Petromyzon marinus isolate kPetMar1 chromosome 82, kPetMar1.pri, whole genome shotgun sequence.
type: Entry
definition: Petromyzon marinus isolate kPetMar1 chromosome 82, kPetMar1.pri, whole genome shotgun sequence.
sequence version: NC_046150.1
sequence date: 2020-03-20
sequence: sequence
division: CON
label: NC_046150.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA611764
dblink: SAMN12629506
keyword: WGS
keyword: RefSeq
source: Petromyzon marinus (sea lamprey)
organism: Petromyzon marinus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Cyclostomata; Hyperoartia; Petromyzontiformes; Petromyzontidae; Petromyzon.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM021522.1.\nAssembly name: kPetMar1.pri\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2020/02/24. The original whole-genome shotgun project has the\naccession JAAIYE000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 09-DEC-2019\nAssembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v.\n DNANexus 1.0.6; purge_dups v. github\n ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b;\n scaff10x v. 4.1.0; Bionano Solve DLS v.\n 3.2.1; Salsa HiC v. 2.2; Arrow\n smrtanalysis Pacbio polishing & gap\n filling v. smrtlink_6.0.0.47841;\n longranger align v. 2.2.2; freebayes\n Illumina polishing v. 1.3.1; gEVAL manual\n curation v. 2019-12-09; VGP assembly\n pipeline individual v. 1.6\nAssembly Name :: kPetMar1.pri\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 62.36x\nSequencing Technology :: PacBio Sequel I CLR; llumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Petromyzon marinus Annotation\n Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.3\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 1113707
topology: linear
so has quality: SO_0000987
location: 1..1113707
location: region:1-1113707:1
RO_0002162: 7757

NC_046150
type: RefSeq
SIO_000068: refseq

PRJNA611764
type: BioProject
SIO_000068: bioproject

SAMN12629506
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1113707:1
position: 1113707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-1113707:1:source
so part of: sequence
organism: Petromyzon marinus
mol type: genomic DNA
isolate: kPetMar1
chromosome: 82
sex: male
tissue type: sperm
dev stage: adult
country: USA: Great Lakes Fisheries Commission
lat lon: 42.2821 N 83.74847 W
collection date: 12-Jun-2018
collected by: Jeremiah Smith

7757
type: Taxonomy
SIO_000068: taxonomy

PSMG1
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: PSMG1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(76624..90827)
location: region:76624-90827:-1
so has part: feature:76624-90827:-1:exon
subclass of: SO_0000010

116957698
type: Gene
SIO_000068: ncbigene

position:76624:-1
position: 76624
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:90827:-1
position: 90827
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:76624-90827:-1:exon

PSMG1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: PSMG1
product: proteasome assembly chaperone 1, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 64 samples with support for all annotated introns
transcript id: XM_032980019.1
SIO_010081: PSMG1
subclass of: SO_0000673
so part of: PSMG1
location: complement(join(76624..77150,80202..80338,81172..81346,82018..82080,82291..82448,83529..83611,84056..84171,90534..90827))
location: region:76624-90827:-1
so has part: feature:90534-90827:-1:exon
so has part: feature:84056-84171:-1:exon
so has part: feature:83529-83611:-1:exon
so has part: feature:82291-82448:-1:exon
so has part: feature:82018-82080:-1:exon
so has part: feature:81172-81346:-1:exon
so has part: feature:80202-80338:-1:exon
so has part: feature:76624-77150:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:90534-90827:-1:exon

position:90534:-1
position: 90534
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:84056-84171:-1:exon

position:84056:-1
position: 84056
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:84171:-1
position: 84171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:83529-83611:-1:exon

position:83529:-1
position: 83529
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:83611:-1
position: 83611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:82291-82448:-1:exon

position:82291:-1
position: 82291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:82448:-1
position: 82448
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:82018-82080:-1:exon

position:82018:-1
position: 82018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:82080:-1
position: 82080
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:81172-81346:-1:exon

position:81172:-1
position: 81172
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:81346:-1
position: 81346
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:80202-80338:-1:exon

position:80202:-1
position: 80202
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:80338:-1
position: 80338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:76624-77150:-1:exon

position:77150:-1
position: 77150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PSMG1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: PSMG1
product: proteasome assembly chaperone 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 63 samples with support for all annotated introns
transcript id: XM_032980016.1
SIO_010081: PSMG1
subclass of: SO_0000673
so part of: PSMG1
location: complement(join(76624..77150,80202..80338,81172..81346,82018..82080,82291..82448,83529..83611,84056..84180,87653..87734,90534..90827))
location: region:76624-90827:-1
so has part: feature:90534-90827:-1:exon
so has part: feature:87653-87734:-1:exon
so has part: feature:84056-84180:-1:exon
so has part: feature:83529-83611:-1:exon
so has part: feature:82291-82448:-1:exon
so has part: feature:82018-82080:-1:exon
so has part: feature:81172-81346:-1:exon
so has part: feature:80202-80338:-1:exon
so has part: feature:76624-77150:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:90534-90827:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:87653-87734:-1:exon

position:87653:-1
position: 87653
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:87734:-1
position: 87734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:84056-84180:-1:exon

position:84180:-1
position: 84180
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:83529-83611:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:82291-82448:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:82018-82080:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:81172-81346:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:80202-80338:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:76624-77150:-1:exon

PSMG1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: PSMG1
product: proteasome assembly chaperone 1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 57 samples with support for all annotated introns
transcript id: XM_032980018.1
SIO_010081: PSMG1
subclass of: SO_0000673
so part of: PSMG1
location: complement(join(76624..77150,80202..80338,81172..81346,82018..82080,82291..82448,83529..83611,84056..84171,90524..90827))
location: region:76624-90827:-1
so has part: feature:90524-90827:-1:exon
so has part: feature:84056-84171:-1:exon
so has part: feature:83529-83611:-1:exon
so has part: feature:82291-82448:-1:exon
so has part: feature:82018-82080:-1:exon
so has part: feature:81172-81346:-1:exon
so has part: feature:80202-80338:-1:exon
so has part: feature:76624-77150:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:90524-90827:-1:exon

position:90524:-1
position: 90524
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:84056-84171:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:83529-83611:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:82291-82448:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:82018-82080:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:81172-81346:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:80202-80338:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:76624-77150:-1:exon

PSMG1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: PSMG1
product: proteasome assembly chaperone 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 58 samples with support for all annotated introns
transcript id: XM_032980017.1
SIO_010081: PSMG1
subclass of: SO_0000673
so part of: PSMG1
location: complement(join(76624..77150,80202..80338,81172..81346,82018..82080,82291..82448,83529..83611,84056..84180,90524..90827))
location: region:76624-90827:-1
so has part: feature:90524-90827:-1:exon
so has part: feature:84056-84180:-1:exon
so has part: feature:83529-83611:-1:exon
so has part: feature:82291-82448:-1:exon
so has part: feature:82018-82080:-1:exon
so has part: feature:81172-81346:-1:exon
so has part: feature:80202-80338:-1:exon
so has part: feature:76624-77150:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:90524-90827:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:84056-84180:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:83529-83611:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:82291-82448:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:82018-82080:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:81172-81346:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:80202-80338:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:76624-77150:-1:exon

PSMG1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: PSMG1
product: proteasome assembly chaperone 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 71 samples with support for all annotated introns
transcript id: XM_032980015.1
SIO_010081: PSMG1
subclass of: SO_0000673
so part of: PSMG1
location: complement(join(76624..77150,80202..80338,81172..81346,82018..82080,82291..82448,83529..83611,84056..84180,90534..90826))
location: region:76624-90826:-1
so has part: feature:90534-90826:-1:exon
so has part: feature:84056-84180:-1:exon
so has part: feature:83529-83611:-1:exon
so has part: feature:82291-82448:-1:exon
so has part: feature:82018-82080:-1:exon
so has part: feature:81172-81346:-1:exon
so has part: feature:80202-80338:-1:exon
so has part: feature:76624-77150:-1:exon

position:90826:-1
position: 90826
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:90534-90826:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:84056-84180:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:83529-83611:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:82291-82448:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:82018-82080:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:81172-81346:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:80202-80338:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:76624-77150:-1:exon

PSMG1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: PSMG1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: proteasome assembly chaperone 1
translation: MASFFGEVLPVFSRAGSDDESGDDEESEEEDSRVVMSWSDGAIPSSCCTLILATGEHALGFVQVFVLGLGGQSWVQRGSLHPQGTTPAPPAPPGEKWGVQTCRVYQHRDSPEVWVALCAYTIPEELLHDWAKQLVTLADPVRGRVLVLSGLRASELLVAPLGRTLSSAPWKDPLAWPLLPPPMHATGLPAAVVSEAVLRAVPVALYLLYSEAPAPDLPSTRAFLPVLSLPPLTGLTPLSAPSLPQLQMLMKPPALPSNIYT
SIO_010081: PSMG1
subclass of: SO_0000673
so part of: PSMG1
location: complement(join(77076..77150,80202..80338,81172..81346,82018..82080,82291..82448,83529..83611,84056..84150))
location: region:77076-84150:-1
so has part: feature:84056-84150:-1:exon
so has part: feature:83529-83611:-1:exon
so has part: feature:82291-82448:-1:exon
so has part: feature:82018-82080:-1:exon
so has part: feature:81172-81346:-1:exon
so has part: feature:80202-80338:-1:exon
so has part: feature:77076-77150:-1:exon

XP_032835906.1
type: Protein
SIO_000068: ncbiprotein

position:77076:-1
position: 77076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:84150:-1
position: 84150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:84056-84150:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:83529-83611:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:82291-82448:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:82018-82080:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:81172-81346:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:80202-80338:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:77076-77150:-1:exon

PSMG1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: PSMG1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: proteasome assembly chaperone 1
translation: MASFFGEVLPVFSRAGSDDESGDDEESEEEDSRVVMSWSDGAIPSSCCTLILATGEHALGFVQVFVLGLGGQSWVQRGSLHPQGTTPAPPAPPGEKWGVQTCRVYQHRDSPEVWVALCAYTIPEELLHDWAKQLVTLADPVRGRVLVLSGLRASELLVAPLGRTLSSAPWKDPLAWPLLPPPMHATGLPAAVVSEAVLRAVPVALYLLYSEAPAPDLPSTRAFLPVLSLPPLTGLTPLSAPSLPQLQMLMKPPALPSNIYT
SIO_010081: PSMG1
subclass of: SO_0000673
so part of: PSMG1
location: complement(join(77076..77150,80202..80338,81172..81346,82018..82080,82291..82448,83529..83611,84056..84150))
location: region:77076-84150:-1
so has part: feature:84056-84150:-1:exon
so has part: feature:83529-83611:-1:exon
so has part: feature:82291-82448:-1:exon
so has part: feature:82018-82080:-1:exon
so has part: feature:81172-81346:-1:exon
so has part: feature:80202-80338:-1:exon
so has part: feature:77076-77150:-1:exon

XP_032835907.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:84056-84150:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:83529-83611:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:82291-82448:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:82018-82080:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:81172-81346:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:80202-80338:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:77076-77150:-1:exon

PSMG1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: PSMG1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: proteasome assembly chaperone 1
translation: MASFFGEVLPVFSRAGSDDESGDDEESEEEDSRVVMSWSDGAIPSSCCTLILATGEHALGFVQVFVLGLGGQSWVQRGSLHPQGTTPAPPAPPGEKWGVQTCRVYQHRDSPEVWVALCAYTIPEELLHDWAKQLVTLADPVRGRVLVLSGLRASELLVAPLGRTLSSAPWKDPLAWPLLPPPMHATGLPAAVVSEAVLRAVPVALYLLYSEAPAPDLPSTRAFLPVLSLPPLTGLTPLSAPSLPQLQMLMKPPALPSNIYT
SIO_010081: PSMG1
subclass of: SO_0000673
so part of: PSMG1
location: complement(join(77076..77150,80202..80338,81172..81346,82018..82080,82291..82448,83529..83611,84056..84150))
location: region:77076-84150:-1
so has part: feature:84056-84150:-1:exon
so has part: feature:83529-83611:-1:exon
so has part: feature:82291-82448:-1:exon
so has part: feature:82018-82080:-1:exon
so has part: feature:81172-81346:-1:exon
so has part: feature:80202-80338:-1:exon
so has part: feature:77076-77150:-1:exon

XP_032835908.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:84056-84150:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:83529-83611:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:82291-82448:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:82018-82080:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:81172-81346:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:80202-80338:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:77076-77150:-1:exon

PSMG1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: PSMG1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: proteasome assembly chaperone 1
translation: MASFFGEVLPVFSRAGSDDESGDDEESEEEDSRVVMSWSDGAIPSSCCTLILATGEHALGFVQVFVLGLGGQSWVQRGSLHPQGTTPAPPAPPGEKWGVQTCRVYQHRDSPEVWVALCAYTIPEELLHDWAKQLVTLADPVRGRVLVLSGLRASELLVAPLGRTLSSAPWKDPLAWPLLPPPMHATGLPAAVVSEAVLRAVPVALYLLYSEAPAPDLPSTRAFLPVLSLPPLTGLTPLSAPSLPQLQMLMKPPALPSNIYT
SIO_010081: PSMG1
subclass of: SO_0000673
so part of: PSMG1
location: complement(join(77076..77150,80202..80338,81172..81346,82018..82080,82291..82448,83529..83611,84056..84150))
location: region:77076-84150:-1
so has part: feature:84056-84150:-1:exon
so has part: feature:83529-83611:-1:exon
so has part: feature:82291-82448:-1:exon
so has part: feature:82018-82080:-1:exon
so has part: feature:81172-81346:-1:exon
so has part: feature:80202-80338:-1:exon
so has part: feature:77076-77150:-1:exon

XP_032835909.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:84056-84150:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:83529-83611:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:82291-82448:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:82018-82080:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:81172-81346:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:80202-80338:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:77076-77150:-1:exon

PSMG1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: PSMG1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: proteasome assembly chaperone 1
translation: MASFFGEVLPVFSRAGSDDESGDDEESEEEDSRVVMSWSDGAIPSSCCTLILATGEHALGFVQVFVLGLGGQSWVQRGSLHPQGTTPAPPAPPGEKWGVQTCRVYQHRDSPEVWVALCAYTIPEELLHDWAKQLVTLADPVRGRVLVLSGLRASELLVAPLGRTLSSAPWKDPLAWPLLPPPMHATGLPAAVVSEAVLRAVPVALYLLYSEAPAPDLPSTRAFLPVLSLPPLTGLTPLSAPSLPQLQMLMKPPALPSNIYT
SIO_010081: PSMG1
subclass of: SO_0000673
so part of: PSMG1
location: complement(join(77076..77150,80202..80338,81172..81346,82018..82080,82291..82448,83529..83611,84056..84150))
location: region:77076-84150:-1
so has part: feature:84056-84150:-1:exon
so has part: feature:83529-83611:-1:exon
so has part: feature:82291-82448:-1:exon
so has part: feature:82018-82080:-1:exon
so has part: feature:81172-81346:-1:exon
so has part: feature:80202-80338:-1:exon
so has part: feature:77076-77150:-1:exon

XP_032835910.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:84056-84150:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:83529-83611:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:82291-82448:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:82018-82080:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:81172-81346:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:80202-80338:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:77076-77150:-1:exon

LOC116957697
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: LOC116957697
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(139190..142782)
location: region:139190-142782:-1
so has part: feature:139190-142782:-1:exon
subclass of: SO_0000010

116957697
type: Gene
SIO_000068: ncbigene

position:139190:-1
position: 139190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:142782:-1
position: 142782
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:139190-142782:-1:exon

LOC116957697
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: LOC116957697
product: toll-like receptor 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032980013.1
SIO_010081: LOC116957697
subclass of: SO_0000673
so part of: LOC116957697
location: complement(139190..142782)
location: region:139190-142782:-1
so has part: feature:139190-142782:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:139190-142782:-1:exon

LOC116957697
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: LOC116957697
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: toll-like receptor 2
translation: MKFENLKELYLSNNKLSTIPVQLPQVLPWLKVLTIHGNILWTVDPFVLQGLGNPTLLDMRGNPFHCMCDIRHFVTFCESSSRLYIEGWPANYQCSNPENEVGKQLSSVSYPTLYCDTTMKSVIACVTTFVCTALLVGLCWYLDALWYLCMTWAWLQAKRRNFLSDPDGNKDYDAFVSYSQNDAAWVMEQLLSELESHSVPPFRLCVHERDFVPSHHIMDNIIDCIEQSRKTLFVISQSFVESEWCHYELYFAQQRLIENRDDA
SIO_010081: LOC116957697
subclass of: SO_0000673
so part of: LOC116957697
location: complement(141620..142411)
location: region:141620-142411:-1
so has part: feature:141620-142411:-1:exon

XP_032835904.1
type: Protein
SIO_000068: ncbiprotein

position:141620:-1
position: 141620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:142411:-1
position: 142411
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:141620-142411:-1:exon

LOC116957696
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: LOC116957696
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(152049..167721)
location: region:152049-167721:-1
so has part: feature:152049-167721:-1:exon
subclass of: SO_0000010

116957696
type: Gene
SIO_000068: ncbigene

position:152049:-1
position: 152049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:167721:-1
position: 167721
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:152049-167721:-1:exon

LOC116957696
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: LOC116957696
product: toll-like receptor 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 24 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 47 samples with support for all annotated introns
transcript id: XM_032980009.1
SIO_010081: LOC116957696
subclass of: SO_0000673
so part of: LOC116957696
location: complement(join(152049..154683,155910..155966,167564..167721))
location: region:152049-167721:-1
so has part: feature:167564-167721:-1:exon
so has part: feature:155910-155966:-1:exon
so has part: feature:152049-154683:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:167564-167721:-1:exon

position:167564:-1
position: 167564
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:155910-155966:-1:exon

position:155910:-1
position: 155910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:155966:-1
position: 155966
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:152049-154683:-1:exon

position:154683:-1
position: 154683
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116957696
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: LOC116957696
product: toll-like receptor 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 24 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
transcript id: XM_032980010.1
SIO_010081: LOC116957696
subclass of: SO_0000673
so part of: LOC116957696
location: complement(join(152049..154683,155910..155966,157461..157661,167564..167721))
location: region:152049-167721:-1
so has part: feature:167564-167721:-1:exon
so has part: feature:157461-157661:-1:exon
so has part: feature:155910-155966:-1:exon
so has part: feature:152049-154683:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:167564-167721:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:157461-157661:-1:exon

position:157461:-1
position: 157461
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:157661:-1
position: 157661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:155910-155966:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:152049-154683:-1:exon

LOC116957696
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: LOC116957696
product: toll-like receptor 2, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 24 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
transcript id: XM_032980012.1
SIO_010081: LOC116957696
subclass of: SO_0000673
so part of: LOC116957696
location: complement(join(152049..154683,155910..155966,167319..167552))
location: region:152049-167552:-1
so has part: feature:167319-167552:-1:exon
so has part: feature:155910-155966:-1:exon
so has part: feature:152049-154683:-1:exon

position:167552:-1
position: 167552
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:167319-167552:-1:exon

position:167319:-1
position: 167319
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:155910-155966:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:152049-154683:-1:exon

LOC116957696
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: LOC116957696
product: toll-like receptor 2, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 24 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
transcript id: XM_032980011.1
SIO_010081: LOC116957696
subclass of: SO_0000673
so part of: LOC116957696
location: complement(join(152049..154683,155910..155966,161316..162156))
location: region:152049-162156:-1
so has part: feature:161316-162156:-1:exon
so has part: feature:155910-155966:-1:exon
so has part: feature:152049-154683:-1:exon

position:162156:-1
position: 162156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:161316-162156:-1:exon

position:161316:-1
position: 161316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:155910-155966:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:152049-154683:-1:exon

LOC116957696
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: LOC116957696
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: toll-like receptor 2
translation: MEMGVALLVMVVLMVGAAWSHGTSIFNGCQIRGVRADCSRLRLQSVPEYLPVTITSLDLSYNEISSIQREHLSALLQLKSLNVAFNQISSIDPWVFLNNSALEDIDLSNNRLPGAWDDSFAVLKSVRSLDVRNNSYNSLHIPGSFTSLKTLYHLKVGGANVTEMYQSVSKTMELEHLSIVTGDLTIYTRGSLSAFHSLKSVTLALTMHTNIELLTDIICDVSCNSVELQLEFLNFTDYSRDVNPFQCISKPQSMVEVLTISHTCVEDSAAKFLVNEVIESTKLRCLNLRHIEYEGYGYFALKDSLKSAPNVRHIFIENFNIKVFNSFYALLNLKPFLINVQSLVLNFVHLYYFPCEVLSGLTSIVTLDISGNLLTEYTSFLTCSNVRLPYLMELIFRKNHLTHIQNVGAMLISCPSLKLLDVSENQIVSEWSSNCKWPSNLQVFNISSNLLTDDVFDCLPTSLQSLDVSNNKIQNVNNKLMKFKNLKELHLSNNKINTIPVELLQALPWLKVLTIAGNILWTVEPSVLHHLGNLTLLDMRGNPFYCTCNIRHFVTFCENSSPLRIEGWPAEYHCSNPENEVGKQLSSVSYPTLYCDTTMKSVIACVTTFVCTALLVGLCWYLDALWYVRMTWAWLQAKRRNFLADPDENSVYDAFVSYSQQDAAWVMQQLMPELESHSVPPFRLCVHERDFIPGRHIMDNIIDCIELSRKTLFIISQSFVESEWCHYELYFAQQRLIESRDDALVLVLLEPIPHNSVPSRFCRLRCLMKRKTYLEWPAHRGKQALFWANLRATLGRQKQQEPKNEAIALAPP
SIO_010081: LOC116957696
subclass of: SO_0000673
so part of: LOC116957696
location: complement(152218..154656)
location: region:152218-154656:-1
so has part: feature:152218-154656:-1:exon

XP_032835900.1
type: Protein
SIO_000068: ncbiprotein

position:152218:-1
position: 152218
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:154656:-1
position: 154656
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:152218-154656:-1:exon

LOC116957696
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: LOC116957696
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: toll-like receptor 2
translation: MEMGVALLVMVVLMVGAAWSHGTSIFNGCQIRGVRADCSRLRLQSVPEYLPVTITSLDLSYNEISSIQREHLSALLQLKSLNVAFNQISSIDPWVFLNNSALEDIDLSNNRLPGAWDDSFAVLKSVRSLDVRNNSYNSLHIPGSFTSLKTLYHLKVGGANVTEMYQSVSKTMELEHLSIVTGDLTIYTRGSLSAFHSLKSVTLALTMHTNIELLTDIICDVSCNSVELQLEFLNFTDYSRDVNPFQCISKPQSMVEVLTISHTCVEDSAAKFLVNEVIESTKLRCLNLRHIEYEGYGYFALKDSLKSAPNVRHIFIENFNIKVFNSFYALLNLKPFLINVQSLVLNFVHLYYFPCEVLSGLTSIVTLDISGNLLTEYTSFLTCSNVRLPYLMELIFRKNHLTHIQNVGAMLISCPSLKLLDVSENQIVSEWSSNCKWPSNLQVFNISSNLLTDDVFDCLPTSLQSLDVSNNKIQNVNNKLMKFKNLKELHLSNNKINTIPVELLQALPWLKVLTIAGNILWTVEPSVLHHLGNLTLLDMRGNPFYCTCNIRHFVTFCENSSPLRIEGWPAEYHCSNPENEVGKQLSSVSYPTLYCDTTMKSVIACVTTFVCTALLVGLCWYLDALWYVRMTWAWLQAKRRNFLADPDENSVYDAFVSYSQQDAAWVMQQLMPELESHSVPPFRLCVHERDFIPGRHIMDNIIDCIELSRKTLFIISQSFVESEWCHYELYFAQQRLIESRDDALVLVLLEPIPHNSVPSRFCRLRCLMKRKTYLEWPAHRGKQALFWANLRATLGRQKQQEPKNEAIALAPP
SIO_010081: LOC116957696
subclass of: SO_0000673
so part of: LOC116957696
location: complement(152218..154656)
location: region:152218-154656:-1
so has part: feature:152218-154656:-1:exon

XP_032835901.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:152218-154656:-1:exon

LOC116957696
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: LOC116957696
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: toll-like receptor 2
translation: MEMGVALLVMVVLMVGAAWSHGTSIFNGCQIRGVRADCSRLRLQSVPEYLPVTITSLDLSYNEISSIQREHLSALLQLKSLNVAFNQISSIDPWVFLNNSALEDIDLSNNRLPGAWDDSFAVLKSVRSLDVRNNSYNSLHIPGSFTSLKTLYHLKVGGANVTEMYQSVSKTMELEHLSIVTGDLTIYTRGSLSAFHSLKSVTLALTMHTNIELLTDIICDVSCNSVELQLEFLNFTDYSRDVNPFQCISKPQSMVEVLTISHTCVEDSAAKFLVNEVIESTKLRCLNLRHIEYEGYGYFALKDSLKSAPNVRHIFIENFNIKVFNSFYALLNLKPFLINVQSLVLNFVHLYYFPCEVLSGLTSIVTLDISGNLLTEYTSFLTCSNVRLPYLMELIFRKNHLTHIQNVGAMLISCPSLKLLDVSENQIVSEWSSNCKWPSNLQVFNISSNLLTDDVFDCLPTSLQSLDVSNNKIQNVNNKLMKFKNLKELHLSNNKINTIPVELLQALPWLKVLTIAGNILWTVEPSVLHHLGNLTLLDMRGNPFYCTCNIRHFVTFCENSSPLRIEGWPAEYHCSNPENEVGKQLSSVSYPTLYCDTTMKSVIACVTTFVCTALLVGLCWYLDALWYVRMTWAWLQAKRRNFLADPDENSVYDAFVSYSQQDAAWVMQQLMPELESHSVPPFRLCVHERDFIPGRHIMDNIIDCIELSRKTLFIISQSFVESEWCHYELYFAQQRLIESRDDALVLVLLEPIPHNSVPSRFCRLRCLMKRKTYLEWPAHRGKQALFWANLRATLGRQKQQEPKNEAIALAPP
SIO_010081: LOC116957696
subclass of: SO_0000673
so part of: LOC116957696
location: complement(152218..154656)
location: region:152218-154656:-1
so has part: feature:152218-154656:-1:exon

XP_032835902.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:152218-154656:-1:exon

LOC116957696
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: LOC116957696
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: toll-like receptor 2
translation: MEMGVALLVMVVLMVGAAWSHGTSIFNGCQIRGVRADCSRLRLQSVPEYLPVTITSLDLSYNEISSIQREHLSALLQLKSLNVAFNQISSIDPWVFLNNSALEDIDLSNNRLPGAWDDSFAVLKSVRSLDVRNNSYNSLHIPGSFTSLKTLYHLKVGGANVTEMYQSVSKTMELEHLSIVTGDLTIYTRGSLSAFHSLKSVTLALTMHTNIELLTDIICDVSCNSVELQLEFLNFTDYSRDVNPFQCISKPQSMVEVLTISHTCVEDSAAKFLVNEVIESTKLRCLNLRHIEYEGYGYFALKDSLKSAPNVRHIFIENFNIKVFNSFYALLNLKPFLINVQSLVLNFVHLYYFPCEVLSGLTSIVTLDISGNLLTEYTSFLTCSNVRLPYLMELIFRKNHLTHIQNVGAMLISCPSLKLLDVSENQIVSEWSSNCKWPSNLQVFNISSNLLTDDVFDCLPTSLQSLDVSNNKIQNVNNKLMKFKNLKELHLSNNKINTIPVELLQALPWLKVLTIAGNILWTVEPSVLHHLGNLTLLDMRGNPFYCTCNIRHFVTFCENSSPLRIEGWPAEYHCSNPENEVGKQLSSVSYPTLYCDTTMKSVIACVTTFVCTALLVGLCWYLDALWYVRMTWAWLQAKRRNFLADPDENSVYDAFVSYSQQDAAWVMQQLMPELESHSVPPFRLCVHERDFIPGRHIMDNIIDCIELSRKTLFIISQSFVESEWCHYELYFAQQRLIESRDDALVLVLLEPIPHNSVPSRFCRLRCLMKRKTYLEWPAHRGKQALFWANLRATLGRQKQQEPKNEAIALAPP
SIO_010081: LOC116957696
subclass of: SO_0000673
so part of: LOC116957696
location: complement(152218..154656)
location: region:152218-154656:-1
so has part: feature:152218-154656:-1:exon

XP_032835903.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:152218-154656:-1:exon

C82H1orf52
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: C82H1orf52
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 246285..269639
location: region:246285-269639:1
so has part: feature:246285-269639:1:exon
subclass of: SO_0000010

116957699
type: Gene
SIO_000068: ncbigene

position:246285:1
position: 246285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:269639:1
position: 269639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:246285-269639:1:exon

C82H1orf52
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: C82H1orf52
product: chromosome 82 C1orf52 homolog
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 68 samples with support for all annotated introns
transcript id: XM_032980020.1
SIO_010081: C82H1orf52
subclass of: SO_0000673
so part of: C82H1orf52
location: join(246285..246970,260898..261013,261594..261819,269174..269639)
location: region:246285-269639:1
so has part: feature:246285-246970:1:exon
so has part: feature:260898-261013:1:exon
so has part: feature:261594-261819:1:exon
so has part: feature:269174-269639:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:246285-246970:1:exon

position:246970:1
position: 246970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:260898-261013:1:exon

position:260898:1
position: 260898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:261013:1
position: 261013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:261594-261819:1:exon

position:261594:1
position: 261594
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:261819:1
position: 261819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:269174-269639:1:exon

position:269174:1
position: 269174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

C82H1orf52
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: C82H1orf52
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: UPF0690 protein C1orf52 homolog
translation: MSRRLPHHRHRHLRPAMAGELPDPLSFFVLAASSNDSDGSSSDEEEEGGRGGRGGGAGGGGGGGGGAKRLCTEQRGSGGDGGGGRLPSPALLLSRVLEPSFLQNPYRGHIDWERRAVKGPEEPPREFKPWLSTAARAPAATAASPAVASGAAVPGAVKRAAPTGPDLAVRWSQMYRDDEEEKAKEAASCTRTDGYDDVVVRGDADGDHIEASTAFSTSSHRTPAPPPPGFLTTSSSSLPSSRPAESFQERERKKRERGQANRDASFVEEEKRILRHTHTE
SIO_010081: C82H1orf52
subclass of: SO_0000673
so part of: C82H1orf52
location: join(246721..246970,260898..261013,261594..261819,269174..269424)
location: region:246721-269424:1
so has part: feature:246721-246970:1:exon
so has part: feature:260898-261013:1:exon
so has part: feature:261594-261819:1:exon
so has part: feature:269174-269424:1:exon

XP_032835911.1
type: Protein
SIO_000068: ncbiprotein

position:246721:1
position: 246721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:269424:1
position: 269424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:246721-246970:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:260898-261013:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:261594-261819:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:269174-269424:1:exon

LOC116957700
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: LOC116957700
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 308534..364330
location: region:308534-364330:1
so has part: feature:308534-364330:1:exon
subclass of: SO_0000010

116957700
type: Gene
SIO_000068: ncbigene

position:308534:1
position: 308534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:364330:1
position: 364330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:308534-364330:1:exon

LOC116957700
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: LOC116957700
product: amyloid-beta A4 protein-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032980021.1
SIO_010081: LOC116957700
subclass of: SO_0000673
so part of: LOC116957700
location: join(308534..308818,320112..320282,321601..321793,326357..326469,327652..327929,328720..328867,332178..332423,333540..333701,339684..339812,343780..343882,356155..356487,358293..358361,358633..358778,359300..359512,364111..364330)
location: region:308534-364330:1
so has part: feature:308534-308818:1:exon
so has part: feature:320112-320282:1:exon
so has part: feature:321601-321793:1:exon
so has part: feature:326357-326469:1:exon
so has part: feature:327652-327929:1:exon
so has part: feature:328720-328867:1:exon
so has part: feature:332178-332423:1:exon
so has part: feature:333540-333701:1:exon
so has part: feature:339684-339812:1:exon
so has part: feature:343780-343882:1:exon
so has part: feature:356155-356487:1:exon
so has part: feature:358293-358361:1:exon
so has part: feature:358633-358778:1:exon
so has part: feature:359300-359512:1:exon
so has part: feature:364111-364330:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:308534-308818:1:exon

position:308818:1
position: 308818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:320112-320282:1:exon

position:320112:1
position: 320112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:320282:1
position: 320282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:321601-321793:1:exon

position:321601:1
position: 321601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:321793:1
position: 321793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:326357-326469:1:exon

position:326357:1
position: 326357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:326469:1
position: 326469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:327652-327929:1:exon

position:327652:1
position: 327652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:327929:1
position: 327929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:328720-328867:1:exon

position:328720:1
position: 328720
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:328867:1
position: 328867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:332178-332423:1:exon

position:332178:1
position: 332178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:332423:1
position: 332423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:333540-333701:1:exon

position:333540:1
position: 333540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:333701:1
position: 333701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:339684-339812:1:exon

position:339684:1
position: 339684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:339812:1
position: 339812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:343780-343882:1:exon

position:343780:1
position: 343780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:343882:1
position: 343882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:356155-356487:1:exon

position:356155:1
position: 356155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:356487:1
position: 356487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:358293-358361:1:exon

position:358293:1
position: 358293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:358361:1
position: 358361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:358633-358778:1:exon

position:358633:1
position: 358633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:358778:1
position: 358778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:359300-359512:1:exon

position:359300:1
position: 359300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:359512:1
position: 359512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:364111-364330:1:exon

position:364111:1
position: 364111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116957700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: LOC116957700
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: amyloid-beta A4 protein-like
translation: MAAQMGRLASAVLGILLTATACHSATLSLAEPQVAMFCGKLNMHLGLDTGRWQPDPSGVTSCLATRQDILAYCQQVYPELQVRNVVEGNSPVTIGGWCRRDRAHGKRSGAGERGGERGDSASTGQCRGHPHVVVPYRCLVGEFKSDALLVPEKCHFLHKEKMEECETHLHWHSTAKEACEAQHSSLLNFGMLLPCAIDRFRGVEFVCCPLDPQRAAHEGQQQPEGQQQEEEEQEDRNLNVGFTSQELRPIDPVYDWWEGGHGTDSNYPASEELTVDDSPPPPALANGDDDAGDDDGDEDAGDGDDDEEEGGDDRDDDDGVEGGEQGEILGGGEEEEEEEVKEEEVKEEAEEEVEEVAGGEHRRFLAAKEALERSHREEMGLAMRAWEQRGSSPGERGGLIQRFQLEVSRMDRAYAQRRQLLLQGHARRAQQALSDRRRAALEELLGTVQGDHETRPHRVVQALRHYLRAESKDRTHALRHLQHTASVDPARAQAMKAQVDAHLLAIDERINQTLALLLGRLPPLSSDMQRQIAAALSPLHETQQQQQQRHRQHKQHKQQQAETPLPAGRRGYGRDALPLPPSPPSASPSPSFSLLPLVASTSGPPPPPPPPPPPPPPPPAQAAPTLLPTSSRIGQPAAPTRYAGSQKSSKYNPGHRTIPDKSSYTHGLVEEEEVDDQEEEEYLEILTNEILVKAPPLGSKGTQQDSAVYQLPQKMMRGGRQHGGEGGGEDDDDDGEDEGEGLVNRGALVGLLAGASIVAAAIVLSLAVLRRKQQQQHASISHGVVEVDAALSPEERHLNKMQQNGYENPTYKYFEQMHI
SIO_010081: LOC116957700
subclass of: SO_0000673
so part of: LOC116957700
location: join(308765..308818,320112..320282,321601..321793,326357..326469,327652..327929,328720..328867,332178..332423,333540..333701,339684..339812,343780..343882,356155..356487,358293..358361,358633..358778,359300..359512,364111..364212)
location: region:308765-364212:1
so has part: feature:308765-308818:1:exon
so has part: feature:320112-320282:1:exon
so has part: feature:321601-321793:1:exon
so has part: feature:326357-326469:1:exon
so has part: feature:327652-327929:1:exon
so has part: feature:328720-328867:1:exon
so has part: feature:332178-332423:1:exon
so has part: feature:333540-333701:1:exon
so has part: feature:339684-339812:1:exon
so has part: feature:343780-343882:1:exon
so has part: feature:356155-356487:1:exon
so has part: feature:358293-358361:1:exon
so has part: feature:358633-358778:1:exon
so has part: feature:359300-359512:1:exon
so has part: feature:364111-364212:1:exon

XP_032835912.1
type: Protein
SIO_000068: ncbiprotein

position:308765:1
position: 308765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:364212:1
position: 364212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:308765-308818:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:320112-320282:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:321601-321793:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:326357-326469:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:327652-327929:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:328720-328867:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:332178-332423:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:333540-333701:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:339684-339812:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:343780-343882:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:356155-356487:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:358293-358361:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:358633-358778:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:359300-359512:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:364111-364212:1:exon

LOC116957706
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: LOC116957706
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 364518..366504
location: region:364518-366504:1
so has part: feature:364518-366504:1:exon
subclass of: SO_0000011

116957706
type: Gene
SIO_000068: ncbigene

position:364518:1
position: 364518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:366504:1
position: 366504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:364518-366504:1:exon

LOC116957706
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 7757
nc RNA class: lncRNA
gene: LOC116957706
product: uncharacterized LOC116957706
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XR_004405232.1
SIO_010081: LOC116957706
subclass of: SO_0000673
so part of: LOC116957706
location: join(364518..364946,365255..366504)
location: region:364518-366504:1
so has part: feature:364518-364946:1:exon
so has part: feature:365255-366504:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:364518-364946:1:exon

position:364946:1
position: 364946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:365255-366504:1:exon

position:365255:1
position: 365255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116957705
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: LOC116957705
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(365354..367744)
location: region:365354-367744:-1
so has part: feature:365354-367744:-1:exon
subclass of: SO_0000011

116957705
type: Gene
SIO_000068: ncbigene

position:365354:-1
position: 365354
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:367744:-1
position: 367744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:365354-367744:-1:exon

LOC116957705
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 7757
nc RNA class: lncRNA
gene: LOC116957705
product: uncharacterized LOC116957705
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns
transcript id: XR_004405231.1
SIO_010081: LOC116957705
subclass of: SO_0000673
so part of: LOC116957705
location: complement(join(365354..366470,366512..367744))
location: region:365354-367744:-1
so has part: feature:366512-367744:-1:exon
so has part: feature:365354-366470:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:366512-367744:-1:exon

position:366512:-1
position: 366512
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:365354-366470:-1:exon

position:366470:-1
position: 366470
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116957704
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: LOC116957704
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 414553..422823
location: region:414553-422823:1
so has part: feature:414553-422823:1:exon
subclass of: SO_0000011

116957704
type: Gene
SIO_000068: ncbigene

position:414553:1
position: 414553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:422823:1
position: 422823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:414553-422823:1:exon

LOC116957704
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 7757
nc RNA class: lncRNA
gene: LOC116957704
product: uncharacterized LOC116957704
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_004405230.1
SIO_010081: LOC116957704
subclass of: SO_0000673
so part of: LOC116957704
location: join(414553..414760,417993..418109,422563..422823)
location: region:414553-422823:1
so has part: feature:414553-414760:1:exon
so has part: feature:417993-418109:1:exon
so has part: feature:422563-422823:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:414553-414760:1:exon

position:414760:1
position: 414760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:417993-418109:1:exon

position:417993:1
position: 417993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:418109:1
position: 418109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:422563-422823:1:exon

position:422563:1
position: 422563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116957702
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: LOC116957702
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 536114..544132
location: region:536114-544132:1
so has part: feature:536114-544132:1:exon
subclass of: SO_0000011

116957702
type: Gene
SIO_000068: ncbigene

position:536114:1
position: 536114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:544132:1
position: 544132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:536114-544132:1:exon

LOC116957702
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 7757
nc RNA class: lncRNA
gene: LOC116957702
product: uncharacterized LOC116957702
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_004405227.1
SIO_010081: LOC116957702
subclass of: SO_0000673
so part of: LOC116957702
location: join(536114..536347,538848..538964,543295..543439,543807..544132)
location: region:536114-544132:1
so has part: feature:536114-536347:1:exon
so has part: feature:538848-538964:1:exon
so has part: feature:543295-543439:1:exon
so has part: feature:543807-544132:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:536114-536347:1:exon

position:536347:1
position: 536347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:538848-538964:1:exon

position:538848:1
position: 538848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:538964:1
position: 538964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:543295-543439:1:exon

position:543295:1
position: 543295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:543439:1
position: 543439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:543807-544132:1:exon

position:543807:1
position: 543807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116957703
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: LOC116957703
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(610349..619166)
location: region:610349-619166:-1
so has part: feature:610349-619166:-1:exon
subclass of: SO_0000011

116957703
type: Gene
SIO_000068: ncbigene

position:610349:-1
position: 610349
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:619166:-1
position: 619166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:610349-619166:-1:exon

LOC116957703
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 7757
nc RNA class: lncRNA
gene: LOC116957703
product: uncharacterized LOC116957703, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_004405229.1
SIO_010081: LOC116957703
subclass of: SO_0000673
so part of: LOC116957703
location: complement(join(610349..610496,610770..610969,616441..616527,618692..619166))
location: region:610349-619166:-1
so has part: feature:618692-619166:-1:exon
so has part: feature:616441-616527:-1:exon
so has part: feature:610770-610969:-1:exon
so has part: feature:610349-610496:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:618692-619166:-1:exon

position:618692:-1
position: 618692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:616441-616527:-1:exon

position:616441:-1
position: 616441
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:616527:-1
position: 616527
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:610770-610969:-1:exon

position:610770:-1
position: 610770
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:610969:-1
position: 610969
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:610349-610496:-1:exon

position:610496:-1
position: 610496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116957703
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 7757
nc RNA class: lncRNA
gene: LOC116957703
product: uncharacterized LOC116957703, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_004405228.1
SIO_010081: LOC116957703
subclass of: SO_0000673
so part of: LOC116957703
location: complement(join(610607..610969,616441..616527,618692..618921))
location: region:610607-618921:-1
so has part: feature:618692-618921:-1:exon
so has part: feature:616441-616527:-1:exon
so has part: feature:610607-610969:-1:exon

position:610607:-1
position: 610607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:618921:-1
position: 618921
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:618692-618921:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:616441-616527:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:610607-610969:-1:exon