Petromyzon marinus isolate kPetMar1 chromosome 83, kPetMar1.pri, whole genome shotgun sequence.
type: Entry
definition: Petromyzon marinus isolate kPetMar1 chromosome 83, kPetMar1.pri, whole genome shotgun sequence.
sequence version: NC_046151.1
sequence date: 2020-03-20
sequence: sequence
division: CON
label: NC_046151.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA611764
dblink: SAMN12629506
keyword: WGS
keyword: RefSeq
source: Petromyzon marinus (sea lamprey)
organism: Petromyzon marinus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Cyclostomata; Hyperoartia; Petromyzontiformes; Petromyzontidae; Petromyzon.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM021523.1.\nAssembly name: kPetMar1.pri\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2020/02/24. The original whole-genome shotgun project has the\naccession JAAIYE000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 09-DEC-2019\nAssembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v.\n DNANexus 1.0.6; purge_dups v. github\n ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b;\n scaff10x v. 4.1.0; Bionano Solve DLS v.\n 3.2.1; Salsa HiC v. 2.2; Arrow\n smrtanalysis Pacbio polishing & gap\n filling v. smrtlink_6.0.0.47841;\n longranger align v. 2.2.2; freebayes\n Illumina polishing v. 1.3.1; gEVAL manual\n curation v. 2019-12-09; VGP assembly\n pipeline individual v. 1.6\nAssembly Name :: kPetMar1.pri\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 62.36x\nSequencing Technology :: PacBio Sequel I CLR; llumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Petromyzon marinus Annotation\n Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.3\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 986397
topology: linear
so has quality: SO_0000987
location: 1..986397
location: region:1-986397:1
RO_0002162: 7757

NC_046151
type: RefSeq
SIO_000068: refseq

PRJNA611764
type: BioProject
SIO_000068: bioproject

SAMN12629506
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:986397:1
position: 986397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-986397:1:source
so part of: sequence
organism: Petromyzon marinus
mol type: genomic DNA
isolate: kPetMar1
chromosome: 83
sex: male
tissue type: sperm
dev stage: adult
country: USA: Great Lakes Fisheries Commission
lat lon: 42.2821 N 83.74847 W
collection date: 12-Jun-2018
collected by: Jeremiah Smith

7757
type: Taxonomy
SIO_000068: taxonomy

LOC116957710
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: LOC116957710
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(351..36621)
location: region:351-36621:-1
so has part: feature:351-36621:-1:exon
subclass of: SO_0000010

116957710
type: Gene
SIO_000068: ncbigene

position:351:-1
position: 351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:36621:-1
position: 36621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:351-36621:-1:exon

LOC116957710
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: LOC116957710
product: fibroin heavy chain-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032980028.1
SIO_010081: LOC116957710
subclass of: SO_0000673
so part of: LOC116957710
location: complement(join(351..546,1417..1637,3957..4231,6878..6904,9283..9344,14795..15677,15957..17400,36397..36621))
location: region:351-36621:-1
so has part: feature:36397-36621:-1:exon
so has part: feature:15957-17400:-1:exon
so has part: feature:14795-15677:-1:exon
so has part: feature:9283-9344:-1:exon
so has part: feature:6878-6904:-1:exon
so has part: feature:3957-4231:-1:exon
so has part: feature:1417-1637:-1:exon
so has part: feature:351-546:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:36397-36621:-1:exon

position:36397:-1
position: 36397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:15957-17400:-1:exon

position:15957:-1
position: 15957
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17400:-1
position: 17400
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:14795-15677:-1:exon

position:14795:-1
position: 14795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15677:-1
position: 15677
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:9283-9344:-1:exon

position:9283:-1
position: 9283
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9344:-1
position: 9344
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6878-6904:-1:exon

position:6878:-1
position: 6878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6904:-1
position: 6904
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3957-4231:-1:exon

position:3957:-1
position: 3957
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4231:-1
position: 4231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1417-1637:-1:exon

position:1417:-1
position: 1417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1637:-1
position: 1637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:351-546:-1:exon

position:546:-1
position: 546
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116957710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: LOC116957710
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: fibroin heavy chain-like
translation: MHRYGEERFPRGVGGGSPPPTAGSPLDSRFALLQQQQQQKAAFHYASPSRHPYRDAATAAPLKPPPPPPPPLSSSAPAAPAAAAAVNTSNASEVLTAFGLSPDDLTELSRYPSEQLTPENLPRLLGEVYVRRRQQQQQQQLQQQQQQQQQQQQQQQQRAVATGRPAAAARTEGAPSLRPPSAFTAAEALPRRAQAGDVQAGQLALHVVDYGHGRGSGPGERATPPLRHLPVRPPPPCPQPRPPYSGDVIDGGGYRETREAEWLREQQREQQREQQREQQREQRERRPQLERRALPPPPYPVRLDVGDASAGWRGPARDGYAGAYAERVEFKRPPLPSPSPSPPPQQSGEGGGSGGRSGRGGEGSGGRSGGGGSKSEEGGGRSGEGRGRSGEGSGKSGERSGNSGEGRGRSGERSGKSGERSGKSGEGSGRTGEGSGKSGEGRGRSGEGSGKSGEGSGKSGEGRGRSGERSGKSGERSGKSGERSGKSGEGSGKSGERSGKSGARSGKSGERSGKSGEGSGRTGEGRGKSGERSGKSGEGSGKSGERSGKSGEGSGRSGGKNGEGSGRSGEGSGRSGGRSQGGVAKLAPPGFASRLAQEPPHSFLLRDRALKKELENFYGRYVSNEPLHCHLCFMRSTGLKTWESHVNGRRHELRCELFKERFFKNGEYKGLTSPVASPAPPPAAAAAAAAAAAAPIVASRAAPPAGTTHGVASDPAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGASAAVTDETSEPRAAAATAGATAGTTAGATAAATAAATAGATAGATAGATAGATAGATAGATAGATAGATAVVAAPSPQQPQPAGLRKRSRVVCLSQLPCEESYKTMDVVHLAFPFGKVTKFVVTRRRRQVPEDTQAHGHTATRT
SIO_010081: LOC116957710
subclass of: SO_0000673
so part of: LOC116957710
location: complement(join(373..546,1417..1637,3957..4231,6878..6904,9283..9344,14795..15677,15957..16993))
location: region:373-16993:-1
so has part: feature:15957-16993:-1:exon
so has part: feature:14795-15677:-1:exon
so has part: feature:9283-9344:-1:exon
so has part: feature:6878-6904:-1:exon
so has part: feature:3957-4231:-1:exon
so has part: feature:1417-1637:-1:exon
so has part: feature:373-546:-1:exon

XP_032835919.1
type: Protein
SIO_000068: ncbiprotein

position:373:-1
position: 373
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16993:-1
position: 16993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15957-16993:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14795-15677:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:9283-9344:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6878-6904:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3957-4231:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1417-1637:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:373-546:-1:exon

LOC116957716
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: LOC116957716
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(46229..70657)
location: region:46229-70657:-1
so has part: feature:46229-70657:-1:exon
subclass of: SO_0000010

116957716
type: Gene
SIO_000068: ncbigene

position:46229:-1
position: 46229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:70657:-1
position: 70657
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46229-70657:-1:exon

LOC116957716
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: LOC116957716
product: secreted frizzled-related protein 1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 67% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032980036.1
SIO_010081: LOC116957716
subclass of: SO_0000673
so part of: LOC116957716
location: complement(join(46229..46362,48896..49171,56918..56995,58531..58804,58849..58858,59346..59437,69876..70657))
location: region:46229-70657:-1
so has part: feature:69876-70657:-1:exon
so has part: feature:59346-59437:-1:exon
so has part: feature:58849-58858:-1:exon
so has part: feature:58531-58804:-1:exon
so has part: feature:56918-56995:-1:exon
so has part: feature:48896-49171:-1:exon
so has part: feature:46229-46362:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:69876-70657:-1:exon

position:69876:-1
position: 69876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:59346-59437:-1:exon

position:59346:-1
position: 59346
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:59437:-1
position: 59437
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:58849-58858:-1:exon

position:58849:-1
position: 58849
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:58858:-1
position: 58858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:58531-58804:-1:exon

position:58531:-1
position: 58531
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:58804:-1
position: 58804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:56918-56995:-1:exon

position:56918:-1
position: 56918
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:56995:-1
position: 56995
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:48896-49171:-1:exon

position:48896:-1
position: 48896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:49171:-1
position: 49171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:46229-46362:-1:exon

position:46362:-1
position: 46362
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116957716
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: LOC116957716
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: secreted frizzled-related protein 1-like
translation: MMTVMMVAPVGNETAERGGGERGGGLGGEADDAGDGGHGDGGHGDGGDGGHGDRGHGDRGDGGHGDSGHGDGGDGGHGDGGHGDGGHGDGGEGGHGDGGHGDGGDGGHGDRGHGDRGDGGHGDGGHGDGGYGGHGDGGHGDRGDGGHGDGGHGDGGDGGHGDGSHGDGGHSDAGHGDDSHGDGGEGGHGDGGHGDDGETSPRASACLPIPRDLTLCRGLPYGLMRLPNLLQHDTLGEVRQQAGSWVRLVSRRCHPDTRLFLCSLFAPVCSSRREFAVWPCRSLCQAVRDACSPLMEAHGFPWPAMLACDTLPAETSGMCIRGLHAGRSGGGGGGGGGGGGGGDGGGDGGLGGRKLINATGGGGLPVCPQCEELETSQAILETFCSSEFALRIPAGLSVALLGPDLRLRAGRGRPPRLLKAGPLRPGDLGPRLPHPRGPAPDPAPSVAPPLVLRNGAACRCPQLEAPTQPGPFLVMGGVAKDRSLTVTGIVPLGRRALARRSGVEVARAMRNIKANRCPGFSTTF
SIO_010081: LOC116957716
subclass of: SO_0000673
so part of: LOC116957716
location: complement(join(46229..46362,48896..49171,56918..56995,58531..58804,58849..58858,59346..59437,69876..70586))
location: region:46229-70586:-1
so has part: feature:69876-70586:-1:exon
so has part: feature:59346-59437:-1:exon
so has part: feature:58849-58858:-1:exon
so has part: feature:58531-58804:-1:exon
so has part: feature:56918-56995:-1:exon
so has part: feature:48896-49171:-1:exon
so has part: feature:46229-46362:-1:exon

XP_032835927.1
type: Protein
SIO_000068: ncbiprotein

position:70586:-1
position: 70586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:69876-70586:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:59346-59437:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:58849-58858:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:58531-58804:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:56918-56995:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:48896-49171:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:46229-46362:-1:exon

LOC116957721
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: LOC116957721
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(106645..130799)
location: region:106645-130799:-1
so has part: feature:106645-130799:-1:exon
subclass of: SO_0000010

116957721
type: Gene
SIO_000068: ncbigene

position:106645:-1
position: 106645
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:130799:-1
position: 130799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:106645-130799:-1:exon

LOC116957721
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: LOC116957721
product: golgin subfamily A member 7-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_032980043.1
SIO_010081: LOC116957721
subclass of: SO_0000673
so part of: LOC116957721
location: complement(join(106645..106798,114523..114624,119090..119242,124880..125005,127117..127198,130697..130799))
location: region:106645-130799:-1
so has part: feature:130697-130799:-1:exon
so has part: feature:127117-127198:-1:exon
so has part: feature:124880-125005:-1:exon
so has part: feature:119090-119242:-1:exon
so has part: feature:114523-114624:-1:exon
so has part: feature:106645-106798:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:130697-130799:-1:exon

position:130697:-1
position: 130697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:127117-127198:-1:exon

position:127117:-1
position: 127117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:127198:-1
position: 127198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:124880-125005:-1:exon

position:124880:-1
position: 124880
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:125005:-1
position: 125005
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:119090-119242:-1:exon

position:119090:-1
position: 119090
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:119242:-1
position: 119242
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:114523-114624:-1:exon

position:114523:-1
position: 114523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:114624:-1
position: 114624
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:106645-106798:-1:exon

position:106798:-1
position: 106798
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116957721
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: LOC116957721
product: golgin subfamily A member 7-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_032980042.1
SIO_010081: LOC116957721
subclass of: SO_0000673
so part of: LOC116957721
location: complement(join(106645..106798,114523..114624,119090..119242,124880..125005,127117..127198,130610..130793))
location: region:106645-130793:-1
so has part: feature:130610-130793:-1:exon
so has part: feature:127117-127198:-1:exon
so has part: feature:124880-125005:-1:exon
so has part: feature:119090-119242:-1:exon
so has part: feature:114523-114624:-1:exon
so has part: feature:106645-106798:-1:exon

position:130793:-1
position: 130793
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:130610-130793:-1:exon

position:130610:-1
position: 130610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:127117-127198:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:124880-125005:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:119090-119242:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:114523-114624:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:106645-106798:-1:exon

LOC116957721
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: LOC116957721
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: golgin subfamily A member 7-like
translation: MAEVDSLTRAVPPGRLVAKAFVHRDYSLGTACRYHVHFPSELTGKVEAQQFEETLRGLNALFEEAERLDSHTYLESCLACLTAYLVYTCVETHYQKVLKRVSRFVCEQNEAVYVPRGLHITDPMERGLRVVEVSVYEDH
SIO_010081: LOC116957721
subclass of: SO_0000673
so part of: LOC116957721
location: complement(join(106769..106798,114523..114624,119090..119242,124880..125005,127117..127125))
location: region:106769-127125:-1
so has part: feature:127117-127125:-1:exon
so has part: feature:124880-125005:-1:exon
so has part: feature:119090-119242:-1:exon
so has part: feature:114523-114624:-1:exon
so has part: feature:106769-106798:-1:exon

XP_032835933.1
type: Protein
SIO_000068: ncbiprotein

position:106769:-1
position: 106769
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:127125:-1
position: 127125
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:127117-127125:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:124880-125005:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:119090-119242:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:114523-114624:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:106769-106798:-1:exon

LOC116957721
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: LOC116957721
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: golgin subfamily A member 7-like
translation: MAEVDSLTRAVPPGRLVAKAFVHRDYSLGTACRYHVHFPSELTGKVEAQQFEETLRGLNALFEEAERLDSHTYLESCLACLTAYLVYTCVETHYQKVLKRVSRFVCEQNEAVYVPRGLHITDPMERGLRVVEVSVYEDH
SIO_010081: LOC116957721
subclass of: SO_0000673
so part of: LOC116957721
location: complement(join(106769..106798,114523..114624,119090..119242,124880..125005,127117..127125))
location: region:106769-127125:-1
so has part: feature:127117-127125:-1:exon
so has part: feature:124880-125005:-1:exon
so has part: feature:119090-119242:-1:exon
so has part: feature:114523-114624:-1:exon
so has part: feature:106769-106798:-1:exon

XP_032835934.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:127117-127125:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:124880-125005:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:119090-119242:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:114523-114624:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:106769-106798:-1:exon

LOC116957708
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: LOC116957708
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 171026..181441
location: region:171026-181441:1
so has part: feature:171026-181441:1:exon
subclass of: SO_0000010

116957708
type: Gene
SIO_000068: ncbigene

position:171026:1
position: 171026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:181441:1
position: 181441
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:171026-181441:1:exon

LOC116957708
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: LOC116957708
product: putative lysozyme-like protein
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
transcript id: XM_032980027.1
SIO_010081: LOC116957708
subclass of: SO_0000673
so part of: LOC116957708
location: join(171026..171221,180305..181441)
location: region:171026-181441:1
so has part: feature:171026-171221:1:exon
so has part: feature:180305-181441:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:171026-171221:1:exon

position:171221:1
position: 171221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:180305-181441:1:exon

position:180305:1
position: 180305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116957708
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: LOC116957708
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: putative lysozyme-like protein
translation: MAPLRPPRFASLLLVASLLLVVLLVHLADSTPSSSSSTSSTSSHSGALRSRRRPAGRSSFSPSSSGKGGRSPSSSSSSSSSSSSSSSPSGGRGAGGRGGKSGAKARGWPTSGHFSTVGRGGGGGGGGGGGGRGGRGGGGGATGICRWHRWDDGERARVELSCTSTSSSTSTSSSTSATSSTTCVFEGRPGRTCRSPSSVSGGAPRRQRSYWRDAVKRLRSLAPSPCEASSSSSSSSSSSSSSSSSSSSAAAAAYVVTINPGGCGRDPSQMLTRVTSGGDGGGDGGGGGGGGGGGGGGGGGGGGGGGGGGGDVTPEEFAQENCPEGWWSLCSLAVGALSG
SIO_010081: LOC116957708
subclass of: SO_0000673
so part of: LOC116957708
location: 180320..181339
location: region:180320-181339:1
so has part: feature:180320-181339:1:exon

XP_032835918.1
type: Protein
SIO_000068: ncbiprotein

position:180320:1
position: 180320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:181339:1
position: 181339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:180320-181339:1:exon

IDH3B
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: IDH3B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 187487..251725
location: region:187487-251725:1
so has part: feature:187487-251725:1:exon
subclass of: SO_0000010

116957707
type: Gene
SIO_000068: ncbigene

position:187487:1
position: 187487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:251725:1
position: 251725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:187487-251725:1:exon

IDH3B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: IDH3B
product: isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_032980026.1
SIO_010081: IDH3B
subclass of: SO_0000673
so part of: IDH3B
location: join(187487..187868,193796..193864,195042..195140,200483..200603,210073..210133,214090..214222,219145..219278,220529..220631,227142..227236,234728..234788,251586..251725)
location: region:187487-251725:1
so has part: feature:187487-187868:1:exon
so has part: feature:193796-193864:1:exon
so has part: feature:195042-195140:1:exon
so has part: feature:200483-200603:1:exon
so has part: feature:210073-210133:1:exon
so has part: feature:214090-214222:1:exon
so has part: feature:219145-219278:1:exon
so has part: feature:220529-220631:1:exon
so has part: feature:227142-227236:1:exon
so has part: feature:234728-234788:1:exon
so has part: feature:251586-251725:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:187487-187868:1:exon

position:187868:1
position: 187868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:193796-193864:1:exon

position:193796:1
position: 193796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:193864:1
position: 193864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:195042-195140:1:exon

position:195042:1
position: 195042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:195140:1
position: 195140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:200483-200603:1:exon

position:200483:1
position: 200483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:200603:1
position: 200603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:210073-210133:1:exon

position:210073:1
position: 210073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:210133:1
position: 210133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:214090-214222:1:exon

position:214090:1
position: 214090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:214222:1
position: 214222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:219145-219278:1:exon

position:219145:1
position: 219145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:219278:1
position: 219278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:220529-220631:1:exon

position:220529:1
position: 220529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:220631:1
position: 220631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:227142-227236:1:exon

position:227142:1
position: 227142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:227236:1
position: 227236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:234728-234788:1:exon

position:234728:1
position: 234728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:234788:1
position: 234788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:251586-251725:1:exon

position:251586:1
position: 251586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

IDH3B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: IDH3B
product: isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 30 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_032980023.1
SIO_010081: IDH3B
subclass of: SO_0000673
so part of: IDH3B
location: join(187488..187868,193796..193864,195042..195140,200483..200603,210073..210133,214090..214222,219145..219278,220529..220631,221278..221424,227142..227236,234728..234788,251586..251725)
location: region:187488-251725:1
so has part: feature:187488-187868:1:exon
so has part: feature:193796-193864:1:exon
so has part: feature:195042-195140:1:exon
so has part: feature:200483-200603:1:exon
so has part: feature:210073-210133:1:exon
so has part: feature:214090-214222:1:exon
so has part: feature:219145-219278:1:exon
so has part: feature:220529-220631:1:exon
so has part: feature:221278-221424:1:exon
so has part: feature:227142-227236:1:exon
so has part: feature:234728-234788:1:exon
so has part: feature:251586-251725:1:exon

position:187488:1
position: 187488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:187488-187868:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:193796-193864:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:195042-195140:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:200483-200603:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:210073-210133:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:214090-214222:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:219145-219278:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:220529-220631:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:221278-221424:1:exon

position:221278:1
position: 221278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:221424:1
position: 221424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:227142-227236:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:234728-234788:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:251586-251725:1:exon

IDH3B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: IDH3B
product: isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 30 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_032980024.1
SIO_010081: IDH3B
subclass of: SO_0000673
so part of: IDH3B
location: join(187488..187868,193796..193864,195042..195140,200483..200603,210073..210133,214090..214222,219145..219278,220529..220631,221278..221424,227142..227236,234728..234788,241496..241599)
location: region:187488-241599:1
so has part: feature:187488-187868:1:exon
so has part: feature:193796-193864:1:exon
so has part: feature:195042-195140:1:exon
so has part: feature:200483-200603:1:exon
so has part: feature:210073-210133:1:exon
so has part: feature:214090-214222:1:exon
so has part: feature:219145-219278:1:exon
so has part: feature:220529-220631:1:exon
so has part: feature:221278-221424:1:exon
so has part: feature:227142-227236:1:exon
so has part: feature:234728-234788:1:exon
so has part: feature:241496-241599:1:exon

position:241599:1
position: 241599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:187488-187868:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:193796-193864:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:195042-195140:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:200483-200603:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:210073-210133:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:214090-214222:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:219145-219278:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:220529-220631:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:221278-221424:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:227142-227236:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:234728-234788:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:241496-241599:1:exon

position:241496:1
position: 241496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

IDH3B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: IDH3B
product: isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 53 samples with support for all annotated introns
transcript id: XM_032980025.1
SIO_010081: IDH3B
subclass of: SO_0000673
so part of: IDH3B
location: join(187488..187868,193796..193864,195042..195140,200483..200603,210073..210133,214090..214222,219145..219278,220529..220631,221278..221424,227142..227165,227330..227419)
location: region:187488-227419:1
so has part: feature:187488-187868:1:exon
so has part: feature:193796-193864:1:exon
so has part: feature:195042-195140:1:exon
so has part: feature:200483-200603:1:exon
so has part: feature:210073-210133:1:exon
so has part: feature:214090-214222:1:exon
so has part: feature:219145-219278:1:exon
so has part: feature:220529-220631:1:exon
so has part: feature:221278-221424:1:exon
so has part: feature:227142-227165:1:exon
so has part: feature:227330-227419:1:exon

position:227419:1
position: 227419
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:187488-187868:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:193796-193864:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:195042-195140:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:200483-200603:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:210073-210133:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:214090-214222:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:219145-219278:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:220529-220631:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:221278-221424:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:227142-227165:1:exon

position:227165:1
position: 227165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:227330-227419:1:exon

position:227330:1
position: 227330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

IDH3B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: IDH3B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1
translation: MANAALLRASTAGKAVSEAWARLGSRGLLTSAALQHSGDVIKPEGHYKVTVIPGDGVGPELMNSVREVFKAAAVPVELEEHHLSEVQDQASGDRLNEVVKSLDLTRVALKGKLYTPMEHKGDLASYEMKLRRRLDLFANVVRCKSLPGFTTRHNNLDLVVIREQTEGEYSSLEHESVPGVVESLKIITRDRSRRIAKFAFDYATKHGRSKVTAVHKANIMKLGDGLFLQCCEEVAALYPLIKYDTIIIDNCCMQLVSNPYQMDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSSEHAVFETGARHPFAQALGRNIANPTAILLSSSNMLRHLHMEYHANMIYDAVRKVIKTGKVRTADMGGYASTTEFTRNVISTMET
SIO_010081: IDH3B
subclass of: SO_0000673
so part of: IDH3B
location: join(187827..187868,193796..193864,195042..195140,200483..200603,210073..210133,214090..214222,219145..219278,220529..220631,221278..221424,227142..227236,234728..234788,251586..251663)
location: region:187827-251663:1
so has part: feature:187827-187868:1:exon
so has part: feature:193796-193864:1:exon
so has part: feature:195042-195140:1:exon
so has part: feature:200483-200603:1:exon
so has part: feature:210073-210133:1:exon
so has part: feature:214090-214222:1:exon
so has part: feature:219145-219278:1:exon
so has part: feature:220529-220631:1:exon
so has part: feature:221278-221424:1:exon
so has part: feature:227142-227236:1:exon
so has part: feature:234728-234788:1:exon
so has part: feature:251586-251663:1:exon

XP_032835914.1
type: Protein
SIO_000068: ncbiprotein

position:187827:1
position: 187827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:251663:1
position: 251663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:187827-187868:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:193796-193864:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:195042-195140:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:200483-200603:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:210073-210133:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:214090-214222:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:219145-219278:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:220529-220631:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:221278-221424:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:227142-227236:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:234728-234788:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:251586-251663:1:exon

IDH3B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: IDH3B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X4
translation: MANAALLRASTAGKAVSEAWARLGSRGLLTSAALQHSGDVIKPEGHYKVTVIPGDGVGPELMNSVREVFKAAAVPVELEEHHLSEVQDQASGDRLNEVVKSLDLTRVALKGKLYTPMEHKGDLASYEMKLRRRLDLFANVVRCKSLPGFTTRHNNLDLVVIREQTEGEYSSLEHESVPGVVESLKIITRDRSRRIAKFAFDYATKHGRSKVTAVHKANIMKLGDGLFLQCCEEVAALYPLIKYDTIIIDNCCMQGARHPFAQALGRNIANPTAILLSSSNMLRHLHMEYHANMIYDAVRKVIKTGKVRTADMGGYASTTEFTRNVISTMET
SIO_010081: IDH3B
subclass of: SO_0000673
so part of: IDH3B
location: join(187827..187868,193796..193864,195042..195140,200483..200603,210073..210133,214090..214222,219145..219278,220529..220631,227142..227236,234728..234788,251586..251663)
location: region:187827-251663:1
so has part: feature:187827-187868:1:exon
so has part: feature:193796-193864:1:exon
so has part: feature:195042-195140:1:exon
so has part: feature:200483-200603:1:exon
so has part: feature:210073-210133:1:exon
so has part: feature:214090-214222:1:exon
so has part: feature:219145-219278:1:exon
so has part: feature:220529-220631:1:exon
so has part: feature:227142-227236:1:exon
so has part: feature:234728-234788:1:exon
so has part: feature:251586-251663:1:exon

XP_032835917.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:187827-187868:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:193796-193864:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:195042-195140:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:200483-200603:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:210073-210133:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:214090-214222:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:219145-219278:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:220529-220631:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:227142-227236:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:234728-234788:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:251586-251663:1:exon

IDH3B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: IDH3B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X2
translation: MANAALLRASTAGKAVSEAWARLGSRGLLTSAALQHSGDVIKPEGHYKVTVIPGDGVGPELMNSVREVFKAAAVPVELEEHHLSEVQDQASGDRLNEVVKSLDLTRVALKGKLYTPMEHKGDLASYEMKLRRRLDLFANVVRCKSLPGFTTRHNNLDLVVIREQTEGEYSSLEHESVPGVVESLKIITRDRSRRIAKFAFDYATKHGRSKVTAVHKANIMKLGDGLFLQCCEEVAALYPLIKYDTIIIDNCCMQLVSNPYQMDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSSEHAVFETGARHPFAQALGRNIANPTAILLSSSNMLRHLHMEYHANMIYDAVRKVIKTGKVRTRDMGGYATTGDFTASVIDHL
SIO_010081: IDH3B
subclass of: SO_0000673
so part of: IDH3B
location: join(187827..187868,193796..193864,195042..195140,200483..200603,210073..210133,214090..214222,219145..219278,220529..220631,221278..221424,227142..227236,234728..234788,241496..241567)
location: region:187827-241567:1
so has part: feature:187827-187868:1:exon
so has part: feature:193796-193864:1:exon
so has part: feature:195042-195140:1:exon
so has part: feature:200483-200603:1:exon
so has part: feature:210073-210133:1:exon
so has part: feature:214090-214222:1:exon
so has part: feature:219145-219278:1:exon
so has part: feature:220529-220631:1:exon
so has part: feature:221278-221424:1:exon
so has part: feature:227142-227236:1:exon
so has part: feature:234728-234788:1:exon
so has part: feature:241496-241567:1:exon

XP_032835915.1
type: Protein
SIO_000068: ncbiprotein

position:241567:1
position: 241567
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:187827-187868:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:193796-193864:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:195042-195140:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:200483-200603:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:210073-210133:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:214090-214222:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:219145-219278:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:220529-220631:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:221278-221424:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:227142-227236:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:234728-234788:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:241496-241567:1:exon

IDH3B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: IDH3B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X3
translation: MANAALLRASTAGKAVSEAWARLGSRGLLTSAALQHSGDVIKPEGHYKVTVIPGDGVGPELMNSVREVFKAAAVPVELEEHHLSEVQDQASGDRLNEVVKSLDLTRVALKGKLYTPMEHKGDLASYEMKLRRRLDLFANVVRCKSLPGFTTRHNNLDLVVIREQTEGEYSSLEHESVPGVVESLKIITRDRSRRIAKFAFDYATKHGRSKVTAVHKANIMKLGDGLFLQCCEEVAALYPLIKYDTIIIDNCCMQLVSNPYQMDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSSEHAVFETGARHPFAQALGRNIANPTAILLSSSNMLRHLQ
SIO_010081: IDH3B
subclass of: SO_0000673
so part of: IDH3B
location: join(187827..187868,193796..193864,195042..195140,200483..200603,210073..210133,214090..214222,219145..219278,220529..220631,221278..221424,227142..227165,227330..227404)
location: region:187827-227404:1
so has part: feature:187827-187868:1:exon
so has part: feature:193796-193864:1:exon
so has part: feature:195042-195140:1:exon
so has part: feature:200483-200603:1:exon
so has part: feature:210073-210133:1:exon
so has part: feature:214090-214222:1:exon
so has part: feature:219145-219278:1:exon
so has part: feature:220529-220631:1:exon
so has part: feature:221278-221424:1:exon
so has part: feature:227142-227165:1:exon
so has part: feature:227330-227404:1:exon

XP_032835916.1
type: Protein
SIO_000068: ncbiprotein

position:227404:1
position: 227404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:187827-187868:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:193796-193864:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:195042-195140:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:200483-200603:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:210073-210133:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:214090-214222:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:219145-219278:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:220529-220631:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:221278-221424:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:227142-227165:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:227330-227404:1:exon

LOC116957717
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: LOC116957717
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 264205..351585
location: region:264205-351585:1
so has part: feature:264205-351585:1:exon
subclass of: SO_0000010

116957717
type: Gene
SIO_000068: ncbigene

position:264205:1
position: 264205
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:351585:1
position: 351585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:264205-351585:1:exon

LOC116957717
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: LOC116957717
product: inactive carboxypeptidase-like protein X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 19 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_032980038.1
SIO_010081: LOC116957717
subclass of: SO_0000673
so part of: LOC116957717
location: join(264205..265261,268284..268337,279640..279749,287898..288037,294605..294689,296712..296871,297247..297335,298734..298857,304651..304847,315680..315859,319776..319934,322463..322601,332637..332776,340565..340664,343200..343294,348697..351585)
location: region:264205-351585:1
so has part: feature:264205-265261:1:exon
so has part: feature:268284-268337:1:exon
so has part: feature:279640-279749:1:exon
so has part: feature:287898-288037:1:exon
so has part: feature:294605-294689:1:exon
so has part: feature:296712-296871:1:exon
so has part: feature:297247-297335:1:exon
so has part: feature:298734-298857:1:exon
so has part: feature:304651-304847:1:exon
so has part: feature:315680-315859:1:exon
so has part: feature:319776-319934:1:exon
so has part: feature:322463-322601:1:exon
so has part: feature:332637-332776:1:exon
so has part: feature:340565-340664:1:exon
so has part: feature:343200-343294:1:exon
so has part: feature:348697-351585:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:264205-265261:1:exon

position:265261:1
position: 265261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:268284-268337:1:exon

position:268284:1
position: 268284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:268337:1
position: 268337
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:279640-279749:1:exon

position:279640:1
position: 279640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:279749:1
position: 279749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:287898-288037:1:exon

position:287898:1
position: 287898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:288037:1
position: 288037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:294605-294689:1:exon

position:294605:1
position: 294605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:294689:1
position: 294689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:296712-296871:1:exon

position:296712:1
position: 296712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:296871:1
position: 296871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:297247-297335:1:exon

position:297247:1
position: 297247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:297335:1
position: 297335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:298734-298857:1:exon

position:298734:1
position: 298734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:298857:1
position: 298857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:304651-304847:1:exon

position:304651:1
position: 304651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:304847:1
position: 304847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:315680-315859:1:exon

position:315680:1
position: 315680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:315859:1
position: 315859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:319776-319934:1:exon

position:319776:1
position: 319776
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:319934:1
position: 319934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:322463-322601:1:exon

position:322463:1
position: 322463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:322601:1
position: 322601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:332637-332776:1:exon

position:332637:1
position: 332637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:332776:1
position: 332776
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:340565-340664:1:exon

position:340565:1
position: 340565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:340664:1
position: 340664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:343200-343294:1:exon

position:343200:1
position: 343200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:343294:1
position: 343294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:348697-351585:1:exon

position:348697:1
position: 348697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116957717
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: LOC116957717
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: inactive carboxypeptidase-like protein X2
translation: MKKAATKMKTVAGARKPPKKSVGGGGGGGGGVGKKAEAVVAEEAEVEVEAVEAEEVEAEEVVESLRVKTAKPTKPTKPKPSPQRAGAAGDTKAAAAAAGGVKKPPKKAEAVVAAEEEAVEEAVEAEEVVESLRAKTAKPTKPKPSPQRAGAAGDTKAAAAAAAGGVKKPPKKAEAVVAEEEEAVEEAVEAVEEERRRETAGGKKATKTKTTKAAAAAGKPPKKSVGAGGKGTAGGGGVGKKGKEEEEEEVDEVDEVEEVEERRREKATKTKTTKAAAAAGKAPKKSVAAGVKGTAGGGGGGVGKKGKEEEEVDEVDEVDEVEVVDEEEEEEEEGRKGRGGGAKGKATKDKKKGNKQTGDFTHNGKIRKGQKCPSLGVESMRVSDHQLHASSSSRYGLGAHRGRLNIQSGMTDDDQYDGAWCAGVMDEAQWLEVDARRLTQFTGVITQGRQSLTAQDWVTSFVVLYSNDTHSWETYQEGGQEMVFQANVDPETPLWNELLYPVVSRYLRINPRTWHRQAEGGLICLRVELMGCPLEDPNNYYHGRNEATTSDDLDFRHHNYKDMRQLMKMVNEECPHITRIYNIGKTNESRKIYAMEISDNPGEHELGEPEFRYVAGLHGNEALGQELLLLLMQFLCREYVQGNARVRRLVDETRIHLLPSINPDGHEKALQAGSELSGWSLGRWTNDGIDINHNFPDLNSVLWESMERESGAQRVPNHHIPVPEWYYQPEARVASETRALILWMEKFDFVLSGNLHGGELVATFPYDMARSFWKAREFSPTPDEQVFRWLAFAFASTHRTMAVSGRRVCHSDDFTKEGSVVNGAAWHTVAGSMADFSYLHTNCLEVTMELGCDKFPHETELPHEWENSREALMVYMEQVHRGIKGVVLDPDGVGVPNAVVGVEEIDHDVTTGSMGDYFRLLNPGEYKVTVRAEGFTSVTRTCQVDYDMGASPCDFHLSRSNRRRILEILRRFDRQRLRARGRASGVVFPRPGLGRSGQRPEAGGRGGGGGGGGGGGGRGGGGGGGGGGGGSERRGRFRGVPEEWDGRREGESSEGREGESEGREGESERREPWGEAEEDRNRRREGESERREPWGEAEEDRNRRREGESERREPWGEAEEDRNRRREGESSEGREGESERREPWGEAEEDRNRRREGESSEGREGESERREPWGEAEEDRNRRREGESERREGWGGEEEDRDSP
SIO_010081: LOC116957717
subclass of: SO_0000673
so part of: LOC116957717
location: join(264205..265261,268284..268337,279640..279749,287898..288037,294605..294689,296712..296871,297247..297335,298734..298857,304651..304847,315680..315859,319776..319934,322463..322601,332637..332776,340565..340664,343200..343294,348697..349482)
location: region:264205-349482:1
so has part: feature:264205-265261:1:exon
so has part: feature:268284-268337:1:exon
so has part: feature:279640-279749:1:exon
so has part: feature:287898-288037:1:exon
so has part: feature:294605-294689:1:exon
so has part: feature:296712-296871:1:exon
so has part: feature:297247-297335:1:exon
so has part: feature:298734-298857:1:exon
so has part: feature:304651-304847:1:exon
so has part: feature:315680-315859:1:exon
so has part: feature:319776-319934:1:exon
so has part: feature:322463-322601:1:exon
so has part: feature:332637-332776:1:exon
so has part: feature:340565-340664:1:exon
so has part: feature:343200-343294:1:exon
so has part: feature:348697-349482:1:exon

XP_032835929.1
type: Protein
SIO_000068: ncbiprotein

position:349482:1
position: 349482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:264205-265261:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:268284-268337:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:279640-279749:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:287898-288037:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:294605-294689:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:296712-296871:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:297247-297335:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:298734-298857:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:304651-304847:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:315680-315859:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:319776-319934:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:322463-322601:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:332637-332776:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:340565-340664:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:343200-343294:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:348697-349482:1:exon

LOC116957715
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: LOC116957715
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 361549..431413
location: region:361549-431413:1
so has part: feature:361549-431413:1:exon
subclass of: SO_0000010

116957715
type: Gene
SIO_000068: ncbigene

position:361549:1
position: 361549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:431413:1
position: 431413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:361549-431413:1:exon

LOC116957715
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: LOC116957715
product: STE20-like serine/threonine-protein kinase
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032980035.1
SIO_010081: LOC116957715
subclass of: SO_0000673
so part of: LOC116957715
location: join(361549..361695,365934..366083,367389..367553,370660..370708,378512..378664,382605..382677,384418..384615,385211..385292,385643..385783,386292..386581,390107..390494,391644..391771,395440..395563,396443..396622,411524..411619,415720..415849,420866..420990,421567..421755,426356..426481,428051..428164,431222..431413)
location: region:361549-431413:1
so has part: feature:361549-361695:1:exon
so has part: feature:365934-366083:1:exon
so has part: feature:367389-367553:1:exon
so has part: feature:370660-370708:1:exon
so has part: feature:378512-378664:1:exon
so has part: feature:382605-382677:1:exon
so has part: feature:384418-384615:1:exon
so has part: feature:385211-385292:1:exon
so has part: feature:385643-385783:1:exon
so has part: feature:386292-386581:1:exon
so has part: feature:390107-390494:1:exon
so has part: feature:391644-391771:1:exon
so has part: feature:395440-395563:1:exon
so has part: feature:396443-396622:1:exon
so has part: feature:411524-411619:1:exon
so has part: feature:415720-415849:1:exon
so has part: feature:420866-420990:1:exon
so has part: feature:421567-421755:1:exon
so has part: feature:426356-426481:1:exon
so has part: feature:428051-428164:1:exon
so has part: feature:431222-431413:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:361549-361695:1:exon

position:361695:1
position: 361695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:365934-366083:1:exon

position:365934:1
position: 365934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:366083:1
position: 366083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:367389-367553:1:exon

position:367389:1
position: 367389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:367553:1
position: 367553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:370660-370708:1:exon

position:370660:1
position: 370660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:370708:1
position: 370708
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:378512-378664:1:exon

position:378512:1
position: 378512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:378664:1
position: 378664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:382605-382677:1:exon

position:382605:1
position: 382605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:382677:1
position: 382677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:384418-384615:1:exon

position:384418:1
position: 384418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:384615:1
position: 384615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:385211-385292:1:exon

position:385211:1
position: 385211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:385292:1
position: 385292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:385643-385783:1:exon

position:385643:1
position: 385643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:385783:1
position: 385783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:386292-386581:1:exon

position:386292:1
position: 386292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:386581:1
position: 386581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:390107-390494:1:exon

position:390107:1
position: 390107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:390494:1
position: 390494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:391644-391771:1:exon

position:391644:1
position: 391644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:391771:1
position: 391771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:395440-395563:1:exon

position:395440:1
position: 395440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:395563:1
position: 395563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:396443-396622:1:exon

position:396443:1
position: 396443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:396622:1
position: 396622
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:411524-411619:1:exon

position:411524:1
position: 411524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:411619:1
position: 411619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:415720-415849:1:exon

position:415720:1
position: 415720
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:415849:1
position: 415849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:420866-420990:1:exon

position:420866:1
position: 420866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:420990:1
position: 420990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:421567-421755:1:exon

position:421567:1
position: 421567
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:421755:1
position: 421755
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:426356-426481:1:exon

position:426356:1
position: 426356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:426481:1
position: 426481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:428051-428164:1:exon

position:428051:1
position: 428051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:428164:1
position: 428164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:431222-431413:1:exon

position:431222:1
position: 431222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116957715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: LOC116957715
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: STE20-like serine/threonine-protein kinase
translation: MMNRLLGGRKRTKHPQLRRTENPAESWTTVGELGDGAFGTVYKVQNRQTGQLAAAKVMEPSDEEEMEELLVEVEVLSACRHNHVITLVAAYHCGPKLWILLEFCAGGALDSIMMDVDHGLSEPQIRCVARQVLLALDYLHTVLHVIHRDLKAGNVLLALDGTVKLADFGVSAKNQNTLQKRDTFIGTPYWMAPEVVLCETLKEAPYGCGADIWSLGVTLIEAAETEPPHNDVNPMRVLLRIVRSPPPTLTRSPGLWSGEFHDILRRCLEKNVDQRWTAKQLLQHPFVADATDNRPLLELLAEARAEVTTEVIDDDPQPDDEDEEDDDDDEASGPDTPRSNSPHYRPMEIPRPNITNITNITTIATTATTATNATPTADGADTPMMMMMRSQAGGEAGGSLTGPAAVVMTGMVARNPDEPPLPANKERPSGGAVWSRPRASSPCPPQGCPRRPTRLDDISRRSSSTAPGAAKSSASLPRQLKPDYLARPDSSSSSSSSASSSASSTSSATTGARSLSLGRSSSAAPREGGPPAGGGAAVAVDRPDGGAAPPSAKAGPATKGQKQTMKRTRRYVVDGQEKSVTTVTLVEEEQNGRQMKVVRQQEMRELQRLQKEEKRELGKLLARHLAQQETTQRKSEGEMVAKKKQYEAELETLERTWKQKTERAERDGASCLVVESKRQAGEQEKQLAGFKEKQAMERKQKKADIQRITLKEERKILQKKVMEELDQKQAAQERVFVENQKGTLDALLRQAISTHVERLGQMETDGLQAKQLFRREFERSVLEMVVRQHQEMKQLLKQQLSEQLLLSRQHMDKRHSKEVEQLQRASARLVDEERARQGALSAAAARRGRRSAKANVTRFKDAMRPAAIFHSASDREKLKQFIQAEKDRQRSEREDFQRQQEAQLEALLQQNEQSMAELMQLHRDKSELLRESESCRVQSLEQQQQQLMVEVGERGSFMKQVMENELAQESQELQQKISRELEAAHQHPSIPKRVLAMLLQ
SIO_010081: LOC116957715
subclass of: SO_0000673
so part of: LOC116957715
location: join(365955..366083,367389..367553,370660..370708,378512..378664,382605..382677,384418..384615,385211..385292,385643..385783,386292..386581,390107..390494,391644..391771,395440..395563,396443..396622,411524..411619,415720..415849,420866..420990,421567..421755,426356..426481,428051..428164,431222..431344)
location: region:365955-431344:1
so has part: feature:365955-366083:1:exon
so has part: feature:367389-367553:1:exon
so has part: feature:370660-370708:1:exon
so has part: feature:378512-378664:1:exon
so has part: feature:382605-382677:1:exon
so has part: feature:384418-384615:1:exon
so has part: feature:385211-385292:1:exon
so has part: feature:385643-385783:1:exon
so has part: feature:386292-386581:1:exon
so has part: feature:390107-390494:1:exon
so has part: feature:391644-391771:1:exon
so has part: feature:395440-395563:1:exon
so has part: feature:396443-396622:1:exon
so has part: feature:411524-411619:1:exon
so has part: feature:415720-415849:1:exon
so has part: feature:420866-420990:1:exon
so has part: feature:421567-421755:1:exon
so has part: feature:426356-426481:1:exon
so has part: feature:428051-428164:1:exon
so has part: feature:431222-431344:1:exon

XP_032835926.1
type: Protein
SIO_000068: ncbiprotein

position:365955:1
position: 365955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:431344:1
position: 431344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:365955-366083:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:367389-367553:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:370660-370708:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:378512-378664:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:382605-382677:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:384418-384615:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:385211-385292:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:385643-385783:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:386292-386581:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:390107-390494:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:391644-391771:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:395440-395563:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:396443-396622:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:411524-411619:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:415720-415849:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:420866-420990:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:421567-421755:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:426356-426481:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:428051-428164:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:431222-431344:1:exon

POLN
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: POLN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(438363..528721)
location: region:438363-528721:-1
so has part: feature:438363-528721:-1:exon
subclass of: SO_0000010

116957718
type: Gene
SIO_000068: ncbigene

position:438363:-1
position: 438363
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:528721:-1
position: 528721
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:438363-528721:-1:exon

POLN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: POLN
product: DNA polymerase nu
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 99% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_032980039.1
SIO_010081: POLN
subclass of: SO_0000673
so part of: POLN
location: complement(join(438363..438515,441840..441901,452316..452383,452698..452776,457941..458051,459225..459356,464694..464776,465587..465698,473484..473561,474177..474240,481285..481350,482147..482200,489907..489963,490789..490896,508164..508247,510404..510468,512405..512465,514172..514252,522543..522664,525299..525450,528595..528721))
location: region:438363-528721:-1
so has part: feature:528595-528721:-1:exon
so has part: feature:525299-525450:-1:exon
so has part: feature:522543-522664:-1:exon
so has part: feature:514172-514252:-1:exon
so has part: feature:512405-512465:-1:exon
so has part: feature:510404-510468:-1:exon
so has part: feature:508164-508247:-1:exon
so has part: feature:490789-490896:-1:exon
so has part: feature:489907-489963:-1:exon
so has part: feature:482147-482200:-1:exon
so has part: feature:481285-481350:-1:exon
so has part: feature:474177-474240:-1:exon
so has part: feature:473484-473561:-1:exon
so has part: feature:465587-465698:-1:exon
so has part: feature:464694-464776:-1:exon
so has part: feature:459225-459356:-1:exon
so has part: feature:457941-458051:-1:exon
so has part: feature:452698-452776:-1:exon
so has part: feature:452316-452383:-1:exon
so has part: feature:441840-441901:-1:exon
so has part: feature:438363-438515:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:528595-528721:-1:exon

position:528595:-1
position: 528595
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:525299-525450:-1:exon

position:525299:-1
position: 525299
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:525450:-1
position: 525450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:522543-522664:-1:exon

position:522543:-1
position: 522543
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:522664:-1
position: 522664
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:514172-514252:-1:exon

position:514172:-1
position: 514172
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:514252:-1
position: 514252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:512405-512465:-1:exon

position:512405:-1
position: 512405
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:512465:-1
position: 512465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:510404-510468:-1:exon

position:510404:-1
position: 510404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:510468:-1
position: 510468
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:508164-508247:-1:exon

position:508164:-1
position: 508164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:508247:-1
position: 508247
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:490789-490896:-1:exon

position:490789:-1
position: 490789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:490896:-1
position: 490896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:489907-489963:-1:exon

position:489907:-1
position: 489907
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:489963:-1
position: 489963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:482147-482200:-1:exon

position:482147:-1
position: 482147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:482200:-1
position: 482200
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:481285-481350:-1:exon

position:481285:-1
position: 481285
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:481350:-1
position: 481350
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:474177-474240:-1:exon

position:474177:-1
position: 474177
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:474240:-1
position: 474240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:473484-473561:-1:exon

position:473484:-1
position: 473484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:473561:-1
position: 473561
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:465587-465698:-1:exon

position:465587:-1
position: 465587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:465698:-1
position: 465698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:464694-464776:-1:exon

position:464694:-1
position: 464694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:464776:-1
position: 464776
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:459225-459356:-1:exon

position:459225:-1
position: 459225
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:459356:-1
position: 459356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:457941-458051:-1:exon

position:457941:-1
position: 457941
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:458051:-1
position: 458051
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:452698-452776:-1:exon

position:452698:-1
position: 452698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:452776:-1
position: 452776
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:452316-452383:-1:exon

position:452316:-1
position: 452316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:452383:-1
position: 452383
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:441840-441901:-1:exon

position:441840:-1
position: 441840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:441901:-1
position: 441901
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:438363-438515:-1:exon

position:438515:-1
position: 438515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

POLN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: POLN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: DNA polymerase nu
translation: MEESTHAFVGSLLSTALRHRNVWCVKSQELIKTAIFHQQHHHHQHHQQHQHQQPTLAWTNAEGWRPLDPGVATWLLDPTLTAPSAGDILQLHLGPLTLAVKCSLKVNRVPVVLSLLPSLGRNLRQKLQRQGLWKVFRDIEMRLTPVLAAMELHEFRMDVPLLQKNSHQLALKLKQLEERAHLEAGERFLLSSSLQLREVLFSKLRLHECSSSSSNRVQLQRTAITQQHSTSEAVLMELQDLHPLPRTVLQYRQVHKMKSTYLDGLLNFVRNGRLTTSWEQTAAVSGRLACKKPNMQAIPKQPFVISDLSDPFIIGKVTDQITMLARAPFKSADGFSFLSADFSQVELRLLAHLSGDAELLRLLSEPGPDVFLTLTAQWLGKEVDEVTEEEREMGKRTVYSIIYGVGKERLSKTLGASPRHSRSLISAFLRRHPAITAFTQRAVTHCQRHGFVMSVMGRKRWLPNISSPDFRLRSNAQRQACNFMVQGSAADICKMSMIRIFTELGQRPSLRAKLVAQLHDELLFEVKDDQVEVLRDLVKSNMESLQHLDSFGLHLKVPLKVSISCGKSWGHLTAVTSTPPPPLVAADDAQTQRSRSTTTTTTPRSC
SIO_010081: POLN
subclass of: SO_0000673
so part of: POLN
location: complement(join(438363..438515,441840..441901,452316..452383,452698..452776,457941..458051,459225..459356,464694..464776,465587..465698,473484..473561,474177..474240,481285..481350,482147..482200,489907..489963,490789..490896,508164..508247,510404..510468,512405..512465,514172..514252,522543..522664,525299..525450,528595..528623))
location: region:438363-528623:-1
so has part: feature:528595-528623:-1:exon
so has part: feature:525299-525450:-1:exon
so has part: feature:522543-522664:-1:exon
so has part: feature:514172-514252:-1:exon
so has part: feature:512405-512465:-1:exon
so has part: feature:510404-510468:-1:exon
so has part: feature:508164-508247:-1:exon
so has part: feature:490789-490896:-1:exon
so has part: feature:489907-489963:-1:exon
so has part: feature:482147-482200:-1:exon
so has part: feature:481285-481350:-1:exon
so has part: feature:474177-474240:-1:exon
so has part: feature:473484-473561:-1:exon
so has part: feature:465587-465698:-1:exon
so has part: feature:464694-464776:-1:exon
so has part: feature:459225-459356:-1:exon
so has part: feature:457941-458051:-1:exon
so has part: feature:452698-452776:-1:exon
so has part: feature:452316-452383:-1:exon
so has part: feature:441840-441901:-1:exon
so has part: feature:438363-438515:-1:exon

XP_032835930.1
type: Protein
SIO_000068: ncbiprotein

position:528623:-1
position: 528623
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:528595-528623:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:525299-525450:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:522543-522664:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:514172-514252:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:512405-512465:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:510404-510468:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:508164-508247:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:490789-490896:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:489907-489963:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:482147-482200:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:481285-481350:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:474177-474240:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:473484-473561:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:465587-465698:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:464694-464776:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:459225-459356:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:457941-458051:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:452698-452776:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:452316-452383:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:441840-441901:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:438363-438515:-1:exon

LOC116957713
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: LOC116957713
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(537865..544576)
location: region:537865-544576:-1
so has part: feature:537865-544576:-1:exon
subclass of: SO_0000011

116957713
type: Gene
SIO_000068: ncbigene

position:537865:-1
position: 537865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:544576:-1
position: 544576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:537865-544576:-1:exon

LOC116957713
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 7757
nc RNA class: lncRNA
gene: LOC116957713
product: uncharacterized LOC116957713
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XR_004405233.1
SIO_010081: LOC116957713
subclass of: SO_0000673
so part of: LOC116957713
location: complement(join(537865..537944,541710..541798,544417..544576))
location: region:537865-544576:-1
so has part: feature:544417-544576:-1:exon
so has part: feature:541710-541798:-1:exon
so has part: feature:537865-537944:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:544417-544576:-1:exon

position:544417:-1
position: 544417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:541710-541798:-1:exon

position:541710:-1
position: 541710
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:541798:-1
position: 541798
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:537865-537944:-1:exon

position:537944:-1
position: 537944
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116957719
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: LOC116957719
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(552753..562805)
location: region:552753-562805:-1
so has part: feature:552753-562805:-1:exon
subclass of: SO_0000010

116957719
type: Gene
SIO_000068: ncbigene

position:552753:-1
position: 552753
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:562805:-1
position: 562805
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:552753-562805:-1:exon

LOC116957719
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: LOC116957719
product: uncharacterized LOC116957719
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 61% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032980040.1
SIO_010081: LOC116957719
subclass of: SO_0000673
so part of: LOC116957719
location: complement(join(552753..552944,557570..557752,558697..558924,561458..561646,562582..562805))
location: region:552753-562805:-1
so has part: feature:562582-562805:-1:exon
so has part: feature:561458-561646:-1:exon
so has part: feature:558697-558924:-1:exon
so has part: feature:557570-557752:-1:exon
so has part: feature:552753-552944:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:562582-562805:-1:exon

position:562582:-1
position: 562582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:561458-561646:-1:exon

position:561458:-1
position: 561458
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:561646:-1
position: 561646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:558697-558924:-1:exon

position:558697:-1
position: 558697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:558924:-1
position: 558924
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:557570-557752:-1:exon

position:557570:-1
position: 557570
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:557752:-1
position: 557752
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:552753-552944:-1:exon

position:552944:-1
position: 552944
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116957719
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: LOC116957719
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC116957719
translation: MAALDWARSGLRRLEASDHVPPKEEALRSQLVAALGAIAELSGECRRLEAVELPRSLRRLSPAQALPAAMALLRLSLAQHRQLESKQELVSELLAQQLARLELLRACYEVERQRVAQLAALLGGLVHGGPARCGLRAEREARRRGRRRRGGRCGAWEELERGARELEARVAELHQGLAEVSQRRLREVARAEARVLGLYRELYGEDVEGGGTGPQLTPPVLAEEMRRLEEGLQLLNSEVLQVMDQRHLHQQQLAASPAMRRQRDLYSRFLLRPMGEGEKAED
SIO_010081: LOC116957719
subclass of: SO_0000673
so part of: LOC116957719
location: complement(join(552753..552944,557570..557752,558697..558924,561458..561646,562582..562638))
location: region:552753-562638:-1
so has part: feature:562582-562638:-1:exon
so has part: feature:561458-561646:-1:exon
so has part: feature:558697-558924:-1:exon
so has part: feature:557570-557752:-1:exon
so has part: feature:552753-552944:-1:exon

XP_032835931.1
type: Protein
SIO_000068: ncbiprotein

position:562638:-1
position: 562638
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:562582-562638:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:561458-561646:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:558697-558924:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:557570-557752:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:552753-552944:-1:exon

TEX261
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: TEX261
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 584497..594859
location: region:584497-594859:1
so has part: feature:584497-594859:1:exon
subclass of: SO_0000010

116957711
type: Gene
SIO_000068: ncbigene

position:584497:1
position: 584497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:594859:1
position: 594859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:584497-594859:1:exon

TEX261
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: TEX261
product: testis expressed 261
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 67 samples with support for all annotated introns
transcript id: XM_032980029.1
SIO_010081: TEX261
subclass of: SO_0000673
so part of: TEX261
location: join(584497..584723,587897..587976,588648..588801,591128..591195,592976..593078,594622..594859)
location: region:584497-594859:1
so has part: feature:584497-584723:1:exon
so has part: feature:587897-587976:1:exon
so has part: feature:588648-588801:1:exon
so has part: feature:591128-591195:1:exon
so has part: feature:592976-593078:1:exon
so has part: feature:594622-594859:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:584497-584723:1:exon

position:584723:1
position: 584723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:587897-587976:1:exon

position:587897:1
position: 587897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:587976:1
position: 587976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:588648-588801:1:exon

position:588648:1
position: 588648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:588801:1
position: 588801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:591128-591195:1:exon

position:591128:1
position: 591128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:591195:1
position: 591195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:592976-593078:1:exon

position:592976:1
position: 592976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:593078:1
position: 593078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:594622-594859:1:exon

position:594622:1
position: 594622
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TEX261
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: TEX261
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein TEX261
translation: MWFIYLLSWLSILLQISFVTLAIAAGLYYLAELIEEYTVVTSKIIKYMIWLSTCVYVGLLIFESFPLILVSLGLFSSVVHLGLLRTFPYIQLTSPNFVLTCLLVAVNHYVGFQHFAEQHYPFTEVLAYFTLCLWLVPFAFFVSLSAGDNVLPCTIAQSENDVVSNYFTKGKKSRRSGILTLFGVLKESVLPPARQKIY
SIO_010081: TEX261
subclass of: SO_0000673
so part of: TEX261
location: join(584654..584723,587897..587976,588648..588801,591128..591195,592976..593078,594622..594743)
location: region:584654-594743:1
so has part: feature:584654-584723:1:exon
so has part: feature:587897-587976:1:exon
so has part: feature:588648-588801:1:exon
so has part: feature:591128-591195:1:exon
so has part: feature:592976-593078:1:exon
so has part: feature:594622-594743:1:exon

XP_032835920.1
type: Protein
SIO_000068: ncbiprotein

position:584654:1
position: 584654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:594743:1
position: 594743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:584654-584723:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:587897-587976:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:588648-588801:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:591128-591195:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:592976-593078:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:594622-594743:1:exon

UBLCP1
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: UBLCP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 618836..677891
location: region:618836-677891:1
so has part: feature:618836-677891:1:exon
subclass of: SO_0000010

116957712
type: Gene
SIO_000068: ncbigene

position:618836:1
position: 618836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:677891:1
position: 677891
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:618836-677891:1:exon

UBLCP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: UBLCP1
product: ubiquitin like domain containing CTD phosphatase 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_032980033.1
SIO_010081: UBLCP1
subclass of: SO_0000673
so part of: UBLCP1
location: join(618836..619056,622246..622412,624885..624976,627860..627954,635889..636004,640485..640583,648346..648383,652318..652416,669961..670077,676557..676694)
location: region:618836-676694:1
so has part: feature:618836-619056:1:exon
so has part: feature:622246-622412:1:exon
so has part: feature:624885-624976:1:exon
so has part: feature:627860-627954:1:exon
so has part: feature:635889-636004:1:exon
so has part: feature:640485-640583:1:exon
so has part: feature:648346-648383:1:exon
so has part: feature:652318-652416:1:exon
so has part: feature:669961-670077:1:exon
so has part: feature:676557-676694:1:exon

position:676694:1
position: 676694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:618836-619056:1:exon

position:619056:1
position: 619056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:622246-622412:1:exon

position:622246:1
position: 622246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:622412:1
position: 622412
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:624885-624976:1:exon

position:624885:1
position: 624885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:624976:1
position: 624976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:627860-627954:1:exon

position:627860:1
position: 627860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:627954:1
position: 627954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:635889-636004:1:exon

position:635889:1
position: 635889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:636004:1
position: 636004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:640485-640583:1:exon

position:640485:1
position: 640485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:640583:1
position: 640583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:648346-648383:1:exon

position:648346:1
position: 648346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:648383:1
position: 648383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:652318-652416:1:exon

position:652318:1
position: 652318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:652416:1
position: 652416
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:669961-670077:1:exon

position:669961:1
position: 669961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:670077:1
position: 670077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:676557-676694:1:exon

position:676557:1
position: 676557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

UBLCP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: UBLCP1
product: ubiquitin like domain containing CTD phosphatase 1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_032980034.1
SIO_010081: UBLCP1
subclass of: SO_0000673
so part of: UBLCP1
location: join(618838..619056,622246..622412,624885..624976,627860..627954,635889..636004,640485..640583,648346..648383,652318..652416,669961..670077,676165..676299)
location: region:618838-676299:1
so has part: feature:618838-619056:1:exon
so has part: feature:622246-622412:1:exon
so has part: feature:624885-624976:1:exon
so has part: feature:627860-627954:1:exon
so has part: feature:635889-636004:1:exon
so has part: feature:640485-640583:1:exon
so has part: feature:648346-648383:1:exon
so has part: feature:652318-652416:1:exon
so has part: feature:669961-670077:1:exon
so has part: feature:676165-676299:1:exon

position:618838:1
position: 618838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:676299:1
position: 676299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:618838-619056:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:622246-622412:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:624885-624976:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:627860-627954:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:635889-636004:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:640485-640583:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:648346-648383:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:652318-652416:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:669961-670077:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:676165-676299:1:exon

position:676165:1
position: 676165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

UBLCP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: UBLCP1
product: ubiquitin like domain containing CTD phosphatase 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_032980032.1
SIO_010081: UBLCP1
subclass of: SO_0000673
so part of: UBLCP1
location: join(618839..619074,622246..622412,624885..624976,627860..627954,635889..636004,640485..640583,648346..648383,652318..652416,669961..670077,676701..676828,677719..677891)
location: region:618839-677891:1
so has part: feature:618839-619074:1:exon
so has part: feature:622246-622412:1:exon
so has part: feature:624885-624976:1:exon
so has part: feature:627860-627954:1:exon
so has part: feature:635889-636004:1:exon
so has part: feature:640485-640583:1:exon
so has part: feature:648346-648383:1:exon
so has part: feature:652318-652416:1:exon
so has part: feature:669961-670077:1:exon
so has part: feature:676701-676828:1:exon
so has part: feature:677719-677891:1:exon

position:618839:1
position: 618839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:618839-619074:1:exon

position:619074:1
position: 619074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:622246-622412:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:624885-624976:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:627860-627954:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:635889-636004:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:640485-640583:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:648346-648383:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:652318-652416:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:669961-670077:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:676701-676828:1:exon

position:676701:1
position: 676701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:676828:1
position: 676828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:677719-677891:1:exon

position:677719:1
position: 677719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

UBLCP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: UBLCP1
product: ubiquitin like domain containing CTD phosphatase 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_032980030.1
SIO_010081: UBLCP1
subclass of: SO_0000673
so part of: UBLCP1
location: join(618841..619056,622246..622412,624885..624976,627860..627954,635889..636004,640485..640583,648346..648383,652318..652416,669961..670077,676701..676828,677719..677890)
location: region:618841-677890:1
so has part: feature:618841-619056:1:exon
so has part: feature:622246-622412:1:exon
so has part: feature:624885-624976:1:exon
so has part: feature:627860-627954:1:exon
so has part: feature:635889-636004:1:exon
so has part: feature:640485-640583:1:exon
so has part: feature:648346-648383:1:exon
so has part: feature:652318-652416:1:exon
so has part: feature:669961-670077:1:exon
so has part: feature:676701-676828:1:exon
so has part: feature:677719-677890:1:exon

position:618841:1
position: 618841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:677890:1
position: 677890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:618841-619056:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:622246-622412:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:624885-624976:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:627860-627954:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:635889-636004:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:640485-640583:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:648346-648383:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:652318-652416:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:669961-670077:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:676701-676828:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:677719-677890:1:exon

UBLCP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: UBLCP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin-like domain-containing CTD phosphatase 1 isoform X1
translation: MSALPLTVRWAGQEISVPAFPSDATVRCLKRALQELTGVRIHRQKLLGLRVRGQPAGDDVVLASLRLKPHAKIMLVGSREETLEEVLAVPCGGGGGEVVNDFDIEEEEEVELECREENVRKVVRRVRHYHLSLMQPPRPNKKLLVLDVDYTLFDHKSCAESGQELMRPFLHEFLTDAYTHYDIAIWSATSMKWIEAKMKELGVTTHHSYKVSFMLDSAAMITVFTPKYGVVEVKPLGVIWGKFPDVYGPGNTIMLDDIRRNFLMNPQNGLKIKPFMKAHVTRETDRELVKLSKYLLKIAQLDDFTSLNHKHWERYCAKEEEEQNE
SIO_010081: UBLCP1
subclass of: SO_0000673
so part of: UBLCP1
location: join(622256..622412,624885..624976,627860..627954,635889..636004,640485..640583,648346..648383,652318..652416,669961..670077,676701..676828,677719..677755)
location: region:622256-677755:1
so has part: feature:622256-622412:1:exon
so has part: feature:624885-624976:1:exon
so has part: feature:627860-627954:1:exon
so has part: feature:635889-636004:1:exon
so has part: feature:640485-640583:1:exon
so has part: feature:648346-648383:1:exon
so has part: feature:652318-652416:1:exon
so has part: feature:669961-670077:1:exon
so has part: feature:676701-676828:1:exon
so has part: feature:677719-677755:1:exon

XP_032835921.1
type: Protein
SIO_000068: ncbiprotein

position:622256:1
position: 622256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:677755:1
position: 677755
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:622256-622412:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:624885-624976:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:627860-627954:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:635889-636004:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:640485-640583:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:648346-648383:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:652318-652416:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:669961-670077:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:676701-676828:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:677719-677755:1:exon

UBLCP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: UBLCP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin-like domain-containing CTD phosphatase 1 isoform X1
translation: MSALPLTVRWAGQEISVPAFPSDATVRCLKRALQELTGVRIHRQKLLGLRVRGQPAGDDVVLASLRLKPHAKIMLVGSREETLEEVLAVPCGGGGGEVVNDFDIEEEEEVELECREENVRKVVRRVRHYHLSLMQPPRPNKKLLVLDVDYTLFDHKSCAESGQELMRPFLHEFLTDAYTHYDIAIWSATSMKWIEAKMKELGVTTHHSYKVSFMLDSAAMITVFTPKYGVVEVKPLGVIWGKFPDVYGPGNTIMLDDIRRNFLMNPQNGLKIKPFMKAHVTRETDRELVKLSKYLLKIAQLDDFTSLNHKHWERYCAKEEEEQNE
SIO_010081: UBLCP1
subclass of: SO_0000673
so part of: UBLCP1
location: join(622256..622412,624885..624976,627860..627954,635889..636004,640485..640583,648346..648383,652318..652416,669961..670077,676701..676828,677719..677755)
location: region:622256-677755:1
so has part: feature:622256-622412:1:exon
so has part: feature:624885-624976:1:exon
so has part: feature:627860-627954:1:exon
so has part: feature:635889-636004:1:exon
so has part: feature:640485-640583:1:exon
so has part: feature:648346-648383:1:exon
so has part: feature:652318-652416:1:exon
so has part: feature:669961-670077:1:exon
so has part: feature:676701-676828:1:exon
so has part: feature:677719-677755:1:exon

XP_032835923.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:622256-622412:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:624885-624976:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:627860-627954:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:635889-636004:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:640485-640583:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:648346-648383:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:652318-652416:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:669961-670077:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:676701-676828:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:677719-677755:1:exon

UBLCP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: UBLCP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin-like domain-containing CTD phosphatase 1 isoform X2
translation: MSALPLTVRWAGQEISVPAFPSDATVRCLKRALQELTGVRIHRQKLLGLRVRGQPAGDDVVLASLRLKPHAKIMLVGSREETLEEVLAVPCGGGGGEVVNDFDIEEEEEVELECREENVRKVVRRVRHYHLSLMQPPRPNKKLLVLDVDYTLFDHKSCAESGQELMRPFLHEFLTDAYTHYDIAIWSATSMKWIEAKMKELGVTTHHSYKVSFMLDSAAMITVFTPKYGVVEVKPLGVIWGKFPDVYGPGNTIMLDDIRRNFLMNPQNGLKIKPFMKAHVTRESDRELVKLSKYLLCVCVTVCDCV
SIO_010081: UBLCP1
subclass of: SO_0000673
so part of: UBLCP1
location: join(622256..622412,624885..624976,627860..627954,635889..636004,640485..640583,648346..648383,652318..652416,669961..670077,676557..676664)
location: region:622256-676664:1
so has part: feature:622256-622412:1:exon
so has part: feature:624885-624976:1:exon
so has part: feature:627860-627954:1:exon
so has part: feature:635889-636004:1:exon
so has part: feature:640485-640583:1:exon
so has part: feature:648346-648383:1:exon
so has part: feature:652318-652416:1:exon
so has part: feature:669961-670077:1:exon
so has part: feature:676557-676664:1:exon

XP_032835924.1
type: Protein
SIO_000068: ncbiprotein

position:676664:1
position: 676664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:622256-622412:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:624885-624976:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:627860-627954:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:635889-636004:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:640485-640583:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:648346-648383:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:652318-652416:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:669961-670077:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:676557-676664:1:exon

UBLCP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: UBLCP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin-like domain-containing CTD phosphatase 1 isoform X3
translation: MSALPLTVRWAGQEISVPAFPSDATVRCLKRALQELTGVRIHRQKLLGLRVRGQPAGDDVVLASLRLKPHAKIMLVGSREETLEEVLAVPCGGGGGEVVNDFDIEEEEEVELECREENVRKVVRRVRHYHLSLMQPPRPNKKLLVLDVDYTLFDHKSCAESGQELMRPFLHEFLTDAYTHYDIAIWSATSMKWIEAKMKELGVTTHHSYKVSFMLDSAAMITVFTPKYGVVEVKPLGVIWGKFPDVYGPGNTIMLDDIRRNFLMNPQNGLKIKPFMKAHVTRESDRELVKLSKYLLCVCVTVCV
SIO_010081: UBLCP1
subclass of: SO_0000673
so part of: UBLCP1
location: join(622256..622412,624885..624976,627860..627954,635889..636004,640485..640583,648346..648383,652318..652416,669961..670077,676165..676266)
location: region:622256-676266:1
so has part: feature:622256-622412:1:exon
so has part: feature:624885-624976:1:exon
so has part: feature:627860-627954:1:exon
so has part: feature:635889-636004:1:exon
so has part: feature:640485-640583:1:exon
so has part: feature:648346-648383:1:exon
so has part: feature:652318-652416:1:exon
so has part: feature:669961-670077:1:exon
so has part: feature:676165-676266:1:exon

XP_032835925.1
type: Protein
SIO_000068: ncbiprotein

position:676266:1
position: 676266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:622256-622412:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:624885-624976:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:627860-627954:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:635889-636004:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:640485-640583:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:648346-648383:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:652318-652416:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:669961-670077:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:676165-676266:1:exon

BCCIP
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: BCCIP
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(683729..699413)
location: region:683729-699413:-1
so has part: feature:683729-699413:-1:exon
subclass of: SO_0000010

116957722
type: Gene
SIO_000068: ncbigene

position:683729:-1
position: 683729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:699413:-1
position: 699413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:683729-699413:-1:exon

BCCIP
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: BCCIP
product: BRCA2 and CDKN1A interacting protein
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 61 samples with support for all annotated introns
transcript id: XM_032980045.1
SIO_010081: BCCIP
subclass of: SO_0000673
so part of: BCCIP
location: complement(join(683729..684286,689073..689457,691147..691331,694865..694957,696435..696515,697945..698019,699143..699413))
location: region:683729-699413:-1
so has part: feature:699143-699413:-1:exon
so has part: feature:697945-698019:-1:exon
so has part: feature:696435-696515:-1:exon
so has part: feature:694865-694957:-1:exon
so has part: feature:691147-691331:-1:exon
so has part: feature:689073-689457:-1:exon
so has part: feature:683729-684286:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:699143-699413:-1:exon

position:699143:-1
position: 699143
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:697945-698019:-1:exon

position:697945:-1
position: 697945
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:698019:-1
position: 698019
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:696435-696515:-1:exon

position:696435:-1
position: 696435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:696515:-1
position: 696515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:694865-694957:-1:exon

position:694865:-1
position: 694865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:694957:-1
position: 694957
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:691147-691331:-1:exon

position:691147:-1
position: 691147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:691331:-1
position: 691331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:689073-689457:-1:exon

position:689073:-1
position: 689073
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:689457:-1
position: 689457
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:683729-684286:-1:exon

position:684286:-1
position: 684286
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

BCCIP
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: BCCIP
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: BRCA2 and CDKN1A-interacting protein
translation: MASAPKRIHRSPDEHDDDDDDEEEEEEERDEDDCDDDDCSGSGSDDIDEEVMVEFEAHAFTHSDFYGVRKLLQQLFRKTVVDVTALANLIVNNPDLGSVLKQAPVSDDSDDDDESQDEVFGFITLISLSDKQLAPCLSQLCSVLVSLAHAADPTTAAGLRAALANKARPVGLLLCERFLNVPPHVALPLHSQLGKELVSLDRTKRLAGGGGCGTTTATTTTTTTTTTTTTTTTTMPSQAAGGFSYYLLVCKTCVEGGGGAVGVGATRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGEQKGELMFLNAEEEFFYEQAELTFSYPVGASAGSVDEPGVTGVTGVTGVTGVTGVDSLLGGRWSPGDLQMESLRSVLLVPTARLGHVTTAMHQHLATPQ
SIO_010081: BCCIP
subclass of: SO_0000673
so part of: BCCIP
location: complement(join(684041..684286,689073..689457,691147..691331,694865..694957,696435..696515,697945..698019,699143..699289))
location: region:684041-699289:-1
so has part: feature:699143-699289:-1:exon
so has part: feature:697945-698019:-1:exon
so has part: feature:696435-696515:-1:exon
so has part: feature:694865-694957:-1:exon
so has part: feature:691147-691331:-1:exon
so has part: feature:689073-689457:-1:exon
so has part: feature:684041-684286:-1:exon

XP_032835936.1
type: Protein
SIO_000068: ncbiprotein

position:684041:-1
position: 684041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:699289:-1
position: 699289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:699143-699289:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:697945-698019:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:696435-696515:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:694865-694957:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:691147-691331:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:689073-689457:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:684041-684286:-1:exon

LOC116957714
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: LOC116957714
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 701716..722593
location: region:701716-722593:1
so has part: feature:701716-722593:1:exon
subclass of: SO_0000011

116957714
type: Gene
SIO_000068: ncbigene

position:701716:1
position: 701716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:722593:1
position: 722593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:701716-722593:1:exon

LOC116957714
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 7757
nc RNA class: lncRNA
gene: LOC116957714
product: uncharacterized LOC116957714, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_004405237.1
SIO_010081: LOC116957714
subclass of: SO_0000673
so part of: LOC116957714
location: join(701716..701754,712981..713046,716253..716336,717140..717226,722455..722593)
location: region:701716-722593:1
so has part: feature:701716-701754:1:exon
so has part: feature:712981-713046:1:exon
so has part: feature:716253-716336:1:exon
so has part: feature:717140-717226:1:exon
so has part: feature:722455-722593:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:701716-701754:1:exon

position:701754:1
position: 701754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:712981-713046:1:exon

position:712981:1
position: 712981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:713046:1
position: 713046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:716253-716336:1:exon

position:716253:1
position: 716253
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:716336:1
position: 716336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:717140-717226:1:exon

position:717140:1
position: 717140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:717226:1
position: 717226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:722455-722593:1:exon

position:722455:1
position: 722455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116957714
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 7757
nc RNA class: lncRNA
gene: LOC116957714
product: uncharacterized LOC116957714, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
transcript id: XR_004405235.1
SIO_010081: LOC116957714
subclass of: SO_0000673
so part of: LOC116957714
location: join(702183..702337,712981..713046,716253..716336,717140..717241,722455..722593)
location: region:702183-722593:1
so has part: feature:702183-702337:1:exon
so has part: feature:712981-713046:1:exon
so has part: feature:716253-716336:1:exon
so has part: feature:717140-717241:1:exon
so has part: feature:722455-722593:1:exon

position:702183:1
position: 702183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:702183-702337:1:exon

position:702337:1
position: 702337
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:712981-713046:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:716253-716336:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:717140-717241:1:exon

position:717241:1
position: 717241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:722455-722593:1:exon

LOC116957714
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 7757
nc RNA class: lncRNA
gene: LOC116957714
product: uncharacterized LOC116957714, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
transcript id: XR_004405234.1
SIO_010081: LOC116957714
subclass of: SO_0000673
so part of: LOC116957714
location: join(702188..702337,712981..713046,716253..716336,717140..717226,722455..722593)
location: region:702188-722593:1
so has part: feature:702188-702337:1:exon
so has part: feature:712981-713046:1:exon
so has part: feature:716253-716336:1:exon
so has part: feature:717140-717226:1:exon
so has part: feature:722455-722593:1:exon

position:702188:1
position: 702188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:702188-702337:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:712981-713046:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:716253-716336:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:717140-717226:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:722455-722593:1:exon

LOC116957714
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 7757
nc RNA class: lncRNA
gene: LOC116957714
product: uncharacterized LOC116957714, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
transcript id: XR_004405236.1
SIO_010081: LOC116957714
subclass of: SO_0000673
so part of: LOC116957714
location: join(706045..706084,712981..713046,716253..716336,717140..717226,722455..722593)
location: region:706045-722593:1
so has part: feature:706045-706084:1:exon
so has part: feature:712981-713046:1:exon
so has part: feature:716253-716336:1:exon
so has part: feature:717140-717226:1:exon
so has part: feature:722455-722593:1:exon

position:706045:1
position: 706045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:706045-706084:1:exon

position:706084:1
position: 706084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:712981-713046:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:716253-716336:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:717140-717226:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:722455-722593:1:exon

LOC116957714
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 7757
nc RNA class: lncRNA
gene: LOC116957714
product: uncharacterized LOC116957714, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XR_004405238.1
SIO_010081: LOC116957714
subclass of: SO_0000673
so part of: LOC116957714
location: join(709939..709979,712981..713046,716253..716336,717140..717226,722455..722593)
location: region:709939-722593:1
so has part: feature:709939-709979:1:exon
so has part: feature:712981-713046:1:exon
so has part: feature:716253-716336:1:exon
so has part: feature:717140-717226:1:exon
so has part: feature:722455-722593:1:exon

position:709939:1
position: 709939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:709939-709979:1:exon

position:709979:1
position: 709979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:712981-713046:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:716253-716336:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:717140-717226:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:722455-722593:1:exon

LOC116957720
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: LOC116957720
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(762449..859215)
location: region:762449-859215:-1
so has part: feature:762449-859215:-1:exon
subclass of: SO_0000010

116957720
type: Gene
SIO_000068: ncbigene

position:762449:-1
position: 762449
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:859215:-1
position: 859215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:762449-859215:-1:exon

LOC116957720
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: LOC116957720
product: fibroblast growth factor receptor 2-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 81% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032980041.1
SIO_010081: LOC116957720
subclass of: SO_0000673
so part of: LOC116957720
location: complement(join(762449..762452,775095..775360,779934..780039,783802..783939,795478..795548,799703..799825,803401..803519,806020..806094,807510..807620,809781..809902,816965..817137,826142..826495,828972..829152,830307..830380,834293..834440,841377..841567,850215..850338,855094..855262,858882..859215))
location: region:762449-859215:-1
so has part: feature:858882-859215:-1:exon
so has part: feature:855094-855262:-1:exon
so has part: feature:850215-850338:-1:exon
so has part: feature:841377-841567:-1:exon
so has part: feature:834293-834440:-1:exon
so has part: feature:830307-830380:-1:exon
so has part: feature:828972-829152:-1:exon
so has part: feature:826142-826495:-1:exon
so has part: feature:816965-817137:-1:exon
so has part: feature:809781-809902:-1:exon
so has part: feature:807510-807620:-1:exon
so has part: feature:806020-806094:-1:exon
so has part: feature:803401-803519:-1:exon
so has part: feature:799703-799825:-1:exon
so has part: feature:795478-795548:-1:exon
so has part: feature:783802-783939:-1:exon
so has part: feature:779934-780039:-1:exon
so has part: feature:775095-775360:-1:exon
so has part: feature:762449-762452:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:858882-859215:-1:exon

position:858882:-1
position: 858882
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:855094-855262:-1:exon

position:855094:-1
position: 855094
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:855262:-1
position: 855262
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:850215-850338:-1:exon

position:850215:-1
position: 850215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:850338:-1
position: 850338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:841377-841567:-1:exon

position:841377:-1
position: 841377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:841567:-1
position: 841567
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:834293-834440:-1:exon

position:834293:-1
position: 834293
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:834440:-1
position: 834440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:830307-830380:-1:exon

position:830307:-1
position: 830307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:830380:-1
position: 830380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:828972-829152:-1:exon

position:828972:-1
position: 828972
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:829152:-1
position: 829152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:826142-826495:-1:exon

position:826142:-1
position: 826142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:826495:-1
position: 826495
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:816965-817137:-1:exon

position:816965:-1
position: 816965
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:817137:-1
position: 817137
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:809781-809902:-1:exon

position:809781:-1
position: 809781
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:809902:-1
position: 809902
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:807510-807620:-1:exon

position:807510:-1
position: 807510
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:807620:-1
position: 807620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:806020-806094:-1:exon

position:806020:-1
position: 806020
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:806094:-1
position: 806094
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:803401-803519:-1:exon

position:803401:-1
position: 803401
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:803519:-1
position: 803519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:799703-799825:-1:exon

position:799703:-1
position: 799703
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:799825:-1
position: 799825
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:795478-795548:-1:exon

position:795478:-1
position: 795478
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:795548:-1
position: 795548
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:783802-783939:-1:exon

position:783802:-1
position: 783802
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:783939:-1
position: 783939
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:779934-780039:-1:exon

position:779934:-1
position: 779934
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:780039:-1
position: 780039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:775095-775360:-1:exon

position:775095:-1
position: 775095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:775360:-1
position: 775360
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:762449-762452:-1:exon

position:762452:-1
position: 762452
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116957720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: LOC116957720
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: fibroblast growth factor receptor 2-like
translation: MEGEEVVYRERSRCHSTDASPAGSTADVLRPEGEELARARPRVASRSFRSFSLRLGPVPSAVVPPPPVRGTLRQVARQRCCDSDSTAFAFWGRPVTSPRSNPAMPPLHFRQSPPYWTHTEKMEXRLHAVPAANTVKFRCPAGGSPPPSIRWLKNGRDFRGEHRIGGIKVRHQHWSLIMESVVPSDRGNYTCLVENPYGNLTHTYQLDVVERSPHRPILQAGLPANQTVAVGSDVEFHCRVYSDAQPHIQWLKHVEVNGSRYGPDGLPYVHVLKRSGINISEAMVLRLANVTRADAGQYACRVSNYIGEANQSAWLSVVGLGAVADGGEYTCLAGNSIGISHHSAWLLVDLNIPPLPTPTCLPLTTYPYLPTALSLRNVMLADGGEYTCLAGNSIGISHHSAWLLVVPALDMTNNQLGGAGGSAGGSAGGSAGGSAGGAAGGIGVALLPPLPDSAEVAIYCVGGLLLVLMVMVVAMAGPAGPEELPLAQGRSPGRRGRGPGRRGRGQEVQGAAALQAEQGIPLKRQVSVESTSSMHSGVSLVRRCRFSSSEGGAGGGAGGGSALGGLLEFDLTEDPHWEFPRERLTLGKRLGEGCFGQVMMAEALGIDQDGRCHSTTVAAKMLKDDATDKELSDLVAEMEMMKTIGKHKNILNLLGACTQGGPLLVLVEFASKGNLREFLRARRPPGMDYTCGEVTRVPDEQLTFKDLVSCAYQVARGMEYLASNKCIHRDLAARNVLVTHDVVMKIADFGLARDIHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWETFTLGGSPYPGIPVEELFKLLRDGYRMEQPSSCNHELYMMMRDCWASMPYQRPTFHQLVEDLDRILSITTQDDYLELSDPVELLQVSTVRGVARNSTTSSTSSSTSSTSSTSTSSGDDSVFSHEHQQQHHHHHHQQQQNHQQQHRHQHQQQNHQHHQQNHH
SIO_010081: LOC116957720
subclass of: SO_0000673
so part of: LOC116957720
location: complement(join(762449..762452,775095..775360,779934..780039,783802..783939,795478..795548,799703..799825,803401..803519,806020..806094,807510..807620,809781..809902,816965..817137,826142..826495,828972..829152,830307..830380,834293..834440,841377..841567,850215..850338,855094..855262,858882..859215))
location: region:762449-859215:-1
so has part: feature:858882-859215:-1:exon
so has part: feature:855094-855262:-1:exon
so has part: feature:850215-850338:-1:exon
so has part: feature:841377-841567:-1:exon
so has part: feature:834293-834440:-1:exon
so has part: feature:830307-830380:-1:exon
so has part: feature:828972-829152:-1:exon
so has part: feature:826142-826495:-1:exon
so has part: feature:816965-817137:-1:exon
so has part: feature:809781-809902:-1:exon
so has part: feature:807510-807620:-1:exon
so has part: feature:806020-806094:-1:exon
so has part: feature:803401-803519:-1:exon
so has part: feature:799703-799825:-1:exon
so has part: feature:795478-795548:-1:exon
so has part: feature:783802-783939:-1:exon
so has part: feature:779934-780039:-1:exon
so has part: feature:775095-775360:-1:exon
so has part: feature:762449-762452:-1:exon

XP_032835932.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:858882-859215:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:855094-855262:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:850215-850338:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:841377-841567:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:834293-834440:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:830307-830380:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:828972-829152:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:826142-826495:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:816965-817137:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:809781-809902:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:807510-807620:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:806020-806094:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:803401-803519:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:799703-799825:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:795478-795548:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:783802-783939:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:779934-780039:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:775095-775360:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:762449-762452:-1:exon

LOC116957723
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: LOC116957723
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(866684..886381)
location: region:866684-886381:-1
so has part: feature:866684-886381:-1:exon
subclass of: SO_0000011

116957723
type: Gene
SIO_000068: ncbigene

position:866684:-1
position: 866684
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:886381:-1
position: 886381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:866684-886381:-1:exon

LOC116957723
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 7757
nc RNA class: lncRNA
gene: LOC116957723
product: uncharacterized LOC116957723
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 52 samples with support for all annotated introns
transcript id: XR_004405239.1
SIO_010081: LOC116957723
subclass of: SO_0000673
so part of: LOC116957723
location: complement(join(866684..866914,879063..880041,886247..886381))
location: region:866684-886381:-1
so has part: feature:886247-886381:-1:exon
so has part: feature:879063-880041:-1:exon
so has part: feature:866684-866914:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:886247-886381:-1:exon

position:886247:-1
position: 886247
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:879063-880041:-1:exon

position:879063:-1
position: 879063
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:880041:-1
position: 880041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:866684-866914:-1:exon

position:866914:-1
position: 866914
reference: sequence
type: ReverseStrandPosition
type: ExactPosition