Haliscomenobacter hydrossis DSM 1100 plasmid pHALHY02, complete sequence.
Bacteria; Bacteroidota; Saprospiria; Saprospirales; Haliscomenobacteraceae; Haliscomenobacter.
Complete genome sequence of Haliscomenobacter hydrossis type strain (O)
Submitted (26-APR-2011) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP002693.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4087347\nSource DNA and organism available from Hans-Peter Klenk at the\nGerman Collection of Microorganisms and Cell Cultures (DSMZ)\n(hans-peter.klenk@dsmz.de)\nContacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)\n David Bruce (microbe@cuba.jgi-psf.org)\nWhole genome sequencing and draft assembly at JGI-PGF\nFinishing done by JGI-LANL\nAnnotation by JGI-ORNL and JGI-PGF\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Haliscomenobacter hydrossis O, DSM 1100\ncollection_date :: before 1973\nlat_lon :: Missing\ndepth :: Missing\nalt_elev :: Missing\ncountry :: Netherlands\nenvironment :: Sludge\nnum_replicons :: 4\nref_biomaterial :: DSM 1100, ATCC 27775, LMG 10393\nbiotic_relationship :: Free living\ntrophic_level :: Missing\nrel_to_oxygen :: Missing\nisol_growth_condt :: 124107\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3 (pre-release)\nfinishing_strategy :: Finished\nGOLD Stamp ID :: Gi04678\nType Strain :: Yes\nFunding Program :: DOE-GEBA 2009\nIsolation Site :: sludge (activated sludge, Oss)\nIsolation Comments :: isolated by Van Veen\nTemperature Range :: Mesophile\nDiseases :: None\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Finished\nCurrent Finishing Status :: Finished\nAssembly Method :: Newbler v. 2.3\nGenome Coverage :: 30x\nSequencing Technology :: 454/Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/10/2023 14:19:50\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,825\nCDSs (total) :: 6,766\nGenes (coding) :: 6,758\nCDSs (with protein) :: 6,758\nGenes (RNA) :: 59\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 2\nPseudo Genes (total) :: 8\nCDSs (without protein) :: 8\nPseudo Genes (ambiguous residues) :: 0 of 8\nPseudo Genes (frameshifted) :: 2 of 8\nPseudo Genes (incomplete) :: 5 of 8\nPseudo Genes (internal stop) :: 1 of 8\nCRISPR Arrays :: 6\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Haliscomenobacter hydrossis
COORDINATES: protein motif:HMM:NF024685.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013769008.1
COORDINATES: similar to AA sequence:RefSeq:WP_013769007.1
COORDINATES: similar to AA sequence:RefSeq:WP_003436780.1
COORDINATES: similar to AA sequence:RefSeq:WP_003436777.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
TerB family tellurite resistance protein
COORDINATES: similar to AA sequence:RefSeq:WP_018619843.1
GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]
GO:0030163 - protein catabolic process [Evidence IEA]
BREX system Lon protease-like protein BrxL
COORDINATES: protein motif:HMM:NF033450.1
COORDINATES: similar to AA sequence:RefSeq:WP_008625910.1
5-methylcytosine restriction system component-like protein
COORDINATES: similar to AA sequence:RefSeq:WP_002868392.1
COORDINATES: similar to AA sequence:RefSeq:WP_015051266.1
COORDINATES: similar to AA sequence:RefSeq:WP_008625904.1
COORDINATES: similar to AA sequence:RefSeq:WP_008625903.1
COORDINATES: similar to AA sequence:RefSeq:WP_008625902.1
COORDINATES: protein motif:HMM:NF027421.2
COORDINATES: similar to AA sequence:RefSeq:WP_008236941.1
COORDINATES: similar to AA sequence:RefSeq:WP_014771255.1
COORDINATES: protein motif:HMM:NF040090.1
COORDINATES: similar to AA sequence:RefSeq:WP_013769001.1
COORDINATES: similar to AA sequence:RefSeq:WP_013769031.1
COORDINATES: similar to AA sequence:RefSeq:WP_013769003.1
COORDINATES: similar to AA sequence:RefSeq:WP_013769033.1
COORDINATES: similar to AA sequence:RefSeq:WP_013766673.1
LytTR family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013769034.1
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013769035.1
COORDINATES: protein motif:HMM:NF016670.2
COORDINATES: protein motif:HMM:NF024554.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003896 - DNA primase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
CHC2 zinc finger domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013768892.1
COORDINATES: similar to AA sequence:RefSeq:WP_013768887.1
COORDINATES: similar to AA sequence:RefSeq:WP_013768894.1
COORDINATES: protein motif:HMM:NF015722.2
formylglycine-generating enzyme family protein
COORDINATES: protein motif:HMM:NF037660.2
COORDINATES: protein motif:HMM:NF024589.2
COORDINATES: similar to AA sequence:RefSeq:WP_013768903.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013763229.1
COORDINATES: protein motif:HMM:TIGR01573.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00287.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF037013.2
COORDINATES: protein motif:HMM:NF012307.2
COORDINATES: protein motif:HMM:TIGR01898.1
GO:0003674 - molecular_function [Evidence IEA]
type III-B CRISPR module RAMP protein Cmr6
COORDINATES: protein motif:HMM:TIGR02580.1
type III-B CRISPR module RAMP protein Cmr4
COORDINATES: protein motif:HMM:NF021236.2
type III-B CRISPR module-associated Cmr3 family protein
COORDINATES: protein motif:HMM:NF023885.2
type III-B CRISPR-associated protein Cas10/Cmr2
COORDINATES: protein motif:HMM:NF014825.2
GO:0046872 - metal ion binding [Evidence IEA]
SEC-C metal-binding domain-containing protein
COORDINATES: protein motif:HMM:NF037736.2
COORDINATES: similar to AA sequence:RefSeq:WP_013768910.1
COORDINATES: similar to AA sequence:RefSeq:WP_013768911.1
COORDINATES: similar to AA sequence:RefSeq:WP_013769067.1
COORDINATES: similar to AA sequence:RefSeq:WP_013768925.1
COORDINATES: similar to AA sequence:RefSeq:WP_013768927.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013769070.1
COORDINATES: similar to AA sequence:RefSeq:WP_013768929.1
COORDINATES: similar to AA sequence:RefSeq:WP_013768930.1
COORDINATES: similar to AA sequence:RefSeq:WP_013769073.1
COORDINATES: protein motif:HMM:NF013776.2
COORDINATES: similar to AA sequence:RefSeq:WP_013768935.1
COORDINATES: similar to AA sequence:RefSeq:WP_013769076.1
COORDINATES: similar to AA sequence:RefSeq:WP_013768938.1
COORDINATES: protein motif:HMM:NF012492.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013768939.1
COORDINATES: protein motif:HMM:NF012493.2
COORDINATES: protein motif:HMM:NF038324.1
COORDINATES: similar to AA sequence:RefSeq:WP_013763207.1
COORDINATES: protein motif:HMM:NF024700.2
COORDINATES: similar to AA sequence:RefSeq:WP_003001696.1
GO:0008832 - dGTPase activity [Evidence IEA]
GO:0015949 - nucleobase-containing small molecule interconversion [Evidence IEA]
SUMF1/EgtB/PvdO family nonheme iron enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_013769092.1
COORDINATES: similar to AA sequence:RefSeq:WP_013767698.1
COORDINATES: similar to AA sequence:RefSeq:WP_013769091.1
COORDINATES: protein motif:HMM:NF017243.2
COORDINATES: protein motif:HMM:NF012552.2
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF018290.2
COORDINATES: protein motif:HMM:NF013124.2
COORDINATES: protein motif:HMM:NF014548.2
COORDINATES: similar to AA sequence:RefSeq:WP_013768977.1
COORDINATES: similar to AA sequence:RefSeq:WP_013768978.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]