Pseudomonas cannabina pv. alisalensis strain MAFF 301419 plasmid unnamed, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.
Submitted (23-DEC-2020) Institute of Fruit Tree and Tea Science, National Agriculture and Food Research Organization (NARO), Fujimoto 2-1, Tsukuba, Ibaraki 305-8605, Japan, Tsukuba, Ibaraki 305-8605, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nCP067023.1.\nBacteria and source DNA available from NARO Genebank.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: DEC-2020\nAssembly Method :: Unicycler v. 0.4.7\nAssembly Name :: 301419\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 247.0x\nSequencing Technology :: DNBSEQ; Oxford Nanopore GridION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/08/2022 07:44:16\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,518\nCDSs (total) :: 5,433\nGenes (coding) :: 5,249\nCDSs (with protein) :: 5,249\nGenes (RNA) :: 85\nrRNAs :: 7, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 5, 5 (5S, 16S, 23S)\ntRNAs :: 64\nncRNAs :: 4\nPseudo Genes (total) :: 184\nCDSs (without protein) :: 184\nPseudo Genes (ambiguous residues) :: 0 of 184\nPseudo Genes (frameshifted) :: 71 of 184\nPseudo Genes (incomplete) :: 99 of 184\nPseudo Genes (internal stop) :: 47 of 184\nPseudo Genes (multiple problems) :: 30 of 184\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_003373511.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002556165.1
COORDINATES: similar to AA sequence:RefSeq:WP_003348562.1
COORDINATES: similar to AA sequence:RefSeq:WP_007253369.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_086558319.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611524.1
GO:0004803 - transposase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005748813.1
COORDINATES: similar to AA sequence:RefSeq:WP_003281858.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010433197.1
COORDINATES: protein motif:HMM:NF026795.2
COORDINATES: similar to AA sequence:RefSeq:WP_004666965.1
COORDINATES: similar to AA sequence:RefSeq:NP_490535.1
COORDINATES: similar to AA sequence:RefSeq:WP_004666928.1
IS256-like element ISPsy17 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_003887303.1
COORDINATES: similar to AA sequence:RefSeq:NP_252867.1
COORDINATES: similar to AA sequence:RefSeq:WP_011102937.1
COORDINATES: similar to AA sequence:RefSeq:WP_004887538.1
COORDINATES: similar to AA sequence:RefSeq:WP_002554417.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611532.1
COORDINATES: similar to AA sequence:RefSeq:WP_020313295.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017683476.1
COORDINATES: similar to AA sequence:RefSeq:WP_011168036.1
COORDINATES: similar to AA sequence:RefSeq:WP_005734861.1
COORDINATES: similar to AA sequence:RefSeq:WP_005734862.1
COORDINATES: similar to AA sequence:RefSeq:WP_020304372.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001433474.1
COORDINATES: similar to AA sequence:RefSeq:WP_011899332.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612095.1
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017700336.1
COORDINATES: similar to AA sequence:RefSeq:WP_001262004.1
COORDINATES: similar to AA sequence:RefSeq:WP_011282515.1
COORDINATES: similar to AA sequence:RefSeq:WP_004666797.1
COORDINATES: similar to AA sequence:RefSeq:WP_002556110.1
COORDINATES: similar to AA sequence:RefSeq:WP_005621527.1
COORDINATES: similar to AA sequence:RefSeq:WP_002556024.1
COORDINATES: similar to AA sequence:RefSeq:WP_020312565.1
COORDINATES: similar to AA sequence:RefSeq:WP_017684686.1