Fusobacterium polymorphum strain NCTC10562 plasmid 2, complete sequence.
type: Entry
definition: Fusobacterium polymorphum strain NCTC10562 plasmid 2, complete sequence.
sequence version: NZ_LN831028.1
sequence date: 2023-04-09
sequence: sequence
division: CON
label: NZ_LN831028.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMEA2479572
keyword: RefSeq
source: Fusobacterium polymorphum
organism: Fusobacterium polymorphum
taxonomy: Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Fusobacteriaceae; Fusobacterium.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nLN831028.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/09/2023 08:49:27\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,400\nCDSs (total) :: 2,335\nGenes (coding) :: 2,302\nCDSs (with protein) :: 2,302\nGenes (RNA) :: 65\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 3\nPseudo Genes (total) :: 33\nCDSs (without protein) :: 33\nPseudo Genes (ambiguous residues) :: 0 of 33\nPseudo Genes (frameshifted) :: 16 of 33\nPseudo Genes (incomplete) :: 17 of 33\nPseudo Genes (internal stop) :: 11 of 33\nPseudo Genes (multiple problems) :: 9 of 33\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 11934
topology: circular
so has quality: SO_0000988
location: 1..11934
location: region:1-11934:1
RO_0002162: 76857

NZ_LN831028
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMEA2479572
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Informatics, Pathogen.
journal: Submitted (09-MAR-2015) SC, Wellcome Trust Sanger Institute, CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11934:1
position: 11934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11934:1:source
so part of: sequence
organism: Fusobacterium polymorphum
mol type: genomic DNA
strain: NCTC10562
serovar: not known
isolation source: inflamed gingiva
host: Homo sapiens
culture collection: NCTC:10562
type material: type strain of Fusobacterium nucleatum subsp. polymorphum
plasmid: 2
country: USA
collection date: 1951

76857
type: Taxonomy
SIO_000068: taxonomy

AT688_RS11810
type: Gene
subclass of: SO_0000704
RO_0002162: 76857
locus tag: AT688_RS11810
old locus tag: ERS445057_02386
so part of: sequence
location: 1..990
location: region:1-990:1
so has part: feature:1-990:1:exon
subclass of: SO_0000010

45636131
type: Gene
SIO_000068: ncbigene

position:990:1
position: 990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-990:1:exon

AT688_RS11810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 76857
locus tag: AT688_RS11810
old locus tag: ERS445057_02386
inference: COORDINATES: protein motif:HMM:NF013235.2
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MKKKDDDLIIVSKDFINLRYGYFKSVEILLFYRILLAGKNLKKDNNVIIEDFSIVQKDLEIKAKDLKKEIFAIQDNFLRTKIKYANRNGVGTVALFEGIYNNIKDNTIEAILTSRGKEFLQNLSDGYIRFLFTDVLKFKSKYSRLILPHLMNVSHLRKFIVNKEKLLEIFEIEEKDGYNNLSNFNRVVLKAVKSDLKDIFEDFKITKNKEGRTIKEYIFTWSNNFNFKKDFSKEEETIDYTDEIIEKSSAELTELTELTAEETIKKFIKENIPTLNYKSIQKNIKNRLENGETPEEIIAFIKRNWHRAIDDDKYKSKIGILKKAFRRKF
SIO_010081: AT688_RS11810
subclass of: SO_0000673
so part of: AT688_RS11810
location: 1..990
location: region:1-990:1
so has part: feature:1-990:1:exon

WP_058229313.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-990:1:exon

AT688_RS11815
type: Gene
subclass of: SO_0000704
RO_0002162: 76857
locus tag: AT688_RS11815
old locus tag: ERS445057_02387
so part of: sequence
location: 1081..1689
location: region:1081-1689:1
so has part: feature:1081-1689:1:exon
subclass of: SO_0000010

45636132
type: Gene
SIO_000068: ncbigene

position:1081:1
position: 1081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1689:1
position: 1689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1081-1689:1:exon

AT688_RS11815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 76857
locus tag: AT688_RS11815
old locus tag: ERS445057_02387
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIGILLILLKQRKKEEEKKEVVKEKKIEIISYKEYLERKEIELKKIIEKTKTGDKKLDLALRKMNFFLVFKGKIQVNLTKTEYEQETENLKKYFQVSLEIIKQEVERIFIITKEKEEEVKEETKVAVAEVVEKNNAIDEEAILKKVSKSLLENATEIKGNDTLSKEERKEKLLKMLRENIELLEKETEEADQFDDIASIFKK
SIO_010081: AT688_RS11815
subclass of: SO_0000673
so part of: AT688_RS11815
location: 1081..1689
location: region:1081-1689:1
so has part: feature:1081-1689:1:exon

WP_058229314.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1081-1689:1:exon

AT688_RS11820
type: Gene
subclass of: SO_0000704
RO_0002162: 76857
locus tag: AT688_RS11820
old locus tag: ERS445057_02388
so part of: sequence
location: complement(1768..2076)
location: region:1768-2076:-1
so has part: feature:1768-2076:-1:exon
subclass of: SO_0000010

45636133
type: Gene
SIO_000068: ncbigene

position:1768:-1
position: 1768
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2076:-1
position: 2076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1768-2076:-1:exon

AT688_RS11820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 76857
locus tag: AT688_RS11820
old locus tag: ERS445057_02388
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MENIKKKKNNLDAIIKVLETYNINANDLKKLNELQIIKQKNLDIIKLLTKLESGFKSKKIKFVTAEETQEKILKILNDIVPATKKNNKKNKEQQNLENNINS
SIO_010081: AT688_RS11820
subclass of: SO_0000673
so part of: AT688_RS11820
location: complement(1768..2076)
location: region:1768-2076:-1
so has part: feature:1768-2076:-1:exon

WP_011950376.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1768-2076:-1:exon

AT688_RS11825
type: Gene
subclass of: SO_0000704
RO_0002162: 76857
locus tag: AT688_RS11825
old locus tag: ERS445057_02389
so part of: sequence
location: 3580..3759
location: region:3580-3759:1
so has part: feature:3580-3759:1:exon
subclass of: SO_0000010

45636134
type: Gene
SIO_000068: ncbigene

position:3580:1
position: 3580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3759:1
position: 3759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3580-3759:1:exon

AT688_RS11825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 76857
locus tag: AT688_RS11825
old locus tag: ERS445057_02389
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEDQLFNDEMLIGIRTGAKLIEVKKTNGLVKLNKEFLGIELGFLNKKELELLLYTMPGL
SIO_010081: AT688_RS11825
subclass of: SO_0000673
so part of: AT688_RS11825
location: 3580..3759
location: region:3580-3759:1
so has part: feature:3580-3759:1:exon

WP_058229315.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3580-3759:1:exon

AT688_RS12750
type: Gene
subclass of: SO_0000704
RO_0002162: 76857
locus tag: AT688_RS12750
so part of: sequence
location: 3849..3974
location: region:3849-3974:1
so has part: feature:3849-3974:1:exon
subclass of: SO_0000010

79676345
type: Gene
SIO_000068: ncbigene

position:3849:1
position: 3849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3974:1
position: 3974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3849-3974:1:exon

AT688_RS12750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 76857
locus tag: AT688_RS12750
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKIYVETLHKRLAKVNIRADKKGISGTLNLFEYVLTDTRDF
SIO_010081: AT688_RS12750
subclass of: SO_0000673
so part of: AT688_RS12750
location: 3849..3974
location: region:3849-3974:1
so has part: feature:3849-3974:1:exon

WP_276325675.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3849-3974:1:exon

AT688_RS11830
type: Gene
subclass of: SO_0000704
RO_0002162: 76857
locus tag: AT688_RS11830
old locus tag: ERS445057_02390
so part of: sequence
location: 4116..4859
location: region:4116-4859:1
so has part: feature:4116-4859:1:exon
subclass of: SO_0000010

45636135
type: Gene
SIO_000068: ncbigene

position:4116:1
position: 4116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4859:1
position: 4859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4116-4859:1:exon

AT688_RS11830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 76857
locus tag: AT688_RS11830
old locus tag: ERS445057_02390
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MLPHLISCSKDKEFEISFENLEEILGIKGKYSRKTDFNKRILKPTVEELEIIFKDLKVKGLKKNELDPRKITHYKFMWTNNINYDDKKEETSFYYELEETNSNDKKEYSKVFINDNNVTDENEKIIVAEAEEELTAEETIKKFINENIQTLNYKSIQKNIKSRLENGETPEEIIAFIKRNWHRAIENDIYKNKVAILIKSIAENFELNLTKEEIQKEKNILNGKTIIKREVKYIKSDWSNNDLKKEK
SIO_010081: AT688_RS11830
subclass of: SO_0000673
so part of: AT688_RS11830
location: 4116..4859
location: region:4116-4859:1
so has part: feature:4116-4859:1:exon

WP_058229316.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4116-4859:1:exon

AT688_RS12385
type: Gene
subclass of: SO_0000704
RO_0002162: 76857
locus tag: AT688_RS12385
old locus tag: ERS445057_02391
so part of: sequence
location: 5191..5436
location: region:5191-5436:1
so has part: feature:5191-5436:1:exon
subclass of: SO_0000010

45636201
type: Gene
SIO_000068: ncbigene

position:5191:1
position: 5191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5436:1
position: 5436
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5191-5436:1:exon

AT688_RS12385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 76857
locus tag: AT688_RS12385
old locus tag: ERS445057_02391
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKEWEEEINKLPSVKHLSEVYYQLFCLYQEKEKYKENTELENRINNLQNIRVKLEKKLEEEKTELWNKKFRKEEEEEELDF
SIO_010081: AT688_RS12385
subclass of: SO_0000673
so part of: AT688_RS12385
location: 5191..5436
location: region:5191-5436:1
so has part: feature:5191-5436:1:exon

WP_058229317.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5191-5436:1:exon

AT688_RS11840
type: Gene
subclass of: SO_0000704
RO_0002162: 76857
locus tag: AT688_RS11840
old locus tag: ERS445057_02392
so part of: sequence
location: complement(5513..5821)
location: region:5513-5821:-1
so has part: feature:5513-5821:-1:exon
subclass of: SO_0000010

45636136
type: Gene
SIO_000068: ncbigene

position:5513:-1
position: 5513
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5821:-1
position: 5821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5513-5821:-1:exon

AT688_RS11840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 76857
locus tag: AT688_RS11840
old locus tag: ERS445057_02392
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEKTKKKKNNLDAIIKVLETYNINSNDLKKLNELQIIKQKNLDIIKLLTKLESGFKSRKIKFIEAEETQEKILKILNDIVPATKKNNKKKKEQQNLENNINS
SIO_010081: AT688_RS11840
subclass of: SO_0000673
so part of: AT688_RS11840
location: complement(5513..5821)
location: region:5513-5821:-1
so has part: feature:5513-5821:-1:exon

WP_011950379.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5513-5821:-1:exon

AT688_RS11845
type: Gene
subclass of: SO_0000704
RO_0002162: 76857
gene: mobC
locus tag: AT688_RS11845
old locus tag: ERS445057_02393
so part of: sequence
location: 6221..6541
location: region:6221-6541:1
so has part: feature:6221-6541:1:exon
subclass of: SO_0000010

45636137
type: Gene
SIO_000068: ncbigene

position:6221:1
position: 6221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6541:1
position: 6541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6221-6541:1:exon

AT688_RS11845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 76857
gene: mobC
locus tag: AT688_RS11845
old locus tag: ERS445057_02393
inference: COORDINATES: protein motif:HMM:NF017524.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid mobilization relaxosome protein MobC
translation: MYTKKKEFRINEEIERLLIARSTELNISSSEYIRQLIKADFTQKTLNTITDFKEDLKTTIKELNSIGNNLNQVARYTNKNKILTQENEIKIIEMVEKLVDIIKKIS
SIO_010081: AT688_RS11845
subclass of: SO_0000673
so part of: AT688_RS11845
location: 6221..6541
location: region:6221-6541:1
so has part: feature:6221-6541:1:exon

WP_011950380.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6221-6541:1:exon

AT688_RS11850
type: Gene
subclass of: SO_0000704
RO_0002162: 76857
locus tag: AT688_RS11850
old locus tag: ERS445057_02394
so part of: sequence
location: 6560..6886
location: region:6560-6886:1
so has part: feature:6560-6886:1:exon
subclass of: SO_0000010

45636138
type: Gene
SIO_000068: ncbigene

position:6560:1
position: 6560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6886:1
position: 6886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6560-6886:1:exon

AT688_RS11850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 76857
locus tag: AT688_RS11850
old locus tag: ERS445057_02394
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQVIMKITERQRKSKAGLKQLFNYISRDNFKCAGVGVSDNKEIAFKQFLINKSLFGKDTDNKNRFTYHQILSFGADIDKETVFKITEEYCQKNFLEKGFNSFFCYSHR
SIO_010081: AT688_RS11850
subclass of: SO_0000673
so part of: AT688_RS11850
location: 6560..6886
location: region:6560-6886:1
so has part: feature:6560-6886:1:exon

WP_058229318.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6560-6886:1:exon

AT688_RS11855
type: Gene
subclass of: SO_0000704
RO_0002162: 76857
locus tag: AT688_RS11855
old locus tag: ERS445057_02395
so part of: sequence
location: 7015..7611
location: region:7015-7611:1
so has part: feature:7015-7611:1:exon
subclass of: SO_0000010

45636139
type: Gene
SIO_000068: ncbigene

position:7015:1
position: 7015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7611:1
position: 7611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7015-7611:1:exon

AT688_RS11855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 76857
locus tag: AT688_RS11855
old locus tag: ERS445057_02395
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKSRENYLRISVSNTALDISEKERYKSMHEEKEKEGRKWLTKEQYRAIKDKDSWRNIIKGKLEEIYKRVDLREDNIKEIAKEYQLEVTRHNTKNKTITFALVDLQGKPTKERIKLERLEEQESELNRSKDKENIFEYDIFFKGREKEEEKTREETIKIEAPDEDKEKDKKDFEKEKEYKNILDNFFEEQEEKKKRARF
SIO_010081: AT688_RS11855
subclass of: SO_0000673
so part of: AT688_RS11855
location: 7015..7611
location: region:7015-7611:1
so has part: feature:7015-7611:1:exon

WP_147373408.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7015-7611:1:exon

AT688_RS11860
type: Gene
subclass of: SO_0000704
RO_0002162: 76857
locus tag: AT688_RS11860
old locus tag: ERS445057_02396
so part of: sequence
location: 7571..8764
location: region:7571-8764:1
so has part: feature:7571-8764:1:exon
subclass of: SO_0000010

45636140
type: Gene
SIO_000068: ncbigene

position:7571:1
position: 7571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8764:1
position: 8764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7571-8764:1:exon

AT688_RS11860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 76857
locus tag: AT688_RS11860
old locus tag: ERS445057_02396
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKSRKKKRKEQDSKAKKLEEEVKDIEKAEIDKITQADEVLRRLNIEEEERQAESKAKQEEEKKKDNRPLIFDRLKDFETLTDELELLEFEREHRLTYSSTDIEKDFNNAVYLAFYSLISRKVEFNNQKEADRANSIMENVEKNNDDESIRRNLDLLDELIKDNEKEYERLKKNNWREEEEVAEEKARLEREKREQEQKNEEDKSVTADELTPNIKTENETSKKVSNNQPSEITEFETGKSVGNDLLTDEDLEKNIENLSHNYSEIIIEKYNLYENLPAFKIYSESGSEIFNNKTGYIAEDYIISIIGQEYWDNMDINNIKDWENLGVIIAYGSNENQYTDYADYAEETVINYLKSNPGKVKELESEFNSQLSTPGKSNKTIQEEEKEIEKNDKEMDI
SIO_010081: AT688_RS11860
subclass of: SO_0000673
so part of: AT688_RS11860
location: 7571..8764
location: region:7571-8764:1
so has part: feature:7571-8764:1:exon

WP_058229320.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7571-8764:1:exon

AT688_RS11870
type: Gene
subclass of: SO_0000704
RO_0002162: 76857
locus tag: AT688_RS11870
old locus tag: ERS445057_02397
so part of: sequence
location: 9133..9738
location: region:9133-9738:1
so has part: feature:9133-9738:1:exon
subclass of: SO_0000010

45636141
type: Gene
SIO_000068: ncbigene

position:9133:1
position: 9133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9738:1
position: 9738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9133-9738:1:exon

AT688_RS11870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 76857
locus tag: AT688_RS11870
old locus tag: ERS445057_02397
inference: COORDINATES: protein motif:HMM:NF012464.2
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MIYGYARVSSKEQTLERQLKILKENGVPKENIYKEFASGKSFTDRVEYKRLLENCSVGDTIIFTSLDRFSRNILETTKALEILEKRGIKAKFLKEGISTEMQGVAKLIISIFSWVAEQERELIKERQRQGYNALAKDNKGRMISSKTGKPVGRKEISLDSRQQKLLEDYKSGKINITKVELAKLLGISRSVLYKKILNEVS
SIO_010081: AT688_RS11870
subclass of: SO_0000673
so part of: AT688_RS11870
location: 9133..9738
location: region:9133-9738:1
so has part: feature:9133-9738:1:exon

WP_011950383.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9133-9738:1:exon

AT688_RS11875
type: Gene
subclass of: SO_0000704
RO_0002162: 76857
locus tag: AT688_RS11875
old locus tag: ERS445057_02398
so part of: sequence
location: 9791..10348
location: region:9791-10348:1
so has part: feature:9791-10348:1:exon
subclass of: SO_0000010

45636142
type: Gene
SIO_000068: ncbigene

position:9791:1
position: 9791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10348:1
position: 10348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9791-10348:1:exon

AT688_RS11875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 76857
locus tag: AT688_RS11875
old locus tag: ERS445057_02398
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEKMEGLAYQTKRKIQNVKDCIEAKEDLKEIEKKYFNTVRKKETFLKANAVYFSTDELEYLDYKVENETSKKVSNNQPTEITEFETGKIVSNNLLTNYFNIQENAEALIKIIETYKNNHNTEFTVIGEGEINIPSEVLTMKNDGTMSIKTNMEQYQKIRELAFKNNVGIANFMNFVVWEFLKRHS
SIO_010081: AT688_RS11875
subclass of: SO_0000673
so part of: AT688_RS11875
location: 9791..10348
location: region:9791-10348:1
so has part: feature:9791-10348:1:exon

WP_011950384.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9791-10348:1:exon

AT688_RS11880
type: Gene
subclass of: SO_0000704
RO_0002162: 76857
locus tag: AT688_RS11880
old locus tag: ERS445057_02399
so part of: sequence
location: 10365..10580
location: region:10365-10580:1
so has part: feature:10365-10580:1:exon
subclass of: SO_0000010

45636143
type: Gene
SIO_000068: ncbigene

position:10365:1
position: 10365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10580:1
position: 10580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10365-10580:1:exon

AT688_RS11880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 76857
locus tag: AT688_RS11880
old locus tag: ERS445057_02399
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005919874.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEKGKVLRELEKLLNRDFQYINAGRIAVVANTKEITTDLVKKICLELNINPLQISKADLIAFIQFFKGYNI
SIO_010081: AT688_RS11880
subclass of: SO_0000673
so part of: AT688_RS11880
location: 10365..10580
location: region:10365-10580:1
so has part: feature:10365-10580:1:exon

WP_011950385.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10365-10580:1:exon