Pseudomonas monteilii strain B5 plasmid pSH5-1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.
Mercury methylation of Pseudomonas putida strain TGRB5
Submitted (25-JUL-2017) College of Resources and Environment, Southwest University, NO.2 Tiansheng Road, Chongqing, Chongqing 400715, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP022563.1.\nBacteria and source DNA available from Hong Shen.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2015\nAssembly Method :: Celera Assembler v. 8.0\nAssembly Name :: B5\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 166.0x\nSequencing Technology :: Illumina HiSeq; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 01:22:17\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,729\nCDSs (total) :: 5,627\nGenes (coding) :: 5,508\nCDSs (with protein) :: 5,508\nGenes (RNA) :: 102\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 76\nncRNAs :: 4\nPseudo Genes (total) :: 119\nCDSs (without protein) :: 119\nPseudo Genes (ambiguous residues) :: 0 of 119\nPseudo Genes (frameshifted) :: 30 of 119\nPseudo Genes (incomplete) :: 99 of 119\nPseudo Genes (internal stop) :: 9 of 119\nPseudo Genes (multiple problems) :: 17 of 119\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_003089110.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_021138877.1
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011911830.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
IS21-like element ISPst3 family helper ATPase IstB
COORDINATES: similar to AA sequence:RefSeq:WP_012080643.1
IS21-like element ISPst3 family transposase
AraC-type DNA-binding domain-containing proteins
COORDINATES: similar to AA sequence:RefSeq:WP_012080657.1
COORDINATES: similar to AA sequence:RefSeq:WP_003464991.1
COORDINATES: similar to AA sequence:RefSeq:WP_014834018.1
COORDINATES: similar to AA sequence:RefSeq:WP_000147566.1
COORDINATES: protein motif:HMM:NF012398.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009901602.1
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_086558120.1
Tn3-like element IS1071 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_008328818.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS91-like element ISPps1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_004896675.1
GO:0015109 - chromate transmembrane transporter activity [Evidence IEA]
GO:0015703 - chromate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017335982.1
COORDINATES: similar to AA sequence:RefSeq:NP_251253.1
COORDINATES: similar to AA sequence:RefSeq:WP_017335984.1
COORDINATES: similar to AA sequence:RefSeq:WP_025991973.1
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_010955146.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003150546.1
GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
putative toxin-antitoxin system toxin component, PIN family
COORDINATES: similar to AA sequence:RefSeq:WP_017335987.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004666649.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077977.1
IS21-like element ISPre4 family helper ATPase IstB
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012313160.1
outer membrane protein transport protein
COORDINATES: similar to AA sequence:RefSeq:WP_015060658.1
COORDINATES: similar to AA sequence:RefSeq:WP_007967594.1
COORDINATES: similar to AA sequence:RefSeq:WP_003151133.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_018310970.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_000741275.1
COORDINATES: similar to AA sequence:RefSeq:WP_011809177.1
COORDINATES: similar to AA sequence:RefSeq:WP_003100853.1
COORDINATES: similar to AA sequence:RefSeq:WP_016567451.1
COORDINATES: similar to AA sequence:RefSeq:WP_009682452.1
COORDINATES: similar to AA sequence:RefSeq:WP_004666733.1
COORDINATES: similar to AA sequence:RefSeq:WP_006401354.1
COORDINATES: similar to AA sequence:RefSeq:WP_008344329.1
COORDINATES: similar to AA sequence:RefSeq:WP_017461378.1
COORDINATES: similar to AA sequence:RefSeq:WP_004666727.1
COORDINATES: similar to AA sequence:RefSeq:WP_009682439.1
COORDINATES: similar to AA sequence:RefSeq:WP_009682438.1
COORDINATES: protein motif:HMM:NF033884.1
COORDINATES: similar to AA sequence:RefSeq:WP_009682435.1
DotH/IcmK family type IV secretion protein
COORDINATES: similar to AA sequence:RefSeq:WP_009682434.1
DotI/IcmL family type IV secretion protein
COORDINATES: similar to AA sequence:RefSeq:WP_009682433.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220836.1
COORDINATES: protein motif:HMM:NF012245.2
PAS domain-containing methyl-accepting chemotaxis protein
COORDINATES: similar to AA sequence:RefSeq:WP_012416727.1
GO:0015288 - porin activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006495918.1
GO:0016831 - carboxy-lyase activity [Evidence IEA]
Orn/Lys/Arg decarboxylase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005296088.1
GO:0015496 - putrescine:ornithine antiporter activity [Evidence IEA]
GO:0015822 - ornithine transport [Evidence IEA]; GO:0015847 - putrescine transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003824702.1
COORDINATES: similar to AA sequence:RefSeq:WP_001138014.1
COORDINATES: similar to AA sequence:RefSeq:WP_010211630.1
COORDINATES: similar to AA sequence:RefSeq:WP_009682530.1
COORDINATES: similar to AA sequence:RefSeq:WP_009682528.1
COORDINATES: similar to AA sequence:RefSeq:WP_009682527.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_009682526.1
COORDINATES: similar to AA sequence:RefSeq:WP_009682524.1
COORDINATES: similar to AA sequence:RefSeq:WP_016715325.1
COORDINATES: similar to AA sequence:RefSeq:WP_003424696.1
COORDINATES: similar to AA sequence:RefSeq:WP_017337063.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017682907.1
COORDINATES: similar to AA sequence:RefSeq:WP_007934002.1
COORDINATES: similar to AA sequence:RefSeq:WP_015026479.1
COORDINATES: similar to AA sequence:RefSeq:WP_004666710.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_015026461.1
COORDINATES: similar to AA sequence:RefSeq:WP_017707811.1
COORDINATES: similar to AA sequence:RefSeq:WP_020304266.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009682509.1
COORDINATES: similar to AA sequence:RefSeq:WP_009682508.1
COORDINATES: similar to AA sequence:RefSeq:WP_009682506.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004666787.1
COORDINATES: similar to AA sequence:RefSeq:WP_009682504.1
COORDINATES: protein motif:HMM:NF015397.2
TraI/MobA(P) family conjugative relaxase
COORDINATES: similar to AA sequence:RefSeq:WP_009682502.1
Members of this family include DotD of type IVB secretion systems and TraH of plasmid conjugative plasmid systems, both lipoproteins; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009682501.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009682500.1
COORDINATES: protein motif:HMM:NF038220.1
COORDINATES: similar to AA sequence:RefSeq:WP_009682498.1
COORDINATES: similar to AA sequence:RefSeq:WP_009682497.1
COORDINATES: protein motif:HMM:NF037421.2
COORDINATES: similar to AA sequence:RefSeq:WP_009682495.1
COORDINATES: similar to AA sequence:RefSeq:WP_005740376.1
COORDINATES: similar to AA sequence:RefSeq:WP_009682488.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009682487.1
COORDINATES: similar to AA sequence:RefSeq:WP_009682485.1
COORDINATES: similar to AA sequence:RefSeq:WP_011875779.1
COORDINATES: similar to AA sequence:RefSeq:WP_009682482.1
COORDINATES: protein motif:HMM:NF013311.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009682478.1
COORDINATES: protein motif:HMM:NF024498.2
COORDINATES: similar to AA sequence:RefSeq:WP_009682476.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011875771.1
COORDINATES: similar to AA sequence:RefSeq:WP_008344199.1
COORDINATES: similar to AA sequence:RefSeq:WP_003297486.1
COORDINATES: protein motif:HMM:TIGR02779.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003910 - DNA ligase (ATP) activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003089120.1
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific [Evidence IEA]
Hg(II)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009682418.1
mercuric transporter MerT family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003150552.1
GO:0045340 - mercury ion binding [Evidence IEA]
mercury resistance system periplasmic binding protein MerP
COORDINATES: similar to AA sequence:RefSeq:WP_003089113.1
GDCCVxC domain-containing (seleno)protein