Petromyzon marinus isolate kPetMar1 chromosome 81, kPetMar1.pri, whole genome shotgun sequence.
type: Entry
definition: Petromyzon marinus isolate kPetMar1 chromosome 81, kPetMar1.pri, whole genome shotgun sequence.
sequence version: NC_046149.1
sequence date: 2020-03-20
sequence: sequence
division: CON
label: NC_046149.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA611764
dblink: SAMN12629506
keyword: WGS
keyword: RefSeq
source: Petromyzon marinus (sea lamprey)
organism: Petromyzon marinus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Cyclostomata; Hyperoartia; Petromyzontiformes; Petromyzontidae; Petromyzon.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM021521.1.\nAssembly name: kPetMar1.pri\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2020/02/24. The original whole-genome shotgun project has the\naccession JAAIYE000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 09-DEC-2019\nAssembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v.\n DNANexus 1.0.6; purge_dups v. github\n ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b;\n scaff10x v. 4.1.0; Bionano Solve DLS v.\n 3.2.1; Salsa HiC v. 2.2; Arrow\n smrtanalysis Pacbio polishing & gap\n filling v. smrtlink_6.0.0.47841;\n longranger align v. 2.2.2; freebayes\n Illumina polishing v. 1.3.1; gEVAL manual\n curation v. 2019-12-09; VGP assembly\n pipeline individual v. 1.6\nAssembly Name :: kPetMar1.pri\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 62.36x\nSequencing Technology :: PacBio Sequel I CLR; llumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Petromyzon marinus Annotation\n Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.3\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 1225583
topology: linear
so has quality: SO_0000987
location: 1..1225583
location: region:1-1225583:1
RO_0002162: 7757

NC_046149
type: RefSeq
SIO_000068: refseq

PRJNA611764
type: BioProject
SIO_000068: bioproject

SAMN12629506
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1225583:1
position: 1225583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-1225583:1:source
so part of: sequence
organism: Petromyzon marinus
mol type: genomic DNA
isolate: kPetMar1
chromosome: 81
sex: male
tissue type: sperm
dev stage: adult
country: USA: Great Lakes Fisheries Commission
lat lon: 42.2821 N 83.74847 W
collection date: 12-Jun-2018
collected by: Jeremiah Smith

7757
type: Taxonomy
SIO_000068: taxonomy

LOC116957683
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: LOC116957683
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 126740..146629
location: region:126740-146629:1
so has part: feature:126740-146629:1:exon

116957683
type: Gene
SIO_000068: ncbigene

position:126740:1
position: 126740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:146629:1
position: 146629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:126740-146629:1:exon

LOC116957683
type: Exon
subclass of: SO_0000147
RO_0002162: 7757
gene: LOC116957683
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 65 Proteins, and 25% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116957683
subclass of: SO_0000673
so part of: LOC116957683
location: 126740..126946
location: region:126740-126946:1
so has part: feature:126740-126946:1:exon

position:126946:1
position: 126946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:126740-126946:1:exon

LOC116957683
type: Exon
subclass of: SO_0000147
RO_0002162: 7757
gene: LOC116957683
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 65 Proteins, and 25% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116957683
subclass of: SO_0000673
so part of: LOC116957683
location: 130463..130597
location: region:130463-130597:1
so has part: feature:130463-130597:1:exon

position:130463:1
position: 130463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:130597:1
position: 130597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:130463-130597:1:exon

LOC116957683
type: Exon
subclass of: SO_0000147
RO_0002162: 7757
gene: LOC116957683
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 65 Proteins, and 25% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116957683
subclass of: SO_0000673
so part of: LOC116957683
location: 131566..131712
location: region:131566-131712:1
so has part: feature:131566-131712:1:exon

position:131566:1
position: 131566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:131712:1
position: 131712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:131566-131712:1:exon

LOC116957683
type: Exon
subclass of: SO_0000147
RO_0002162: 7757
gene: LOC116957683
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 65 Proteins, and 25% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116957683
subclass of: SO_0000673
so part of: LOC116957683
location: 137363..137496
location: region:137363-137496:1
so has part: feature:137363-137496:1:exon

position:137363:1
position: 137363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:137496:1
position: 137496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:137363-137496:1:exon

LOC116957683
type: Exon
subclass of: SO_0000147
RO_0002162: 7757
gene: LOC116957683
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 65 Proteins, and 25% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116957683
subclass of: SO_0000673
so part of: LOC116957683
location: 137737..137848
location: region:137737-137848:1
so has part: feature:137737-137848:1:exon

position:137737:1
position: 137737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:137848:1
position: 137848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:137737-137848:1:exon

LOC116957683
type: Exon
subclass of: SO_0000147
RO_0002162: 7757
gene: LOC116957683
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 65 Proteins, and 25% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116957683
subclass of: SO_0000673
so part of: LOC116957683
location: 137973..138111
location: region:137973-138111:1
so has part: feature:137973-138111:1:exon

position:137973:1
position: 137973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:138111:1
position: 138111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:137973-138111:1:exon

LOC116957683
type: Exon
subclass of: SO_0000147
RO_0002162: 7757
gene: LOC116957683
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 65 Proteins, and 25% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116957683
subclass of: SO_0000673
so part of: LOC116957683
location: 140831..140960
location: region:140831-140960:1
so has part: feature:140831-140960:1:exon

position:140831:1
position: 140831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:140960:1
position: 140960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:140831-140960:1:exon

LOC116957683
type: Exon
subclass of: SO_0000147
RO_0002162: 7757
gene: LOC116957683
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 65 Proteins, and 25% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116957683
subclass of: SO_0000673
so part of: LOC116957683
location: 142822..142927
location: region:142822-142927:1
so has part: feature:142822-142927:1:exon

position:142822:1
position: 142822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:142927:1
position: 142927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:142822-142927:1:exon

LOC116957683
type: Exon
subclass of: SO_0000147
RO_0002162: 7757
gene: LOC116957683
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 65 Proteins, and 25% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116957683
subclass of: SO_0000673
so part of: LOC116957683
location: 146581..146629
location: region:146581-146629:1
so has part: feature:146581-146629:1:exon

position:146581:1
position: 146581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:146581-146629:1:exon

LOC116957684
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: LOC116957684
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 282574..285650
location: region:282574-285650:1
so has part: feature:282574-285650:1:exon
subclass of: SO_0000010

116957684
type: Gene
SIO_000068: ncbigene

position:282574:1
position: 282574
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:285650:1
position: 285650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:282574-285650:1:exon

LOC116957684
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: LOC116957684
product: hydroxylysine kinase-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 61% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032979995.1
SIO_010081: LOC116957684
subclass of: SO_0000673
so part of: LOC116957684
location: join(282574..282612,283164..283344,284495..284807,285476..285650)
location: region:282574-285650:1
so has part: feature:282574-282612:1:exon
so has part: feature:283164-283344:1:exon
so has part: feature:284495-284807:1:exon
so has part: feature:285476-285650:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:282574-282612:1:exon

position:282612:1
position: 282612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:283164-283344:1:exon

position:283164:1
position: 283164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:283344:1
position: 283344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:284495-284807:1:exon

position:284495:1
position: 284495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:284807:1
position: 284807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:285476-285650:1:exon

position:285476:1
position: 285476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116957684
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: LOC116957684
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: hydroxylysine kinase-like
translation: MTNTEYGSALIRAFEHPFLHSLQRDDFIWNLSNTHLLESYLFTLDGDPNQGLVREVIAKFREEIQPNLHKFTRCIIHGDFNDDNILVQEVAAGSEQQQQQQGPKSAEGAPRHRVSGIVDLNSMMFGYHVYDLAMAIMYMMVESGEAMEAGGHVLAGYESVQALTEDERRAVYFLVACRFCQSLVMARYTILRYPQNADYLLITARTGWVKLRELWTRGLEDMQRLWSDVAARYRN
SIO_010081: LOC116957684
subclass of: SO_0000673
so part of: LOC116957684
location: join(282574..282612,283164..283344,284495..284807,285476..285650)
location: region:282574-285650:1
so has part: feature:282574-282612:1:exon
so has part: feature:283164-283344:1:exon
so has part: feature:284495-284807:1:exon
so has part: feature:285476-285650:1:exon

XP_032835886.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:282574-282612:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:283164-283344:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:284495-284807:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:285476-285650:1:exon

LOC116957694
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: LOC116957694
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(296423..306398)
location: region:296423-306398:-1
so has part: feature:296423-306398:-1:exon
subclass of: SO_0000010

116957694
type: Gene
SIO_000068: ncbigene

position:296423:-1
position: 296423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:306398:-1
position: 306398
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:296423-306398:-1:exon

LOC116957694
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: LOC116957694
product: speckle-type POZ protein-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins, and 82% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032980007.1
SIO_010081: LOC116957694
subclass of: SO_0000673
so part of: LOC116957694
location: complement(join(296423..297634,297787..297941,298965..299087,299515..299570,300980..301157,301943..302070,305289..305441,305624..305745,306308..306398))
location: region:296423-306398:-1
so has part: feature:306308-306398:-1:exon
so has part: feature:305624-305745:-1:exon
so has part: feature:305289-305441:-1:exon
so has part: feature:301943-302070:-1:exon
so has part: feature:300980-301157:-1:exon
so has part: feature:299515-299570:-1:exon
so has part: feature:298965-299087:-1:exon
so has part: feature:297787-297941:-1:exon
so has part: feature:296423-297634:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:306308-306398:-1:exon

position:306308:-1
position: 306308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:305624-305745:-1:exon

position:305624:-1
position: 305624
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:305745:-1
position: 305745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:305289-305441:-1:exon

position:305289:-1
position: 305289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:305441:-1
position: 305441
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:301943-302070:-1:exon

position:301943:-1
position: 301943
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:302070:-1
position: 302070
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:300980-301157:-1:exon

position:300980:-1
position: 300980
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:301157:-1
position: 301157
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:299515-299570:-1:exon

position:299515:-1
position: 299515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:299570:-1
position: 299570
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:298965-299087:-1:exon

position:298965:-1
position: 298965
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:299087:-1
position: 299087
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:297787-297941:-1:exon

position:297787:-1
position: 297787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:297941:-1
position: 297941
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:296423-297634:-1:exon

position:297634:-1
position: 297634
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116957694
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: LOC116957694
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: speckle-type POZ protein-like
translation: MSRAPSPPPPSEMSNAPIAESWCYTQVKVVKFSYMWTINNFSFCREEMGQVLKSSTFSAGTNDTLKWCLRINPEGLDEESKDYLSLYLVLVSCPKSEVYAKFKISILNAKGEETKAMESPRAYRFVQGKDWGFKKFIRRDFLLDESNSLLPDNKLTLFGEVSVVQDSVNISGQSSMSTLIVPDCRLAVDFGEIWDNSRFTDCLLRVGGQEFKAHKAVLAGRSLVFNAMFEHEMEESKKNRVEINDVEPDVFKEMMSFVYTGRAPNLEKMADELLAAADKYALERLKVMCEEALCTNLSVENVVETLILADLHSAEQLKARAIDFIINRQVYHAMDVMETAGWKSMVLSRPHLVADAFRALATAQSPQLGPPCKRLKQT
SIO_010081: LOC116957694
subclass of: SO_0000673
so part of: LOC116957694
location: complement(join(297490..297634,297787..297941,298965..299087,299515..299570,300980..301157,301943..302070,305289..305441,305624..305745,306308..306385))
location: region:297490-306385:-1
so has part: feature:306308-306385:-1:exon
so has part: feature:305624-305745:-1:exon
so has part: feature:305289-305441:-1:exon
so has part: feature:301943-302070:-1:exon
so has part: feature:300980-301157:-1:exon
so has part: feature:299515-299570:-1:exon
so has part: feature:298965-299087:-1:exon
so has part: feature:297787-297941:-1:exon
so has part: feature:297490-297634:-1:exon

XP_032835898.1
type: Protein
SIO_000068: ncbiprotein

position:297490:-1
position: 297490
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:306385:-1
position: 306385
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:306308-306385:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:305624-305745:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:305289-305441:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:301943-302070:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:300980-301157:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:299515-299570:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:298965-299087:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:297787-297941:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:297490-297634:-1:exon

LOC116957681
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: LOC116957681
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 425300..427499
location: region:425300-427499:1
so has part: feature:425300-427499:1:exon
subclass of: SO_0000011

116957681
type: Gene
SIO_000068: ncbigene

position:425300:1
position: 425300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:427499:1
position: 427499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:425300-427499:1:exon

LOC116957681
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 7757
nc RNA class: lncRNA
gene: LOC116957681
product: uncharacterized LOC116957681
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_004405225.1
SIO_010081: LOC116957681
subclass of: SO_0000673
so part of: LOC116957681
location: join(425300..425910,427414..427499)
location: region:425300-427499:1
so has part: feature:425300-425910:1:exon
so has part: feature:427414-427499:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:425300-425910:1:exon

position:425910:1
position: 425910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:427414-427499:1:exon

position:427414:1
position: 427414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116957685
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: LOC116957685
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 432478..440797
location: region:432478-440797:1
so has part: feature:432478-440797:1:exon
subclass of: SO_0000010

116957685
type: Gene
SIO_000068: ncbigene

position:432478:1
position: 432478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:440797:1
position: 440797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:432478-440797:1:exon

LOC116957685
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: LOC116957685
product: myosin heavy chain, skeletal muscle-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 89% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032979996.1
SIO_010081: LOC116957685
subclass of: SO_0000673
so part of: LOC116957685
location: join(432478..432638,435783..435850,437166..437239,437749..437807,437940..438009,438161..438234,438890..438998,439139..439233,440140..440344,440709..440797)
location: region:432478-440797:1
so has part: feature:432478-432638:1:exon
so has part: feature:435783-435850:1:exon
so has part: feature:437166-437239:1:exon
so has part: feature:437749-437807:1:exon
so has part: feature:437940-438009:1:exon
so has part: feature:438161-438234:1:exon
so has part: feature:438890-438998:1:exon
so has part: feature:439139-439233:1:exon
so has part: feature:440140-440344:1:exon
so has part: feature:440709-440797:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:432478-432638:1:exon

position:432638:1
position: 432638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:435783-435850:1:exon

position:435783:1
position: 435783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:435850:1
position: 435850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:437166-437239:1:exon

position:437166:1
position: 437166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:437239:1
position: 437239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:437749-437807:1:exon

position:437749:1
position: 437749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:437807:1
position: 437807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:437940-438009:1:exon

position:437940:1
position: 437940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:438009:1
position: 438009
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:438161-438234:1:exon

position:438161:1
position: 438161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:438234:1
position: 438234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:438890-438998:1:exon

position:438890:1
position: 438890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:438998:1
position: 438998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:439139-439233:1:exon

position:439139:1
position: 439139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:439233:1
position: 439233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:440140-440344:1:exon

position:440140:1
position: 440140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:440344:1
position: 440344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:440709-440797:1:exon

position:440709:1
position: 440709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116957685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: LOC116957685
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: myosin heavy chain, skeletal muscle-like
translation: MNKLNMWKVRVHSELSKKEEAVRMAQETADALQKSTRQTQLENVHLSAQLQDVIDIKGDLMEKIRATRQMCDDLKGQSSSVQQTLTRAETEQEQVEAVHSSLKAELKTFAVTFSELNLKSQNDKNIALGKVEAAVDAMGRARWDFVNKLTIKESQAKEMSELLELKNEELKTASQKLQDSIESCARLEETERNFQARLEQTQKESGTLKLEVNRRREVESTLQAGMQNAERSFAEKEREFTASTAELRLSCDKLQHERRDLNVIVQNLEKANEELTAAASQRQVVNFYNTARKPHGGVLHSFSEVAEGEGGSGGVGHVRR
SIO_010081: LOC116957685
subclass of: SO_0000673
so part of: LOC116957685
location: join(432519..432638,435783..435850,437166..437239,437749..437807,437940..438009,438161..438234,438890..438998,439139..439233,440140..440344,440709..440797)
location: region:432519-440797:1
so has part: feature:432519-432638:1:exon
so has part: feature:435783-435850:1:exon
so has part: feature:437166-437239:1:exon
so has part: feature:437749-437807:1:exon
so has part: feature:437940-438009:1:exon
so has part: feature:438161-438234:1:exon
so has part: feature:438890-438998:1:exon
so has part: feature:439139-439233:1:exon
so has part: feature:440140-440344:1:exon
so has part: feature:440709-440797:1:exon

XP_032835887.1
type: Protein
SIO_000068: ncbiprotein

position:432519:1
position: 432519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:432519-432638:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:435783-435850:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:437166-437239:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:437749-437807:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:437940-438009:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:438161-438234:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:438890-438998:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:439139-439233:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:440140-440344:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:440709-440797:1:exon

LOC116957682
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: LOC116957682
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 445705..448931
location: region:445705-448931:1
so has part: feature:445705-448931:1:exon
subclass of: SO_0000011

116957682
type: Gene
SIO_000068: ncbigene

position:445705:1
position: 445705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:448931:1
position: 448931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:445705-448931:1:exon

LOC116957682
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 7757
nc RNA class: lncRNA
gene: LOC116957682
product: uncharacterized LOC116957682
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_004405226.1
SIO_010081: LOC116957682
subclass of: SO_0000673
so part of: LOC116957682
location: join(445705..445802,447060..447177,447274..447344,448857..448931)
location: region:445705-448931:1
so has part: feature:445705-445802:1:exon
so has part: feature:447060-447177:1:exon
so has part: feature:447274-447344:1:exon
so has part: feature:448857-448931:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:445705-445802:1:exon

position:445802:1
position: 445802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:447060-447177:1:exon

position:447060:1
position: 447060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:447177:1
position: 447177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:447274-447344:1:exon

position:447274:1
position: 447274
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:447344:1
position: 447344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:448857-448931:1:exon

position:448857:1
position: 448857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116957686
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: LOC116957686
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(464973..487031)
location: region:464973-487031:-1
so has part: feature:464973-487031:-1:exon
subclass of: SO_0000010

116957686
type: Gene
SIO_000068: ncbigene

position:464973:-1
position: 464973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:487031:-1
position: 487031
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:464973-487031:-1:exon

LOC116957686
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: LOC116957686
product: hydroxylysine kinase-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 61% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032979997.1
SIO_010081: LOC116957686
subclass of: SO_0000673
so part of: LOC116957686
location: complement(join(464973..465151,471476..471558,480205..480366,480500..480815,481965..482145,483567..483709,486707..487031))
location: region:464973-487031:-1
so has part: feature:486707-487031:-1:exon
so has part: feature:483567-483709:-1:exon
so has part: feature:481965-482145:-1:exon
so has part: feature:480500-480815:-1:exon
so has part: feature:480205-480366:-1:exon
so has part: feature:471476-471558:-1:exon
so has part: feature:464973-465151:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:486707-487031:-1:exon

position:486707:-1
position: 486707
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:483567-483709:-1:exon

position:483567:-1
position: 483567
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:483709:-1
position: 483709
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:481965-482145:-1:exon

position:481965:-1
position: 481965
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:482145:-1
position: 482145
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:480500-480815:-1:exon

position:480500:-1
position: 480500
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:480815:-1
position: 480815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:480205-480366:-1:exon

position:480205:-1
position: 480205
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:480366:-1
position: 480366
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:471476-471558:-1:exon

position:471476:-1
position: 471476
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:471558:-1
position: 471558
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:464973-465151:-1:exon

position:465151:-1
position: 465151
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116957686
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: LOC116957686
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: hydroxylysine kinase-like
translation: MQAAPQDDGREHEKPCLSESRAAELVERLYGVSVAGVSPLASYVDQNYRVLARDGRQFVLKVTNTRDSQRPQMLEVQMAMMSFLWERGFPMQEVVDNVSGKIMSLENIDCGEGEKEFNVRLLTYLPGVPLSRVLADGSLYYQVGKLAASIHQALQQFEHPFLHSLQRDDFIWNLSNTHLLESYLFTLDGDPNQGLVREVIAKFREEIQPNLHKFTRCIIHGDFNDDNILVQEVAAGSEQQQQQQQGPKSAEGAPRHRISGVVDLNSMMFGYHVYDLAMAIMYMMVESGEAMEAGGHVLAGYESVQALTEDERRAVYFLVACRFCQSLVMARYTILRYPQNAYYLLITARTGWVKLRELWTRGLEDMQRLWSDVAARCGAQGRNSLARLDRLCISPDGANLLGERRLPGGNAGTILPRFTFLVDAAFLETSLACDKRTHRRRHDNTAIVNGRKDAGTQTQRRS
SIO_010081: LOC116957686
subclass of: SO_0000673
so part of: LOC116957686
location: complement(join(464973..465151,471476..471558,480205..480366,480500..480815,481965..482145,483567..483709,486707..487031))
location: region:464973-487031:-1
so has part: feature:486707-487031:-1:exon
so has part: feature:483567-483709:-1:exon
so has part: feature:481965-482145:-1:exon
so has part: feature:480500-480815:-1:exon
so has part: feature:480205-480366:-1:exon
so has part: feature:471476-471558:-1:exon
so has part: feature:464973-465151:-1:exon

XP_032835888.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:486707-487031:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:483567-483709:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:481965-482145:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:480500-480815:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:480205-480366:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:471476-471558:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:464973-465151:-1:exon

LOC116957687
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: LOC116957687
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 493422..535356
location: region:493422-535356:1
so has part: feature:493422-535356:1:exon
subclass of: SO_0000010

116957687
type: Gene
SIO_000068: ncbigene

position:493422:1
position: 493422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:535356:1
position: 535356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:493422-535356:1:exon

LOC116957687
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: LOC116957687
product: cadherin-4-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transcript id: XM_032979998.1
SIO_010081: LOC116957687
subclass of: SO_0000673
so part of: LOC116957687
location: join(493422..493553,497420..497470,498245..498397,499665..499764,505830..505999,509992..510121,534016..534140,535231..535356)
location: region:493422-535356:1
so has part: feature:493422-493553:1:exon
so has part: feature:497420-497470:1:exon
so has part: feature:498245-498397:1:exon
so has part: feature:499665-499764:1:exon
so has part: feature:505830-505999:1:exon
so has part: feature:509992-510121:1:exon
so has part: feature:534016-534140:1:exon
so has part: feature:535231-535356:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:493422-493553:1:exon

position:493553:1
position: 493553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:497420-497470:1:exon

position:497420:1
position: 497420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:497470:1
position: 497470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:498245-498397:1:exon

position:498245:1
position: 498245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:498397:1
position: 498397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:499665-499764:1:exon

position:499665:1
position: 499665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:499764:1
position: 499764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:505830-505999:1:exon

position:505830:1
position: 505830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:505999:1
position: 505999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:509992-510121:1:exon

position:509992:1
position: 509992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:510121:1
position: 510121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:534016-534140:1:exon

position:534016:1
position: 534016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:534140:1
position: 534140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:535231-535356:1:exon

position:535231:1
position: 535231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116957687
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: LOC116957687
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cadherin-4-like
translation: MSSSISECGTEERTPWVRLMERRVMMLLLLAVAAVALITEQQSQVSVPENDRGPFPKLLVQVKSDTAGVDIRYALLGDGADQHPVGLFVMDTVTGRVSVTRSLDREVIAQYRPVDLVVDVIDVNDNRPTFAKKVFHSSVVEGSPRGTFVMRVVASDMDDPLTLNGAIRYHIVLQVPMVTAHRVFTIDRFTGIITNTVRLDRERVAHFSLVVMASDMEGDANIGLSTTATAIVTITDINDHAPEFTTTVANSASKGVREPLATAKMVNKKRKSPYRSDFESSEGMDLTADEQLRESASGAMPPKRTGKARAAGKVRVSDVFLMWMSRFR
SIO_010081: LOC116957687
subclass of: SO_0000673
so part of: LOC116957687
location: join(493422..493553,497420..497470,498245..498397,499665..499764,505830..505999,509992..510121,534016..534140,535231..535356)
location: region:493422-535356:1
so has part: feature:493422-493553:1:exon
so has part: feature:497420-497470:1:exon
so has part: feature:498245-498397:1:exon
so has part: feature:499665-499764:1:exon
so has part: feature:505830-505999:1:exon
so has part: feature:509992-510121:1:exon
so has part: feature:534016-534140:1:exon
so has part: feature:535231-535356:1:exon

XP_032835889.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:493422-493553:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:497420-497470:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:498245-498397:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:499665-499764:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:505830-505999:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:509992-510121:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:534016-534140:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:535231-535356:1:exon

LOC116957688
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: LOC116957688
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(552636..565047)
location: region:552636-565047:-1
so has part: feature:552636-565047:-1:exon
subclass of: SO_0000010

116957688
type: Gene
SIO_000068: ncbigene

position:552636:-1
position: 552636
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:565047:-1
position: 565047
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:552636-565047:-1:exon

LOC116957688
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: LOC116957688
product: hydroxylysine kinase-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 79% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032980001.1
SIO_010081: LOC116957688
subclass of: SO_0000673
so part of: LOC116957688
location: complement(join(552636..552821,553495..553812,554935..555115,561561..561703,564723..565047))
location: region:552636-565047:-1
so has part: feature:564723-565047:-1:exon
so has part: feature:561561-561703:-1:exon
so has part: feature:554935-555115:-1:exon
so has part: feature:553495-553812:-1:exon
so has part: feature:552636-552821:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:564723-565047:-1:exon

position:564723:-1
position: 564723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:561561-561703:-1:exon

position:561561:-1
position: 561561
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:561703:-1
position: 561703
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:554935-555115:-1:exon

position:554935:-1
position: 554935
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:555115:-1
position: 555115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:553495-553812:-1:exon

position:553495:-1
position: 553495
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:553812:-1
position: 553812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:552636-552821:-1:exon

position:552821:-1
position: 552821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116957688
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: LOC116957688
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: hydroxylysine kinase-like
translation: MQAAPQDDGHEHQKPCLSESRAAELVERLYGVSVAGVSPLASYVDQNYRVLARDGRQFVLKVTNTRDSQRPQLLEVQMAMMRFLRERGFPMQEVVDNVSGKIMSLESIDCGEGEKEFNVRLLTYLPGVPLSRVLADGSLYYQVGKLAASIHQALQQFEHPFLHSLQRDDFIWNLSNTHLLESYLFTLDGDPNQGLVREVIAKFREEIQPNLHKFTRCIIHGDFNDDNILVQEVTAGSEQQQQQQQGPKSAEGAPRHRVSGVVDLNSMMFGYHVYDLAMAIMYMMVESGEAMEAGGHVLAGYRACRPSAEDERRAVYFLVACRFCQSLVMARYTILRYPQNADYLLITARTGWVKLRELWTRGLEDMQRLWSDVAARYRN
SIO_010081: LOC116957688
subclass of: SO_0000673
so part of: LOC116957688
location: complement(join(552647..552821,553495..553812,554935..555115,561561..561703,564723..565047))
location: region:552647-565047:-1
so has part: feature:564723-565047:-1:exon
so has part: feature:561561-561703:-1:exon
so has part: feature:554935-555115:-1:exon
so has part: feature:553495-553812:-1:exon
so has part: feature:552647-552821:-1:exon

XP_032835892.1
type: Protein
SIO_000068: ncbiprotein

position:552647:-1
position: 552647
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:564723-565047:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:561561-561703:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:554935-555115:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:553495-553812:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:552647-552821:-1:exon

LOC116957695
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: LOC116957695
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 571678..580831
location: region:571678-580831:1
so has part: feature:571678-580831:1:exon
subclass of: SO_0000010

116957695
type: Gene
SIO_000068: ncbigene

position:571678:1
position: 571678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:580831:1
position: 580831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:571678-580831:1:exon

LOC116957695
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: LOC116957695
product: speckle-type POZ protein-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins, and 70% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032980008.1
SIO_010081: LOC116957695
subclass of: SO_0000673
so part of: LOC116957695
location: join(571678..571763,572327..572448,572619..572770,575995..576122,576906..577083,578478..578533,578961..579083,580107..580261,580415..580831)
location: region:571678-580831:1
so has part: feature:571678-571763:1:exon
so has part: feature:572327-572448:1:exon
so has part: feature:572619-572770:1:exon
so has part: feature:575995-576122:1:exon
so has part: feature:576906-577083:1:exon
so has part: feature:578478-578533:1:exon
so has part: feature:578961-579083:1:exon
so has part: feature:580107-580261:1:exon
so has part: feature:580415-580831:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:571678-571763:1:exon

position:571763:1
position: 571763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:572327-572448:1:exon

position:572327:1
position: 572327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:572448:1
position: 572448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:572619-572770:1:exon

position:572619:1
position: 572619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:572770:1
position: 572770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:575995-576122:1:exon

position:575995:1
position: 575995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:576122:1
position: 576122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:576906-577083:1:exon

position:576906:1
position: 576906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:577083:1
position: 577083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:578478-578533:1:exon

position:578478:1
position: 578478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:578533:1
position: 578533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:578961-579083:1:exon

position:578961:1
position: 578961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:579083:1
position: 579083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:580107-580261:1:exon

position:580107:1
position: 580107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:580261:1
position: 580261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:580415-580831:1:exon

position:580415:1
position: 580415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116957695
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: LOC116957695
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: speckle-type POZ protein-like
translation: MSRAPSPPPPSEMSNAPIAESWCYTQVKVVKFSYMWTINNFSFCRKEMGEVLKSSTFSAGTNDTLKWCLRIHPKGLDEESKDYLSLYLLLVSCPKNEVYAKFKVSILNAKGEETKAMESPRAYRFFQGKDWGFKKFIRRNFLLDESNSLLPDNKLTLFGEVSVVQDSVNISGQSSMSTLKVPDCRLAVDFGEIWDNSRFTDCLLRVGGQEFKAHKAVLAGRSLVFNAMFEHEMEERKKNRVEINDVDPDVFKEMMSFVYTGRAPNLEKMADELLAAADKYALERLKVMCEEALCTNLSVENVAETLILADLHSAEQLKARAIDFIINRQVYHAMDVMETAGWKSMVLSRPHLVADAFRALATAQSPQLGPPCKRLKQT
SIO_010081: LOC116957695
subclass of: SO_0000673
so part of: LOC116957695
location: join(571686..571763,572327..572448,572619..572770,575995..576122,576906..577083,578478..578533,578961..579083,580107..580261,580415..580559)
location: region:571686-580559:1
so has part: feature:571686-571763:1:exon
so has part: feature:572327-572448:1:exon
so has part: feature:572619-572770:1:exon
so has part: feature:575995-576122:1:exon
so has part: feature:576906-577083:1:exon
so has part: feature:578478-578533:1:exon
so has part: feature:578961-579083:1:exon
so has part: feature:580107-580261:1:exon
so has part: feature:580415-580559:1:exon

XP_032835899.1
type: Protein
SIO_000068: ncbiprotein

position:571686:1
position: 571686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:580559:1
position: 580559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:571686-571763:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:572327-572448:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:572619-572770:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:575995-576122:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:576906-577083:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:578478-578533:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:578961-579083:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:580107-580261:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:580415-580559:1:exon

LOC116957689
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: LOC116957689
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(591133..600738)
location: region:591133-600738:-1
so has part: feature:591133-600738:-1:exon
subclass of: SO_0000010

116957689
type: Gene
SIO_000068: ncbigene

position:591133:-1
position: 591133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:600738:-1
position: 600738
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:591133-600738:-1:exon

LOC116957689
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: LOC116957689
product: hydroxylysine kinase-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 88% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032980002.1
SIO_010081: LOC116957689
subclass of: SO_0000673
so part of: LOC116957689
location: complement(join(591133..591318,591987..592296,593443..593623,597279..597421,600414..600738))
location: region:591133-600738:-1
so has part: feature:600414-600738:-1:exon
so has part: feature:597279-597421:-1:exon
so has part: feature:593443-593623:-1:exon
so has part: feature:591987-592296:-1:exon
so has part: feature:591133-591318:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:600414-600738:-1:exon

position:600414:-1
position: 600414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:597279-597421:-1:exon

position:597279:-1
position: 597279
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:597421:-1
position: 597421
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:593443-593623:-1:exon

position:593443:-1
position: 593443
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:593623:-1
position: 593623
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:591987-592296:-1:exon

position:591987:-1
position: 591987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:592296:-1
position: 592296
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:591133-591318:-1:exon

position:591318:-1
position: 591318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116957689
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: LOC116957689
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: hydroxylysine kinase-like
translation: MQVAPQDDGHEHEKPCISESRAAKLVERLYGVSVAGVSPLASYVDQNYHVLARDGRQFVLKVTNTRDSQRPQMLEVQMAMMRFLREMGFPMQEVVDNVSGKIMSLESIDCGEGEKEFNVRLLTYLPGVPLSRVLADGSLYYQVGKLAASIHQALQQFEHPFLHSLQRDDFIWNLSNTHLLEPYLFTLDGDPNQGLVREVIAKFREEIQPNLHKFTRCIIHGDFNDDNILVQEVAAGSEQQQQQGPKSAEGAPRHRVSGIVDLNSMMFGYHVYDLAMAIMYMMVESGEAMEAGGHVLAGYESVQALTEDERRAVYFLVACRFCQSLVMARYTILRYPQNADYLLITARTGWVKLRELWTRGLEDMQRLWSDVAARYRN
SIO_010081: LOC116957689
subclass of: SO_0000673
so part of: LOC116957689
location: complement(join(591144..591318,591987..592296,593443..593623,597279..597421,600414..600738))
location: region:591144-600738:-1
so has part: feature:600414-600738:-1:exon
so has part: feature:597279-597421:-1:exon
so has part: feature:593443-593623:-1:exon
so has part: feature:591987-592296:-1:exon
so has part: feature:591144-591318:-1:exon

XP_032835893.1
type: Protein
SIO_000068: ncbiprotein

position:591144:-1
position: 591144
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:600414-600738:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:597279-597421:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:593443-593623:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:591987-592296:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:591144-591318:-1:exon

LOC116957690
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: LOC116957690
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(613459..619142)
location: region:613459-619142:-1
so has part: feature:613459-619142:-1:exon

116957690
type: Gene
SIO_000068: ncbigene

position:613459:-1
position: 613459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:619142:-1
position: 619142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:613459-619142:-1:exon

LOC116957690
type: Exon
subclass of: SO_0000147
RO_0002162: 7757
gene: LOC116957690
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 57% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116957690
subclass of: SO_0000673
so part of: LOC116957690
location: complement(613459..613636)
location: region:613459-613636:-1
so has part: feature:613459-613636:-1:exon

position:613636:-1
position: 613636
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:613459-613636:-1:exon

LOC116957690
type: Exon
subclass of: SO_0000147
RO_0002162: 7757
gene: LOC116957690
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 57% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116957690
subclass of: SO_0000673
so part of: LOC116957690
location: complement(613799..613944)
location: region:613799-613944:-1
so has part: feature:613799-613944:-1:exon

position:613799:-1
position: 613799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:613944:-1
position: 613944
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:613799-613944:-1:exon

LOC116957690
type: Exon
subclass of: SO_0000147
RO_0002162: 7757
gene: LOC116957690
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 57% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116957690
subclass of: SO_0000673
so part of: LOC116957690
location: complement(614968..615090)
location: region:614968-615090:-1
so has part: feature:614968-615090:-1:exon

position:614968:-1
position: 614968
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:615090:-1
position: 615090
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:614968-615090:-1:exon

LOC116957690
type: Exon
subclass of: SO_0000147
RO_0002162: 7757
gene: LOC116957690
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 57% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116957690
subclass of: SO_0000673
so part of: LOC116957690
location: complement(615523..615578)
location: region:615523-615578:-1
so has part: feature:615523-615578:-1:exon

position:615523:-1
position: 615523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:615578:-1
position: 615578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:615523-615578:-1:exon

LOC116957690
type: Exon
subclass of: SO_0000147
RO_0002162: 7757
gene: LOC116957690
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 57% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116957690
subclass of: SO_0000673
so part of: LOC116957690
location: complement(616988..617165)
location: region:616988-617165:-1
so has part: feature:616988-617165:-1:exon

position:616988:-1
position: 616988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:617165:-1
position: 617165
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:616988-617165:-1:exon

LOC116957690
type: Exon
subclass of: SO_0000147
RO_0002162: 7757
gene: LOC116957690
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 57% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116957690
subclass of: SO_0000673
so part of: LOC116957690
location: complement(617949..618198)
location: region:617949-618198:-1
so has part: feature:617949-618198:-1:exon

position:617949:-1
position: 617949
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:618198:-1
position: 618198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:617949-618198:-1:exon

LOC116957690
type: Exon
subclass of: SO_0000147
RO_0002162: 7757
gene: LOC116957690
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 57% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116957690
subclass of: SO_0000673
so part of: LOC116957690
location: complement(618382..618503)
location: region:618382-618503:-1
so has part: feature:618382-618503:-1:exon

position:618382:-1
position: 618382
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:618503:-1
position: 618503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:618382-618503:-1:exon

LOC116957690
type: Exon
subclass of: SO_0000147
RO_0002162: 7757
gene: LOC116957690
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 57% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116957690
subclass of: SO_0000673
so part of: LOC116957690
location: complement(619065..619142)
location: region:619065-619142:-1
so has part: feature:619065-619142:-1:exon

position:619065:-1
position: 619065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:619065-619142:-1:exon

LOC116957691
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: LOC116957691
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(635158..635968)
location: region:635158-635968:-1
so has part: feature:635158-635968:-1:exon
subclass of: SO_0000010

116957691
type: Gene
SIO_000068: ncbigene

position:635158:-1
position: 635158
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:635968:-1
position: 635968
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:635158-635968:-1:exon

LOC116957691
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: LOC116957691
product: hydroxylysine kinase-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 51% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032980003.1
SIO_010081: LOC116957691
subclass of: SO_0000673
so part of: LOC116957691
location: complement(join(635158..635177,635644..635968))
location: region:635158-635968:-1
so has part: feature:635644-635968:-1:exon
so has part: feature:635158-635177:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:635644-635968:-1:exon

position:635644:-1
position: 635644
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:635158-635177:-1:exon

position:635177:-1
position: 635177
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116957691
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: LOC116957691
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: hydroxylysine kinase-like
translation: MQAAPQDDGREHEKPCLSESRAAKLVERLYGVSVTGMSPLASYVDQNYRVLARDGRQFVLKVTNTRDSQRPQLLEVQMAMMRFLRERGFPMQEVVDNVSGKIMSLESIAPRSSL
SIO_010081: LOC116957691
subclass of: SO_0000673
so part of: LOC116957691
location: complement(join(635158..635177,635644..635968))
location: region:635158-635968:-1
so has part: feature:635644-635968:-1:exon
so has part: feature:635158-635177:-1:exon

XP_032835894.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:635644-635968:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:635158-635177:-1:exon

LOC116957693
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: LOC116957693
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 722621..723808
location: region:722621-723808:1
so has part: feature:722621-723808:1:exon
subclass of: SO_0000010

116957693
type: Gene
SIO_000068: ncbigene

position:722621:1
position: 722621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:723808:1
position: 723808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:722621-723808:1:exon

LOC116957693
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: LOC116957693
product: speckle-type POZ protein B-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_032980005.1
SIO_010081: LOC116957693
subclass of: SO_0000673
so part of: LOC116957693
location: join(722621..722713,723279..723400,723574..723808)
location: region:722621-723808:1
so has part: feature:722621-722713:1:exon
so has part: feature:723279-723400:1:exon
so has part: feature:723574-723808:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:722621-722713:1:exon

position:722713:1
position: 722713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:723279-723400:1:exon

position:723279:1
position: 723279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:723400:1
position: 723400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:723574-723808:1:exon

position:723574:1
position: 723574
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116957693
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: LOC116957693
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: speckle-type POZ protein B-like
translation: MSRAPSPPPPSEMSNAPIAESWCYTQVKVVKFSYMWTINNFSFCREEMGQVLKSSTFSAGTNDTLKWCLRIHPKGLDEESKDYLSLYLLLVSCPKSEVYAKFKVSILNAKGEETKAMGETTCI
SIO_010081: LOC116957693
subclass of: SO_0000673
so part of: LOC116957693
location: join(722636..722713,723279..723400,723574..723745)
location: region:722636-723745:1
so has part: feature:722636-722713:1:exon
so has part: feature:723279-723400:1:exon
so has part: feature:723574-723745:1:exon

XP_032835896.1
type: Protein
SIO_000068: ncbiprotein

position:722636:1
position: 722636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:723745:1
position: 723745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:722636-722713:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:723279-723400:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:723574-723745:1:exon

LOC116957692
type: Gene
subclass of: SO_0000704
RO_0002162: 7757
gene: LOC116957692
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1083120..1089977)
location: region:1083120-1089977:-1
so has part: feature:1083120-1089977:-1:exon
subclass of: SO_0000010

116957692
type: Gene
SIO_000068: ncbigene

position:1083120:-1
position: 1083120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1089977:-1
position: 1089977
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1083120-1089977:-1:exon

LOC116957692
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 7757
gene: LOC116957692
product: volume-regulated anion channel subunit LRRC8C-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 56% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032980004.1
SIO_010081: LOC116957692
subclass of: SO_0000673
so part of: LOC116957692
location: complement(join(1083120..1083364,1083541..1083865,1084062..1084211,1084618..1084776,1085600..1085747,1086011..1086520,1087946..1088250,1089260..1089373,1089834..1089977))
location: region:1083120-1089977:-1
so has part: feature:1089834-1089977:-1:exon
so has part: feature:1089260-1089373:-1:exon
so has part: feature:1087946-1088250:-1:exon
so has part: feature:1086011-1086520:-1:exon
so has part: feature:1085600-1085747:-1:exon
so has part: feature:1084618-1084776:-1:exon
so has part: feature:1084062-1084211:-1:exon
so has part: feature:1083541-1083865:-1:exon
so has part: feature:1083120-1083364:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1089834-1089977:-1:exon

position:1089834:-1
position: 1089834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1089260-1089373:-1:exon

position:1089260:-1
position: 1089260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1089373:-1
position: 1089373
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1087946-1088250:-1:exon

position:1087946:-1
position: 1087946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1088250:-1
position: 1088250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1086011-1086520:-1:exon

position:1086011:-1
position: 1086011
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1086520:-1
position: 1086520
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1085600-1085747:-1:exon

position:1085600:-1
position: 1085600
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1085747:-1
position: 1085747
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1084618-1084776:-1:exon

position:1084618:-1
position: 1084618
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1084776:-1
position: 1084776
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1084062-1084211:-1:exon

position:1084062:-1
position: 1084062
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1084211:-1
position: 1084211
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1083541-1083865:-1:exon

position:1083541:-1
position: 1083541
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1083865:-1
position: 1083865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1083120-1083364:-1:exon

position:1083364:-1
position: 1083364
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116957692
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 7757
gene: LOC116957692
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: volume-regulated anion channel subunit LRRC8C-like
translation: MIPIGALTSSFSLEGHQDLKILQPWWDVLCDMLSVPMFMIGIFAGMLQNMNERILCVPVPSGFDVDLKEWNETVLRDLVANPRAHRTGFDQYQYRLINQFCYDNAVLWISKYFPHLVVLHTLVLTATRNFWFRFPETSSKIEHFVSVLGKCMDSQWTTHAVHEAALDGVATTAAALRPPLLATAGSCSDPRSGEIPMEKLPPESPPGPPRPSVQFVDLGEAAPPDRSPPEQSEDRRTPSDDRILDKKEGEQAKALFEKVKKLRAHTEAGGGLHRIYVLQTAARLLQALVVLAYTGYACPNMRYHIHCVEGEYITGYRNFYCVHGLWRIFRMMWMAYATTMCVYALTCAYVVYWVVTCRLKEYSFAETRQETGVDDIPDVRNDFAFLLHLVDKYDPCYASKFSVFLSEVSENKLRQVNVDQVWTLSHLTGLLEINAQGESELRLCKLAAVPVDTYRLTQIQVLTLDSMHGVTLGAAVVQLVNLHQLRLLNCTVSVDNRALAFLSEELHQLEVKFAVKAEVPGWLREMRHLEELSLEGPLTPALLKPLGGLRRLRGLRLTTSVARLPPGLAAVASGGVRSFALDNGGVRLESPAPLSKLRGLETLRLTRCGLEPAELPRPAARGGGAVPALLRWHASAARAHDMLTMRSSSCTCTSALPRVASQLAGDGGGAAFCTLATRSGRGNVTAGGRGSAKPEGGPG
SIO_010081: LOC116957692
subclass of: SO_0000673
so part of: LOC116957692
location: complement(join(1083120..1083364,1083541..1083865,1084062..1084211,1084618..1084776,1085600..1085747,1086011..1086520,1087946..1088250,1089260..1089373,1089834..1089977))
location: region:1083120-1089977:-1
so has part: feature:1089834-1089977:-1:exon
so has part: feature:1089260-1089373:-1:exon
so has part: feature:1087946-1088250:-1:exon
so has part: feature:1086011-1086520:-1:exon
so has part: feature:1085600-1085747:-1:exon
so has part: feature:1084618-1084776:-1:exon
so has part: feature:1084062-1084211:-1:exon
so has part: feature:1083541-1083865:-1:exon
so has part: feature:1083120-1083364:-1:exon

XP_032835895.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1089834-1089977:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1089260-1089373:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1087946-1088250:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1086011-1086520:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1085600-1085747:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1084618-1084776:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1084062-1084211:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1083541-1083865:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1083120-1083364:-1:exon