Leuconostoc kimchii IMSNU 11154 plasmid LkipL4704, complete sequence.
type: Entry
definition: Leuconostoc kimchii IMSNU 11154 plasmid LkipL4704, complete sequence.
sequence version: NC_014132.1
sequence date: 2023-04-11
sequence: sequence
division: CON
label: NC_014132.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02603394
keyword: RefSeq
source: Leuconostoc kimchii IMSNU 11154
organism: Leuconostoc kimchii IMSNU 11154
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Leuconostoc.
reference: 1
references: 20494991
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP001754.1.\nStrain IMSNU11154 is available from Jongsik Chun (jchun@snu.ac.kr)\nat Institute of Microbiology, Seoul National University.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/11/2023 01:01:14\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,144\nCDSs (total) :: 2,061\nGenes (coding) :: 2,042\nCDSs (with protein) :: 2,042\nGenes (RNA) :: 83\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 68\nncRNAs :: 3\nPseudo Genes (total) :: 19\nCDSs (without protein) :: 19\nPseudo Genes (ambiguous residues) :: 0 of 19\nPseudo Genes (frameshifted) :: 10 of 19\nPseudo Genes (incomplete) :: 7 of 19\nPseudo Genes (internal stop) :: 4 of 19\nPseudo Genes (multiple problems) :: 2 of 19\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 23275
topology: circular
so has quality: SO_0000988
location: 1..23275
location: region:1-23275:1
RO_0002162: 762051

NC_014132
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02603394
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence analysis of Leuconostoc kimchii IMSNU 11154
author: Oh, H.M.
author: Cho, Y.J.
author: Kim, B.K.
author: Roe, J.H.
author: Kang, S.O.
author: Nahm, B.H.
author: Jeong, G.
author: Han, H.U.
author: Chun, J.
journal: J Bacteriol
volume: 192
issue: 14
pages: 3844-3845
year: 2010
pubmed: 20494991

20494991
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Oh, H.-M.
author: Chun, J.
journal: Submitted (21-SEP-2009) Department of Biological Sciences, Institute of Microbiology, Seoul National University, Seoul 151-742, Korea

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23275:1
position: 23275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-23275:1:source
so part of: sequence
organism: Leuconostoc kimchii IMSNU 11154
mol type: genomic DNA
strain: IMSNU 11154
type material: type strain of Leuconostoc kimchii
plasmid: LkipL4704

762051
type: Taxonomy
SIO_000068: taxonomy

LKI_RS00100
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
gene: mobV
locus tag: LKI_RS00100
old locus tag: LKI_10416
so part of: sequence
location: 330..1565
location: region:330-1565:1
so has part: feature:330-1565:1:exon
subclass of: SO_0000010

position:330:1
position: 330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1565:1
position: 1565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:330-1565:1:exon

LKI_RS00100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
gene: mobV
locus tag: LKI_RS00100
old locus tag: LKI_10416
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004906025.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobV family relaxase
translation: MAHLKKNTRGSVPGLAVHFERKTDHHTNKEIDVSKTYLNQELMADGSDMLSRFNERLNDVYCMKRDDVKALATWIVTLPEELTEASYEQQSAFFEATSNFLNDRYGQENTVAAVVHYDETTPHLHYAFVPVVFDDKKSRYKVSAKEVLTRHDLQTFHDDLDQHLKKVLPFYEQGILNHKTLPFENVAEIKKYNDQFNALKNELADVEDNIRAKQAVLKITDQALTEVDLAEKQIDDFKQALSKNLFGKTVLKPDDLDRFKNVLATMKKATLQSQHETEELKQTLGQVKAQLADVQADYQNLKETHQALQKRQREQQQLDYAMRDILKNDYAVDKLSHTDVEARYVLYKLDHEERTKNKKVAQSWLKTLTTARADPDTKIAPTRLDRGIEQVKALINRIIELTRDLFKGPSL
SIO_010081: LKI_RS00100
subclass of: SO_0000673
so part of: LKI_RS00100
location: 330..1565
location: region:330-1565:1
so has part: feature:330-1565:1:exon

WP_013102094.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:330-1565:1:exon

LKI_RS00105
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS00105
old locus tag: LKI_10421
so part of: sequence
location: 2061..3215
location: region:2061-3215:1
so has part: feature:2061-3215:1:exon
subclass of: SO_0000010

position:2061:1
position: 2061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3215:1
position: 3215
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2061-3215:1:exon

LKI_RS00105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS00105
old locus tag: LKI_10421
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014335299.1
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RepB family plasmid replication initiator protein
translation: MSIITESKTRQVQTLNELSKRKVVEHNSLITSIAKMDKTPLKMFELAVSLIDTENPPKDQTVYLSKQELFAFFNVDDSNKHSRFKEAIEKMQKQAFFKIKKAKEKGYEFESIVPIPYVKWADYHDEVTIRFSPEIMPYLINLKTNFTQHALSEISELNSKYAIILYRWLSMNYNQYEHYSVKGGRRKEQVESYRNPIITIRELRDTTDTVSEYKKFTDFERRVLKDPIKEITNHTSFNVTYEKVKKGRSIESIVFHITKNQVADDISYKLDDPAYIDGKIRQEESEKDLVYEAMKSPYTKLLMEHFLLTYIDLTDTTILSGLQKNVYPLYDELKELRGLKGVKEHLAYIRDKQDDYSKKNIAKYLKKSIEQYLPIVKRQDIDHE
SIO_010081: LKI_RS00105
subclass of: SO_0000673
so part of: LKI_RS00105
location: 2061..3215
location: region:2061-3215:1
so has part: feature:2061-3215:1:exon

WP_013102095.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2061-3215:1:exon

LKI_RS00110
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS00110
old locus tag: LKI_10426
so part of: sequence
location: 3208..3729
location: region:3208-3729:1
so has part: feature:3208-3729:1:exon
subclass of: SO_0000010

position:3208:1
position: 3208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3729:1
position: 3729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3208-3729:1:exon

LKI_RS00110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS00110
old locus tag: LKI_10426
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015081747.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MSENLKTIRELADELGVSKQRIQQIIAKLSPSKTPNKDGNRYVLNARDVKNIKESMGFENDQSPTSESTNRLVDYDVYLDVINSIKEKDEQIKSLLDVQKQTQNLLDQQQRLALQDKKLLEEYKAEIKDLKSLAMPIREDEKDVSPQSETEPAEAQAKPKKWWQFKKRGQKND
SIO_010081: LKI_RS00110
subclass of: SO_0000673
so part of: LKI_RS00110
location: 3208..3729
location: region:3208-3729:1
so has part: feature:3208-3729:1:exon

WP_013102096.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3208-3729:1:exon

LKI_RS00115
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS00115
old locus tag: LKI_10431
so part of: sequence
location: 3722..5659
location: region:3722-5659:1
so has part: feature:3722-5659:1:exon
subclass of: SO_0000010

position:3722:1
position: 3722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5659:1
position: 5659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3722-5659:1:exon

LKI_RS00115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS00115
old locus tag: LKI_10431
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010017109.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO process: GO:0006306 - DNA methylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA methyltransferase
translation: MIDSKVMETTKSILKDFGNTYFSDKGTLKRNKVIEDLDAYTPMLMKALLANQLIHDTYTESIVIDDKSVELFKLNQFIEMFTYKEYWQDSYTKFENKIGLTAGGKFIDETADVVLDFPFKDSVLKAGMTKEDQKDTDEPFLHETIAKAEIDQLLEPKIFVNATKYDQENLAGASTDSFNDDNLIIKGNNLIALHSLKNRYAGTVKSIFIDPPYFFETTKPADTYTYNSNFKLSGWLTFVQNRIKIAHELLAENGTLFLTMSDEGAHYIKILMDSIFNSQNFIADVTWESRKSISSDALISINTNHVLVYAKNLSQIRKNDFRLALDIDTFKNDDEDGRGKYRLEPFDAPNFRANLQYEIITPSGRHVLPANGRHWRTEKSTYEKLLSENKIYFGKDGNAKPSLKAYYSEVAEAGKGKTASTIWRDNNSIIWDDAGTNTKATQHQVELFSENVFTNPKPEQLIKRILEISTNENDLVLDFFMGSATTQAVAMKMNRRFIGVEQMDYIKTVSVERLKKVIDGEQGGISKDVNWQGGGSFVYAELMEKNQGYLKDVQQAETTKQLEDVVHRMIEGGADFDFRVDVEKVLQDPEYQAMALADKKQLIVKVIDKNQLYYAYSDMDDRDVQELMSDSDIAFNKSFYGERDL
SIO_010081: LKI_RS00115
subclass of: SO_0000673
so part of: LKI_RS00115
location: 3722..5659
location: region:3722-5659:1
so has part: feature:3722-5659:1:exon

WP_013102097.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3722-5659:1:exon

LKI_RS00120
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS00120
old locus tag: LKI_10436
so part of: sequence
location: 5659..8271
location: region:5659-8271:1
so has part: feature:5659-8271:1:exon
subclass of: SO_0000010

position:8271:1
position: 8271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5659-8271:1:exon

LKI_RS00120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS00120
old locus tag: LKI_10436
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004915889.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DEAD/DEAH box helicase family protein
translation: MAKKKARELVLPIIHEINDYTNDFLKNDEPRHAFVYPDYIKHNLKHQLRDYQKQSLYNLNYTQKDANVASRFNQLLFHMATGSGKTDVMAADMLYFYHEFGYQNFLFVVNTNAVIAKTRENMLNVQSPKYLFSQPLNIDGTPIELREVTRFPTNSEPGVIYLRLTTIQTLANELNTPRENGLTYGDLEKQKLIILADEAHHFSAGTKSKADQKNKAWEYVLDRIRQANKANRQLEFTATIDLNNESIYEKYRDKVIFQYDLKEFQNAGYSKKIARLQANADDNEKMLNAVLLSQYRKRMAIQAGIRDFKPVILFKSNKIEVSKAARDQFLTLVDQLTTEDLAQFIAKQLNTTQSSTLRQAYTYYQTVDMGGLVRELQRDFQPLNTINVNDTSSNGILGDLNDLRNLNTLEEPSNPFRAIFAVAKLSEGWDVLNLYDIVRIGEQPITSTQTNSEAQLIGRGARYNPFVYEEATSFTRRFDHSTPELQILESLHYHTINDKKYIDNLTKSFEAMQLQVEDDKDFDILTTTVKASFKRSDVYQYGKLYYNDVEDVPESEYNGLAKYGVPVAELPTVNIETATLEATAFDTQNVAGMNETRLVKIDDALVKKAMARNPFFRFNTMKKYMPTLNSISEFMHEAQWLGQIKEIQATVSTGSDAVLSRETQLLVVEKYLAYIQRMLIMNYKRQRGTNKFIGLPIKDAVQDYQKRVPVNYSDAGVHELIQTYDYKKAPWFVYNEAIVDKLERSLIELIQGYVEELQKKYKDVYLIRSDERNTKLKLHEFAGDVSHYAGFLPDFVLYLANESYIYQVYIEPKGTQLLEQDQWKEDLLTSISPERVDVIGENDKVKLYGVKFYVAGDARQVRNKIQNIAF
SIO_010081: LKI_RS00120
subclass of: SO_0000673
so part of: LKI_RS00120
location: 5659..8271
location: region:5659-8271:1
so has part: feature:5659-8271:1:exon

WP_013102098.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5659-8271:1:exon

LKI_RS00125
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS00125
old locus tag: LKI_10441
so part of: sequence
location: 8412..9056
location: region:8412-9056:1
so has part: feature:8412-9056:1:exon
subclass of: SO_0000010

position:8412:1
position: 8412
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9056:1
position: 9056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8412-9056:1:exon

LKI_RS00125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS00125
old locus tag: LKI_10441
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014335296.1
GO function: GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: metalloregulator ArsR/SmtB family transcription factor
translation: MFEQAVNYKNGLYEELSKIGKGLSSDRRLEILDLLTQAPKSVETIANGVGISVANASRHLQILKDSHLVKTKRKGNHIIYSLSSPKISDLVHLLTDIGNSELSDMKTIQDKSDAQDNVKTISLKQAQEEYKNCFVLDVRPSDEYAAGHIQSAINVPLETLKESMPKLPKDQKIIVYCRGRLCANSNIATQILNRNGFDAVSLNSSHYDWNKITE
SIO_010081: LKI_RS00125
subclass of: SO_0000673
so part of: LKI_RS00125
location: 8412..9056
location: region:8412-9056:1
so has part: feature:8412-9056:1:exon

WP_006844826.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8412-9056:1:exon

LKI_RS10640
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS10640
so part of: sequence
location: 9182..9463
location: region:9182-9463:1
so has part: feature:9182-9463:1:exon
subclass of: SO_0000010

position:9182:1
position: 9182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9463:1
position: 9463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9182-9463:1:exon

LKI_RS10640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS10640
inference: COORDINATES: protein motif:HMM:NF012314.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: thioredoxin family protein
translation: MSTIDKTLTLINFENNWCAQCYTQRPIINKISHDFNSYLNVRVVNSDAHPELAKKYNVYSAPSTILLRDGRIVEKITRFIDQSQLTTLIKYYL
SIO_010081: LKI_RS10640
subclass of: SO_0000673
so part of: LKI_RS10640
location: 9182..9463
location: region:9182-9463:1
so has part: feature:9182-9463:1:exon

WP_081482751.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9182-9463:1:exon

LKI_RS00130
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
gene: trxA
locus tag: LKI_RS00130
old locus tag: LKI_10446
so part of: sequence
location: 9477..9791
location: region:9477-9791:1
so has part: feature:9477-9791:1:exon
subclass of: SO_0000010

position:9477:1
position: 9477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9791:1
position: 9791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9477-9791:1:exon

LKI_RS00130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
gene: trxA
locus tag: LKI_RS00130
old locus tag: LKI_10446
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006844824.1
GO component: GO:0005737 - cytoplasm [Evidence IEA]
GO function: GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: thioredoxin
translation: MVKNLTDKDFVKETSTGVTLTDFWATWCPPCRMQGPIIEQLDKEIGDKVKITKMDVDANQETPIAFGIMSIPTLIIKKDGQVVDKLVGLQSKDQLKTVLAQYTN
SIO_010081: LKI_RS00130
subclass of: SO_0000673
so part of: LKI_RS00130
location: 9477..9791
location: region:9477-9791:1
so has part: feature:9477-9791:1:exon

WP_013102099.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9477-9791:1:exon

LKI_RS00135
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS00135
old locus tag: LKI_10451
so part of: sequence
location: 9812..10135
location: region:9812-10135:1
so has part: feature:9812-10135:1:exon
subclass of: SO_0000010

position:9812:1
position: 9812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10135:1
position: 10135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9812-10135:1:exon

LKI_RS00135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS00135
old locus tag: LKI_10451
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006844823.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: thioredoxin family protein
translation: MEQLSVMNKKEFDKKLKNGKYILVFIASWCPDCSFIKPHLPEIEQEFKDYTFISVDRDENTELAQELNIFGIPSFVIFRDGQEIGRLVNKDRKTKEEVENFITNTIN
SIO_010081: LKI_RS00135
subclass of: SO_0000673
so part of: LKI_RS00135
location: 9812..10135
location: region:9812-10135:1
so has part: feature:9812-10135:1:exon

WP_006844823.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9812-10135:1:exon

LKI_RS10645
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS10645
pseudo: true
so part of: sequence
location: 10135..>10263
location: region:10135-10263:1
so has part: feature:10135-10263:1:exon
subclass of: SO_0000010

position:10263:1
position: 10263
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10135-10263:1:exon

LKI_RS10645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS10645
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003670574.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: aspartate racemase
SIO_010081: LKI_RS10645
subclass of: SO_0000673
so part of: LKI_RS10645
location: 10135..>10263
location: region:10135-10263:1
so has part: feature:10135-10263:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10135-10263:1:exon

LKI_RS00140
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
gene: trxB
locus tag: LKI_RS00140
old locus tag: LKI_10456
so part of: sequence
location: 10354..11298
location: region:10354-11298:1
so has part: feature:10354-11298:1:exon
subclass of: SO_0000010

position:10354:1
position: 10354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11298:1
position: 11298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10354-11298:1:exon

LKI_RS00140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
gene: trxB
locus tag: LKI_RS00140
old locus tag: LKI_10456
EC number: 1.8.1.9
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006844822.1
GO function: GO:0004791 - thioredoxin-disulfide reductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: thioredoxin-disulfide reductase
translation: MRKYHVVVIGAGPGGMTAALYAARANLNVAMLDRGIYGGQMNNTDDIENYPGFTTIKGPELGEKMYQGTVKAGVNFVYGDVQNVTVDDQQMKHIQTDSDELVASAVIIATGSNNRKLGVPGEEKFSGKGVSYCAVCDGSFFKGKNVTVVGGGDSAISEGLYLANVTDGVNVIHRRDRLRAQKVLQNRAFDNDKIDFTWNTSVTEILGDENHVTGVKIHNNQVGDDTTLDTDGVFVYVGNFPNSQIFNNLNITDQAGWIITNDQMETTIPGIYAIGDVRQKQLRQITTAVGDGGIAGQNAFEYFEAIKHRQTVKD
SIO_010081: LKI_RS00140
subclass of: SO_0000673
so part of: LKI_RS00140
location: 10354..11298
location: region:10354-11298:1
so has part: feature:10354-11298:1:exon

WP_041773452.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10354-11298:1:exon

LKI_RS00145
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS00145
old locus tag: LKI_10461
so part of: sequence
location: 11317..11964
location: region:11317-11964:1
so has part: feature:11317-11964:1:exon
subclass of: SO_0000010

position:11317:1
position: 11317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11964:1
position: 11964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11317-11964:1:exon

LKI_RS00145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS00145
old locus tag: LKI_10461
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006844821.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DsbA family oxidoreductase
translation: MEIKYWSDIACPFCYIGSNRMKRAMKEIGIYDTTELEFKSFELNPATPKETDEGYINHFTQGNKAMEPQAKKQMAYIEQMAHNDGLPMDLDSVVPTNTMDAHRIIKFAEAKNDPDLTERVIRRFYQVYFSDGQSISDHDVLLNAAMEAGLAKDEVEKVLNSNQYHQAVVNDEAEAQQSGIHAAPFFVINNKYAISGAQPYEVFVKALKRVQEEEN
SIO_010081: LKI_RS00145
subclass of: SO_0000673
so part of: LKI_RS00145
location: 11317..11964
location: region:11317-11964:1
so has part: feature:11317-11964:1:exon

WP_006844821.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11317-11964:1:exon

LKI_RS11155
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS11155
old locus tag: LKI_10466
so part of: sequence
location: 11977..12105
location: region:11977-12105:1
so has part: feature:11977-12105:1:exon
subclass of: SO_0000010

position:11977:1
position: 11977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12105:1
position: 12105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11977-12105:1:exon

LKI_RS11155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS11155
old locus tag: LKI_10466
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004909440.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAEDKPQFNTIFGDNNDDAVCGPDGCTIAEHQKQTEDKKKTK
SIO_010081: LKI_RS11155
subclass of: SO_0000673
so part of: LKI_RS11155
location: 11977..12105
location: region:11977-12105:1
so has part: feature:11977-12105:1:exon

WP_013102101.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11977-12105:1:exon

LKI_RS00150
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS00150
old locus tag: LKI_10471
so part of: sequence
location: 12123..13454
location: region:12123-13454:1
so has part: feature:12123-13454:1:exon
subclass of: SO_0000010

position:12123:1
position: 12123
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13454:1
position: 13454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12123-13454:1:exon

LKI_RS00150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS00150
old locus tag: LKI_10471
EC number: 1.-.-.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015474696.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NAD(P)/FAD-dependent oxidoreductase
translation: MKFDYVVIGSGPSVYRFLLGMQNSGKKIAVVEKNRFGGICPNEGCEPKIFLEGAARATLTSMRLQGKGITQPAKLDWKELIQQKNKAMASFLNNMQSMYEGLGATTIKGEASFVDQHTIEVNNKKITADNFVIATGKKPHPLNIPGHEYLLTSTNLFELEDTPKNVAIIGSGYVGMEFATLLSAAGVKVTVIVRSGQPLEGFYSQHVHQLVDEMKNSLGINFIFNTNVTAVTEAQTGYEVQSANGNLGTFDKVINASGRVPEINALKLDNAGVEYSNRGIKVDKYLTTSANNIYAMGDIVDKTVPALTSTAQFEADYLSALLTNKTTEPLRYPVIGTVTFTFPQLAQAGISIDKAKEDSNYSIKDIDITQGDFFYAGTDDHARLSLVFDKQNHLVGAAEISQTAVDDINALIPVMAIDVDPKVWKEKMIMAFPGLAYKIRTLI
SIO_010081: LKI_RS00150
subclass of: SO_0000673
so part of: LKI_RS00150
location: 12123..13454
location: region:12123-13454:1
so has part: feature:12123-13454:1:exon

WP_013102102.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12123-13454:1:exon

LKI_RS00155
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS00155
old locus tag: LKI_10476
so part of: sequence
location: 13677..14267
location: region:13677-14267:1
so has part: feature:13677-14267:1:exon
subclass of: SO_0000010

position:13677:1
position: 13677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14267:1
position: 14267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13677-14267:1:exon

LKI_RS00155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS00155
old locus tag: LKI_10476
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017369153.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MVQQIVLPIKDSNVLKMVQDTLLDSFRAGRRNYTVFQVGKATLLRVSDVMTLKKSDVYNPDGSVKNTAFIHDKKTGKANTLYLKPVQQDLLQYHDWLVQENINSEWLFPSTAHHDHHITEKQFYKVMARVGDLLSINYLGTHTMRKTGAYRVYTQSNYNIGLVMHLLNHSSEAMTLTYLGLDQASRETMLDQIDFG
SIO_010081: LKI_RS00155
subclass of: SO_0000673
so part of: LKI_RS00155
location: 13677..14267
location: region:13677-14267:1
so has part: feature:13677-14267:1:exon

WP_013102103.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13677-14267:1:exon

LKI_RS00160
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS00160
old locus tag: LKI_10481
so part of: sequence
location: complement(14582..15814)
location: region:14582-15814:-1
so has part: feature:14582-15814:-1:exon
subclass of: SO_0000010

position:14582:-1
position: 14582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15814:-1
position: 15814
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14582-15814:-1:exon

LKI_RS00160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS00160
old locus tag: LKI_10481
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013102104.1
GO function: GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
GO process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: polysaccharide deacetylase family protein
translation: MIKTKKTTLVIGLILGAGLGLYGNIDDDVMAAKTDSQTIKAVKQAKSLSQQYQYKEAKSLLSGHKGTTVDHLKKSINKQQSKLVTWDDPTKISHLFYHSLIVDPGKAFSSKQAQGYKDYMVTIDEFMPMLNQLYDNGYVLINFKDIISIDKQGKVTFKPVKLPEGKKPLIISQDDVNYYEYMKDSGFADKLVVNKQGDVKNQYTNNGQKKIGDYDMVPIIDTFIKKHPDFSYGGSKGVIAETGYNGALGYRSSKSQYGDTKKTHREAKKATKVANAMKKEGWQFASHSWGHINMTTASVDDIKKDTALWQKEVQPIVGKTPVLIFPFGADIGSFTNYTNDNAKYTYLKSSGFSIFDNVDASQTSWGQLTNDYYRNARINVDGIRLHETMTGENTVLNDFFNTKDFYHRDK
SIO_010081: LKI_RS00160
subclass of: SO_0000673
so part of: LKI_RS00160
location: complement(14582..15814)
location: region:14582-15814:-1
so has part: feature:14582-15814:-1:exon

WP_013102104.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14582-15814:-1:exon

LKI_RS00165
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS00165
old locus tag: LKI_10486
so part of: sequence
location: 16426..17088
location: region:16426-17088:1
so has part: feature:16426-17088:1:exon
subclass of: SO_0000010

position:16426:1
position: 16426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17088:1
position: 17088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16426-17088:1:exon

LKI_RS00165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS00165
old locus tag: LKI_10486
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016117851.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CadD family cadmium resistance transporter
translation: MNLILTILSALGSFIVTNIDDIFVLMLLFSQASSQAKASNGRTVKGNRIYPKDIVIGQYLGFALLVLISLLATFGVTLIPDQWVGLLGLIPIYLGVKLFIKGEDEDEGAILSSLNKFNKFYLSVAFITFANGGDNIGIYVPFFSTLNNNQLVITVVTFFIMVAVWCLIGYRLARFRYVSETLEKYGRWVIPIVFIGLGFYIMAENNIFSNLWSDFVNLNS
SIO_010081: LKI_RS00165
subclass of: SO_0000673
so part of: LKI_RS00165
location: 16426..17088
location: region:16426-17088:1
so has part: feature:16426-17088:1:exon

WP_013102105.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16426-17088:1:exon

LKI_RS00170
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS00170
old locus tag: LKI_10491
so part of: sequence
location: complement(17285..17968)
location: region:17285-17968:-1
so has part: feature:17285-17968:-1:exon
subclass of: SO_0000010

position:17285:-1
position: 17285
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17968:-1
position: 17968
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17285-17968:-1:exon

LKI_RS00170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS00170
old locus tag: LKI_10491
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003660036.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6 family transposase
translation: MNHFKGRHFQKDIILVAVGYYFRFSLSYRDIVELLRDRGITVHHTTVMRWVHHYGPIFKALWRRHQTAHAKSWRIDETYIRVKGRWAYLYRAIDSNGLTMDFELRKHRDYTASYHFLKRLLTTNGRPDRLVTDQYRATLKAVKHLIKQDYLSKSAHQCSKYRNNLIEQDHRFIKRHRVRSASFQSIRTASATLSGVEIVHAIRKRTRRELSLIGFSVVDELEALLAA
SIO_010081: LKI_RS00170
subclass of: SO_0000673
so part of: LKI_RS00170
location: complement(17285..17968)
location: region:17285-17968:-1
so has part: feature:17285-17968:-1:exon

WP_002816607.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17285-17968:-1:exon

LKI_RS00175
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS00175
old locus tag: LKI_10496
so part of: sequence
location: 18532..19509
location: region:18532-19509:1
so has part: feature:18532-19509:1:exon
subclass of: SO_0000010

position:18532:1
position: 18532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19509:1
position: 19509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18532-19509:1:exon

LKI_RS00175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS00175
old locus tag: LKI_10496
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014335305.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LacI family DNA-binding transcriptional regulator
translation: MKAKIDDVAKLAGVSKTTVSRVMNKRGYLSEKTIKKVHDAMDELNYQPNVVARQLFKQETKLVGLIFPTVNNPFFGQLVATIEKKLFSKGFKVLLGDSMNDPEKERLYLRELMAHQVDGLIVGAHNQGIKEYQNANLPIIAIDRIMNNDIPVVSSDNYQGGKMATELLIKNGAKVIIHTNGPKTLQTPAQKRYQAYEDTMIQYGLKPITYTVDFNVSYEQKAKFLKNIFKEHPDVDGMFISNDVDAAQAIDIAGDLGYKVPEDLKIVGYDGAETTRILLPNLTTIIQPIDRMAETAVNMLVARISNNDAGENKVLPVKVWRGKTV
SIO_010081: LKI_RS00175
subclass of: SO_0000673
so part of: LKI_RS00175
location: 18532..19509
location: region:18532-19509:1
so has part: feature:18532-19509:1:exon

WP_013102106.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18532-19509:1:exon

LKI_RS00180
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS00180
old locus tag: LKI_10501
so part of: sequence
location: 19626..20858
location: region:19626-20858:1
so has part: feature:19626-20858:1:exon
subclass of: SO_0000010

position:19626:1
position: 19626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20858:1
position: 20858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19626-20858:1:exon

LKI_RS00180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS00180
old locus tag: LKI_10501
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013102107.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MFS transporter
translation: MRKNTYVRLSAFFFFFFVSWSACYSLFAIWLGQEIHLNGEATGLIFGINAAFTLLMQPLYGYVSDKLGTRKDLLVYLSGILIFTGPFFIYVYGPLLKFNVVIGAIVGGIFLGVGYLASVGAVESYIEKISRKYDFEYGRARMWGSLGWAVTTFFAGQLFIINPSYNFWIASIAAIVMFLIILTTKVEVTDVEAKNADSVTVKDVFNLFKLKDFWFFVIFVLGVTCVYGVYDQQFPRYFAEQFATVKLGDQMFGYLNSFQVFLEAGMMFLAPKIVNKIGARNSLLLAGFLMAFRITGSGLVDGPILISMMKLIHSFELPILLVSVFKYLDANFEARLSSILYLVGFQFFGQIGTIGLSSLVGKMYDSLGFKITYLYLGIFVFVFAVIAVFTLKKGNSQITKTNSIDAHVQS
SIO_010081: LKI_RS00180
subclass of: SO_0000673
so part of: LKI_RS00180
location: 19626..20858
location: region:19626-20858:1
so has part: feature:19626-20858:1:exon

WP_013102107.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19626-20858:1:exon

LKI_RS00185
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS00185
old locus tag: LKI_10506
so part of: sequence
location: 20869..22296
location: region:20869-22296:1
so has part: feature:20869-22296:1:exon
subclass of: SO_0000010

position:20869:1
position: 20869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22296:1
position: 22296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20869-22296:1:exon

LKI_RS00185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS00185
old locus tag: LKI_10506
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013102108.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycoside hydrolase family 32 protein
translation: MQEVESKKIKLNNTRYRLGYHIMAPSGWINDPNGFCYFQGYYHIFYQHYPNDSKWGPMHWGHARSKDLVHWESLPIALTPGDKEDEDGCFSGSAVVYNGKMYLIYTGHHYYGDGDSDHFWQNQNLAISEDGIHFEKYENNPIISQAPEDNTQHFRDPKVWYNNGKWYLILGSQNKQEMGRVLLYKSDNLIDWILVGPVAESKDTKKEGYMWECPDFFRLGDNDFLLMSPQGIEADKGRFKNLHETGYLVGNYRYNDNNFERGDFNELDNGHDFYATQTTLTPDGRRIVIGWMDMWESPMPESADGWAGALTIPRELIYQDGILKMKPIKELEKLRTRELLNKNYLVKGNQNIVSNSRNYEAKLNLNVGDNDEAGFELRNEENNLILRVVYDKRNNRIVLNRSGDDPEREAILSKSEQLKFHLYVDTSSIEIFVNNGERTFTERFYSDGAKLNVISENDMKVQASVYQLDKNAVKF
SIO_010081: LKI_RS00185
subclass of: SO_0000673
so part of: LKI_RS00185
location: 20869..22296
location: region:20869-22296:1
so has part: feature:20869-22296:1:exon

WP_013102108.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20869-22296:1:exon

LKI_RS00190
type: Gene
subclass of: SO_0000704
RO_0002162: 762051
locus tag: LKI_RS00190
old locus tag: LKI_10511
so part of: sequence
location: 22532..22963
location: region:22532-22963:1
so has part: feature:22532-22963:1:exon
subclass of: SO_0000010

position:22532:1
position: 22532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22963:1
position: 22963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22532-22963:1:exon

LKI_RS00190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 762051
locus tag: LKI_RS00190
old locus tag: LKI_10511
EC number: 2.3.1.-
inference: COORDINATES: protein motif:HMM:NF025054.2
GO function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GNAT family N-acetyltransferase
translation: MITKLNSFSDRDLEQLAQIWLNGNLQAHSFIPAQYWKNQFVNIKKMLPEANIFLYRNNEIIIGFLGKLDGYIAGLFVDMNYRKQGVGSRLINYLKQINDKLTLSVYVDNINAVNFYENKDFIIDSVGMDTETDSKEYRMTWEK
SIO_010081: LKI_RS00190
subclass of: SO_0000673
so part of: LKI_RS00190
location: 22532..22963
location: region:22532-22963:1
so has part: feature:22532-22963:1:exon

WP_013102109.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22532-22963:1:exon