Haliscomenobacter hydrossis DSM 1100 plasmid pHALHY01, complete sequence.
Bacteria; Bacteroidota; Saprospiria; Saprospirales; Haliscomenobacteraceae; Haliscomenobacter.
Complete genome sequence of Haliscomenobacter hydrossis type strain (O)
Submitted (26-APR-2011) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP002692.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4087347\nSource DNA and organism available from Hans-Peter Klenk at the\nGerman Collection of Microorganisms and Cell Cultures (DSMZ)\n(hans-peter.klenk@dsmz.de)\nContacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)\n David Bruce (microbe@cuba.jgi-psf.org)\nWhole genome sequencing and draft assembly at JGI-PGF\nFinishing done by JGI-LANL\nAnnotation by JGI-ORNL and JGI-PGF\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Haliscomenobacter hydrossis O, DSM 1100\ncollection_date :: before 1973\nlat_lon :: Missing\ndepth :: Missing\nalt_elev :: Missing\ncountry :: Netherlands\nenvironment :: Sludge\nnum_replicons :: 4\nref_biomaterial :: DSM 1100, ATCC 27775, LMG 10393\nbiotic_relationship :: Free living\ntrophic_level :: Missing\nrel_to_oxygen :: Missing\nisol_growth_condt :: 124107\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3 (pre-release)\nfinishing_strategy :: Finished\nGOLD Stamp ID :: Gi04678\nType Strain :: Yes\nFunding Program :: DOE-GEBA 2009\nIsolation Site :: sludge (activated sludge, Oss)\nIsolation Comments :: isolated by Van Veen\nTemperature Range :: Mesophile\nDiseases :: None\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Finished\nCurrent Finishing Status :: Finished\nAssembly Method :: Newbler v. 2.3\nGenome Coverage :: 30x\nSequencing Technology :: 454/Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/10/2023 14:19:50\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,825\nCDSs (total) :: 6,766\nGenes (coding) :: 6,758\nCDSs (with protein) :: 6,758\nGenes (RNA) :: 59\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 2\nPseudo Genes (total) :: 8\nCDSs (without protein) :: 8\nPseudo Genes (ambiguous residues) :: 0 of 8\nPseudo Genes (frameshifted) :: 2 of 8\nPseudo Genes (incomplete) :: 5 of 8\nPseudo Genes (internal stop) :: 1 of 8\nCRISPR Arrays :: 6\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Haliscomenobacter hydrossis
COORDINATES: similar to AA sequence:RefSeq:WP_013769033.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013766673.1
LytTR family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013769034.1
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013769035.1
COORDINATES: similar to AA sequence:RefSeq:WP_013769043.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF040090.1
COORDINATES: similar to AA sequence:RefSeq:WP_013767262.1
COORDINATES: similar to AA sequence:RefSeq:WP_013769044.1
COORDINATES: similar to AA sequence:RefSeq:WP_013769045.1
COORDINATES: similar to AA sequence:RefSeq:WP_013768896.1
COORDINATES: similar to AA sequence:RefSeq:WP_013768895.1
COORDINATES: similar to AA sequence:RefSeq:WP_013767108.1
SUMF1/EgtB/PvdO family nonheme iron enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_020569755.1
COORDINATES: protein motif:HMM:NF024180.2
COORDINATES: similar to AA sequence:RefSeq:WP_020879351.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018621656.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_013769051.1
COORDINATES: similar to AA sequence:RefSeq:WP_001746429.1
COORDINATES: protein motif:HMM:NF037736.2
COORDINATES: similar to AA sequence:RefSeq:WP_013768910.1
COORDINATES: similar to AA sequence:RefSeq:WP_013768911.1
COORDINATES: similar to AA sequence:RefSeq:WP_007139479.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_013931254.1
COORDINATES: similar to AA sequence:RefSeq:WP_013631656.1
GDCCVxC domain-containing (seleno)protein
COORDINATES: similar to AA sequence:RefSeq:WP_013764195.1
Crp/Fnr family transcriptional regulator
COORDINATES: protein motif:HMM:NF024242.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF016041.2
COORDINATES: similar to AA sequence:RefSeq:WP_019976057.1
COORDINATES: similar to AA sequence:RefSeq:WP_009185312.1
COORDINATES: similar to AA sequence:RefSeq:WP_020080996.1
COORDINATES: similar to AA sequence:RefSeq:WP_013769067.1
COORDINATES: similar to AA sequence:RefSeq:WP_013768925.1
COORDINATES: similar to AA sequence:RefSeq:WP_013768927.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013769070.1
COORDINATES: similar to AA sequence:RefSeq:WP_013769071.1
COORDINATES: similar to AA sequence:RefSeq:WP_013768930.1
COORDINATES: similar to AA sequence:RefSeq:WP_013769073.1
COORDINATES: similar to AA sequence:RefSeq:WP_016989152.1
COORDINATES: protein motif:HMM:NF013124.2
COORDINATES: protein motif:HMM:NF024816.2
COORDINATES: similar to AA sequence:RefSeq:WP_013769075.1
COORDINATES: similar to AA sequence:RefSeq:WP_013769076.1
COORDINATES: similar to AA sequence:RefSeq:WP_013768938.1
COORDINATES: similar to AA sequence:RefSeq:WP_013769081.1
COORDINATES: similar to AA sequence:RefSeq:WP_013764197.1
COORDINATES: similar to AA sequence:RefSeq:WP_013764196.1
COORDINATES: similar to AA sequence:RefSeq:WP_002978519.1
COORDINATES: similar to AA sequence:RefSeq:WP_006265838.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_020212286.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007645419.1
COORDINATES: similar to AA sequence:RefSeq:WP_008635308.1
COORDINATES: protein motif:HMM:NF012575.2
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002981197.1
COORDINATES: similar to AA sequence:RefSeq:WP_013765885.1
COORDINATES: similar to AA sequence:RefSeq:WP_013764236.1
heavy metal-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013764235.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019949138.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013764233.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013764232.1
COORDINATES: similar to AA sequence:RefSeq:WP_012931292.1
COORDINATES: similar to AA sequence:RefSeq:WP_008463756.1
COORDINATES: similar to AA sequence:RefSeq:WP_018616671.1
COORDINATES: similar to AA sequence:RefSeq:WP_018616670.1
COORDINATES: similar to AA sequence:RefSeq:WP_002981088.1
COORDINATES: similar to AA sequence:RefSeq:WP_002981087.1
COORDINATES: protein motif:HMM:NF019351.2
GO:0005507 - copper ion binding [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: protein motif:HMM:NF017393.2
COORDINATES: similar to AA sequence:RefSeq:WP_013764231.1
GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]; GO:0043682 - P-type divalent copper transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF020683.2
COORDINATES: similar to AA sequence:RefSeq:WP_004320828.1
COORDINATES: protein motif:HMM:NF024554.2
COORDINATES: similar to AA sequence:RefSeq:WP_012327519.1
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: similar to AA sequence:RefSeq:WP_014029194.1
COORDINATES: similar to AA sequence:RefSeq:WP_013769109.1
COORDINATES: similar to AA sequence:RefSeq:WP_013769110.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF040218.1
COORDINATES: similar to AA sequence:RefSeq:WP_009578550.1
COORDINATES: similar to AA sequence:RefSeq:WP_019333711.1
COORDINATES: similar to AA sequence:RefSeq:WP_013030558.1
type I restriction endonuclease subunit R
COORDINATES: protein motif:HMM:NF012493.2
COORDINATES: protein motif:HMM:NF039739.1
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011320215.1
class I SAM-dependent DNA methyltransferase
COORDINATES: protein motif:HMM:NF027421.2
COORDINATES: similar to AA sequence:RefSeq:WP_008624237.1
COORDINATES: similar to AA sequence:RefSeq:WP_013769031.1
COORDINATES: similar to AA sequence:RefSeq:WP_013769032.1