Leucoraja erinacea ecotype New England chromosome 44, Leri_hhj_1, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Rajiformes; Rajidae; Leucoraja.
REFSEQ INFORMATION: The reference sequence is identical to\nCM054050.1.\nAssembly name: Leri_hhj_1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Okinawa Institute of Science\nand Technology on 2023/02/22. The original whole-genome shotgun\nproject has the accession JAMYXN000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Okinawa Institute of Science and\n Technology\nAssembly Date :: 21-FEB-2019\nAssembly Method :: dbg2olc v. 20160205\nAssembly Name :: Leri_hhj_1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 150.0x\nSequencing Technology :: Illumina; PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_028641065.1-RS_2023_04\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 04/21/2023\n##Genome-Annotation-Data-END##
pecanex-like protein 3; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
signal-induced proliferation-associated 1-like protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
signal-induced proliferation-associated 1-like protein 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 35 Proteins
signal-induced proliferation-associated 1-like protein 2, transcript variant X2
signal-induced proliferation-associated 1-like protein 2
insulinoma-associated protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
breast cancer metastasis-suppressor 1 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
breast cancer metastasis-suppressor 1 homolog, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 8 Proteins
breast cancer metastasis-suppressor 1 homolog, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST
breast cancer metastasis-suppressor 1 homolog, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 20 Proteins
breast cancer metastasis-suppressor 1 homolog isoform X1
breast cancer metastasis-suppressor 1 homolog isoform X2
breast cancer metastasis-suppressor 1 homolog isoform X3
latent transforming growth factor beta binding protein 3; Derived by automated computational analysis using gene prediction method: Gnomon.
latent transforming growth factor beta binding protein 3, transcript variant X4
COORDINATES: polyA evidence [ECO:0006239]
latent transforming growth factor beta binding protein 3, transcript variant X2
latent transforming growth factor beta binding protein 3, transcript variant X3
latent transforming growth factor beta binding protein 3, transcript variant X1
latent transforming growth factor beta binding protein 3, transcript variant X5
latent-transforming growth factor beta-binding protein 3 isoform X2
latent-transforming growth factor beta-binding protein 3 isoform X3
latent-transforming growth factor beta-binding protein 3 isoform X4
latent-transforming growth factor beta-binding protein 3 isoform X1
latent-transforming growth factor beta-binding protein 3 isoform X5
FERM domain containing 8; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
Ras converting CAAX endopeptidase 1a; Derived by automated computational analysis using gene prediction method: Gnomon.
Ras converting CAAX endopeptidase 1a, transcript variant X1
Ras converting CAAX endopeptidase 1a, transcript variant X2
DUF4554 domain-containing protein; Derived by automated computational analysis using gene prediction method: Gnomon.
type 2 DNA topoisomerase 6 subunit B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
type 2 DNA topoisomerase 6 subunit B-like
probable G-protein coupled receptor 75; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: probable G-protein coupled receptor 75
acylphosphatase-2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
acylphosphatase-2-like, transcript variant X1
acylphosphatase-2-like, transcript variant X2
uncharacterized protein LOC129714962 isoform X1
spectrin beta chain, non-erythrocytic 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
spectrin beta chain, non-erythrocytic 1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 43 Proteins
spectrin beta chain, non-erythrocytic 1-like, transcript variant X1
spectrin beta chain, non-erythrocytic 1-like isoform X1
spectrin beta chain, non-erythrocytic 1-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 16 Proteins
spectrin beta chain, non-erythrocytic 1-like isoform X2
prokineticin receptor 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 Proteins
RNA-binding protein 4B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129714991; Derived by automated computational analysis using gene prediction method: Gnomon.
centromere protein F-like; Derived by automated computational analysis using gene prediction method: Gnomon.
centromere protein F-like, transcript variant X2
centromere protein F-like, transcript variant X1
G protein-coupled receptor 137Ba-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ADP-ribose glycohydrolase MACROD1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ADP-ribose glycohydrolase MACROD1-like, transcript variant X2
ADP-ribose glycohydrolase MACROD1-like, transcript variant X1
ADP-ribose glycohydrolase MACROD1-like isoform X2
ADP-ribose glycohydrolase MACROD1-like isoform X1
leucine-rich repeat transmembrane protein FLRT1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
leucine-rich repeat transmembrane protein FLRT1-like, transcript variant X1
leucine-rich repeat transmembrane protein FLRT1-like, transcript variant X2
leucine-rich repeat transmembrane protein FLRT1-like isoform X1
leucine-rich repeat transmembrane protein FLRT1-like isoform X2
RILP-like protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
stress-induced phosphoprotein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
fermitin family homolog 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
leucine-rich repeat neuronal protein 4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
leucine-rich repeat neuronal protein 4-like
histone H3.3A; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 66 Proteins
proton-coupled zinc antiporter SLC30A1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
proton-coupled zinc antiporter SLC30A1-like
uncharacterized LOC129714984; Derived by automated computational analysis using gene prediction method: Gnomon.
UBX domain protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
distal membrane arm assembly component 1; Derived by automated computational analysis using gene prediction method: Gnomon.
distal membrane arm assembly component 1
distal membrane-arm assembly complex protein 1
dipeptidyl-peptidase 3; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: dipeptidyl peptidase 3
E3 ubiquitin-protein ligase pellino homolog 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
E3 ubiquitin-protein ligase pellino homolog 3-like