Acinetobacter indicus strain TQ23 plasmid p23TQ-NDM, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter.
Emergence of plasmid-mediated high-level tigecycline resistance genes in animals and humans
Submitted (17-OCT-2019) Institute of Food Safety and Nutrition, Jiangsu Academy of Agricultural Sciences, Zhongling Street, Nanjing 210014, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP045197.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. v. 3.11.1\nAssembly Name :: Unicycler\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 80.0x\nSequencing Technology :: Oxford Nanopore MiniION; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/01/2022 01:13:06\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,968\nCDSs (total) :: 2,862\nGenes (coding) :: 2,777\nCDSs (with protein) :: 2,777\nGenes (RNA) :: 106\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 81\nncRNAs :: 4\nPseudo Genes (total) :: 85\nCDSs (without protein) :: 85\nPseudo Genes (ambiguous residues) :: 0 of 85\nPseudo Genes (frameshifted) :: 35 of 85\nPseudo Genes (incomplete) :: 54 of 85\nPseudo Genes (internal stop) :: 14 of 85\nPseudo Genes (multiple problems) :: 17 of 85\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_000422636.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
APH(3')-VI family aminoglycoside O-phosphotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_032072965.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS3-like element ISAba14 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_004993319.1
COORDINATES: similar to AA sequence:RefSeq:WP_004993232.1
COORDINATES: similar to AA sequence:RefSeq:WP_004993231.1
COORDINATES: similar to AA sequence:RefSeq:WP_005254881.1
COORDINATES: similar to AA sequence:RefSeq:WP_015060720.1
COORDINATES: similar to AA sequence:RefSeq:WP_017480467.1
COORDINATES: similar to AA sequence:RefSeq:WP_004999734.1
COORDINATES: similar to AA sequence:RefSeq:WP_015060718.1
COORDINATES: similar to AA sequence:RefSeq:WP_015060717.1
COORDINATES: similar to AA sequence:RefSeq:WP_015060716.1
COORDINATES: similar to AA sequence:RefSeq:WP_017480466.1
COORDINATES: similar to AA sequence:RefSeq:WP_005000189.1
COORDINATES: similar to AA sequence:RefSeq:WP_005000193.1
COORDINATES: similar to AA sequence:RefSeq:WP_005000195.1
COORDINATES: similar to AA sequence:RefSeq:WP_005000449.1
COORDINATES: similar to AA sequence:RefSeq:WP_005000446.1
COORDINATES: similar to AA sequence:RefSeq:WP_005000443.1
COORDINATES: similar to AA sequence:RefSeq:WP_005000442.1
COORDINATES: similar to AA sequence:RefSeq:WP_005000439.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108931.1
GO:0030255 - protein secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005000436.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108929.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_005108928.1
COORDINATES: similar to AA sequence:RefSeq:WP_015060713.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005108926.1
COORDINATES: similar to AA sequence:RefSeq:WP_005404871.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108924.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015060710.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005108922.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108921.1
COORDINATES: similar to AA sequence:RefSeq:WP_017480461.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108919.1
COORDINATES: similar to AA sequence:RefSeq:WP_004999358.1
COORDINATES: similar to AA sequence:RefSeq:WP_015060707.1
COORDINATES: similar to AA sequence:RefSeq:WP_004993309.1
COORDINATES: similar to AA sequence:RefSeq:WP_015060705.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004993314.1
COORDINATES: similar to AA sequence:RefSeq:WP_004993315.1
COORDINATES: protein motif:HMM:NF022853.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
protein-disulfide reductase DsbD family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006399920.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
twin-arginine translocation (TAT) pathway signal sequence domain protein
COORDINATES: similar to AA sequence:RefSeq:WP_004201168.1
GO:0004640 - phosphoribosylanthranilate isomerase activity [Evidence IEA]
GO:0000162 - tryptophan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004201167.1
COORDINATES: similar to AA sequence:RefSeq:WP_032492661.1
subclass B1 metallo-beta-lactamase NDM-1
COORDINATES: similar to AA sequence:RefSeq:WP_076611607.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.