Salinigranum rubrum strain GX10 plasmid unnamed3, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Haloferacales; Haloferacaceae; Salinigranum.
Complete genome sequence of Salinigranum rubrum GX10T, an extremely halophilic archaeon isolated from a marine solar saltern
Submitted (23-JAN-2018) College of Life Science, ZheJiang University, YuHangTang Road, HangZhou, ZheJiang 310058, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP026312.1.\nBacteria and source DNA available from CGMCC/JCM.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS:3.0-Data-START##\nassembly :: missing\nbiome :: Marine solar saltern brine\ncollection_date :: 2009\nenv_package :: missing\nfeature :: missing\ngeo_loc_name :: Gangxi marine solar saltern near Weihai\n city, Shangdong Province, PR, China\ninvestigation_type :: bacteria_archaea\nisol_growth_condt :: missing\nlat_lon :: 37deg22'57\" N, 122deg27'49\" E\nmaterial :: missing\nproject_name :: missing\nseq_meth :: PacBio\nProperty :: Term\nGram stain :: negative\nCell shape :: pleomorphic-shaped\nMotility :: Motile\nTemperature range :: 20-50_C\nOptimum temperature :: 37_C\npH range; Optimum :: 5.0_9.0; 7.0\nCarbon source :: D-glucose, D-mannose, D-galactose, sucrose,\n lactose, glycerol, D-mannitol, D-sorbitol,\n acetate, pyruvate, DL-lactate, L-malate,\n fumarate and citrate.\nSalinity :: 1.4_4.8 M NaCl (optimum 3.1M)\nOxygen requirement :: Facultatively Anaerobic\nBiotic relationship :: free-living\nPathogenicity :: non-pathogen\nAltitude :: Not reported\nnum_replicons :: 6\nfinishing_strategy :: missing\nref_biomaterial :: missing\n##MIGS:3.0-Data-END##\n\n##Genome-Assembly-Data-START##\nAssembly Date :: JUN-2017\nAssembly Method :: PBcR v. OCT-2011\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 293.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/30/2023 11:06:32\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,069\nCDSs (total) :: 5,012\nGenes (coding) :: 4,733\nCDSs (with protein) :: 4,733\nGenes (RNA) :: 57\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 2\nPseudo Genes (total) :: 279\nCDSs (without protein) :: 279\nPseudo Genes (ambiguous residues) :: 0 of 279\nPseudo Genes (frameshifted) :: 193 of 279\nPseudo Genes (incomplete) :: 100 of 279\nPseudo Genes (internal stop) :: 19 of 279\nPseudo Genes (multiple problems) :: 26 of 279\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014053422.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
trypsin-like peptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_050032404.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011571396.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183467.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183564.1
COORDINATES: similar to AA sequence:RefSeq:WP_006065947.1
COORDINATES: similar to AA sequence:RefSeq:WP_015299910.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488203.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184779.1
primase-like DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009762229.1
VirB4 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_008444896.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488207.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289715.1
COORDINATES: similar to AA sequence:RefSeq:WP_008364410.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053094.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184772.1
COORDINATES: similar to AA sequence:RefSeq:WP_004267580.1
COORDINATES: protein motif:HMM:NF024758.2
GO:0008233 - peptidase activity [Evidence IEA]; GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF033587.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015762108.1
COORDINATES: protein motif:HMM:NF016811.2
COORDINATES: protein motif:HMM:NF015094.2
COORDINATES: protein motif:HMM:NF015400.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
saccharopine dehydrogenase NADP-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008097213.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006183483.1
GO:0046872 - metal ion binding [Evidence IEA]
heavy metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009378262.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004048645.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009378268.1
COORDINATES: similar to AA sequence:RefSeq:WP_009378270.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762313.1
GO:0003994 - aconitate hydratase activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: protein motif:HMM:NF017200.2
GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008094428.1
COORDINATES: similar to AA sequence:RefSeq:WP_006055406.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
plastocyanin/azurin family copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004515577.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006091355.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094419.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048654.1
COORDINATES: similar to AA sequence:RefSeq:WP_009378256.1
COORDINATES: similar to AA sequence:RefSeq:WP_008418141.1
COORDINATES: similar to AA sequence:RefSeq:WP_008414838.1
COORDINATES: protein motif:HMM:NF024109.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015762189.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094430.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094436.1
COORDINATES: similar to AA sequence:RefSeq:WP_007737928.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094437.1
COORDINATES: similar to AA sequence:RefSeq:WP_008007340.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008387748.1
COORDINATES: similar to AA sequence:RefSeq:WP_007997631.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594616.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594615.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594614.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094451.1
COORDINATES: similar to AA sequence:RefSeq:WP_006429139.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_004057111.1
COORDINATES: similar to AA sequence:RefSeq:WP_005039560.1
COORDINATES: similar to AA sequence:RefSeq:WP_008451756.1
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_008313911.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035120.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736502.1
COORDINATES: similar to AA sequence:RefSeq:WP_004516401.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966419.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053400.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035018.1
COORDINATES: similar to AA sequence:RefSeq:WP_008452470.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006183341.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517739.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592237.1
COORDINATES: similar to AA sequence:RefSeq:WP_012659225.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594482.1
COORDINATES: similar to AA sequence:RefSeq:WP_012659227.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004594486.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011222468.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594490.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594491.1
COORDINATES: similar to AA sequence:RefSeq:WP_008388009.1
COORDINATES: similar to AA sequence:RefSeq:WP_008422551.1
COORDINATES: similar to AA sequence:RefSeq:WP_006065873.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762266.1
COORDINATES: similar to AA sequence:RefSeq:WP_008421957.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524600.1
COORDINATES: similar to AA sequence:RefSeq:WP_008444956.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048585.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183361.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594499.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488258.1
COORDINATES: similar to AA sequence:RefSeq:WP_006186969.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736773.1
COORDINATES: similar to AA sequence:RefSeq:WP_005043593.1
COORDINATES: protein motif:HMM:NF024997.2
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_009367823.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008413637.1
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008413640.1
COORDINATES: similar to AA sequence:RefSeq:WP_008413639.1
COORDINATES: similar to AA sequence:RefSeq:WP_008413644.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009367818.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF024799.2
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008413635.1
COORDINATES: similar to AA sequence:RefSeq:WP_009377475.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013429.2
GO:0003824 - catalytic activity [Evidence IEA]
sugar phosphate isomerase/epimerase family protein
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: protein motif:HMM:NF012738.2
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012807608.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013035046.1
COORDINATES: similar to AA sequence:RefSeq:WP_005579533.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004043413.1
transcription initiation factor IIB family protein
COORDINATES: protein motif:HMM:NF037736.2