2f
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: gucy2f
note: guanylate cyclase 2F, retinal; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1396104..1478566
location: region:1396104-1478566:1
so has part: feature:1396104-1478566:1:exon
subclass of: SO_0000010

129715004
type: Gene
SIO_000068: ncbigene

position:1396104:1
position: 1396104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1478566:1
position: 1478566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1396104-1478566:1:exon

gucy2f
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7782
gene: gucy2f
product: guanylate cyclase 2F, retinal
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins
transcript id: XM_055664819.1
SIO_010081: gucy2f
subclass of: SO_0000673
so part of: gucy2f
location: join(1396104..1396870,1414187..1414488,1418228..1418579,1423140..1423224,1423379..1423475,1428064..1428198,1437198..1437278,1439358..1439534,1440736..1440892,1445737..1445886,1450413..1450561,1452645..1452808,1455908..1456100,1457682..1457856,1461518..1461616,1464487..1464581,1468225..1468310,1478183..1478566)
location: region:1396104-1478566:1
so has part: feature:1396104-1396870:1:exon
so has part: feature:1414187-1414488:1:exon
so has part: feature:1418228-1418579:1:exon
so has part: feature:1423140-1423224:1:exon
so has part: feature:1423379-1423475:1:exon
so has part: feature:1428064-1428198:1:exon
so has part: feature:1437198-1437278:1:exon
so has part: feature:1439358-1439534:1:exon
so has part: feature:1440736-1440892:1:exon
so has part: feature:1445737-1445886:1:exon
so has part: feature:1450413-1450561:1:exon
so has part: feature:1452645-1452808:1:exon
so has part: feature:1455908-1456100:1:exon
so has part: feature:1457682-1457856:1:exon
so has part: feature:1461518-1461616:1:exon
so has part: feature:1464487-1464581:1:exon
so has part: feature:1468225-1468310:1:exon
so has part: feature:1478183-1478566:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1396104-1396870:1:exon

position:1396870:1
position: 1396870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1414187-1414488:1:exon

position:1414187:1
position: 1414187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1414488:1
position: 1414488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1418228-1418579:1:exon

position:1418228:1
position: 1418228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1418579:1
position: 1418579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1423140-1423224:1:exon

position:1423140:1
position: 1423140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1423224:1
position: 1423224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1423379-1423475:1:exon

position:1423379:1
position: 1423379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1423475:1
position: 1423475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1428064-1428198:1:exon

position:1428064:1
position: 1428064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1428198:1
position: 1428198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1437198-1437278:1:exon

position:1437198:1
position: 1437198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1437278:1
position: 1437278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1439358-1439534:1:exon

position:1439358:1
position: 1439358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1439534:1
position: 1439534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1440736-1440892:1:exon

position:1440736:1
position: 1440736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1440892:1
position: 1440892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1445737-1445886:1:exon

position:1445737:1
position: 1445737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1445886:1
position: 1445886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1450413-1450561:1:exon

position:1450413:1
position: 1450413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1450561:1
position: 1450561
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1452645-1452808:1:exon

position:1452645:1
position: 1452645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1452808:1
position: 1452808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1455908-1456100:1:exon

position:1455908:1
position: 1455908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1456100:1
position: 1456100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1457682-1457856:1:exon

position:1457682:1
position: 1457682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1457856:1
position: 1457856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:1461518-1461616:1:exon

position:1461518:1
position: 1461518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1461616:1
position: 1461616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:1464487-1464581:1:exon

position:1464487:1
position: 1464487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1464581:1
position: 1464581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:1468225-1468310:1:exon

position:1468225:1
position: 1468225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1468310:1
position: 1468310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:1478183-1478566:1:exon

position:1478183:1
position: 1478183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

gucy2f
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: gucy2f
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: retinal guanylyl cyclase 2
translation: MLILCWTLGGFLLEFSNHPRWSAPQKHKHFVKLTFVPSSWWLLLGLLALMHQAHSLRLKIGVVGPWNCDPGFSKALPDLAAKLAMDRIKREKLLQRGFEVEYTVLADDCQTSKALTNFMGFGKHVSVFLGPVNPGYCEAASLMGKYWNKAIFSWACVNFQLDNTISHPTFVRTLLSPAKVLFSVMKHFLWAHIGIISSNENIWVDTANKLANALRYNGLPVGIVRSMGYTDEDVSNTLTKIKNVPDLRVIVMCMHSVLIGGQEQSTFLRQAHDMGLTDGRYVFIPYDTLLYSLPYKNATYSALRNNSKLSAAYDAVLTITMASEEMSFHEAFSKAQESGEITTSQRAEEVSPLFGTIYDGVYFIAKTIQNVLRDGAHISGRTLANHTKFLNFTGFSQKLATGEGGEGIADYVILDTDGRSDRLLPTYTINMETETLQYGDTVHFPGGSPPNADSYCWFEPNIICTGGIELKVVILGFALIIGLALCGLVAAYFIRRRIQHIQMVKGPNKIIMTFEDLTFINPQLSKKKLTLDDLSDGRSMSERKSVKSMGLSMSGRSSAVVSHENSNIAVYEGDWVWLKKLDSRSNQEVQKSTTKILRKMRDLRNENVNPFLGFLCDRGVLAIATEHCSRGSLHDLLRNDDVKLDWMFKSSLLLDLIKGMKYLHHRDFPHGRLKSRNCVVDGRFVLKVVDYGYIDLMDAQKVPHQNPAPEELFWTAPEFLRDPELSRKATMKGDTYSFAIILQEVVVRGSPYCMLGLSPEEIIKKVKKPPPMCRPTVSPDQAPLECIQLMKQCWSELPDRRPTFNEIFDRFKILNKGKKTNIIDSMLRMLEQYSSNLEDLIRERTEELEVEKQKTEKLLSQMLPPSVAETLKTGGNVEPEYFDEVTIYFSDIVGFTTISAMSEPIQVIDLLNDLYTLFDAVLGNHDVYKVETIGDAYMVASGLPQRNGNRHAAEIANMSLHLLSSVGSFRMRHMPEVPVKIRIGIHSGPCVAGVVGLTMPRYCLFGDTINTASRMESTSLPYRIHVNQSTVKILRSLNKGYKIQVRGLTELKGKGIEETYWLVGKDDFTDPLPEPPAIKPGENWQRTVTEEIKTQFRNKVTDKQKA
SIO_010081: gucy2f
subclass of: SO_0000673
so part of: gucy2f
location: join(1396126..1396870,1414187..1414488,1418228..1418579,1423140..1423224,1423379..1423475,1428064..1428198,1437198..1437278,1439358..1439534,1440736..1440892,1445737..1445886,1450413..1450561,1452645..1452808,1455908..1456100,1457682..1457856,1461518..1461616,1464487..1464581,1468225..1468310,1478183..1478261)
location: region:1396126-1478261:1
so has part: feature:1396126-1396870:1:exon
so has part: feature:1414187-1414488:1:exon
so has part: feature:1418228-1418579:1:exon
so has part: feature:1423140-1423224:1:exon
so has part: feature:1423379-1423475:1:exon
so has part: feature:1428064-1428198:1:exon
so has part: feature:1437198-1437278:1:exon
so has part: feature:1439358-1439534:1:exon
so has part: feature:1440736-1440892:1:exon
so has part: feature:1445737-1445886:1:exon
so has part: feature:1450413-1450561:1:exon
so has part: feature:1452645-1452808:1:exon
so has part: feature:1455908-1456100:1:exon
so has part: feature:1457682-1457856:1:exon
so has part: feature:1461518-1461616:1:exon
so has part: feature:1464487-1464581:1:exon
so has part: feature:1468225-1468310:1:exon
so has part: feature:1478183-1478261:1:exon

XP_055520794.1
type: Protein
SIO_000068: ncbiprotein

position:1396126:1
position: 1396126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1478261:1
position: 1478261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1396126-1396870:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1414187-1414488:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1418228-1418579:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1423140-1423224:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1423379-1423475:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1428064-1428198:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1437198-1437278:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1439358-1439534:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1440736-1440892:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1445737-1445886:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1450413-1450561:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1452645-1452808:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1455908-1456100:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1457682-1457856:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1461518-1461616:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1464487-1464581:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1468225-1468310:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1478183-1478261:1:exon