Salinigranum rubrum strain GX10 plasmid unnamed2, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Haloferacales; Haloferacaceae; Salinigranum.
Complete genome sequence of Salinigranum rubrum GX10T, an extremely halophilic archaeon isolated from a marine solar saltern
Submitted (23-JAN-2018) College of Life Science, ZheJiang University, YuHangTang Road, HangZhou, ZheJiang 310058, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP026311.1.\nBacteria and source DNA available from CGMCC/JCM.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS:3.0-Data-START##\nassembly :: missing\nbiome :: Marine solar saltern brine\ncollection_date :: 2009\nenv_package :: missing\nfeature :: missing\ngeo_loc_name :: Gangxi marine solar saltern near Weihai\n city, Shangdong Province, PR, China\ninvestigation_type :: bacteria_archaea\nisol_growth_condt :: missing\nlat_lon :: 37deg22'57\" N, 122deg27'49\" E\nmaterial :: missing\nproject_name :: missing\nseq_meth :: PacBio\nProperty :: Term\nGram stain :: negative\nCell shape :: pleomorphic-shaped\nMotility :: Motile\nTemperature range :: 20-50_C\nOptimum temperature :: 37_C\npH range; Optimum :: 5.0_9.0; 7.0\nCarbon source :: D-glucose, D-mannose, D-galactose, sucrose,\n lactose, glycerol, D-mannitol, D-sorbitol,\n acetate, pyruvate, DL-lactate, L-malate,\n fumarate and citrate.\nSalinity :: 1.4_4.8 M NaCl (optimum 3.1M)\nOxygen requirement :: Facultatively Anaerobic\nBiotic relationship :: free-living\nPathogenicity :: non-pathogen\nAltitude :: Not reported\nnum_replicons :: 6\nfinishing_strategy :: missing\nref_biomaterial :: missing\n##MIGS:3.0-Data-END##\n\n##Genome-Assembly-Data-START##\nAssembly Date :: JUN-2017\nAssembly Method :: PBcR v. OCT-2011\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 293.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/30/2023 11:06:32\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,069\nCDSs (total) :: 5,012\nGenes (coding) :: 4,733\nCDSs (with protein) :: 4,733\nGenes (RNA) :: 57\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 2\nPseudo Genes (total) :: 279\nCDSs (without protein) :: 279\nPseudo Genes (ambiguous residues) :: 0 of 279\nPseudo Genes (frameshifted) :: 193 of 279\nPseudo Genes (incomplete) :: 100 of 279\nPseudo Genes (internal stop) :: 19 of 279\nPseudo Genes (multiple problems) :: 26 of 279\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF012234.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015789376.1
Replication protein A protects and stabilize the intermediate ssDNA that is generated by the unwinding action of a DNA helicase at the replication fork. In addition, SSBs prevent the formation of secondary structures by single-stranded template DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008386902.1
COORDINATES: protein motif:HMM:NF013964.2
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013035182.1
COORDINATES: similar to AA sequence:RefSeq:WP_015299360.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004213885.1
COORDINATES: similar to AA sequence:RefSeq:WP_008441309.1
COORDINATES: similar to AA sequence:RefSeq:WP_009486637.1
COORDINATES: similar to AA sequence:RefSeq:WP_008322218.1
COORDINATES: protein motif:HMM:NF019151.2
COORDINATES: protein motif:HMM:NF015210.2
COORDINATES: similar to AA sequence:RefSeq:WP_007273763.1
COORDINATES: similar to AA sequence:RefSeq:WP_012659171.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009486642.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0140658 - ATP-dependent chromatin remodeler activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005533575.1
COORDINATES: similar to AA sequence:RefSeq:WP_006065896.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014555899.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035688.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018258693.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517766.1
COORDINATES: protein motif:HMM:NF037740.2
COORDINATES: similar to AA sequence:RefSeq:WP_006093008.1
COORDINATES: similar to AA sequence:RefSeq:WP_006093007.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007738582.1
phage integrase SAM-like domain-containing protein
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_014865892.1
COORDINATES: similar to AA sequence:RefSeq:WP_015408669.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008012356.1
metal-dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004057837.1
GO:0005507 - copper ion binding [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012945099.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945098.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
plastocyanin/azurin family copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004594548.1
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004594549.1
COORDINATES: protein motif:HMM:NF016107.2
GO:0008168 - methyltransferase activity [Evidence IEA]
isoprenylcysteine carboxylmethyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011222434.1
COORDINATES: protein motif:HMM:NF022101.2
COORDINATES: similar to AA sequence:RefSeq:WP_011222433.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594554.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594556.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594558.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004594559.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594560.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_011222432.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061011.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
saccharopine dehydrogenase NADP-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004061012.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004061013.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594562.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594563.1
COORDINATES: similar to AA sequence:RefSeq:WP_008387949.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594566.1
TFIIB-type zinc ribbon-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004594567.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
GO:0006784 - heme A biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004594568.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594569.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004594570.1
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0071586 - CAAX-box protein processing [Evidence IEA]
type II CAAX endopeptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004594571.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013752.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - DNA transposition [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004518545.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594574.1
COORDINATES: similar to AA sequence:RefSeq:WP_008413706.1
GO:0070069 - cytochrome complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0019646 - aerobic electron transport chain [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007979216.1
GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor [Evidence IEA]
cytochrome d ubiquinol oxidase subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_008413708.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_004594577.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594578.1
COORDINATES: similar to AA sequence:RefSeq:WP_005039558.1
COORDINATES: similar to AA sequence:RefSeq:WP_005039560.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594550.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594626.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014864302.1
COORDINATES: similar to AA sequence:RefSeq:WP_014864301.1
COORDINATES: similar to AA sequence:RefSeq:WP_005533557.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736843.1
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024909.2
COORDINATES: similar to AA sequence:RefSeq:WP_006079264.1
MaoC/PaaZ C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004060157.1
class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC
COORDINATES: similar to AA sequence:RefSeq:WP_008385356.1
COORDINATES: similar to AA sequence:RefSeq:WP_009367590.1
COORDINATES: protein motif:HMM:NF021378.2
COORDINATES: similar to AA sequence:RefSeq:WP_009487620.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009378270.1
COORDINATES: similar to AA sequence:RefSeq:WP_009378268.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594599.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048645.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007741536.1
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007143706.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006431920.1
GO:0046872 - metal ion binding [Evidence IEA]
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004594613.1
COORDINATES: similar to AA sequence:RefSeq:WP_008312196.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009762322.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048654.1
COORDINATES: similar to AA sequence:RefSeq:WP_007997631.1
COORDINATES: similar to AA sequence:RefSeq:WP_008387748.1
COORDINATES: similar to AA sequence:RefSeq:WP_008385350.1
COORDINATES: similar to AA sequence:RefSeq:WP_008385346.1
GO:0005267 - potassium channel activity [Evidence IEA]
GO:0034220 - monoatomic ion transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011222408.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008414027.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762314.1
COORDINATES: similar to AA sequence:RefSeq:WP_006076425.1
COORDINATES: similar to AA sequence:RefSeq:WP_008425301.1
COORDINATES: similar to AA sequence:RefSeq:WP_007737928.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094436.1
COORDINATES: protein motif:HMM:NF012791.2
GO:0032559 - adenyl ribonucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005580814.1
COORDINATES: similar to AA sequence:RefSeq:WP_009378256.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094419.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091355.1
COORDINATES: similar to AA sequence:RefSeq:WP_004515577.1
COORDINATES: similar to AA sequence:RefSeq:WP_006055406.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094428.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762313.1
GO:0003994 - aconitate hydratase activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008097213.1
GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]; GO:0043682 - P-type divalent copper transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004972312.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945319.1
sulfite exporter TauE/SafE family protein
COORDINATES: protein motif:HMM:NF015094.2
COORDINATES: protein motif:HMM:NF016811.2
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_007538741.1
COORDINATES: similar to AA sequence:RefSeq:WP_007737655.1
COORDINATES: protein motif:HMM:NF002222.0
COORDINATES: similar to AA sequence:RefSeq:WP_014051299.1
RNA-guided endonuclease TnpB family protein
COORDINATES: protein motif:HMM:NF012600.2
transcription initiation factor IIB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008308598.1
COORDINATES: similar to AA sequence:RefSeq:WP_007737667.1
COORDINATES: similar to AA sequence:RefSeq:WP_011322367.1
COORDINATES: protein motif:HMM:NF013277.2
COORDINATES: similar to AA sequence:RefSeq:WP_012660312.1
COORDINATES: similar to AA sequence:RefSeq:WP_012660313.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043411.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736461.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014556587.1
COORDINATES: protein motif:HMM:NF025056.2
GO:0003953 - NAD+ nucleosidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
toll/interleukin-1 receptor domain-containing protein
COORDINATES: protein motif:HMM:NF014678.2