Salinigranum rubrum strain GX10 plasmid unnamed5, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Haloferacales; Haloferacaceae; Salinigranum.
Complete genome sequence of Salinigranum rubrum GX10T, an extremely halophilic archaeon isolated from a marine solar saltern
Submitted (23-JAN-2018) College of Life Science, ZheJiang University, YuHangTang Road, HangZhou, ZheJiang 310058, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP026314.1.\nBacteria and source DNA available from CGMCC/JCM.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS:3.0-Data-START##\nassembly :: missing\nbiome :: Marine solar saltern brine\ncollection_date :: 2009\nenv_package :: missing\nfeature :: missing\ngeo_loc_name :: Gangxi marine solar saltern near Weihai\n city, Shangdong Province, PR, China\ninvestigation_type :: bacteria_archaea\nisol_growth_condt :: missing\nlat_lon :: 37deg22'57\" N, 122deg27'49\" E\nmaterial :: missing\nproject_name :: missing\nseq_meth :: PacBio\nProperty :: Term\nGram stain :: negative\nCell shape :: pleomorphic-shaped\nMotility :: Motile\nTemperature range :: 20-50_C\nOptimum temperature :: 37_C\npH range; Optimum :: 5.0_9.0; 7.0\nCarbon source :: D-glucose, D-mannose, D-galactose, sucrose,\n lactose, glycerol, D-mannitol, D-sorbitol,\n acetate, pyruvate, DL-lactate, L-malate,\n fumarate and citrate.\nSalinity :: 1.4_4.8 M NaCl (optimum 3.1M)\nOxygen requirement :: Facultatively Anaerobic\nBiotic relationship :: free-living\nPathogenicity :: non-pathogen\nAltitude :: Not reported\nnum_replicons :: 6\nfinishing_strategy :: missing\nref_biomaterial :: missing\n##MIGS:3.0-Data-END##\n\n##Genome-Assembly-Data-START##\nAssembly Date :: JUN-2017\nAssembly Method :: PBcR v. OCT-2011\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 293.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/30/2023 11:06:32\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,069\nCDSs (total) :: 5,012\nGenes (coding) :: 4,733\nCDSs (with protein) :: 4,733\nGenes (RNA) :: 57\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 2\nPseudo Genes (total) :: 279\nCDSs (without protein) :: 279\nPseudo Genes (ambiguous residues) :: 0 of 279\nPseudo Genes (frameshifted) :: 193 of 279\nPseudo Genes (incomplete) :: 100 of 279\nPseudo Genes (internal stop) :: 19 of 279\nPseudo Genes (multiple problems) :: 26 of 279\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012618769.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF039243.1
COORDINATES: similar to AA sequence:RefSeq:WP_008583763.1
GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0032775 - DNA methylation on adenine [Evidence IEA]
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004968459.1
COORDINATES: similar to AA sequence:RefSeq:WP_018256105.1
COORDINATES: similar to AA sequence:RefSeq:WP_008444022.1
GO:0003729 - mRNA binding [Evidence IEA]
type II toxin-antitoxin system HicA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008524795.1
COORDINATES: protein motif:HMM:NF012311.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019348.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025873.2
helix-hairpin-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014051805.1
type IV pilin N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF024793.2
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_013440720.1