Acinetobacter indicus strain TQ23 plasmid p23TQ-37k, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter.
Emergence of plasmid-mediated high-level tigecycline resistance genes in animals and humans
Submitted (17-OCT-2019) Institute of Food Safety and Nutrition, Jiangsu Academy of Agricultural Sciences, Zhongling Street, Nanjing 210014, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP045196.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. v. 3.11.1\nAssembly Name :: Unicycler\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 80.0x\nSequencing Technology :: Oxford Nanopore MiniION; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/01/2022 01:13:06\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,968\nCDSs (total) :: 2,862\nGenes (coding) :: 2,777\nCDSs (with protein) :: 2,777\nGenes (RNA) :: 106\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 81\nncRNAs :: 4\nPseudo Genes (total) :: 85\nCDSs (without protein) :: 85\nPseudo Genes (ambiguous residues) :: 0 of 85\nPseudo Genes (frameshifted) :: 35 of 85\nPseudo Genes (incomplete) :: 54 of 85\nPseudo Genes (internal stop) :: 14 of 85\nPseudo Genes (multiple problems) :: 17 of 85\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_004641785.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004641789.1
COORDINATES: similar to AA sequence:RefSeq:WP_004641793.1
COORDINATES: similar to AA sequence:RefSeq:WP_005084929.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016437.2
COORDINATES: similar to AA sequence:RefSeq:WP_016068456.1
COORDINATES: similar to AA sequence:RefSeq:WP_016658858.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_004674113.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF018926.2
COORDINATES: similar to AA sequence:RefSeq:WP_004986359.1
COORDINATES: similar to AA sequence:RefSeq:WP_000158575.1
COORDINATES: similar to AA sequence:RefSeq:WP_004641757.1
COORDINATES: similar to AA sequence:RefSeq:WP_014859803.1
phage regulatory protein/antirepressor Ant
COORDINATES: similar to AA sequence:RefSeq:WP_020753597.1
COORDINATES: similar to AA sequence:RefSeq:WP_020753599.1
COORDINATES: similar to AA sequence:RefSeq:WP_004781929.1
COORDINATES: protein motif:HMM:NF023657.2
COORDINATES: similar to AA sequence:RefSeq:WP_004641776.1
COORDINATES: similar to AA sequence:RefSeq:WP_004641779.1
COORDINATES: protein motif:HMM:NF040375.1
COORDINATES: similar to AA sequence:RefSeq:WP_004641782.1