Myroides odoratimimus strain G13 plasmid pFM-G13, complete sequence.
Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides.
Complete genome sequence of Myroides odoratimimus G13
Submitted (04-MAR-2019) Shandong Medicinal Biotechnology Center, Shandong First Medical University, 18877 JINSHI ROAD, Jinan 250062, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP037428.1.\nBacteria and source DNA available from Guangxiang cao from Shandong\nFirst Medical University.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SOAPdenovo v. Feb-2019\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 277.0x\nSequencing Technology :: PacBio RSII; Illumina NextSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/06/2022 02:49:18\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,595\nCDSs (total) :: 3,452\nGenes (coding) :: 3,430\nCDSs (with protein) :: 3,430\nGenes (RNA) :: 143\nrRNAs :: 9, 9, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 9, 9 (5S, 16S, 23S)\ntRNAs :: 112\nncRNAs :: 4\nPseudo Genes (total) :: 22\nCDSs (without protein) :: 22\nPseudo Genes (ambiguous residues) :: 0 of 22\nPseudo Genes (frameshifted) :: 5 of 22\nPseudo Genes (incomplete) :: 14 of 22\nPseudo Genes (internal stop) :: 4 of 22\nPseudo Genes (multiple problems) :: 1 of 22\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF040155.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006260107.1
COORDINATES: similar to AA sequence:RefSeq:WP_006260108.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024554.2
COORDINATES: similar to AA sequence:RefSeq:WP_006260543.1
COORDINATES: similar to AA sequence:RefSeq:WP_006257450.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010256771.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010256768.1
COORDINATES: similar to AA sequence:RefSeq:WP_014771181.1
COORDINATES: similar to AA sequence:RefSeq:WP_014935434.1
COORDINATES: protein motif:HMM:NF019997.2
zincin-like metallopeptidase domain-containing protein
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_009316604.1
COORDINATES: similar to AA sequence:RefSeq:WP_019975405.1
COORDINATES: similar to AA sequence:RefSeq:WP_007646974.1
COORDINATES: similar to AA sequence:RefSeq:WP_010600967.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010600966.1
COORDINATES: similar to AA sequence:RefSeq:WP_009410167.1
COORDINATES: similar to AA sequence:RefSeq:WP_004918596.1
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007340376.1
class I SAM-dependent DNA methyltransferase
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: protein motif:HMM:NF024491.2
phospholipase D-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011499281.1
type I restriction endonuclease subunit R