Mycoplasmopsis gallopavonis strain NCTC10186 plasmid 3.
type: Entry
definition: Mycoplasmopsis gallopavonis strain NCTC10186 plasmid 3.
sequence version: NZ_LR215033.1
sequence date: 2022-12-16
sequence: sequence
division: CON
label: NZ_LR215033.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMEA104167171
keyword: RefSeq
source: Mycoplasmopsis gallopavonis (Mycoplasma gallopavonis)
organism: Mycoplasmopsis gallopavonis
taxonomy: Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasmopsis.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nLR215033.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/14/2022 17:07:50\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 851\nCDSs (total) :: 807\nGenes (coding) :: 789\nCDSs (with protein) :: 789\nGenes (RNA) :: 44\nrRNAs :: 4, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 3, 3 (5S, 16S, 23S)\ntRNAs :: 31\nncRNAs :: 3\nPseudo Genes (total) :: 18\nCDSs (without protein) :: 18\nPseudo Genes (ambiguous residues) :: 0 of 18\nPseudo Genes (frameshifted) :: 5 of 18\nPseudo Genes (incomplete) :: 14 of 18\nPseudo Genes (internal stop) :: 0 of 18\nPseudo Genes (multiple problems) :: 1 of 18\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 21969
topology: linear
so has quality: SO_0000987
location: 1..21969
location: region:1-21969:1
RO_0002162: 76629

NZ_LR215033
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMEA104167171
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
journal: Submitted (24-JAN-2019) WTSI, Pathogen Informatics, Wellcome Trust Sanger Institute, CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21969:1
position: 21969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21969:1:source
so part of: sequence
organism: Mycoplasmopsis gallopavonis
mol type: genomic DNA
strain: NCTC10186
serovar: not available: to be reported later
isolation source: Air sacs
host: Bird (Turkey)
culture collection: NCTC:10186
type material: type strain of Mycoplasma gallopavonis
plasmid: 3
collection date: 1900/1981

76629
type: Taxonomy
SIO_000068: taxonomy

EXC53_RS04055
type: Gene
subclass of: SO_0000704
RO_0002162: 76629
locus tag: EXC53_RS04055
old locus tag: NCTC10186_00827
so part of: sequence
location: complement(153..596)
location: region:153-596:-1
so has part: feature:153-596:-1:exon
subclass of: SO_0000010

position:153:-1
position: 153
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:596:-1
position: 596
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:153-596:-1:exon

EXC53_RS04055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 76629
locus tag: EXC53_RS04055
old locus tag: NCTC10186_00827
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MDIKVIETLGKGDQMSISKINVFNSDGTPAINVPLFKVLDHASWDYVNRQVDVIKQSINNLVRANGYDSGWNQPSTILGGKPEFSLVKVLEGEKLTKWADEVKTRKDPIEKNPDYNIYGYTLENKERKGWSYLSLFSDASVTYLTDI
SIO_010081: EXC53_RS04055
subclass of: SO_0000673
so part of: EXC53_RS04055
location: complement(153..596)
location: region:153-596:-1
so has part: feature:153-596:-1:exon

WP_129724771.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:153-596:-1:exon

EXC53_RS04060
type: Gene
subclass of: SO_0000704
RO_0002162: 76629
locus tag: EXC53_RS04060
old locus tag: NCTC10186_00828
so part of: sequence
location: complement(569..1696)
location: region:569-1696:-1
so has part: feature:569-1696:-1:exon
subclass of: SO_0000010

position:569:-1
position: 569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1696:-1
position: 1696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:569-1696:-1:exon

EXC53_RS04060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 76629
locus tag: EXC53_RS04060
old locus tag: NCTC10186_00828
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKVGDDFVLYAHLKNIKNNSENADQSELILQFNSGETRIDKKLEFFQFKQAIGYIGSIKPTTLSAGPENITLKDEKGNPIRGLASRDYQLYTEVYSGLIDILTAKYPHLLKDLNGPHVEQTLNKEGYYTYKVVDGPYKGMSDGDRIGLPLVLNALIENYEGISTDFLKYVGAHEYGHHYTLEGTQSLNNQKNSVVVGGLNTRGGVNVQSYFAYDAVKNYLDARTGLEIVRVDALGNETPNGEFINFKYHKIHSDEVFNETDQDIWGTANKNDDIFDLINNKQRRFLQNYETLNEAAKLRDVKVGDLFIANSFDRHSGTLNPYIEGPMSAFNNASDLGFEKLSTERVLNIVYDGKFQKFLMKLNLMEVWILKLLKH
SIO_010081: EXC53_RS04060
subclass of: SO_0000673
so part of: EXC53_RS04060
location: complement(569..1696)
location: region:569-1696:-1
so has part: feature:569-1696:-1:exon

WP_129724773.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:569-1696:-1:exon

EXC53_RS04065
type: Gene
subclass of: SO_0000704
RO_0002162: 76629
locus tag: EXC53_RS04065
old locus tag: NCTC10186_00829
so part of: sequence
location: complement(1882..2373)
location: region:1882-2373:-1
so has part: feature:1882-2373:-1:exon
subclass of: SO_0000010

position:1882:-1
position: 1882
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2373:-1
position: 2373
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1882-2373:-1:exon

EXC53_RS04065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 76629
locus tag: EXC53_RS04065
old locus tag: NCTC10186_00829
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MNSNHTEYTDSYDTSATRDKRPNLELFQGLLTPGRLIGQKFIVYKNDSPEHLKNITISEKEKVAQGLLLVLPYDITKGEFEDLKKANPKIYDQVQFSDFEPAIIKNVKKQALVDPAGKVTPISMKLDFEFTNDREERSKEFSHYYKEVPETLFDMQSLGFIVI
SIO_010081: EXC53_RS04065
subclass of: SO_0000673
so part of: EXC53_RS04065
location: complement(1882..2373)
location: region:1882-2373:-1
so has part: feature:1882-2373:-1:exon

WP_129724775.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1882-2373:-1:exon

EXC53_RS04070
type: Gene
subclass of: SO_0000704
RO_0002162: 76629
locus tag: EXC53_RS04070
old locus tag: NCTC10186_00830
so part of: sequence
location: complement(2454..3107)
location: region:2454-3107:-1
so has part: feature:2454-3107:-1:exon
subclass of: SO_0000010

position:2454:-1
position: 2454
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3107:-1
position: 3107
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2454-3107:-1:exon

EXC53_RS04070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 76629
locus tag: EXC53_RS04070
old locus tag: NCTC10186_00830
inference: COORDINATES: protein motif:HMM:NF012210.0
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: PDxFFG protein
translation: MSKKLSLKLKVLIASGLIAAGVGASYGAVWAYAQNSDEVKGSFPPFSKEALKNNYASIKEEGVLTPQLGILDPLKEKKVADLNEDATEFWFLNKPEERMDLDTFFQKYYEIYQEGFILEVKYASFSFFDEYVLAVRPKQFIDFSKWFMTNVAWGPDILTLESFRIVKGAEQRGNSITLGSHSTDKKNQVKLNSSLMLSLVHFQFLVHTQEEDLHQML
SIO_010081: EXC53_RS04070
subclass of: SO_0000673
so part of: EXC53_RS04070
location: complement(2454..3107)
location: region:2454-3107:-1
so has part: feature:2454-3107:-1:exon

WP_129724777.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2454-3107:-1:exon

EXC53_RS04075
type: Gene
subclass of: SO_0000704
RO_0002162: 76629
locus tag: EXC53_RS04075
old locus tag: NCTC10186_00831
so part of: sequence
location: complement(3177..6086)
location: region:3177-6086:-1
so has part: feature:3177-6086:-1:exon
subclass of: SO_0000010

position:3177:-1
position: 3177
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6086:-1
position: 6086
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3177-6086:-1:exon

EXC53_RS04075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 76629
locus tag: EXC53_RS04075
old locus tag: NCTC10186_00831
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKKSKLLVPLLSAAILPVSGILVACNDNSTASNNDAKYDKILQSTEQILNNINNSELASDLYINSNNELAEITSKYKKAKSNSEKETIIESLEKFSTRLLNDWIKKLSSILGNSEALNAAKDKAKQDAENNLASAKIDLEHVRAANENTISDLELKVAQLERDLKRSVQYNGESLQEEIKELTKDYLPRQLSGKLALLEAQTYLIDWYQAFIDYLQSMNVRDERTRETIASIVQNTEGLKQSTILAKQETEKTPEKYGTRRQFRADLAITMDRIKKIGDRYKNIFNYDVPRSTSKYLEALYKWRIENFRALKAAIEANDSSVYDDFNPNQTGQQTKDGLALTVGEFADLYANSLSRATTYAEQLFSYITLEEKYAKVVLHPQNLDEFSPFLKVRLKMTEYPLYYRLYDSEQTAKLDVYYARTIDSLRDFRRSEGYKYLNSIAYRKVYNQWDKYVQQSINYKYNGNANTYYEILGTFTDVLQGVQELAVPEEQVNAKKAEIEAKIEQVKQSVWSKILTINAKANQEDPDDSFTPYTDLKYNLRAKYSQANGLSQGTFIEAFDKYIAFLLAEKYVDNMIDLYNYWTLVGDDPKSDELEAILKLKTKSAKLEKRYKFAENDFEQNKLNKKFHEENIFPLFKNFSWPNFDSLSDEQQKLSAYKEAVKKLFEIYERIKNISDNFTLQGYDDWSDKDYFFQDAYESTYNQIKQANSELESKNSFSDVDASFINNMKETYEQRKLVVEEEYQAAQENYESKKAAYENSNEFDPRNYVVPSQELYAFIRQWNIKNRAELASLELNPETETDQKAVELFASYSSEWKFGHEDTSTRPYIKITNLDIDDIYNTEQGHDEEGNVIPEYTTDKVKANLLAAEKAYFDANMAYLEAKKANASNLADLKQDLVQKRSDYYSVLNDSHYGFSKSGYAKYTVSHYEKGQQVTLTPLQLASIYASEVATYQVLKELHAEYMDSENN
SIO_010081: EXC53_RS04075
subclass of: SO_0000673
so part of: EXC53_RS04075
location: complement(3177..6086)
location: region:3177-6086:-1
so has part: feature:3177-6086:-1:exon

WP_119572033.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3177-6086:-1:exon

EXC53_RS04080
type: Gene
subclass of: SO_0000704
RO_0002162: 76629
locus tag: EXC53_RS04080
old locus tag: NCTC10186_00832
so part of: sequence
location: complement(6494..8527)
location: region:6494-8527:-1
so has part: feature:6494-8527:-1:exon
subclass of: SO_0000010

position:6494:-1
position: 6494
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8527:-1
position: 8527
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6494-8527:-1:exon

EXC53_RS04080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 76629
locus tag: EXC53_RS04080
old locus tag: NCTC10186_00832
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MTSFKNAFNDFRALMKSLETNHLDNFYNLSKIFYDDEFAKFNTDMLTSEAIDKELELFANFSFILKDVIRNYQNYDDQQILAKYQKLEDLYFAKKKDYFQILIQNYLKILNARKKDLNNSFGSNEYYANKINEYLGNFNASYNQDATIDVLKQNLQDLTTHLSSFDEDIQEKHLALEAFKGSFNKITEIANSLKQRFSTFSEEIDSQINLPLADYALDIAKMSSNQILEHKNQVEELLNKINELSAKYEAQEDEKSAKIHELKRLIVETETFITNTKAIQFSDFNELLNTSLNNAKTINEDSDLETIKQTLINLTDNLALATNASREYQELLTNLLDQKTQIKSKLFSKDANLADLANYLNTWNQNFEIKLESLTKAQLKEFEVALNNFFRANNEIIAQIIKKHQTLVINYTNLKSSLNSLISMDNLSENLIRIKEDFLQNYAQINLSQTGNAELEKINTKLESFINEFKTFFKSDLLEMYIANKDFLATNNSNLSNQQLNFFESENNLNQNLSKLKELNNFMKEIISVHSNLDLGSLNEAQFDSLQNQFSEILNSEQLNNFLEYKNELNQKMEEFKNLWDLASEKYQTSNDPEIKENYEQNIQNLDRQSNLSLEKIAENTLKLHFFLSLEEHIVQPEQPKVQAQKSNYLLWVLLPIAVTLPILGIAGYFIFKKFKK
SIO_010081: EXC53_RS04080
subclass of: SO_0000673
so part of: EXC53_RS04080
location: complement(6494..8527)
location: region:6494-8527:-1
so has part: feature:6494-8527:-1:exon

WP_129724756.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6494-8527:-1:exon

EXC53_RS04085
type: Gene
subclass of: SO_0000704
RO_0002162: 76629
locus tag: EXC53_RS04085
old locus tag: NCTC10186_00833
so part of: sequence
location: 9178..10392
location: region:9178-10392:1
so has part: feature:9178-10392:1:exon
subclass of: SO_0000010

position:9178:1
position: 9178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10392:1
position: 10392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9178-10392:1:exon

EXC53_RS04085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 76629
locus tag: EXC53_RS04085
old locus tag: NCTC10186_00833
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
GO process: GO:0015074 - DNA integration [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: IS3 family transposase
translation: MLIFYIFKGEKMGKHFTEEQEKEIYNTFFQLGKKDAIELMYKYGAKAKDKYVKARLRRILKHYNFNMNKKPRKPGTGRSRKAKEQDINWNIFTREDLIEIAKRYREITKDKFKTEKVQEASNINMASYKLAILLYLCRQTISKHKRNNFAPKNKSRKIKYQDLIIDSFKQNRSKYGRQKLKYFILKHYKIDINERTLGRYMNALGLFCNVRKRKKLKESKNTSIIKENIVNRDYNDVYNRNIYATDVTYLPATKDAINNNVYLSVVIKHKTKEIISFSLSKFNDSKLIYKTFENVDFEKSFILHSDHCSTYTSDDFSRFIQNKGGIISLSKVGNSLDNRVVEYWFSNLKTELIRDLNIKAMTLNELEKVISNYVHWYNKFRIQSCLNWKTPYEYSMGLSNLINC
SIO_010081: EXC53_RS04085
subclass of: SO_0000673
so part of: EXC53_RS04085
location: 9178..10392
location: region:9178-10392:1
so has part: feature:9178-10392:1:exon

WP_129724594.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9178-10392:1:exon

EXC53_RS04090
type: Gene
subclass of: SO_0000704
RO_0002162: 76629
locus tag: EXC53_RS04090
old locus tag: NCTC10186_00834
so part of: sequence
location: complement(10378..12981)
location: region:10378-12981:-1
so has part: feature:10378-12981:-1:exon
subclass of: SO_0000010

position:10378:-1
position: 10378
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12981:-1
position: 12981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10378-12981:-1:exon

EXC53_RS04090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 76629
locus tag: EXC53_RS04090
old locus tag: NCTC10186_00834
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKKTYKLFLGSIIPSLTLPLVLVSSTNSNIPPQRNINEYQTSSLDITDTNLEFNDWMKYVDGQKRLGDLSIPGTHNSAMFSGWGAKWFFGQAWAKTQSRNFQNQLKSGIRFFDLRISTDMWIYHGNVGSNYDLKKVLKEFVTFLKAHPNEVILIRYKDENSDPKKMSSRDALEWKKEIVKTFENPEIRDYIYKNSSQDSFENPTLDSVRGKIFVLDNMHKNIWKNNFSYGAAWWSVLIDVQDEWNTTEQVKMQKIKETLNLSNNENNGNHLIINFTSRSKDNSKPYETHKEINKQTMAYLKANNILRTGVLIFDFPGDALLKRIVQTNYTYTQEELNRPNLLPRVNLNFFSPTAGENFIQANASLANLDLSVEILDTKKEVRTPVNVRIDINSNRIYLPNNLQVTDRIMITYNQKTIPNIYYPQPQKYNQTVKWVSVEKNSLFDRLLANLENKVREGRRSLIEITGLGSSETKLFTNYFARPLIQLKQNPTVTQESINQLRDLNLALKNNFDTWLNLLKKKKEVETKIQLLNQSLVSNYLNQNDFESFFQEINNQEAEYQRILSLNSLPTIAQWNSYFNFYQSADLKISFLNDIIAQNQAFNRDSFLNKLHLPNNLNWANQFYLNLIDSKLTLMKTNLVNSISNFSNDSKLSAKRTIENLNSQFVNFGNFVDSSSNQLSNALDSATNLSSVQKNFFHTDFEAALTSNRNSDVTSLIAKINQFNSFLANVETQIANYNQVLSSNYYNFASNIQKTNFTNWTNQLKANKSTWNYAELNNLIIKINNLVQEMQRNFESYEARKKQLQNEVNGLTYISDLEKQNFQNELESNRDLEQMEIKKEALITKNKENESLINFALSKLGQKKLTIY
SIO_010081: EXC53_RS04090
subclass of: SO_0000673
so part of: EXC53_RS04090
location: complement(10378..12981)
location: region:10378-12981:-1
so has part: feature:10378-12981:-1:exon

WP_129724779.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10378-12981:-1:exon

EXC53_RS04095
type: Gene
subclass of: SO_0000704
RO_0002162: 76629
locus tag: EXC53_RS04095
old locus tag: NCTC10186_00835
so part of: sequence
location: 13128..14498
location: region:13128-14498:1
so has part: feature:13128-14498:1:exon
subclass of: SO_0000010

position:13128:1
position: 13128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14498:1
position: 14498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13128-14498:1:exon

EXC53_RS04095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 76629
locus tag: EXC53_RS04095
old locus tag: NCTC10186_00835
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKKEFSINKTIEQIKTIYQELFDRAISQRTLLFLKNLCFIFLETSFDQTFLQRSFDQKNDPSKCDFKEEKNDHFEPIDETTLREILVTNLSQNGYIKTSNDPIRYKNYLKQIDLVNFIPSTWADNHEKFNSLKSAIYKNLRRAFKIQLISLIQNELQNNLEQKEFRKGFENFIKNKDIAEISNKVLIDALEQIEQRLFDWKHVNATFKNNQKEVVSPVSNLKVLSNNFFEDIYQRIKIANSEDPKFWKKTKKLTTWNGRFLIAFGLTFVLSTLFFEVFQGLSVWNESLSIKYLIYIGFGLLALLVLIGILLIFLYFKNKNYIKSYNISSNIEYKSIGKITKEHEQLIDFLDEVFQAQKLYQDEHSEAQKTNDFVWKISFDLTQIELSNELINQIEWFCSYLKIIRDNNDHPVFKNELILWEFHIAKSEKIKSFEDLEKIMDPKFINRNLISFEIQE
SIO_010081: EXC53_RS04095
subclass of: SO_0000673
so part of: EXC53_RS04095
location: 13128..14498
location: region:13128-14498:1
so has part: feature:13128-14498:1:exon

WP_119572158.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13128-14498:1:exon

EXC53_RS04100
type: Gene
subclass of: SO_0000704
RO_0002162: 76629
locus tag: EXC53_RS04100
old locus tag: NCTC10186_00836
so part of: sequence
location: complement(14518..17394)
location: region:14518-17394:-1
so has part: feature:14518-17394:-1:exon
subclass of: SO_0000010

position:14518:-1
position: 14518
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17394:-1
position: 17394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14518-17394:-1:exon

EXC53_RS04100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 76629
locus tag: EXC53_RS04100
old locus tag: NCTC10186_00836
inference: COORDINATES: protein motif:HMM:NF015210.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: DUF262 domain-containing protein
translation: MSTTNKEKNKYVFNYWKIGTNTNSYIETKLFNFLKSNWTKFQNNTLNFTQEELNKEDPKNAKNAVFMQAAKTLSFIGVLKEENKEYFWTTKFLNKFQKFDQSFLENKEQFIQEIYDFGSEELINKIDAYVEFLKQNYENSNDEEESDFRENLQKRILLADSNWIHSILIDFDVEGETLSEDNNWILEYKKIWNLPGVQKVQEKNYWKTLAKNTLNNKKSHINEKCKDILKVVNYLAHKNSEEVLFQNFQYTFDKNKKKEECKDYDKTIIRVDRLQTTIKTVLEYFNWLRKKHIYIPFYQRKYSWNKDYLERLIDDIELLADKYPSHSFKKGENYHFLSTITTKSKGHSNKNEIIDGQQRTITLIFTNFALFKYLCQRKIKDYEIPWIYDSMFNNSYDNQDYDNQDFVGKWIDNPSKLNGLLNFSKLFENNIEAIQDIWGGKKINGKESKPNKINQDEGEKQLKENLIYIYSYLSNKLDQKDDLYVKDFVERLLYGFVINHVEVQEGASEQIFERMNLMSKKLNNLEMLKAYIYERLINKDLEDKEIQINLENFMQLFYSFFIKGKPKAENLEVTESPNLKLFTTYLNNKYELKMNSNYEYSPLYIIKKFLEIHSNEAKDDSWLEALLLEKLKFQYSLIKNQEHFNNWKNDFDKFKKIYPKREKTSNPDLIEWLFPFVSMASKGNVTVFLPLVIFILDSFEILDKKIEGGETKKLSIWREVIKLLFEIERFTFIWKTAKFEGQSLSRGVYILIDKLKKESNLTAQALRKGLFELVFNNQKVLLVDDKFILDDEFKLTIYNEIDNNFKNNVDSKSRNSEYTELMFRIIWYLKNSRNSFPRLNSWWHIGEFEVLFKEPSWDHFYATNSKIKNLDIESNEDKDKLINSIGNGFILQSSLNSKYKNNSVEEKYDNLKKQTGIFLSFVNSQEGLEPLSKEWNSEKIEKRRDDIVELIKEIYLKS
SIO_010081: EXC53_RS04100
subclass of: SO_0000673
so part of: EXC53_RS04100
location: complement(14518..17394)
location: region:14518-17394:-1
so has part: feature:14518-17394:-1:exon

WP_119572157.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14518-17394:-1:exon

EXC53_RS04105
type: Gene
subclass of: SO_0000704
RO_0002162: 76629
gene: dcm
locus tag: EXC53_RS04105
old locus tag: NCTC10186_00837
so part of: sequence
location: complement(17397..18638)
location: region:17397-18638:-1
so has part: feature:17397-18638:-1:exon
subclass of: SO_0000010

position:17397:-1
position: 17397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18638:-1
position: 18638
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17397-18638:-1:exon

EXC53_RS04105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 76629
gene: dcm
locus tag: EXC53_RS04105
old locus tag: NCTC10186_00837
EC number: 2.1.1.37
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020002777.1
GO function: GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]
GO process: GO:0006304 - DNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: DNA (cytosine-5-)-methyltransferase
translation: MSKIKVFETFSGIGAQHKSLDWVNKNLQFKNKFEVVATADWDIRAIIAYAAIHNKLKIDEIEKILLKNNIKNEEELNSYLNKHVFSRDSKNPIKSIINQKEDLKKILASANFINKNYSDIKTVTGEVLDNLKIDLLTYSFPCQGLSVASMGRDKGIKNKESTSHLIWEIGRILEESNHKPKYLLLENVRGLVTKYSHEYEEWKHFLSNLGYKTFTGILNASNHGSLQNRERVFAISVLKDYKTPFNNDEEYLLYLNKIGQKYVLNDIEERKKKYFSIFDLNNKNIKEAWSALINDTPSRKKVIDSCKNLSLADPSYKINTLTTKQDRIPNAGYIPISHNFEKKLQYRFITPREAYKIMGFEDLDFNKLVPFVEEGILNNDCLWRQAGNSIDVNVLKRIFEVIGIIDEMNKNKR
SIO_010081: EXC53_RS04105
subclass of: SO_0000673
so part of: EXC53_RS04105
location: complement(17397..18638)
location: region:17397-18638:-1
so has part: feature:17397-18638:-1:exon

WP_119572156.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17397-18638:-1:exon

EXC53_RS04110
type: Gene
subclass of: SO_0000704
RO_0002162: 76629
locus tag: EXC53_RS04110
old locus tag: NCTC10186_00838
so part of: sequence
location: 18963..20138
location: region:18963-20138:1
so has part: feature:18963-20138:1:exon
subclass of: SO_0000010

position:18963:1
position: 18963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20138:1
position: 20138
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18963-20138:1:exon

EXC53_RS04110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 76629
locus tag: EXC53_RS04110
old locus tag: NCTC10186_00838
inference: COORDINATES: protein motif:HMM:NF019887.2
GO function: GO:0016787 - hydrolase activity [Evidence IEA]
GO process: GO:0008152 - metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: Cof-type HAD-IIB family hydrolase
translation: MKNIKKTFQVTNYWFNKIVSGTKRIEIRLNTPERQNLKVGDLINIKNEETNHFQIAQITKIEQFKSFESLYKSYNPEILGYLPDEKFDFHDMYKHYKNEDEQKYGVLAFSFQLLDLDLNKIDNFVFDMDGTLLDEESNLREKNLEAILKLQKMGKKIIIATGRPYYTLQKAINNFPIDYPIITSNGAMLYDNQTHELVEYTAMPKKSAKLMFQKLIELNYEFVIYTTNGMLGHETNASGFFCKRNHYNFLKPQFYQQIDQTLDIDQYQVCKFLILTESRPKKEMQQIEALANSLEGLHGLYSRFDMYDVMGQSASKGNGLYFLAQKEGLDLSRTICFGDSENDISMFEVVKYSASMANGLEKIKDYALLEAPDHNTDWISEFLEKNFKVKI
SIO_010081: EXC53_RS04110
subclass of: SO_0000673
so part of: EXC53_RS04110
location: 18963..20138
location: region:18963-20138:1
so has part: feature:18963-20138:1:exon

WP_119572155.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18963-20138:1:exon

EXC53_RS04115
type: Gene
subclass of: SO_0000704
RO_0002162: 76629
locus tag: EXC53_RS04115
old locus tag: NCTC10186_00839
so part of: sequence
location: 20188..21402
location: region:20188-21402:1
so has part: feature:20188-21402:1:exon
subclass of: SO_0000010

position:20188:1
position: 20188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21402:1
position: 21402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20188-21402:1:exon

EXC53_RS04115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 76629
locus tag: EXC53_RS04115
old locus tag: NCTC10186_00839
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
GO process: GO:0015074 - DNA integration [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: IS3 family transposase
translation: MLIFYIFKGEKMGKHFTEEQEKEIYNTFFQLGKKDAIELMYKYGAKAKDKYVKARLRRILKHYNFNMNKKPRKPGTGRSRKAKEQDINWDIFTREDLIEIAKRYREITKDKFKTEKVQEASHINMASYKLAILLYLCRQTISKHKRNNFAPRIKSRKIKYQDLIIDSFKQNRSKYGRQKLKYFILKHYKIDINERTLGRYMNALGLFCNIRKRKKLKEVKNTSVIKENIVNRDYNDVDNRNIYATDVTYLPATKDAINNNVYLSVVIKHKTKEIISFSLSKFNDSKLIYKTFENVDFEKSFILHSDHCSTYTSDDFSRFIQNKGGIISLSKVGNSLDNRVVEYWFSNLKTELIRDLNIKAVTLSELEKVISNYVHWYNKFRIQSCLNWKTPYEYSMGLSNLINC
SIO_010081: EXC53_RS04115
subclass of: SO_0000673
so part of: EXC53_RS04115
location: 20188..21402
location: region:20188-21402:1
so has part: feature:20188-21402:1:exon

WP_129724487.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20188-21402:1:exon

EXC53_RS04260
type: Gene
subclass of: SO_0000704
RO_0002162: 76629
locus tag: EXC53_RS04260
old locus tag: NCTC10186_00840
so part of: sequence
location: 21514..21657
location: region:21514-21657:1
so has part: feature:21514-21657:1:exon
subclass of: SO_0000010

position:21514:1
position: 21514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21657:1
position: 21657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21514-21657:1:exon

EXC53_RS04260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 76629
locus tag: EXC53_RS04260
old locus tag: NCTC10186_00840
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MSAGQIIGLVVLAIIILLILFILIPCIKIVSEKDFIIIQRFVNITQH
SIO_010081: EXC53_RS04260
subclass of: SO_0000673
so part of: EXC53_RS04260
location: 21514..21657
location: region:21514-21657:1
so has part: feature:21514-21657:1:exon

WP_165261076.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21514-21657:1:exon