Leucoraja erinacea mitochondrion, complete genome.
type: Entry
definition: Leucoraja erinacea mitochondrion, complete genome.
sequence version: NC_016429.1
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_016429.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Leucoraja erinacea (little skate)
organism: Leucoraja erinacea
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Rajiformes; Rajidae; Leucoraja.
reference: 1
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence is identical to JQ034406.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16724
topology: circular
so has quality: SO_0000988
location: 1..16724
location: region:1-16724:1
RO_0002162: 7782

NC_016429
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Community Annotation and Bioinformatics Workforce Development in Concert - Little Skate Genome Annotation Workshops and Jamborees
author: Wang, Q.
author: Arighi, C.N.
author: King, B.L.
author: Polson, S.W.
author: Vincent, J.
author: Chen, C.
author: Huang, H.
author: Kingham, B.F.
author: Page, S.T.
author: Rendino, M.F.
author: Thomas, W.K.
author: Udwary, D.W.
author: Wu, C.H.
author: Nasko, D.
author: Sabanayagam, C.
author: Sun, L.
author: Wang, Y.
author: Berninger, J.
author: Mahar, S.
author: Tan, E.
author: Wilson, J.J.
author: Coats, V.
author: Congdon, C.B.
author: Thompson, J.A.
author: Gagne, D.J.
author: Adediran, J.
author: Bregnard, T.
author: Cleary, A.C.
author: Grandpre, S.
author: Jenkins, B.
author: Killea, L.
author: Lefoley, B.
author: Mccusker, K.
author: Mokszycki, M.
author: O'Brien, M.
author: Octeau, J.C.
author: Shelales, S.
author: Spinard, E.
author: Stupalski, J.
author: Tran, L.
author: Wallace, J.
author: Cunniff, B.
journal: Unpublished

2
title: Direct Submission
journal: Submitted (06-DEC-2011) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Wang, Q.
author: Arighi, C.N.
author: King, B.L.
author: Polson, S.W.
author: Vincent, J.
author: Chen, C.
author: Huang, H.
author: Kingham, B.F.
author: Page, S.T.
author: Rendino, M.F.
author: Thomas, W.K.
author: Udwary, D.W.
author: Wu, C.H.
author: Nasko, D.
author: Sabanayagam, C.
author: Sun, L.
author: Wang, Y.
author: Berninger, J.
author: Mahar, S.
author: Tan, E.
author: Wilson, J.J.
author: Coats, V.
author: Congdon, C.B.
author: Thompson, J.A.
author: Gagne, D.J.
author: Adediran, J.
author: Bregnard, T.
author: Cleary, A.C.
author: Grandpre, S.
author: Jenkins, B.
author: Killea, L.
author: Lefoley, B.
author: Mccusker, K.
author: Mokszycki, M.
author: O'Brien, M.
author: Octeau, J.C.
author: Shelales, S.
author: Spinard, E.
author: Stupalski, J.
author: Tran, L.
author: Wallace, J.
author: Cunniff, B.
journal: Submitted (16-NOV-2011) Mount Desert Island Biological Laboratory, PO Box 35, Old Bar Harbor Rd, Salisbury Cove, ME 04672, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16724:1
position: 16724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16724:1:source
so part of: sequence
organism: Leucoraja erinacea
organelle: mitochondrion
mol type: genomic DNA

7782
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7782
product: tRNA-Phe
so part of: sequence
location: 1..69
location: region:1-69:1
so has part: feature:1-69:1:region

position:69:1
position: 69
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-69:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 7782
product: s-rRNA
note: 12S ribosomal RNA
so part of: sequence
location: 70..1036
location: region:70-1036:1
so has part: feature:70-1036:1:region

position:70:1
position: 70
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1036:1
position: 1036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:70-1036:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7782
product: tRNA-Val
so part of: sequence
location: 1037..1108
location: region:1037-1108:1
so has part: feature:1037-1108:1:region

position:1037:1
position: 1037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1108:1
position: 1108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1037-1108:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 7782
product: l-rRNA
note: 16S ribosomal RNA
so part of: sequence
location: 1109..2787
location: region:1109-2787:1
so has part: feature:1109-2787:1:region

position:1109:1
position: 1109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2787:1
position: 2787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1109-2787:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7782
product: tRNA-Leu
so part of: sequence
location: 2788..2862
location: region:2788-2862:1
so has part: feature:2788-2862:1:region

position:2788:1
position: 2788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2862:1
position: 2862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2788-2862:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: ND1
so part of: sequence
location: 2863..3837
location: region:2863-3837:1
so has part: feature:2863-3837:1:exon
subclass of: SO_0000010

11452178
type: Gene
SIO_000068: ncbigene

position:2863:1
position: 2863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3837:1
position: 3837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2863-3837:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: ND1
note: NADH-ubiquinone oxidoreductase chain 1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MLKIIITQIIHPLTYIIPVLLATAFLTLVERKILGYMQLRKGPNVVGPYGLLQPIADGLKLFTKEPIRPSHSSHFLFLVTPTAALTLALLMWMPLPLPHSILNLNLGLLFILAVSSLTVYTILGSGWASNSKYALMGALRAVAQTISYEVTLGLILLSLVIMTGGFTLHTFNFTQETIWLLVPAWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNIEYAGGPFALFFLAEYSNILMMNTLSVILFMGVSYSPSFPQISTLSLMIKATALTILFLWIRASYPRFRYDQLMHLVWKNFLPLTLALILWHITLPTSLASLPPLT
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2863..3837
location: region:2863-3837:1
so has part: feature:2863-3837:1:exon

YP_004935518.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2863-3837:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7782
product: tRNA-Ile
so part of: sequence
location: 3838..3907
location: region:3838-3907:1
so has part: feature:3838-3907:1:region

position:3838:1
position: 3838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3907:1
position: 3907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3838-3907:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7782
product: tRNA-Gln
so part of: sequence
location: complement(3907..3978)
location: region:3907-3978:-1
so has part: feature:3907-3978:-1:region

position:3907:-1
position: 3907
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3978:-1
position: 3978
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3907-3978:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7782
product: tRNA-Met
so part of: sequence
location: 3980..4048
location: region:3980-4048:1
so has part: feature:3980-4048:1:region

position:3980:1
position: 3980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4048:1
position: 4048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3980-4048:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: ND2
so part of: sequence
location: 4049..5094
location: region:4049-5094:1
so has part: feature:4049-5094:1:exon
subclass of: SO_0000010

11452179
type: Gene
SIO_000068: ncbigene

position:4049:1
position: 4049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5094:1
position: 5094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4049-5094:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: ND2
note: NADH-ubiquinone oxidoreductase chain 2; TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:5093..5094,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPLVLSILILSLGLGTTITFMGSHWLLIWMGLEINTMAIIPLMIHQQHPRAVEATTKYFLTQATASALLLFAGTTNAWTTGQWNITDMLSPTSATLITLALALKIGLAPMHFWLPEVLQGLSLTTGLILSTWQKLAPFAILLQLYPLLNPNILMTLGVASIVIGGWSGLNQTQLRKILAYSSIAHLGWMITILHFAPNLALLNLALYIIMTTSMFLLFNTLNSTKINSISVSATKAPLLSIMSLVTLLSLGGLPPLSGFMPKWLILQEMTKQDLLIPATIMALATLLSLFFYLRLCYAMTLTISPTPIFFMSSWRTKTTQTNILLTITTSLSILLLPLTPTLLTLFT
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 4049..5094
location: region:4049-5094:1
so has part: feature:4049-5094:1:exon

YP_004935519.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4049-5094:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7782
product: tRNA-Trp
so part of: sequence
location: 5095..5163
location: region:5095-5163:1
so has part: feature:5095-5163:1:region

position:5095:1
position: 5095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5163:1
position: 5163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5095-5163:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7782
product: tRNA-Ala
so part of: sequence
location: complement(5165..5233)
location: region:5165-5233:-1
so has part: feature:5165-5233:-1:region

position:5165:-1
position: 5165
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5233:-1
position: 5233
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5165-5233:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7782
product: tRNA-Asn
so part of: sequence
location: complement(5234..5306)
location: region:5234-5306:-1
so has part: feature:5234-5306:-1:region

position:5234:-1
position: 5234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5306:-1
position: 5306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5234-5306:-1:region

rep_origin
type: Replication Origin
subclass of: SO_0000296
RO_0002162: 7782
note: light strand origin of replication
so part of: sequence
location: complement(5307..5343)
location: region:5307-5343:-1
so has part: feature:5307-5343:-1:region

position:5307:-1
position: 5307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5343:-1
position: 5343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5307-5343:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7782
product: tRNA-Cys
so part of: sequence
location: complement(5339..5406)
location: region:5339-5406:-1
so has part: feature:5339-5406:-1:region

position:5339:-1
position: 5339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5406:-1
position: 5406
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5339-5406:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7782
product: tRNA-Tyr
so part of: sequence
location: complement(5407..5476)
location: region:5407-5476:-1
so has part: feature:5407-5476:-1:region

position:5407:-1
position: 5407
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5476:-1
position: 5476
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5407-5476:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: COX1
so part of: sequence
location: 5478..7034
location: region:5478-7034:1
so has part: feature:5478-7034:1:exon
subclass of: SO_0000010

11452180
type: Gene
SIO_000068: ncbigene

position:5478:1
position: 5478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7034:1
position: 7034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5478-7034:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: COX1
note: cytochrome c oxidase subunit 1
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MAINRWLFSTNHKDIGTLYLIFGAWAGMVGTGLSLLIRAELSQPGSLLGDDQIYNVLVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGSPDMAFPRMNNMSFWLLPPSFLLLLASAGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILASINFITTIINMKPPAISQYQTPLFVWSILVTTVLLLMALPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHVVAYYSGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGSIKWETPLLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAGFVHWFPLFTGYTLHSTWAKIQFSIMFIGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNVVSSIGSLISLVAVIILLFIIWEAFASKREVLSIELSNTNVEWLHGCPPPYHTYEEPAFVQVQQPAY
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5478..7034
location: region:5478-7034:1
so has part: feature:5478-7034:1:exon

YP_004935520.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5478-7034:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7782
product: tRNA-Ser
so part of: sequence
location: complement(7035..7105)
location: region:7035-7105:-1
so has part: feature:7035-7105:-1:region

position:7035:-1
position: 7035
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7105:-1
position: 7105
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7035-7105:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7782
product: tRNA-Asp
so part of: sequence
location: 7106..7174
location: region:7106-7174:1
so has part: feature:7106-7174:1:region

position:7106:1
position: 7106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7174:1
position: 7174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7106-7174:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: COX2
so part of: sequence
location: 7181..7871
location: region:7181-7871:1
so has part: feature:7181-7871:1:exon
subclass of: SO_0000010

11452181
type: Gene
SIO_000068: ncbigene

position:7181:1
position: 7181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7871:1
position: 7871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7181-7871:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: COX2
note: cytochrome c oxidase subunit 2; TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:7871,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHPAQLGFQDAASPIMEELLHFHDHTLMIVFLISTLVLYIIVAMVTTKLTNKYILDSQEIEIVWTILPAIILIMIALPSLRILYLMDEINDPHITIKALGHQWYWSYEYTDYENLEFDSYMIQTEDLYPGQFRLLETDHRMVVPMESPIRILVTAEDVLHSWAIPALGVKMDAVPGRLNQAAFIISRPGVYYGQCSEICGANHSFMPIVVEAVPLEHFENWSSLMLEEV
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7181..7871
location: region:7181-7871:1
so has part: feature:7181-7871:1:exon

YP_004935521.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7181-7871:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7782
product: tRNA-Lys
so part of: sequence
location: 7872..7944
location: region:7872-7944:1
so has part: feature:7872-7944:1:region

position:7872:1
position: 7872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7944:1
position: 7944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7872-7944:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: ATP8
so part of: sequence
location: 7946..8113
location: region:7946-8113:1
so has part: feature:7946-8113:1:exon
subclass of: SO_0000010

11452182
type: Gene
SIO_000068: ncbigene

position:7946:1
position: 7946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8113:1
position: 8113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7946-8113:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: ATP8
note: ATP synthase protein 8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNLNPWFLIFLFSWLFFLIVLPHKLTSYLFNYSPTPKNTEKQKPEPWNWPWS
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7946..8113
location: region:7946-8113:1
so has part: feature:7946-8113:1:exon

YP_004935522.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7946-8113:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: ATP6
so part of: sequence
location: 8104..8787
location: region:8104-8787:1
so has part: feature:8104-8787:1:exon
subclass of: SO_0000010

11452183
type: Gene
SIO_000068: ncbigene

position:8104:1
position: 8104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8787:1
position: 8787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8104-8787:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: ATP6
note: ATP synthase subunit a
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: MILNFFDQFLSPSLLGLPLIALAIIMPAVIFQTPSNRWLNNRLITLQTWFINRFTHQLLQPLNLGGHKWAIILTALMLFLITINLLGLLPYTFTPTTQLSLNMAFALPLWLTTVLIGMLNQPTIALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVRLTANLTAGHLLMQLIATAAFVLISTMPAVAILTSIVLFLLTLLEVAVAMIQAYVFVLLLSLYLQENV
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 8104..8787
location: region:8104-8787:1
so has part: feature:8104-8787:1:exon

YP_004935523.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8104-8787:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: COX3
so part of: sequence
location: 8790..9575
location: region:8790-9575:1
so has part: feature:8790-9575:1:exon
subclass of: SO_0000010

11452184
type: Gene
SIO_000068: ncbigene

position:8790:1
position: 8790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9575:1
position: 9575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8790-9575:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: COX3
note: cytochrome c oxidase subunit 3
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit III
translation: MAHQAHAFHMVDPSPWPLTGAIAALLMTSGLAIWFHFHTMSLLLLGLILLTLTVIQWWRDVIREGTFQGHHTPPVQKGLRYGMILFITSEVFFFLGFFWAFYHASLAPTPELGGCWPPTGITPLDPFEVPLLNTAVLLASGVTVTWAHHSIMEGSRKEAIQALTLTVLLGFYFTALQAMEYYEAPFTIADGVYGTTFFVATGFHGLHVIIGSTFLLICLVRQILFHFTSEHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8790..9575
location: region:8790-9575:1
so has part: feature:8790-9575:1:exon

YP_004935524.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8790-9575:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7782
product: tRNA-Gly
so part of: sequence
location: 9577..9646
location: region:9577-9646:1
so has part: feature:9577-9646:1:region

position:9577:1
position: 9577
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9646:1
position: 9646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9577-9646:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: ND3
so part of: sequence
location: 9647..9995
location: region:9647-9995:1
so has part: feature:9647-9995:1:exon
subclass of: SO_0000010

11452185
type: Gene
SIO_000068: ncbigene

position:9647:1
position: 9647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9995:1
position: 9995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9647-9995:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: ND3
note: NADH-ubiquinone oxidoreductase chain 3; TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9995,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNLITLSIAIPALVSLILAFIAFWLPALNPDSEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLYSPLTTTLWASIIIILLTLGLVYEWLQGGLEWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9647..9995
location: region:9647-9995:1
so has part: feature:9647-9995:1:exon

YP_004935525.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9647-9995:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7782
product: tRNA-Arg
so part of: sequence
location: 9996..10064
location: region:9996-10064:1
so has part: feature:9996-10064:1:region

position:9996:1
position: 9996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10064:1
position: 10064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9996-10064:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: ND4L
so part of: sequence
location: 10065..10361
location: region:10065-10361:1
so has part: feature:10065-10361:1:exon
subclass of: SO_0000010

11452186
type: Gene
SIO_000068: ncbigene

position:10065:1
position: 10065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10361:1
position: 10361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10065-10361:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: ND4L
note: NADH-ubiquinone oxidoreductase chain 4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MTPIYFTITSAFILGLTGLAFNRSHLLSALICLEGMMLSLFIAIAIWSMVMSSPSLSLAPMVLLTFSACEASSGLALLVAATRTHGTDHLNNLNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 10065..10361
location: region:10065-10361:1
so has part: feature:10065-10361:1:exon

YP_004935526.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10065-10361:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: ND4
so part of: sequence
location: 10355..11735
location: region:10355-11735:1
so has part: feature:10355-11735:1:exon
subclass of: SO_0000010

11452187
type: Gene
SIO_000068: ncbigene

position:10355:1
position: 10355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11735:1
position: 11735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10355-11735:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: ND4
note: NADH-ubiquinone oxidoreductase chain 4; TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11735,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKILIPTLLLFPVSWIAPQKWMWTSTISNSLLIAALSLTWFKWDFEMGWNYSNLFLGVDPLSAPLLALTCWLLPLMLLASLKHLTTEPHKRQQIYISLLITLQALLIMAFSATEMILFYVMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLIALLVLQKDLGTLSMLILQYPNTYNPHSWASKFWWAACLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAVLLKLGGYGMMRIIVMLNPLTKEMAYPFLILAIWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVAAAILIQTPWSFAGATALMIAHGLVSSMLFCLANTNYERIHSRTLLLARGTQIILPLMGTSWFLANLANLALPPSPNLMGELLIISSLFKWSNWTIILTGTGVLLTASYSLYMFLMTQRGPTPQHLLFLTPSHTREHLLMYLHLLPTILLITKPELILGWTF
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10355..11735
location: region:10355-11735:1
so has part: feature:10355-11735:1:exon

YP_004935527.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10355-11735:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7782
product: tRNA-His
so part of: sequence
location: 11736..11804
location: region:11736-11804:1
so has part: feature:11736-11804:1:region

position:11736:1
position: 11736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11804:1
position: 11804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11736-11804:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7782
product: tRNA-Ser
so part of: sequence
location: 11805..11872
location: region:11805-11872:1
so has part: feature:11805-11872:1:region

position:11805:1
position: 11805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11872:1
position: 11872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11805-11872:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7782
product: tRNA-Leu
so part of: sequence
location: 11873..11944
location: region:11873-11944:1
so has part: feature:11873-11944:1:region

position:11873:1
position: 11873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11944:1
position: 11944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11873-11944:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: ND5
so part of: sequence
location: 11945..13780
location: region:11945-13780:1
so has part: feature:11945-13780:1:exon
subclass of: SO_0000010

11452188
type: Gene
SIO_000068: ncbigene

position:11945:1
position: 11945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13780:1
position: 13780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11945-13780:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: ND5
note: NADH-ubiquinone oxidoreductase chain 5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MNSIIFNSSFLLIFIILLYPLFLSITSPQESVSPNWASTHVKTAVKLSFFISLIPLFLFLDQGVESITTNWNWINLGPMNITMSFKFDLYSIIFTPVALYVTWSILEFALWYMHTDPNFNRFFKYLLLFLMTMVILITANNLFQLFIGWEGVGIMSFLLIGWWYSRADANTAALQAVIYNRIGDIGLILSMAWLAMNLNSWETQQMFILSKNTDLTLPLLGLVLAAAGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRLHPLIQDNQLILSACLCLGALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLDNEQDIRKMGGLHKLLPFTASSLTVGSLALTGMPFLSGFFSKDAIIEAMNTSNLNAWALTMTLLATSFTAIYSLRLIFFTLMNSPRFTPLAPINENNPLVLKPIKRLAYGSILAGLIITFNMTPTKTQILTMPLTLKLSALLVTIIGLLLALELTNLTKHQFKTHPTMLAHNFSNMLGYFPPIFHRLYPQINLHWAQTISTHLIDLTWNEKMGPKNKLVQQTSMIKLFTLPQQGFIKIYLMIFFLTLTLATLIMI
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11945..13780
location: region:11945-13780:1
so has part: feature:11945-13780:1:exon

YP_004935528.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11945-13780:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: ND6
so part of: sequence
location: complement(13777..14295)
location: region:13777-14295:-1
so has part: feature:13777-14295:-1:exon
subclass of: SO_0000010

11452176
type: Gene
SIO_000068: ncbigene

position:13777:-1
position: 13777
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14295:-1
position: 14295
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13777-14295:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: ND6
note: NADH-ubiquinone oxidoreductase chain 6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MIYLVFIMMLGFIMGLVAVASNPSPYYAALGLVVSAGVGCGLLVSSGSSFLSLVLFLIYLGGMLVVFAYTAALVAEPYPESWGDWSVLIYVLFYVGGLMYVNKHFVGGWGWGWFGGDEVNGLEVIRGDFSGVALLYSYGGYLLMLSGWMLLLALFVVLELTRGVSWGTLRVV
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13777..14295)
location: region:13777-14295:-1
so has part: feature:13777-14295:-1:exon

YP_004935529.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13777-14295:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7782
product: tRNA-Glu
so part of: sequence
location: complement(14297..14365)
location: region:14297-14365:-1
so has part: feature:14297-14365:-1:region

position:14297:-1
position: 14297
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14365:-1
position: 14365
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14297-14365:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 7782
gene: CYTB
so part of: sequence
location: 14369..15511
location: region:14369-15511:1
so has part: feature:14369-15511:1:exon
subclass of: SO_0000010

11452177
type: Gene
SIO_000068: ncbigene

position:14369:1
position: 14369
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15511:1
position: 15511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14369-15511:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7782
gene: CYTB
codon start: 1
transl table: 2
product: cytochrome b
translation: MTTNIRKTHPLFKIINSSLIDLPTPINISIWWNYGSLLGLCLIIQILTGLFLAMHYTPDISSAFSSVVHICRDVNYGWLIRNIHANGASLFFICIYIHIARGFYYGSYLNKETWNIGVILLFLLMATAFVGYVLPWGQMSFWGATVITNLLSAFPYIGNILVEWIWGGFSVDNATLTRFFAFHFLFPFLIVAFTLLHLIFLHEMGSNNPTGLNSNTDKILFHPYFSYKDLLGFFILMLILTLLALFAPNLLGDTENFIPADPLLTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMFVPLLHTSKQRSATFRPITQILFWTLLTNTIILTWIGGQPVEQPFIIIGQIASIVYFLLFLILLPLAGWWENKILNL
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14369..15511
location: region:14369-15511:1
so has part: feature:14369-15511:1:exon

YP_004935530.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14369-15511:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7782
product: tRNA-Thr
so part of: sequence
location: 15515..15587
location: region:15515-15587:1
so has part: feature:15515-15587:1:region

position:15515:1
position: 15515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15587:1
position: 15587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15515-15587:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 7782
product: tRNA-Pro
so part of: sequence
location: complement(15596..15664)
location: region:15596-15664:-1
so has part: feature:15596-15664:-1:region

position:15596:-1
position: 15596
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15664:-1
position: 15664
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15596-15664:-1:region

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 7782
note: control region
so part of: sequence
location: 15665..16724
location: region:15665-16724:1
so has part: feature:15665-16724:1:region

position:15665:1
position: 15665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15665-16724:1:region