Leuconostoc kimchii IMSNU 11154 plasmid LkipL4719, complete sequence.
type: Entry
definition: Leuconostoc kimchii IMSNU 11154 plasmid LkipL4719, complete sequence.
sequence version: NC_014133.1
sequence date: 2023-04-11
sequence: sequence
division: CON
label: NC_014133.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02603394
keyword: RefSeq
source: Leuconostoc kimchii IMSNU 11154
organism: Leuconostoc kimchii IMSNU 11154
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Leuconostoc.
reference: 1
references: 20494991
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP001755.1.\nStrain IMSNU11154 is available from Jongsik Chun (jchun@snu.ac.kr)\nat Institute of Microbiology, Seoul National University.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/11/2023 01:01:14\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,144\nCDSs (total) :: 2,061\nGenes (coding) :: 2,042\nCDSs (with protein) :: 2,042\nGenes (RNA) :: 83\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 68\nncRNAs :: 3\nPseudo Genes (total) :: 19\nCDSs (without protein) :: 19\nPseudo Genes (ambiguous residues) :: 0 of 19\nPseudo Genes (frameshifted) :: 10 of 19\nPseudo Genes (incomplete) :: 7 of 19\nPseudo Genes (internal stop) :: 4 of 19\nPseudo Genes (multiple problems) :: 2 of 19\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 21924
topology: circular
so has quality: SO_0000988
location: 1..21924
location: region:1-21924:1
RO_0002162: 762051

NC_014133
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02603394
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence analysis of Leuconostoc kimchii IMSNU 11154
author: Oh, H.M.
author: Cho, Y.J.
author: Kim, B.K.
author: Roe, J.H.
author: Kang, S.O.
author: Nahm, B.H.
author: Jeong, G.
author: Han, H.U.
author: Chun, J.
journal: J Bacteriol
volume: 192
issue: 14
pages: 3844-3845
year: 2010
pubmed: 20494991

20494991
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Oh, H.-M.
author: Chun, J.
journal: Submitted (21-SEP-2009) Department of Biological Sciences, Institute of Microbiology, Seoul National University, Seoul 151-742, Korea

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21924:1
position: 21924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21924:1:source
so part of: sequence
organism: Leuconostoc kimchii IMSNU 11154
mol type: genomic DNA
strain: IMSNU 11154
type material: type strain of Leuconostoc kimchii
plasmid: LkipL4719

762051
type: Taxonomy
SIO_000068: taxonomy

LKI_RS00195
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS00195
old locus tag: LKI_10521
so part of: sequence
location: 325..915
location: region:325-915:1
so has part: feature:325-915:1:exon
subclass of: SO_0000010

position:325:1
position: 325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:915:1
position: 915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:325-915:1:exon

LKI_RS00195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS00195
old locus tag: LKI_10521
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017369153.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MVQQIVLPIKDSNVLKMVQDTLLDSFRAGRRNYTVFQVGKATLLRVSDVMTLKKSDVYNPDGSVKNTAFIHDKKTGKANTLYLKPVQQDLLQYHDWLVQENINSEWLFPSTAHHDRHITEKQFYKVMARVGDLLGINYLGTHTMRKTGAYRVYTQSNYNIGLVMHLLNHSSEAMTLTYLGLDQASRETMLDQIDFG
SIO_010081: LKI_RS00195
subclass of: SO_0000673
so part of: LKI_RS00195
location: 325..915
location: region:325-915:1
so has part: feature:325-915:1:exon

WP_013102111.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:325-915:1:exon

LKI_RS00200
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS00200
old locus tag: LKI_10526
so part of: sequence
location: 1006..1194
location: region:1006-1194:1
so has part: feature:1006-1194:1:exon
subclass of: SO_0000010

position:1006:1
position: 1006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1194:1
position: 1194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1006-1194:1:exon

LKI_RS00200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS00200
old locus tag: LKI_10526
inference: COORDINATES: similar to AA sequence:RefSeq:WP_086558233.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MKAKRYSTEFKSSIVDLYNEGRSVNSLANEYHLAVQTVTGWVKNLKSIPTALILKIVQFIDF
SIO_010081: LKI_RS00200
subclass of: SO_0000673
so part of: LKI_RS00200
location: 1006..1194
location: region:1006-1194:1
so has part: feature:1006-1194:1:exon

WP_013102112.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1006-1194:1:exon

LKI_RS10935
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS10935
old locus tag: LKI_10531
so part of: sequence
location: complement(1226..1369)
location: region:1226-1369:-1
so has part: feature:1226-1369:-1:exon
subclass of: SO_0000010

position:1226:-1
position: 1226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1369:-1
position: 1369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1226-1369:-1:exon

LKI_RS10935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS10935
old locus tag: LKI_10531
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNKKVSDLNNQLTNQNQSTDADMAQAIKDAQDTRDKSDQIVNQYVEK
SIO_010081: LKI_RS10935
subclass of: SO_0000673
so part of: LKI_RS10935
location: complement(1226..1369)
location: region:1226-1369:-1
so has part: feature:1226-1369:-1:exon

WP_013102113.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1226-1369:-1:exon

LKI_RS00210
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS00210
old locus tag: LKI_10536
so part of: sequence
location: 1558..2466
location: region:1558-2466:1
so has part: feature:1558-2466:1:exon
subclass of: SO_0000010

position:1558:1
position: 1558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2466:1
position: 2466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1558-2466:1:exon

LKI_RS00210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS00210
old locus tag: LKI_10536
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002345766.1
GO function: GO:0046873 - metal ion transmembrane transporter activity [Evidence IEA]
GO process: GO:0030001 - metal ion transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: magnesium transporter CorA family protein
translation: MIKPEKTINGTKWIETIQINAEERATLEDQYGIDEDIIEYVTDNDESTNYVYDINEDDQLFIFLAPYALDKDALRYITQPFGMLLHKGVLFTFNQSDIPEVNTALYSALDNPEVKSVDAFILETLFTVVDSFIPISRAITKKRNYLDKMLNRKTKNSDLVSLSYLQQTLTFLSSAVQINLSELDRLPKTHFGVGADQDKIDLFEDVKIEGEQVQRMFEIETQVVDRIDHTFNSLANNNLNDTMKFLTIWSLTMAVPTIITGFYGMNVKLPLAGMQYAWMLTLGISVALIVAMLIMLKVWRKM
SIO_010081: LKI_RS00210
subclass of: SO_0000673
so part of: LKI_RS00210
location: 1558..2466
location: region:1558-2466:1
so has part: feature:1558-2466:1:exon

WP_013102114.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1558-2466:1:exon

LKI_RS11085
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS11085
pseudo: true
so part of: sequence
location: <2574..2713
location: region:2574-2713:1
so has part: feature:2574-2713:1:exon
subclass of: SO_0000010

position:2574:1
position: 2574
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:2713:1
position: 2713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2574-2713:1:exon

LKI_RS11085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS11085
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005917937.1
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: site-specific integrase
SIO_010081: LKI_RS11085
subclass of: SO_0000673
so part of: LKI_RS11085
location: <2574..2713
location: region:2574-2713:1
so has part: feature:2574-2713:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2574-2713:1:exon

LKI_RS11090
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
gene: mobV
locus tag: LKI_RS11090
old locus tag: LKI_10541
pseudo: true
so part of: sequence
location: <3229..3678
location: region:3229-3678:1
so has part: feature:3229-3678:1:exon
subclass of: SO_0000010

position:3229:1
position: 3229
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:3678:1
position: 3678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3229-3678:1:exon

LKI_RS11090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
gene: mobV
locus tag: LKI_RS11090
old locus tag: LKI_10541
inference: COORDINATES: protein motif:HMM:NF041497.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: MobV family relaxase
SIO_010081: LKI_RS11090
subclass of: SO_0000673
so part of: LKI_RS11090
location: <3229..3678
location: region:3229-3678:1
so has part: feature:3229-3678:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3229-3678:1:exon

LKI_RS11095
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS11095
old locus tag: LKI_10546
so part of: sequence
location: 3691..4182
location: region:3691-4182:1
so has part: feature:3691-4182:1:exon
subclass of: SO_0000010

position:3691:1
position: 3691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4182:1
position: 4182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3691-4182:1:exon

LKI_RS11095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS11095
old locus tag: LKI_10546
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLPFYEQGILNNKTLPFENVAEIKKYNDQFNALKNELADVEENIRAKQAVLKITEQALTEVDLAEKQIDDFKQALSKNLFGKTVLKPDDLDRFKNVVATMKKATLQSQHETEELKQTLGQVNAQLADIQSDYQNLKETHQALQQRQREQQQLDYAMRDMLKND
SIO_010081: LKI_RS11095
subclass of: SO_0000673
so part of: LKI_RS11095
location: 3691..4182
location: region:3691-4182:1
so has part: feature:3691-4182:1:exon

WP_013102116.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3691-4182:1:exon

LKI_RS00225
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS00225
old locus tag: LKI_10556
so part of: sequence
location: 5223..6614
location: region:5223-6614:1
so has part: feature:5223-6614:1:exon
subclass of: SO_0000010

position:5223:1
position: 5223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6614:1
position: 6614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5223-6614:1:exon

LKI_RS00225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS00225
old locus tag: LKI_10556
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010279596.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NEAT domain-containing protein
translation: MKKNKVLMLAGTIAVSGVVLLNGDVSVAADTTGVTTVTTAATSNYQNGTYTATAALYKSGTAVSSMMSSMVNSQADVTIKNQTATITFTFGELSNANMVKSWAIDGVEATQSGQTFTVAIPVVDLSKTLQSKIHIETMIGSVPFSETQPVDLTVTDLKLVARDPDEVAAEQAAAEKAAADKAAADKAAAEKAAVDKAAAEKAAADKAAAEKAAADKAAADKAAAEKAAADKAAADKAAAEKAAADKAAAEKAKQAAKAKVEQEATKNSQNGTYTATAKLYKSGTTDDSMMASMVSPTAYIVIKDGQATITLTFKDMATINMVKTWVIDGVSAVKSGQSVVIVLPTSELGKTLKSTIHVETMLGTLPFNETQPVDLKLGNLERIPSGSMSDNPSNPSNLPNNYVSPNQATGHDVPLTAQLSSTSKLPNTAATNTATNEMTTAPLLAALVSGVLALGIWLKKVLR
SIO_010081: LKI_RS00225
subclass of: SO_0000673
so part of: LKI_RS00225
location: 5223..6614
location: region:5223-6614:1
so has part: feature:5223-6614:1:exon

WP_013102118.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5223-6614:1:exon

LKI_RS00230
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS00230
old locus tag: LKI_10561
so part of: sequence
location: 6668..7351
location: region:6668-7351:1
so has part: feature:6668-7351:1:exon
subclass of: SO_0000010

position:6668:1
position: 6668
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7351:1
position: 7351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6668-7351:1:exon

LKI_RS00230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS00230
old locus tag: LKI_10561
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004903428.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NEAT domain-containing protein
translation: MTLTQTVSADTYSVPFRVVKDGTTETSVADQYFQKPATVAIDGDHYVVIMTIKTTHDLGLFPVSVTDFNGQTPAISRTTQGNTDYYQYQFTATNLDTRLDGHMNVNIQAIRYNHYYGYGVVFDTSSLPKIGEDKEPASSSASSTNATSESTGSSSTSSSQSASSTSSQASSSSKKLPVKVVPHVSVSKKTTKKASPTKTKKIILWPWLLVIVVGIATVILFERQSRK
SIO_010081: LKI_RS00230
subclass of: SO_0000673
so part of: LKI_RS00230
location: 6668..7351
location: region:6668-7351:1
so has part: feature:6668-7351:1:exon

WP_242651950.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6668-7351:1:exon

LKI_RS00235
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS00235
old locus tag: LKI_10566
so part of: sequence
location: 7719..8624
location: region:7719-8624:1
so has part: feature:7719-8624:1:exon
subclass of: SO_0000010

position:7719:1
position: 7719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8624:1
position: 8624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7719-8624:1:exon

LKI_RS00235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS00235
old locus tag: LKI_10566
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010278849.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-binding cassette domain-containing protein
translation: MALLEVKNVSKKYGARTAMDQVSFDVEAGHIVGLIGPNGAGKSTTMRAITGLMSYSSGTISFDGQPVTFSNHQALDKIGNLIEYPSIYPNLTALEHLKLYAMDTTSPADFKMLMHKTQIDGDNFGKRKAKNFSLGMKQRLGIAIALIRNPKLVILDEPMNGLDPQSVHDLRELIRSLADEGTAFLISSHLLDELQKLVDDVVIINHGKIIEKDTMSNFFSHDKVRWTVDTNDNEAALLVVQEHNWQASIDDGDLQITGAESLQEVISAINRANLKILTLNTITGNLEKSLLDMLAADDKGE
SIO_010081: LKI_RS00235
subclass of: SO_0000673
so part of: LKI_RS00235
location: 7719..8624
location: region:7719-8624:1
so has part: feature:7719-8624:1:exon

WP_041773468.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7719-8624:1:exon

LKI_RS00240
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS00240
old locus tag: LKI_10571
so part of: sequence
location: 8628..9395
location: region:8628-9395:1
so has part: feature:8628-9395:1:exon
subclass of: SO_0000010

position:8628:1
position: 8628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9395:1
position: 9395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8628-9395:1:exon

LKI_RS00240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS00240
old locus tag: LKI_10571
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004914851.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter permease
translation: MLTLMKQEYYKAFKQNKLYIWLILSFAFPIAIIGIFKSQRTMASVINLGQALLYVQMAGIIITALSVSQEFGFGTIRPLLSRRFSRGSVFVSKLLLNLSVYIGLFVTAFIGTVLAVALFIPNYDFSKSLGYTGNSWQTMGIGMLDTAIQMIFVAALVLMITNLVKSSGAAIGLGVVMIVATPILSAISLKLIDLAPFLKWNPFNIYLGMSNIGMLSPNILKQAMHISQNGVIVAYLIYIALVYGIAYLIFKKRSV
SIO_010081: LKI_RS00240
subclass of: SO_0000673
so part of: LKI_RS00240
location: 8628..9395
location: region:8628-9395:1
so has part: feature:8628-9395:1:exon

WP_013102121.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8628-9395:1:exon

LKI_RS00245
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS00245
old locus tag: LKI_10576
so part of: sequence
location: 9918..10784
location: region:9918-10784:1
so has part: feature:9918-10784:1:exon
subclass of: SO_0000010

position:9918:1
position: 9918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10784:1
position: 10784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9918-10784:1:exon

LKI_RS00245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS00245
old locus tag: LKI_10576
EC number: 3.1.-.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013102122.1
GO function: GO:0004519 - endonuclease activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HNH endonuclease signature motif containing protein
translation: MDKNNLLITGDVYSNAQIMEIFRVSNSGGIRFSTKTRSLVIFSFHQSVNQKDVPYQDSWEKDTLHYTGQGKEGDQALTRNNKKIVEANQDNITIHLFESFVSREYIYRGIVYLSNNPYKVSELDANHNYRLVYKFPLTIKNGNGELPLSIIQSHTIQQDKHLQKLPQSKLAEMAQEISRSNHEFHKNNPNDKASSRFVNTISFERSPYIANYVKHIANGYCSLCEQLAPFLDKYNQPFLHAHHINYLSDGGEDTIENCIAVCPNCHAKIHALNDPKDKEILLSKVRNR
SIO_010081: LKI_RS00245
subclass of: SO_0000673
so part of: LKI_RS00245
location: 9918..10784
location: region:9918-10784:1
so has part: feature:9918-10784:1:exon

WP_013102122.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9918-10784:1:exon

LKI_RS00250
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS00250
old locus tag: LKI_10581
so part of: sequence
location: 10788..11378
location: region:10788-11378:1
so has part: feature:10788-11378:1:exon
subclass of: SO_0000010

position:10788:1
position: 10788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11378:1
position: 11378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10788-11378:1:exon

LKI_RS00250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS00250
old locus tag: LKI_10581
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017369153.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MVQQIVLPIKDSNVLKMVQDTLLDSFRAGRRNYTIFQVGKATLLRVSDVMTLKKSDVYNPDGSVKHTAFIHDKKTGKANTLYLKPVQQDLLQYHDWLVQENINSDWLFPSTAHPDRHITEKQFYKVMARVGDLLGINYLGTHTMRKTGAYRVHTQSNYNIGLVMHLLNHSSEAMTLTYLGLDQASRETMLDQIDFG
SIO_010081: LKI_RS00250
subclass of: SO_0000673
so part of: LKI_RS00250
location: 10788..11378
location: region:10788-11378:1
so has part: feature:10788-11378:1:exon

WP_013102123.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10788-11378:1:exon

LKI_RS00255
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS00255
old locus tag: LKI_10586
so part of: sequence
location: 11384..11824
location: region:11384-11824:1
so has part: feature:11384-11824:1:exon
subclass of: SO_0000010

position:11384:1
position: 11384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11824:1
position: 11824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11384-11824:1:exon

LKI_RS00255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS00255
old locus tag: LKI_10586
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010385466.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNTTVIKRRLYLADLEVEATDVYKQVNSSNVDTSGNVKITLPENVDNSGSVIFTLPDTATNQNAETLDNSGSVKITHNLYNTNNLDTNRYYKETAQLDFSTANFSNAQIEKQNQDIVANASEFLVSNGNSGKIPLEAETFNEKPFN
SIO_010081: LKI_RS00255
subclass of: SO_0000673
so part of: LKI_RS00255
location: 11384..11824
location: region:11384-11824:1
so has part: feature:11384-11824:1:exon

WP_013102124.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11384-11824:1:exon

LKI_RS00260
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
gene: mobV
locus tag: LKI_RS00260
old locus tag: LKI_10591
so part of: sequence
location: 12151..13386
location: region:12151-13386:1
so has part: feature:12151-13386:1:exon
subclass of: SO_0000010

position:12151:1
position: 12151
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13386:1
position: 13386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12151-13386:1:exon

LKI_RS00260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
gene: mobV
locus tag: LKI_RS00260
old locus tag: LKI_10591
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004906025.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobV family relaxase
translation: MAHLKKNTRGAVPGLAVHFERKTDHHTNKEIDVSKTYLNQDLMEDGSDMLSRFNERLNDVYCMRRDDVKALATWVVTLPEELAEAPYEQQSAFFEATTNFLNERYGQENAVAAVVHYDETNPHLHYAFVPVVFDDKKARYKVSAKEVLTRHDLQTFHDDLDQHLKKELPFYEHGILNNKTLPFENVAEIKKYNDQFNALKTELADIEDNIRAKQAVLKITDQALTEVDLAEKQIDAFKQDLSKNLFGKTVLKPDDLDRFKSVLATMKKATLQSKHETEELKQTLGQVKAQLADVQADYQNLKETHQALQKRQREQQQLDYAMRDMLKNDYGVDKLSHTDVEARYVLYKLDHEELTQNKKVAQSWLKTLTTARADPDTQIAPTRLDRGIEQVKALINRIIELTRDLFKGPSL
SIO_010081: LKI_RS00260
subclass of: SO_0000673
so part of: LKI_RS00260
location: 12151..13386
location: region:12151-13386:1
so has part: feature:12151-13386:1:exon

WP_013102125.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12151-13386:1:exon

LKI_RS00265
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS00265
old locus tag: LKI_10596
so part of: sequence
location: 13884..15041
location: region:13884-15041:1
so has part: feature:13884-15041:1:exon
subclass of: SO_0000010

position:13884:1
position: 13884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15041:1
position: 15041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13884-15041:1:exon

LKI_RS00265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS00265
old locus tag: LKI_10596
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014335299.1
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RepB family plasmid replication initiator protein
translation: MTIIPEESKTRQVQTLNELSKRKVVEHNSLITSIAKMDKTPLKMFELAVSLIDTDNPPEDQTVYLSKQELFAFFKVDDNDKHSRFKEAIEKMQKQAFFQIKKEQDKGFKFVSIVPIPYVEWTDYHDEVLIRFSPEIMPYLINLKTNFTQHALSEISELNSKYAIVLYRWLSMNYNQYEHYSVKGGRREEQVQSYRNPEMSIRDLREMTDTIDEYQDFRNFDKWILKNPLDEITEHTSLQVTYEKVKKGRSIDSIVFHITKKQVADDSSYKLDDPVYIEGKILQEETEDMLTVKAIKSPYTKLLMEQFLLSYIDLTDTTILSGLQKNVYPLYDELKELRGLKGVKEHLAYIRDKQDDYSKKNIAKYLKKSIEQYLPIVKRQDIDHE
SIO_010081: LKI_RS00265
subclass of: SO_0000673
so part of: LKI_RS00265
location: 13884..15041
location: region:13884-15041:1
so has part: feature:13884-15041:1:exon

WP_013102126.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13884-15041:1:exon

LKI_RS00270
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS00270
old locus tag: LKI_10601
so part of: sequence
location: 15034..15600
location: region:15034-15600:1
so has part: feature:15034-15600:1:exon
subclass of: SO_0000010

position:15034:1
position: 15034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15600:1
position: 15600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15034-15600:1:exon

LKI_RS00270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS00270
old locus tag: LKI_10601
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013102127.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MSENLKTIRELAEELGVSKQAIQYHIKSLTNKTRQTNDKGIVVLSLEEQHFIRSKVDKQTNKNKTNKQTNDKQTDKETKWDIHNYLISELDEVKKNRDKQLAVKDKQLENKDSQIAQMQNLLDQQQRLALQDKQLLEEYKAEIKDLKALTMAPHDDGEKEVTSDKQPEPENSTPESQPKPKKWWRFGK
SIO_010081: LKI_RS00270
subclass of: SO_0000673
so part of: LKI_RS00270
location: 15034..15600
location: region:15034-15600:1
so has part: feature:15034-15600:1:exon

WP_013102127.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15034-15600:1:exon

LKI_RS00275
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS00275
old locus tag: LKI_10606
so part of: sequence
location: 15633..18605
location: region:15633-18605:1
so has part: feature:15633-18605:1:exon
subclass of: SO_0000010

position:15633:1
position: 15633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18605:1
position: 18605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15633-18605:1:exon

LKI_RS00275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS00275
old locus tag: LKI_10606
EC number: 3.1.21.3
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010010578.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0009035 - type I site-specific deoxyribonuclease activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type I restriction endonuclease subunit R
translation: MAEDKFEQALIDKLKSEGWEYLTDYSGVTVDRLYDHWRDILNANNRKRLEDTPLSDNEFEQVKLELTKNKTPYDAQLMLAGAGGVGTVPLNRDDGTQLELEIFYGDEVAGGRSRYEVVNQITFTDLATSLSSKRRIDIMLLINGLPVAHIEEKDESLQNQWNAFEQFQKYDGDGMYTGLFSFVQVQFVLSQNSAHYFARPKSSDSYNRDFAFGWRDDAGKDVTNTMTFIHEVMGIPALHRLVTVNMIPDAANDNLMVMRSYQIQATRQILDRMREMDQNDVIEKEGGYVWHTTGSGKTVTSFKVAQLLASRPRVEDVLFIVDRVDLVNQTYENFKSFAYKTFENRIQVVNGSELKRALKHDNTAHIYLITVQGLDKAIKSGLASNRRMVILMDEAHRSASGDAVSRIKQALPKTTWFGFTGTPNFYSDEVHDVKTSKDISTYDIFGPRLHRYTIKDAIGDGNVLGFDVTYYETDFEHDMDSGLTEKELEKEVYASLPFRQAVVADIQRNWATNASGPINMGVREPNQFQGMLAVSGKQAVASYYSLFKQLAPELRVAMTYSRDEANGTGASDLQAALKQAMQDYMTFYGTRNFLEDKDPQRAYLNDMTKRIARKKPYNKGNDADRLDLIIVSDQLLTGFDSKFVNIIYMDKILGEGPLIQAMSRTNRTIDKTAKPHGKVRFYRQGAVMEEKVKDALVIYTKGGNDTLADAGNTPDDQEQKELFDEGILAPKAADKIIDLNPQIKRLQQLAADDFSQMPRSEKEQVEFAVTAAQVNSQVQQLVQQGYVLGNSVDGPEGPITLGIESATQLSSLQARMNDVNEVLPADKQVDLTNIKLVLQSFANEIIDYDKLVDLLNAYMDEVSFANRAAVEEHVQPLDQDNREEIGQVLDGIEQGEYTEPFTTETLKSVRKAIRTAQQDLKIYKWAADHDYNGNDILAAYELYRPGIPLVDNTALNQYLQDLESRLDIGFFELADFEESLLNYFAKITKK
SIO_010081: LKI_RS00275
subclass of: SO_0000673
so part of: LKI_RS00275
location: 15633..18605
location: region:15633-18605:1
so has part: feature:15633-18605:1:exon

WP_013102128.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15633-18605:1:exon

LKI_RS00280
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS00280
old locus tag: LKI_10611
so part of: sequence
location: 18633..20225
location: region:18633-20225:1
so has part: feature:18633-20225:1:exon
subclass of: SO_0000010

position:18633:1
position: 18633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20225:1
position: 20225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18633-20225:1:exon

LKI_RS00280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS00280
old locus tag: LKI_10611
EC number: 2.1.1.72
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013102129.1
GO function: GO:0015666 - restriction endodeoxyribonuclease activity [Evidence IEA]; GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO process: GO:0006306 - DNA methylation [Evidence IEA]; GO:0009307 - DNA restriction-modification system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type I restriction-modification system subunit M
translation: MALTADKQALIWKTLNETRGKIEPSEYKNYIFGLMFYKFLSEKAQTWLDQQLRGETWASVWEQNPEKAAAFMQTKLGYVIQPGELFSDWQAAINVDQFNITNVADALVHFNQGIQQGAKATFEGIFDDMDLTSSRLGSNTQTRTKTLMDWISLIDQIELDEDADVLGDLYEYLIGMFAANSGAKAGEFYTPHQVSDIMARILTAGREDMPTYSLYDPAMGSGSLLLTTASYMQNDGVRGAIKYYGQEVITTTYNLGRINLMMHGVEYNDIHIHNADTLSSDWPDGVQSGVDSPRMFDAVMANPPYSLKWDNDNREDDPRFKSGIAPKSKADFAFLQHGLYHLKQDGRMAIVLPHGVLFRGAAEGRIRQALLENRNISAVIGLPEKIFTNTGIPTIIMILEKNRTTDDVLFIDASKGFEKQKNNNKLRQEDVDLIVETFLKREDVAKYAHVASFEEIKENDFNLNIPRYVDTFEEEEAVDLVAVSQDLVDVNRDIAQSESDLLAMISDLAVTEDSQAIIASAKQLFGGKHE
SIO_010081: LKI_RS00280
subclass of: SO_0000673
so part of: LKI_RS00280
location: 18633..20225
location: region:18633-20225:1
so has part: feature:18633-20225:1:exon

WP_013102129.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18633-20225:1:exon

LKI_RS00285
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS00285
old locus tag: LKI_10616
so part of: sequence
location: 20218..21387
location: region:20218-21387:1
so has part: feature:20218-21387:1:exon
subclass of: SO_0000010

position:20218:1
position: 20218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21387:1
position: 21387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20218-21387:1:exon

LKI_RS00285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS00285
old locus tag: LKI_10616
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002328117.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: restriction endonuclease subunit S
translation: MSNKVPQIRFNGYSDTWEERKLGDLLKEFSIKSKIEDEHKVLSSTNSGMEFREGRVSGTSNLGYKIIKNGDLVLSPQNLWLGNININNIGKGLVSPSYKTFEFINIDSSFINPQLRTQKMLEEYKNSSTQGASVVRRNLEIDSFYQIKIFVPTISEQEKIGSFFKQLDNTIDLHQRKLDLLKEQKKGFLQKMFPKNGEKVPELRFAGFADDWEERKLGDLLKEFSIKSKIEDEHKVLSSTNSGMEFREGRVSGTSNLGYKIIKNGDLVLSPQNLWLGNININNIGKGLVSPSYKTFEFINIDSSFINPQLRTQKMLEEYKNSSTQGASVVRRNLEIDSFYQIKIFVPTISEQEKIGSFFKQLDNTIDLHQRKLDLLKEQKKGFLQKMFV
SIO_010081: LKI_RS00285
subclass of: SO_0000673
so part of: LKI_RS00285
location: 20218..21387
location: region:20218-21387:1
so has part: feature:20218-21387:1:exon

WP_013102130.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20218-21387:1:exon

LKI_RS00290
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
gene: arsC
locus tag: LKI_RS00290
old locus tag: LKI_10621
so part of: sequence
location: 21494..21910
location: region:21494-21910:1
so has part: feature:21494-21910:1:exon
subclass of: SO_0000010

position:21494:1
position: 21494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21910:1
position: 21910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21494-21910:1:exon

LKI_RS00290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
gene: arsC
locus tag: LKI_RS00290
old locus tag: LKI_10621
EC number: 1.20.4.4
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010276791.1
GO function: GO:0030612 - arsenate reductase (thioredoxin) activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: arsenate reductase (thioredoxin)
translation: MKKIYFLCTGNSCRSQMAEGYAKKILPANEFQIESAGIETHGLNLNAVKVMAEDGVDISSHYSKLIDLNYLNTSDLVITLCGDAKDKCPMLPPQTKSLHWPLSDPAQATGTLEEQLQEFRKVRDEIKKLVTSLNNYVH
SIO_010081: LKI_RS00290
subclass of: SO_0000673
so part of: LKI_RS00290
location: 21494..21910
location: region:21494-21910:1
so has part: feature:21494-21910:1:exon

WP_010276791.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21494-21910:1:exon