Aromatoleum aromaticum EbN1 plasmid 1, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.
The genome sequence of an anaerobic aromatic-degrading denitrifying bacterium, strain EbN1
Submitted (16-NOV-2004) Max Planck Institut Fuer Molekulare Genetik, proScience Ihnestrasse 73, Berlin, 14195 Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCR555307.1.\n-------------- Genome Center\nCenter: Max-Planck-Institute for Molecular Genetics Center code:\nMPIMG\nsee http://www.micro-genomes.mpg.de/ebn1/ for detailed gene\nannotation annotation of the genome was performed by MPI Bremen,\nMPI Berlin and University of Freiburg.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/05/2023 01:28:20\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,580\nCDSs (total) :: 4,509\nGenes (coding) :: 4,398\nCDSs (with protein) :: 4,398\nGenes (RNA) :: 71\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 56\nncRNAs :: 3\nPseudo Genes (total) :: 111\nCDSs (without protein) :: 111\nPseudo Genes (ambiguous residues) :: 0 of 111\nPseudo Genes (frameshifted) :: 21 of 111\nPseudo Genes (incomplete) :: 101 of 111\nPseudo Genes (internal stop) :: 12 of 111\nPseudo Genes (multiple problems) :: 23 of 111\nCRISPR Arrays :: 5\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_004359146.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004303614.1
COORDINATES: similar to AA sequence:RefSeq:WP_012584370.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025642.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF023101.2
COORDINATES: similar to AA sequence:RefSeq:WP_017347495.1
COORDINATES: protein motif:HMM:NF024206.2
GO:0005515 - protein binding [Evidence IEA]
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002941276.1
COORDINATES: similar to AA sequence:RefSeq:WP_002942146.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004255176.1
COORDINATES: similar to AA sequence:RefSeq:WP_004362180.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_011229305.1
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_011254903.1
COORDINATES: similar to AA sequence:RefSeq:WP_013032100.1
COORDINATES: protein motif:HMM:NF037161.2
GO:0000166 - nucleotide binding [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]
COORDINATES: protein motif:HMM:NF010497.0
COORDINATES: protein motif:HMM:NF016724.2
COORDINATES: protein motif:HMM:NF012403.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF022792.2
COORDINATES: similar to AA sequence:RefSeq:WP_002941260.1
GO:0003824 - catalytic activity [Evidence IEA]
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002941193.1
COORDINATES: similar to AA sequence:RefSeq:WP_002941196.1
COORDINATES: similar to AA sequence:RefSeq:WP_002941197.1
COORDINATES: protein motif:HMM:TIGR03742.1
COORDINATES: similar to AA sequence:RefSeq:WP_002941210.1
COORDINATES: protein motif:HMM:TIGR03741.1
COORDINATES: similar to AA sequence:RefSeq:WP_002941218.1
COORDINATES: protein motif:HMM:NF024251.2
COORDINATES: protein motif:HMM:NF019348.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017973.2
COORDINATES: protein motif:HMM:NF016874.2
COORDINATES: protein motif:HMM:NF014069.2
COORDINATES: protein motif:HMM:TIGR03033.1
COORDINATES: protein motif:HMM:NF025005.2
COORDINATES: protein motif:HMM:NF024755.2
COORDINATES: protein motif:HMM:NF015437.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF013209.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF023168.2
COORDINATES: protein motif:HMM:NF016408.2
COORDINATES: similar to AA sequence:RefSeq:WP_011254719.1
IS1380-like element ISAzo40 family transposase
COORDINATES: protein motif:HMM:NF016227.2
COORDINATES: similar to AA sequence:RefSeq:WP_010104815.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017157756.1
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_018079154.1
COORDINATES: protein motif:HMM:NF005829.0
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:NF015648.2
COORDINATES: protein motif:HMM:NF019530.2
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF017892.2
COORDINATES: protein motif:HMM:TIGR02740.1
COORDINATES: protein motif:HMM:NF021981.2
COORDINATES: protein motif:HMM:TIGR02746.1
COORDINATES: protein motif:HMM:NF041281.1
TraA family conjugative transfer protein
COORDINATES: protein motif:HMM:TIGR02747.1
type IV conjugative transfer system lipoprotein TraV
COORDINATES: protein motif:HMM:NF015688.2
COORDINATES: protein motif:HMM:NF018311.2
type-F conjugative transfer system secretin TraK
COORDINATES: protein motif:HMM:NF017152.2
TraE/TraK family type IV conjugative transfer system protein
COORDINATES: protein motif:HMM:NF018836.2
type IV conjugative transfer system protein TraL
COORDINATES: protein motif:HMM:NF012894.2
GO:0042834 - peptidoglycan binding [Evidence IEA]; GO:0015288 - porin activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024853.2
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012652.2
GO:0009306 - protein secretion [Evidence IEA]
COORDINATES: protein motif:HMM:NF013618.2
lytic transglycosylase domain-containing protein
COORDINATES: protein motif:HMM:NF018666.2
COORDINATES: protein motif:HMM:TIGR02742.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: protein motif:HMM:NF018536.2
COORDINATES: protein motif:HMM:TIGR02743.1
type-F conjugative transfer system protein TraW
COORDINATES: protein motif:HMM:NF024498.2
COORDINATES: protein motif:HMM:NF021897.2
TraM recognition domain-containing protein
COORDINATES: protein motif:HMM:NF017736.2
D-Ala-D-Ala carboxypeptidase family metallohydrolase
COORDINATES: protein motif:HMM:NF013506.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013014.2
COORDINATES: similar to AA sequence:RefSeq:WP_011236000.1
IS21-like element ISAZo16 family helper ATPase IstB
COORDINATES: similar to AA sequence:RefSeq:WP_076612300.1
COORDINATES: similar to AA sequence:RefSeq:WP_017941447.1
COORDINATES: similar to AA sequence:RefSeq:WP_010639615.1
COORDINATES: similar to AA sequence:RefSeq:WP_018079631.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_002942047.1
COORDINATES: similar to AA sequence:RefSeq:WP_013122092.1
RNA-guided endonuclease TnpB family protein
COORDINATES: protein motif:HMM:NF033573.1
COORDINATES: protein motif:HMM:NF027602.2
COORDINATES: similar to AA sequence:RefSeq:WP_020308233.1
COORDINATES: similar to AA sequence:RefSeq:WP_018439185.1
COORDINATES: similar to AA sequence:RefSeq:WP_020203543.1
COORDINATES: similar to AA sequence:RefSeq:WP_019437789.1
COORDINATES: similar to AA sequence:RefSeq:WP_011875846.1
COORDINATES: similar to AA sequence:RefSeq:WP_002942052.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876349.1
COORDINATES: similar to AA sequence:RefSeq:WP_012823370.1
COORDINATES: similar to AA sequence:RefSeq:WP_013012852.1
COORDINATES: protein motif:HMM:NF019237.2
COORDINATES: protein motif:HMM:NF001464.0
COORDINATES: protein motif:HMM:NF018122.2
COORDINATES: similar to AA sequence:RefSeq:WP_013294668.1
COORDINATES: protein motif:HMM:NF021255.2
COORDINATES: protein motif:HMM:NF024491.2
phospholipase D-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017052357.1
COORDINATES: protein motif:HMM:TIGR00665.1
GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011254765.1
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: protein motif:HMM:TIGR03694.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
PEP-CTERM/exosortase system-associated acyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_041647856.1
IS5-like element ISAzo41 family transposase
COORDINATES: protein motif:HMM:NF023550.2
COORDINATES: similar to AA sequence:RefSeq:WP_012471703.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011254782.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004338300.1
HPF/RaiA family ribosome-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_004383054.1
COORDINATES: similar to AA sequence:RefSeq:WP_012971765.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798449.1
HpcH/HpaI aldolase/citrate lyase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018604813.1
COORDINATES: similar to AA sequence:RefSeq:WP_005663483.1
COORDINATES: similar to AA sequence:RefSeq:WP_020655672.1
phosphoribosyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019920659.1
COORDINATES: similar to AA sequence:RefSeq:WP_018057731.1
GO:0006950 - response to stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018604808.1
COORDINATES: similar to AA sequence:RefSeq:WP_020655674.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798442.1
COORDINATES: similar to AA sequence:RefSeq:WP_013028797.1
COORDINATES: similar to AA sequence:RefSeq:WP_015731191.1
COORDINATES: similar to AA sequence:RefSeq:WP_002210396.1
COORDINATES: similar to AA sequence:RefSeq:WP_018604800.1
COORDINATES: similar to AA sequence:RefSeq:WP_018604798.1
TerY-C metal binding domain-containing protein
COORDINATES: protein motif:HMM:NF025053.2
GO:0004722 - protein serine/threonine phosphatase activity [Evidence IEA]
PP2C family serine/threonine-protein phosphatase
COORDINATES: similar to AA sequence:RefSeq:WP_007043106.1
lipopolysaccharide kinase InaA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018079301.1
COORDINATES: similar to AA sequence:RefSeq:WP_018604804.1
COORDINATES: similar to AA sequence:RefSeq:WP_002730469.1
tellurite resistance TerB family protein
COORDINATES: protein motif:HMM:NF025386.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004300896.1
COORDINATES: similar to AA sequence:RefSeq:WP_015397901.1
GO:0030261 - chromosome condensation [Evidence IEA]
COORDINATES: protein motif:HMM:NF006615.0
COORDINATES: similar to AA sequence:RefSeq:WP_002941125.1
COORDINATES: similar to AA sequence:RefSeq:WP_004872816.1
COORDINATES: similar to AA sequence:RefSeq:WP_004333216.1
COORDINATES: protein motif:HMM:NF037906.2
COORDINATES: protein motif:HMM:NF015146.2
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004844 - uracil DNA N-glycosylase activity [Evidence IEA]
bifunctional diguanylate cyclase/phosphodiesterase
COORDINATES: similar to AA sequence:RefSeq:WP_009242150.1
COORDINATES: protein motif:HMM:TIGR03117.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
type IV CRISPR-associated DEAD/DEAH-box helicase Csf4
COORDINATES: protein motif:HMM:TIGR03114.1
COORDINATES: protein motif:HMM:TIGR03115.1
COORDINATES: protein motif:HMM:TIGR03116.1