Leuconostoc kimchii IMSNU 11154 plasmid LkipL4701, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Leuconostoc.
Complete genome sequence analysis of Leuconostoc kimchii IMSNU 11154
Submitted (21-SEP-2009) Department of Biological Sciences, Institute of Microbiology, Seoul National University, Seoul 151-742, Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP001753.1.\nStrain IMSNU11154 is available from Jongsik Chun (jchun@snu.ac.kr)\nat Institute of Microbiology, Seoul National University.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/11/2023 01:01:14\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,144\nCDSs (total) :: 2,061\nGenes (coding) :: 2,042\nCDSs (with protein) :: 2,042\nGenes (RNA) :: 83\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 68\nncRNAs :: 3\nPseudo Genes (total) :: 19\nCDSs (without protein) :: 19\nPseudo Genes (ambiguous residues) :: 0 of 19\nPseudo Genes (frameshifted) :: 10 of 19\nPseudo Genes (incomplete) :: 7 of 19\nPseudo Genes (internal stop) :: 4 of 19\nPseudo Genes (multiple problems) :: 2 of 19\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_012304813.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012304814.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_012304815.1
COORDINATES: similar to AA sequence:RefSeq:WP_013975378.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015474649.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF033516.0
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010277795.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004903681.1
COORDINATES: similar to AA sequence:RefSeq:WP_004906025.1
COORDINATES: similar to AA sequence:RefSeq:WP_014335299.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
RepB family plasmid replication initiator protein
COORDINATES: similar to AA sequence:RefSeq:WP_016628117.1
COORDINATES: similar to AA sequence:RefSeq:WP_003725277.1
COORDINATES: similar to AA sequence:RefSeq:WP_003725278.1
COORDINATES: similar to AA sequence:RefSeq:WP_002410913.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003725281.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010054034.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012304810.1
COORDINATES: similar to AA sequence:RefSeq:WP_012304811.1
GO:0004791 - thioredoxin-disulfide reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012304812.1
COORDINATES: similar to AA sequence:RefSeq:WP_004909440.1