Ciona intestinalis B CG-2006 mitochondrion, complete genome.
type: Entry
definition: Ciona intestinalis B CG-2006 mitochondrion, complete genome.
sequence version: NC_017929.1
sequence date: 2023-04-03
sequence: sequence
division: INV
label: NC_017929.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
keyword: ATPase subunit 6
keyword: ATPase subunit 8
keyword: atpase6 gene
keyword: atpase8 gene
keyword: complete genome
keyword: cox1 gene
keyword: cox2 gene
keyword: cox3 gene
keyword: cytb gene
keyword: cytochrome b
keyword: cytochrome c oxidase subunit I
keyword: cytochrome c oxidase subunit II
keyword: cytochrome c oxidase subunit III
keyword: large subunit ribosomal RNA
keyword: nad1 gene
keyword: nad2 gene
keyword: nad3 gene
keyword: nad4 gene
keyword: nad4L gene
keyword: nad5 gene
keyword: nad6 gene
keyword: NADH dehydrogenase subunit 1
keyword: NADH dehydrogenase subunit 2
keyword: NADH dehydrogenase subunit 3
keyword: NADH dehydrogenase subunit 4
keyword: NADH dehydrogenase subunit 4L
keyword: NADH dehydrogenase subunit 5
keyword: NADH dehydrogenase subunit 6
keyword: rrnL gene
keyword: rrnS gene
keyword: small ribosomal RNA
keyword: transfer RNA-Ala
keyword: transfer RNA-Arg
keyword: transfer RNA-Asn
keyword: transfer RNA-Asp
keyword: transfer RNA-Cys
keyword: transfer RNA-Gln
keyword: transfer RNA-Glu
keyword: transfer RNA-Gly (AGR)
keyword: transfer RNA-Gly (GGN)
keyword: transfer RNA-His
keyword: transfer RNA-Ile
keyword: transfer RNA-Leu (CUN)
keyword: transfer RNA-Leu (UUR)
keyword: transfer RNA-Lys
keyword: transfer RNA-Met (AUA)
keyword: transfer RNA-Met (AUG)
keyword: transfer RNA-Phe
keyword: transfer RNA-Pro
keyword: transfer RNA-Ser (AGY)
keyword: transfer RNA-Ser (UCN)
keyword: transfer RNA-Thr
keyword: transfer RNA-Trp
keyword: transfer RNA-Tyr
keyword: transfer RNA-Val
keyword: tRNA-Ala gene
keyword: tRNA-Arg gene
keyword: tRNA-Asn gene
keyword: tRNA-Asp gene
keyword: tRNA-Cys gene
keyword: tRNA-Gln gene
keyword: tRNA-Glu gene
keyword: tRNA-Gly (AGR) gene
keyword: tRNA-Gly (GGN) gene
keyword: tRNA-His gene
keyword: tRNA-Ile gene
keyword: tRNA-Leu (CUN) gene
keyword: tRNA-Leu (UUR) gene

sequence
subclass of: SO_0000819
sequence length: 14591
topology: circular
so has quality: SO_0000988
location: 1..14591
location: region:1-14591:1
RO_0002162: 413601

NC_017929
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

tRNA-Lys gene

tRNA-Met (AUA) gene

tRNA-Met (AUG) gene

tRNA-Phe gene

tRNA-Pro gene

tRNA-Ser (AGY) gene

tRNA-Ser (UCN) gene

tRNA-Thr gene

tRNA-Trp gene

tRNA-Tyr gene

tRNA-Val gene

1
title: Mitogenomics reveals two cryptic species in Ciona intestinalis
author: Iannelli, F.
author: Pesole, G.
author: Sordino, P.
author: Gissi, C.
journal: Trends Genet.
volume: 23
issue: 9
pages: 419-422
year: 2007
pubmed: 17640763

17640763
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (16-MAY-2012) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Gissi, C.
journal: Submitted (17-JUL-2006) Gissi C., Scienze Biomolecolari e Biotecnologie, Universita di Milano, Via Celoria 26, 20133 Milano, ITALY

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14591:1
position: 14591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14591:1:source
so part of: sequence
organism: Ciona intestinalis B CG-2006
organelle: mitochondrion
mol type: genomic DNA
tissue type: syphon muscle
country: United Kingdom:Plymouth
note: a cryptic species of the morphospecies Ciona intestinalis

413601
type: Taxonomy
SIO_000068: taxonomy

rrnS
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: rrnS
so part of: sequence
location: 1..660
location: region:1-660:1
so has part: feature:1-660:1:exon
subclass of: SO_0000573

12977563
type: Gene
SIO_000068: ncbigene

position:660:1
position: 660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-660:1:exon

rrnS
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 413601
gene: rrnS
product: 12S ribosomal RNA
SIO_010081: rrnS
subclass of: SO_0000673
so part of: rrnS
location: 1..660
location: region:1-660:1
so has part: feature:1-660:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1-660:1:exon

trnW
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: trnW
so part of: sequence
location: 661..722
location: region:661-722:1
so has part: feature:661-722:1:exon
subclass of: SO_0000663

12977564
type: Gene
SIO_000068: ncbigene

position:661:1
position: 661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:722:1
position: 722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:661-722:1:exon

trnW
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 413601
gene: trnW
product: tRNA-Trp
SIO_010081: trnW
subclass of: SO_0000673
so part of: trnW
location: 661..722
location: region:661-722:1
so has part: feature:661-722:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:661-722:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: ND6
so part of: sequence
location: 723..1205
location: region:723-1205:1
so has part: feature:723-1205:1:exon
subclass of: SO_0000010

12977565
type: Gene
SIO_000068: ncbigene

position:723:1
position: 723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1205:1
position: 1205
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:723-1205:1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 413601
gene: ND6
codon start: 1
transl table: 13
product: NADH dehydrogenase subunit 6
translation: MLMFSVGGGDILYILMMLFFSMFLTVYSLYLILFSLIVMVILFFFFFYMKNMIFLGILMVLLYLGGLLMLFSYSSMLNSVKMVEDFQDNYGKFLMLIIVSYLSVKSIYHFLPFLGFMNNGIGLISGFSLYSFNFFFFVIGLVFLMFFLCLSIYFCLEKIY
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: 723..1205
location: region:723-1205:1
so has part: feature:723-1205:1:exon

YP_006341025.1
type: Protein
SIO_000068: ncbiprotein

A7M7Z5
type: GOA
SIO_000068: goa

IPR001457
type: InterPro
SIO_000068: interpro

A7M7Z5
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:723-1205:1:exon

trnG(GGN)
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: trnG(GGN)
so part of: sequence
location: 1212..1279
location: region:1212-1279:1
so has part: feature:1212-1279:1:exon
subclass of: SO_0000663

12977566
type: Gene
SIO_000068: ncbigene

position:1212:1
position: 1212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1279:1
position: 1279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1212-1279:1:exon

trnG(GGN)
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 413601
gene: trnG(GGN)
product: tRNA-Gly
codon recognized: GGN
SIO_010081: trnG(GGN)
subclass of: SO_0000673
so part of: trnG(GGN)
location: 1212..1279
location: region:1212-1279:1
so has part: feature:1212-1279:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1212-1279:1:exon

trnM(AUA)
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: trnM(AUA)
so part of: sequence
location: 1282..1344
location: region:1282-1344:1
so has part: feature:1282-1344:1:exon
subclass of: SO_0000663

12977567
type: Gene
SIO_000068: ncbigene

position:1282:1
position: 1282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1344:1
position: 1344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1282-1344:1:exon

trnM(AUA)
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 413601
gene: trnM(AUA)
product: tRNA-Met
codon recognized: AUA
SIO_010081: trnM(AUA)
subclass of: SO_0000673
so part of: trnM(AUA)
location: 1282..1344
location: region:1282-1344:1
so has part: feature:1282-1344:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1282-1344:1:exon

trnD
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: trnD
so part of: sequence
location: 1349..1416
location: region:1349-1416:1
so has part: feature:1349-1416:1:exon
subclass of: SO_0000663

12977568
type: Gene
SIO_000068: ncbigene

position:1349:1
position: 1349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1416:1
position: 1416
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1349-1416:1:exon

trnD
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 413601
gene: trnD
product: tRNA-Asp
SIO_010081: trnD
subclass of: SO_0000673
so part of: trnD
location: 1349..1416
location: region:1349-1416:1
so has part: feature:1349-1416:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1349-1416:1:exon

trnS(AGY)
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: trnS(AGY)
so part of: sequence
location: 1428..1487
location: region:1428-1487:1
so has part: feature:1428-1487:1:exon
subclass of: SO_0000663

12977569
type: Gene
SIO_000068: ncbigene

position:1428:1
position: 1428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1487:1
position: 1487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1428-1487:1:exon

trnS(AGY)
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 413601
gene: trnS(AGY)
product: tRNA-Ser
codon recognized: AGY
SIO_010081: trnS(AGY)
subclass of: SO_0000673
so part of: trnS(AGY)
location: 1428..1487
location: region:1428-1487:1
so has part: feature:1428-1487:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1428-1487:1:exon

trnM(AUG)
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: trnM(AUG)
so part of: sequence
location: 1494..1560
location: region:1494-1560:1
so has part: feature:1494-1560:1:exon
subclass of: SO_0000663

12977570
type: Gene
SIO_000068: ncbigene

position:1494:1
position: 1494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1560:1
position: 1560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1494-1560:1:exon

trnM(AUG)
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 413601
gene: trnM(AUG)
product: tRNA-Met
codon recognized: AUG
SIO_010081: trnM(AUG)
subclass of: SO_0000673
so part of: trnM(AUG)
location: 1494..1560
location: region:1494-1560:1
so has part: feature:1494-1560:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1494-1560:1:exon

trnN
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: trnN
so part of: sequence
location: 1561..1630
location: region:1561-1630:1
so has part: feature:1561-1630:1:exon
subclass of: SO_0000663

12977562
type: Gene
SIO_000068: ncbigene

position:1561:1
position: 1561
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1630:1
position: 1630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1561-1630:1:exon

trnN
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 413601
gene: trnN
product: tRNA-Asn
SIO_010081: trnN
subclass of: SO_0000673
so part of: trnN
location: 1561..1630
location: region:1561-1630:1
so has part: feature:1561-1630:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1561-1630:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: ATP6
so part of: sequence
location: 1631..2263
location: region:1631-2263:1
so has part: feature:1631-2263:1:exon
subclass of: SO_0000010

12977582
type: Gene
SIO_000068: ncbigene

position:1631:1
position: 1631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2263:1
position: 2263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1631-2263:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 413601
gene: ATP6
codon start: 1
transl table: 13
product: ATP synthase F0 subunit 6
translation: MMNLFFPFESSFMIFPMGLVLLLFGFMFIGGNFLSKGMFFLIMGQFTSKFSGMFFFYFSVFFVILFMNLLGMMPFGFSVSSLLVVTFSFSVMLWISTIIRGYSNNFKYNIAHLLPLGTPYALVLMLVWIEIMSQFARPLALGIRLMANITAGHLLLHLISQGFFFLGPMGILMMFLFSTLVILEIAVSFIQPYVFGLLLSLYMNEGLGTE
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 1631..2263
location: region:1631-2263:1
so has part: feature:1631-2263:1:exon

YP_006341026.1
type: Protein
SIO_000068: ncbiprotein

A7M7Z6
type: GOA
SIO_000068: goa

IPR000568
type: InterPro
SIO_000068: interpro

IPR023011
type: InterPro
SIO_000068: interpro

A7M7Z6
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:1631-2263:1:exon

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: ND2
so part of: sequence
location: 2256..3329
location: region:2256-3329:1
so has part: feature:2256-3329:1:exon
subclass of: SO_0000010

12977599
type: Gene
SIO_000068: ncbigene

position:2256:1
position: 2256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3329:1
position: 3329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2256-3329:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 413601
gene: ND2
codon start: 1
transl except: (pos:2256..2258,aa:Met)
transl table: 13
product: NADH dehydrogenase subunit 2
translation: MNNLLNFLKINIVLGLIITLSFNDFFPLWVGMEMISLLIMGMIFLKKATGIGGIGFQKFGVLIKYMFLQIFSGMIILFSFSLSNLLLDFSKMGLNLGLHTQYYGINMIMEMFSFMFIFSIALKLGLFPGHLWVVDVFSGLTFHECFILGTIPKYAPFLLLNGDYCESNNLLMLLGGLSILLGSFQGLNYSDMRQIMGGSSIMNTGWLMLGFLFGGLNMFFMMYLIYSYTLWVLFNLIRVLNIQTLGAYKTWFSYTDKMLFSFAIFIMMGMPCGVMFFYKIFLIMGSNNVSLFFFLMLSGYTMFVFYSRMMSQVWNYDFFGVMFLYTSVNRFGMSVNKYITSLVTLFFPGMVILFKFL
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 2256..3329
location: region:2256-3329:1
so has part: feature:2256-3329:1:exon

YP_006341027.1
type: Protein
SIO_000068: ncbiprotein

A7M7Z7
type: GOA
SIO_000068: goa

IPR001750
type: InterPro
SIO_000068: interpro

A7M7Z7
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:2256-3329:1:exon

trnA
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: trnA
so part of: sequence
location: 3346..3407
location: region:3346-3407:1
so has part: feature:3346-3407:1:exon
subclass of: SO_0000663

12977580
type: Gene
SIO_000068: ncbigene

position:3346:1
position: 3346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3407:1
position: 3407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3346-3407:1:exon

trnA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 413601
gene: trnA
product: tRNA-Ala
SIO_010081: trnA
subclass of: SO_0000673
so part of: trnA
location: 3346..3407
location: region:3346-3407:1
so has part: feature:3346-3407:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3346-3407:1:exon

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: COX2
so part of: sequence
location: 3408..4097
location: region:3408-4097:1
so has part: feature:3408-4097:1:exon
subclass of: SO_0000010

12977590
type: Gene
SIO_000068: ncbigene

position:3408:1
position: 3408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4097:1
position: 4097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3408-4097:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 413601
gene: COX2
codon start: 1
transl table: 13
product: cytochrome c oxidase subunit II
translation: MYPYTFIQLTDSNTFFGHEIVLFHDFSLASLMFILTAVLLMFKALKKKKFVVLAYKGSNMLEFLWTFFPVFILISIGLPSLYLMYLLEGSFKGDLTFKVVGHQWYWSYEGGDFCDFDMSSYMIPSEDLVEGQFRLLEVDNTMVLPYSTNIRLMITSYDVIHSWTLPSLKMKVDAVPGRLNTMNIFSFQPGSFYGQCSEICGLLHSFMPIHVEFVNWETFLNNVTEESFN
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 3408..4097
location: region:3408-4097:1
so has part: feature:3408-4097:1:exon

YP_006341028.1
type: Protein
SIO_000068: ncbiprotein

A7M7Z8
type: GOA
SIO_000068: goa

IPR001505
type: InterPro
SIO_000068: interpro

IPR002429
type: InterPro
SIO_000068: interpro

IPR008972
type: InterPro
SIO_000068: interpro

IPR011759
type: InterPro
SIO_000068: interpro

IPR015964
type: InterPro
SIO_000068: interpro

A7M7Z8
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:3408-4097:1:exon

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: CYTB
so part of: sequence
location: 4069..5156
location: region:4069-5156:1
so has part: feature:4069-5156:1:exon
subclass of: SO_0000010

12977594
type: Gene
SIO_000068: ncbigene

position:4069:1
position: 4069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5156:1
position: 5156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4069-5156:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 413601
gene: CYTB
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:5155..5156,aa:TERM)
transl table: 13
product: cytochrome b
translation: MMLRKNPLINLFIGSFYRLPAPININYLWNGGSLIGTFMVIQVLTGLFLSMHYCGNTLMAFYSVNHIMRDVSGGWIMRYIHANGASFFLAFIFMHIGRNLYYKTYYRKGAWMVGIVLLILSMLTAFLGYVLPWGQMSFWGATVITNFVTAIPVWGETIVNWLWGGFSVDNPTLNRFYTFHFLFPFLIIALSIVHLFFIHQTGSSNPLGNFSDNMKLDFWPYYGVKDILGMFLSLFFFLLLVGFSPDYFGDAENFLKANPMVTPVHIKPEWYFLFAYAILRCIPNKKLGVLALVFSIVVFFFFIFSKKKVLPSLGYRLVFWIWAMNFIMLTWLGGCPVKDIFIFMAQISSFIYFFFLFLLMVI
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 4069..5156
location: region:4069-5156:1
so has part: feature:4069-5156:1:exon

YP_006341029.1
type: Protein
SIO_000068: ncbiprotein

A7M7Z9
type: GOA
SIO_000068: goa

IPR005797
type: InterPro
SIO_000068: interpro

IPR005798
type: InterPro
SIO_000068: interpro

IPR016174
type: InterPro
SIO_000068: interpro

IPR016175
type: InterPro
SIO_000068: interpro

A7M7Z9
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:4069-5156:1:exon

trnP
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: trnP
so part of: sequence
location: 5157..5218
location: region:5157-5218:1
so has part: feature:5157-5218:1:exon
subclass of: SO_0000663

12977586
type: Gene
SIO_000068: ncbigene

position:5157:1
position: 5157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5218:1
position: 5218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5157-5218:1:exon

trnP
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 413601
gene: trnP
product: tRNA-Pro
SIO_010081: trnP
subclass of: SO_0000673
so part of: trnP
location: 5157..5218
location: region:5157-5218:1
so has part: feature:5157-5218:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5157-5218:1:exon

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: ND4L
so part of: sequence
location: 5227..5499
location: region:5227-5499:1
so has part: feature:5227-5499:1:exon
subclass of: SO_0000010

12977598
type: Gene
SIO_000068: ncbigene

position:5227:1
position: 5227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5499:1
position: 5499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5227-5499:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 413601
gene: ND4L
codon start: 1
transl except: (pos:5227..5229,aa:Met)
transl table: 13
product: NADH dehydrogenase subunit 4L
translation: MMWIMFIIMFSLMIFSLSMIWMDFMKILITIEFTFLIIVLILMFGGMMISDSLIIFLMVMGASESVFTLTLLMLQNKYKYSNISLKFSTW
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 5227..5499
location: region:5227-5499:1
so has part: feature:5227-5499:1:exon

YP_006341030.1
type: Protein
SIO_000068: ncbiprotein

A7M800
type: GOA
SIO_000068: goa

A7M800
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:5227-5499:1:exon

trnH
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: trnH
so part of: sequence
location: 5500..5569
location: region:5500-5569:1
so has part: feature:5500-5569:1:exon
subclass of: SO_0000663

12977595
type: Gene
SIO_000068: ncbigene

position:5500:1
position: 5500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5569:1
position: 5569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5500-5569:1:exon

trnH
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 413601
gene: trnH
product: tRNA-His
SIO_010081: trnH
subclass of: SO_0000673
so part of: trnH
location: 5500..5569
location: region:5500-5569:1
so has part: feature:5500-5569:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5500-5569:1:exon

trnR
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: trnR
so part of: sequence
location: 5573..5640
location: region:5573-5640:1
so has part: feature:5573-5640:1:exon
subclass of: SO_0000663

12977585
type: Gene
SIO_000068: ncbigene

position:5573:1
position: 5573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5640:1
position: 5640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5573-5640:1:exon

trnR
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 413601
gene: trnR
product: tRNA-Arg
SIO_010081: trnR
subclass of: SO_0000673
so part of: trnR
location: 5573..5640
location: region:5573-5640:1
so has part: feature:5573-5640:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5573-5640:1:exon

trnQ
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: trnQ
so part of: sequence
location: 5640..5706
location: region:5640-5706:1
so has part: feature:5640-5706:1:exon
subclass of: SO_0000663

12977571
type: Gene
SIO_000068: ncbigene

position:5706:1
position: 5706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5640-5706:1:exon

trnQ
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 413601
gene: trnQ
product: tRNA-Gln
SIO_010081: trnQ
subclass of: SO_0000673
so part of: trnQ
location: 5640..5706
location: region:5640-5706:1
so has part: feature:5640-5706:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5640-5706:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: COX3
so part of: sequence
location: 5708..6496
location: region:5708-6496:1
so has part: feature:5708-6496:1:exon
subclass of: SO_0000010

12977576
type: Gene
SIO_000068: ncbigene

position:5708:1
position: 5708
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6496:1
position: 6496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5708-6496:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 413601
gene: COX3
codon start: 1
transl table: 13
product: cytochrome c oxidase subunit III
translation: MTVRFTPFHLVDGSPWPLLSALGAFGVVGGLMSMMHQHLFGTLFFYGGLIFLLASLWWRDVDRESSLLGFHTKGVQKNMYSGMIWFIMSEVFFFLGFFWTFFHSGLNSVIDLGMEWPPFGVMVLNPYGVPLLNTAVLISSGITVTCSHYSLLISDFNSCSIWLANTVFLGVLFTGLQYMEYLESSFGMNDSVYGSIFFMATGFHGFHVIIGSIFLFISFLRILSGKLSPNRHVGFECAIWYWHFVDVVWIFLYACIYGWGSL
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 5708..6496
location: region:5708-6496:1
so has part: feature:5708-6496:1:exon

YP_006341031.1
type: Protein
SIO_000068: ncbiprotein

A7M801
type: GOA
SIO_000068: goa

IPR000298
type: InterPro
SIO_000068: interpro

IPR013833
type: InterPro
SIO_000068: interpro

A7M801
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:5708-6496:1:exon

trnK
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: trnK
so part of: sequence
location: 6498..6566
location: region:6498-6566:1
so has part: feature:6498-6566:1:exon
subclass of: SO_0000663

12977583
type: Gene
SIO_000068: ncbigene

position:6498:1
position: 6498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6566:1
position: 6566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6498-6566:1:exon

trnK
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 413601
gene: trnK
product: tRNA-Lys
SIO_010081: trnK
subclass of: SO_0000673
so part of: trnK
location: 6498..6566
location: region:6498-6566:1
so has part: feature:6498-6566:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6498-6566:1:exon

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: ND1
so part of: sequence
location: 6611..7519
location: region:6611-7519:1
so has part: feature:6611-7519:1:exon
subclass of: SO_0000010

12977572
type: Gene
SIO_000068: ncbigene

position:6611:1
position: 6611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7519:1
position: 7519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6611-7519:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 413601
gene: ND1
codon start: 1
transl table: 13
product: NADH dehydrogenase subunit 1
translation: MVLLVITYLLFILILLLMVAFLVLLERKVLGLVQFRKGPNIVGIYGIVQTIVDGVKLILKNLMVLMNVRKFFFLLAPILSFILSLINWFFIPTPFILVNSEFGILITLVISSLLVYSTLWAGWGSNNIYSLIGGIRGVAQMISYEVVLGFFILMMLLFLNSFNWDIFVYYQKSSLFYGGFFLFLLSWISIMLAELNRAPFDLIEGESELVSGFNVEYGGFIFALMFLGEYMNIWFMSWITILIFLGGNMSLVVLSFGVVLLILYIRSLLPRFKFTDLIVITWKIYLPLVLVYLILLLGYFSL
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 6611..7519
location: region:6611-7519:1
so has part: feature:6611-7519:1:exon

YP_006341032.1
type: Protein
SIO_000068: ncbiprotein

A7M802
type: GOA
SIO_000068: goa

IPR001694
type: InterPro
SIO_000068: interpro

IPR018086
type: InterPro
SIO_000068: interpro

A7M802
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:6611-7519:1:exon

rrnL
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: rrnL
so part of: sequence
location: 7591..8719
location: region:7591-8719:1
so has part: feature:7591-8719:1:exon
subclass of: SO_0000573

12977574
type: Gene
SIO_000068: ncbigene

position:7591:1
position: 7591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8719:1
position: 8719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7591-8719:1:exon

rrnL
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 413601
gene: rrnL
product: large subunit ribosomal RNA
SIO_010081: rrnL
subclass of: SO_0000673
so part of: rrnL
location: 7591..8719
location: region:7591-8719:1
so has part: feature:7591-8719:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7591-8719:1:exon

trnI
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: trnI
so part of: sequence
location: 8720..8786
location: region:8720-8786:1
so has part: feature:8720-8786:1:exon
subclass of: SO_0000663

12977597
type: Gene
SIO_000068: ncbigene

position:8720:1
position: 8720
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8786:1
position: 8786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8720-8786:1:exon

trnI
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 413601
gene: trnI
product: tRNA-Ile
SIO_010081: trnI
subclass of: SO_0000673
so part of: trnI
location: 8720..8786
location: region:8720-8786:1
so has part: feature:8720-8786:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8720-8786:1:exon

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: ND3
so part of: sequence
location: 8788..9129
location: region:8788-9129:1
so has part: feature:8788-9129:1:exon
subclass of: SO_0000010

12977579
type: Gene
SIO_000068: ncbigene

position:8788:1
position: 8788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9129:1
position: 9129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8788-9129:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 413601
gene: ND3
codon start: 1
transl table: 13
product: NADH dehydrogenase subunit 3
translation: MTFMLLLVVGLSSLLLFIGTLVMKGFVLNIFGASFSSYECGFMTMMNFKNFYTLQFFIIGLSFMLFDLEILLFLPFIYSESGNSSSIYWALFFLFFVSYLLVYELSMNVMSHW
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 8788..9129
location: region:8788-9129:1
so has part: feature:8788-9129:1:exon

YP_006341033.1
type: Protein
SIO_000068: ncbiprotein

A7M803
type: GOA
SIO_000068: goa

IPR000440
type: InterPro
SIO_000068: interpro

A7M803
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:8788-9129:1:exon

trnE
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: trnE
so part of: sequence
location: 9130..9199
location: region:9130-9199:1
so has part: feature:9130-9199:1:exon
subclass of: SO_0000663

12977591
type: Gene
SIO_000068: ncbigene

position:9130:1
position: 9130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9199:1
position: 9199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9130-9199:1:exon

trnE
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 413601
gene: trnE
product: tRNA-Glu
SIO_010081: trnE
subclass of: SO_0000673
so part of: trnE
location: 9130..9199
location: region:9130-9199:1
so has part: feature:9130-9199:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9130-9199:1:exon

trnV
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: trnV
so part of: sequence
location: 9200..9264
location: region:9200-9264:1
so has part: feature:9200-9264:1:exon
subclass of: SO_0000663

12977584
type: Gene
SIO_000068: ncbigene

position:9200:1
position: 9200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9264:1
position: 9264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9200-9264:1:exon

trnV
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 413601
gene: trnV
product: tRNA-Val
SIO_010081: trnV
subclass of: SO_0000673
so part of: trnV
location: 9200..9264
location: region:9200-9264:1
so has part: feature:9200-9264:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9200-9264:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: ND4
so part of: sequence
location: 9278..10597
location: region:9278-10597:1
so has part: feature:9278-10597:1:exon
subclass of: SO_0000010

12977588
type: Gene
SIO_000068: ncbigene

position:9278:1
position: 9278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10597:1
position: 10597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9278-10597:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 413601
gene: ND4
codon start: 1
transl table: 13
product: NADH dehydrogenase subunit 4
translation: MYLMLVPMVFLFYHKKFMMWFLFYGFFLLFSILPMILKTGEIVFSNHFSSWSGDSISTMLIVLSILVILLSGIIMMEGNRNNYMMMSFFFSMLFLILFFGSDDLLNFLVFFELSMLPIFLLIGWWGKGKERMFSNYYFFLYTLVTSLPMFMLILKTLTLGMESMTMYNFYAMQISWFMFMLLVLGFLTKLPIYGLHIWLPKAHVDAPVGGSMVLAGILLKIGGFGMMRCFMLLGEEVKLTYSVFFIMFLGVWGLLFSGIICLRLTDFKVIVAFSSVSHMSLSVSGLMSYYYWGFKGSYLMFLGHGILSPVLFLFGDLLYKRFHSRHINSLKGLISSSSFMFYLISLFFFAMNFGFPPFVNFFGEIGLFMSLLSFNILQVFFLMGGFLMAGIFMMNMFVMIGQSKKLLFQKMILLNYEKTTIFLFFISYVSMSFLFSSII
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 9278..10597
location: region:9278-10597:1
so has part: feature:9278-10597:1:exon

YP_006341034.1
type: Protein
SIO_000068: ncbiprotein

A7M804
type: GOA
SIO_000068: goa

IPR003918
type: InterPro
SIO_000068: interpro

A7M804
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:9278-10597:1:exon

trnC
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: trnC
so part of: sequence
location: 10607..10658
location: region:10607-10658:1
so has part: feature:10607-10658:1:exon
subclass of: SO_0000663

12977573
type: Gene
SIO_000068: ncbigene

position:10607:1
position: 10607
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10658:1
position: 10658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10607-10658:1:exon

trnC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 413601
gene: trnC
product: tRNA-Cys
SIO_010081: trnC
subclass of: SO_0000673
so part of: trnC
location: 10607..10658
location: region:10607-10658:1
so has part: feature:10607-10658:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10607-10658:1:exon

trnF
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: trnF
so part of: sequence
location: 10672..10739
location: region:10672-10739:1
so has part: feature:10672-10739:1:exon
subclass of: SO_0000663

12977593
type: Gene
SIO_000068: ncbigene

position:10672:1
position: 10672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10739:1
position: 10739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10672-10739:1:exon

trnF
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 413601
gene: trnF
product: tRNA-Phe
SIO_010081: trnF
subclass of: SO_0000673
so part of: trnF
location: 10672..10739
location: region:10672-10739:1
so has part: feature:10672-10739:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10672-10739:1:exon

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: ATP8
so part of: sequence
location: 10754..10864
location: region:10754-10864:1
so has part: feature:10754-10864:1:exon
subclass of: SO_0000010

12977575
type: Gene
SIO_000068: ncbigene

position:10754:1
position: 10754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10864:1
position: 10864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10754-10864:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 413601
gene: ATP8
codon start: 1
transl table: 13
product: ATP synthase F0 subunit 8
translation: MPQLNLFSFFYISVISFSMLMITFKYEPILVPVYSK
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 10754..10864
location: region:10754-10864:1
so has part: feature:10754-10864:1:exon

YP_006341035.1
type: Protein
SIO_000068: ncbiprotein

A7M805
type: GOA
SIO_000068: goa

A7M805
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:10754-10864:1:exon

trnG(AGR)
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: trnG(AGR)
so part of: sequence
location: 10885..10952
location: region:10885-10952:1
so has part: feature:10885-10952:1:exon
subclass of: SO_0000663

12977581
type: Gene
SIO_000068: ncbigene

position:10885:1
position: 10885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10952:1
position: 10952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10885-10952:1:exon

trnG(AGR)
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 413601
gene: trnG(AGR)
product: tRNA-Gly
codon recognized: AGR
SIO_010081: trnG(AGR)
subclass of: SO_0000673
so part of: trnG(AGR)
location: 10885..10952
location: region:10885-10952:1
so has part: feature:10885-10952:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10885-10952:1:exon

trnY
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: trnY
so part of: sequence
location: 10965..11031
location: region:10965-11031:1
so has part: feature:10965-11031:1:exon
subclass of: SO_0000663

12977592
type: Gene
SIO_000068: ncbigene

position:10965:1
position: 10965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11031:1
position: 11031
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10965-11031:1:exon

trnY
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 413601
gene: trnY
product: tRNA-Tyr
SIO_010081: trnY
subclass of: SO_0000673
so part of: trnY
location: 10965..11031
location: region:10965-11031:1
so has part: feature:10965-11031:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10965-11031:1:exon

trnL(CUN)
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: trnL(CUN)
so part of: sequence
location: 11035..11098
location: region:11035-11098:1
so has part: feature:11035-11098:1:exon
subclass of: SO_0000663

12977577
type: Gene
SIO_000068: ncbigene

position:11035:1
position: 11035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11098:1
position: 11098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11035-11098:1:exon

trnL(CUN)
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 413601
gene: trnL(CUN)
product: tRNA-Leu
codon recognized: CUN
SIO_010081: trnL(CUN)
subclass of: SO_0000673
so part of: trnL(CUN)
location: 11035..11098
location: region:11035-11098:1
so has part: feature:11035-11098:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11035-11098:1:exon

trnS(UCN)
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: trnS(UCN)
so part of: sequence
location: 11099..11159
location: region:11099-11159:1
so has part: feature:11099-11159:1:exon
subclass of: SO_0000663

12977589
type: Gene
SIO_000068: ncbigene

position:11099:1
position: 11099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11159:1
position: 11159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11099-11159:1:exon

trnS(UCN)
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 413601
gene: trnS(UCN)
product: tRNA-Ser
codon recognized: UCN
SIO_010081: trnS(UCN)
subclass of: SO_0000673
so part of: trnS(UCN)
location: 11099..11159
location: region:11099-11159:1
so has part: feature:11099-11159:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11099-11159:1:exon

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: COX1
so part of: sequence
location: 11161..12723
location: region:11161-12723:1
so has part: feature:11161-12723:1:exon
subclass of: SO_0000010

12977600
type: Gene
SIO_000068: ncbigene

position:11161:1
position: 11161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12723:1
position: 12723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11161-12723:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 413601
gene: COX1
codon start: 1
transl table: 13
product: cytochrome c oxidase subunit I
translation: MYLYLDFKEWLTRWMFSTNHKDIGTLYFIFGTWSGIIGTSLSVIIRMELSQGGGVINNGQIYNVVVTSHAFVMIFFFVMPIMIGGFGNWLIPLMVGAPDMAFPRMNNMSFWLLPPSFFLLLKSGFSGSAGVGTGWTVYPPLSSNIGHSNSGVDMAIFSLHLAGVSSILGSVNFLVTLFNMKNKGKSMSNLSLFCWSLIVTTILLVLSLPVLAAAITMLLFDRNFNTTFFDPNGGGDPILYQHLFWFFGHPEVYILILPGFGMISHVIVFYSGKDNIFGYYGMVWAMGGIGFLGFLVWAHHMFSVGMDVDSRAYFTSATMIIAVPTGIKVFSWVSTLLGANIYWGLPLLWAYGFLFLFTIGGLTGIILANCSLDLVLHDTYYVVAHFHYVLSMGAVFAIFSGFFHWFPLFTGLSFNKILGQLHFFMMFVGVNLTFFPQHFLGLSGMPRRYNDYPDFYLTWNVVSSIGSLLSGVAVLVFFLMLWESFYSKRFLFSAESKSMEFKMGFPPALHTWMTSPVFKA
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 11161..12723
location: region:11161-12723:1
so has part: feature:11161-12723:1:exon

YP_006341036.1
type: Protein
SIO_000068: ncbiprotein

A7M806
type: GOA
SIO_000068: goa

IPR000883
type: InterPro
SIO_000068: interpro

A7M806
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:11161-12723:1:exon

trnT
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: trnT
so part of: sequence
location: 12725..12788
location: region:12725-12788:1
so has part: feature:12725-12788:1:exon
subclass of: SO_0000663

12977578
type: Gene
SIO_000068: ncbigene

position:12725:1
position: 12725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12788:1
position: 12788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12725-12788:1:exon

trnT
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 413601
gene: trnT
product: tRNA-Thr
SIO_010081: trnT
subclass of: SO_0000673
so part of: trnT
location: 12725..12788
location: region:12725-12788:1
so has part: feature:12725-12788:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12725-12788:1:exon

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: ND5
so part of: sequence
location: 12792..14523
location: region:12792-14523:1
so has part: feature:12792-14523:1:exon
subclass of: SO_0000010

12977587
type: Gene
SIO_000068: ncbigene

position:12792:1
position: 12792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14523:1
position: 14523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12792-14523:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 413601
gene: ND5
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:14523,aa:TERM)
transl table: 13
product: NADH dehydrogenase subunit 5
translation: MKIIGVFIPLLLTSFKMNKYLFELKTMKVNSFLFCIFSMILVIHNHMGVLCLGGGWMNTNFFISWDFYSLVFLFIGFSVTWSILDFANWYMGEEVKNKTFMMFLFMFLMFMFILTSSINLVFLLIGWEGVGIMSFLLINWWFGRGEAGLSGLQAMIYNRIGDFCFYIGIFLIFMSGMNVNIIGGYGNSQNFNNFVFLLFLVGMMAKSSLYLFHPWLPNAMEGPTPVSALLHSSTMVVAGVYLLCRLLGFFNFSSMGIVMLVGALTMLYGSICALGQFDMKKIIAHSTTSQLGLMVVTLGLGFPIISFFHLCMHAYVKSLIFISSGVFIHGIGGLQDYRKMMMGCISSKFSKLCMILCSLSLGGFPFMSGFYSKDSILENMYGSFFNSFGSMLVIVGSVFTVAYSFRLVSLTFLVDSKEGSFSVKLNGQEQFNTTFFFMSRLFIWGMLGGFFTFWSLFFILNEEHMGGWMKMIPLGILLLGLMIGSKFFFGMLMEFSPNTQLLYYNPVIHRFQLLILFYGINFIKIIEFWGMEMLWVNQLKKIPKFSVLGKGFVSYKDYFIFGMFFLSVLFFLYFLLQ
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 12792..14523
location: region:12792-14523:1
so has part: feature:12792-14523:1:exon

YP_006341037.1
type: Protein
SIO_000068: ncbiprotein

A7M807
type: GOA
SIO_000068: goa

IPR001516
type: InterPro
SIO_000068: interpro

A7M807
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:12792-14523:1:exon

trnL(UUR)
type: Gene
subclass of: SO_0000704
RO_0002162: 413601
gene: trnL(UUR)
so part of: sequence
location: 14524..14591
location: region:14524-14591:1
so has part: feature:14524-14591:1:exon
subclass of: SO_0000663

12977596
type: Gene
SIO_000068: ncbigene

position:14524:1
position: 14524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14524-14591:1:exon

trnL(UUR)
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 413601
gene: trnL(UUR)
product: tRNA-Leu
codon recognized: UUR
SIO_010081: trnL(UUR)
subclass of: SO_0000673
so part of: trnL(UUR)
location: 14524..14591
location: region:14524-14591:1
so has part: feature:14524-14591:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14524-14591:1:exon