Leucoraja erinacea ecotype New England chromosome 43, Leri_hhj_1, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Rajiformes; Rajidae; Leucoraja.
REFSEQ INFORMATION: The reference sequence is identical to\nCM054049.1.\nAssembly name: Leri_hhj_1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Okinawa Institute of Science\nand Technology on 2023/02/22. The original whole-genome shotgun\nproject has the accession JAMYXN000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Okinawa Institute of Science and\n Technology\nAssembly Date :: 21-FEB-2019\nAssembly Method :: dbg2olc v. 20160205\nAssembly Name :: Leri_hhj_1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 150.0x\nSequencing Technology :: Illumina; PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_028641065.1-RS_2023_04\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 04/21/2023\n##Genome-Annotation-Data-END##
kinesin family member 9; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein
Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129714864; Derived by automated computational analysis using gene prediction method: Gnomon.
SET domain containing 2, histone lysine methyltransferase; Derived by automated computational analysis using gene prediction method: Gnomon.
SET domain containing 2, histone lysine methyltransferase, transcript variant X1
COORDINATES: polyA evidence [ECO:0006239]
SET domain containing 2, histone lysine methyltransferase, transcript variant X2
SET domain containing 2, histone lysine methyltransferase, transcript variant X3
histone-lysine N-methyltransferase SETD2 isoform X1
histone-lysine N-methyltransferase SETD2 isoform X2
histone-lysine N-methyltransferase SETD2 isoform X3
tumor necrosis factor receptor superfamily member 16-like; Derived by automated computational analysis using gene prediction method: Gnomon.
tumor necrosis factor receptor superfamily member 16-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
uncharacterized protein LOC571260 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized protein LOC571260 homolog
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: D-threo-3-hydroxyaspartate dehydratase
kelch-like family member 18; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins
myosin light chain 1, cardiac muscle-like; Derived by automated computational analysis using gene prediction method: Gnomon.
myosin light chain 1, cardiac muscle-like, transcript variant X2
myosin light chain 1, cardiac muscle-like, transcript variant X1
myosin light chain 1, cardiac muscle-like
microtubule-associated protein 4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
microtubule-associated protein 4-like, transcript variant X13
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 3 Proteins
microtubule-associated protein 4-like, transcript variant X15
microtubule-associated protein 4-like, transcript variant X14
microtubule-associated protein 4-like, transcript variant X16
microtubule-associated protein 4-like, transcript variant X6
microtubule-associated protein 4-like, transcript variant X11
microtubule-associated protein 4-like, transcript variant X7
microtubule-associated protein 4-like, transcript variant X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 4 Proteins
microtubule-associated protein 4-like, transcript variant X12
microtubule-associated protein 4-like, transcript variant X2
microtubule-associated protein 4-like, transcript variant X1
microtubule-associated protein 4-like, transcript variant X5
microtubule-associated protein 4-like, transcript variant X4
microtubule-associated protein 4-like, transcript variant X10
microtubule-associated protein 4-like, transcript variant X9
microtubule-associated protein 4-like, transcript variant X3
microtubule-associated protein 4-like isoform X1
microtubule-associated protein 4-like isoform X6
microtubule-associated protein 4-like isoform X10
microtubule-associated protein 4-like isoform X3
microtubule-associated protein 4-like isoform X4
microtubule-associated protein 4-like isoform X9
microtubule-associated protein 4-like isoform X11
microtubule-associated protein 4-like isoform X13
microtubule-associated protein 4-like isoform X2
microtubule-associated protein 4-like isoform X5
microtubule-associated protein 4-like isoform X12
microtubule-associated protein 4-like isoform X14
microtubule-associated protein 4-like isoform X7
microtubule-associated protein 4-like isoform X8
transfer RNA glycine (anticodon ACC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
DEAH (Asp-Glu-Ala-His) box helicase 30; Derived by automated computational analysis using gene prediction method: Gnomon.
DEAH (Asp-Glu-Ala-His) box helicase 30, transcript variant X2
DEAH (Asp-Glu-Ala-His) box helicase 30, transcript variant X1
DEAH (Asp-Glu-Ala-His) box helicase 30, transcript variant X3
ATP-dependent RNA helicase DHX30 isoform X2
ATP-dependent RNA helicase DHX30 isoform X1
ATP-dependent RNA helicase DHX30 isoform X3
KAT8 regulatory NSL complex subunit 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
KAT8 regulatory NSL complex subunit 1-like, transcript variant X2
KAT8 regulatory NSL complex subunit 1-like, transcript variant X1
KAT8 regulatory NSL complex subunit 1-like isoform X2
KAT8 regulatory NSL complex subunit 1-like isoform X1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1a; Derived by automated computational analysis using gene prediction method: Gnomon.
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1a, transcript variant X3
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1a, transcript variant X1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1a, transcript variant X2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1a, transcript variant X4
SWI/SNF complex subunit SMARCC1 isoform X1
SWI/SNF complex subunit SMARCC1 isoform X3
SWI/SNF complex subunit SMARCC1 isoform X2
SWI/SNF complex subunit SMARCC1 isoform X4
uncharacterized LOC129714869; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 2 Proteins
transfer RNA methionine (anticodon CAU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA arginine (anticodon ACG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA alanine (anticodon UGC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA tyrosine (anticodon GUA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA cysteine (anticodon GCA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA alanine (anticodon AGC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
E3 SUMO-protein ligase KIAA1586-like; Derived by automated computational analysis using gene prediction method: Gnomon.
transmembrane protein 71; Derived by automated computational analysis using gene prediction method: Gnomon.
transmembrane protein 71, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transmembrane protein 71, transcript variant X3
transmembrane protein 71, transcript variant X2
uncharacterized LOC129714876; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129714877; Derived by automated computational analysis using gene prediction method: Gnomon.
Cdk5 and Abl enzyme substrate 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Cdk5 and Abl enzyme substrate 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
Cdk5 and Abl enzyme substrate 1, transcript variant X2
Cdk5 and Abl enzyme substrate 1, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
transmembrane protein 241; Derived by automated computational analysis using gene prediction method: Gnomon.
transmembrane protein 241, transcript variant X5
transmembrane protein 241, transcript variant X2
transmembrane protein 241, transcript variant X1
transmembrane protein 241, transcript variant X4
transmembrane protein 241, transcript variant X3
jumonji domain containing 4; Derived by automated computational analysis using gene prediction method: Gnomon.
jumonji domain containing 4, transcript variant X2
jumonji domain containing 4, transcript variant X5
jumonji domain containing 4, transcript variant X9
jumonji domain containing 4, transcript variant X3
jumonji domain containing 4, transcript variant X4
jumonji domain containing 4, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 9 Proteins
jumonji domain containing 4, transcript variant X6
jumonji domain containing 4, transcript variant X1
jumonji domain containing 4, transcript variant X8
2-oxoglutarate and iron-dependent oxygenase JMJD4
ALS2 C-terminal-like protein; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 7 Proteins
uncharacterized LOC129714860; Derived by automated computational analysis using gene prediction method: Gnomon.
cathelicidin-2-like; Derived by automated computational analysis using gene prediction method: Gnomon.