Rissa tridactyla isolate bRisTri1 chromosome 30, bRisTri1.patW.cur.20221130, whole genome shotgun sequence.
type: Entry
definition: Rissa tridactyla isolate bRisTri1 chromosome 30, bRisTri1.patW.cur.20221130, whole genome shotgun sequence.
sequence version: NC_071495.1
sequence date: 2023-03-15
sequence: sequence
division: CON
label: NC_071495.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA940128
dblink: SAMN32104255
keyword: WGS
keyword: RefSeq
source: Rissa tridactyla (black-legged kittiwake)
organism: Rissa tridactyla
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Laridae; Rissa.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM053014.1.\nAssembly name: bRisTri1.patW.cur.20221130\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2023/02/09. The original whole-genome shotgun project has the\naccession JAPUFG000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 30-NOV-2022\nAssembly Method :: hifiasm v. 0.16.1+galaxy2; Bionano Solve\n v. 3.7.0+galaxy0; SALSA2 v. 2.3+galaxy2\nAssembly Name :: bRisTri1.patW.cur.20221130\nDiploid :: Paternal Haplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 33.0x\nSequencing Technology :: PacBio Sequel II HiFi; Bionano DLS; Arima\n Hi-C v2\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_028500815.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/08/2023\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 213719
topology: linear
so has quality: SO_0000987
location: 1..213719
location: region:1-213719:1
RO_0002162: 75485

NC_071495
type: RefSeq
SIO_000068: refseq

PRJNA940128
type: BioProject
SIO_000068: bioproject

SAMN32104255
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:213719:1
position: 213719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-213719:1:source
so part of: sequence
organism: Rissa tridactyla
mol type: genomic DNA
isolate: bRisTri1
chromosome: 30
sex: female
tissue type: blood
dev stage: adult
country: USA: Middleton Island, Alaska
lat lon: 59.43 N 146.34 W
collection date: 2008/2010
collected by: Kyle Elliott

75485
type: Taxonomy
SIO_000068: taxonomy

LOC128901869
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: LOC128901869
note: Ig mu chain C region-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(<5..79334)
location: region:5-79334:-1
so has part: feature:5-79334:-1:exon
subclass of: SO_0000010

128901869
type: Gene
SIO_000068: ncbigene

position:5:-1
position: 5
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:79334:-1
position: 79334
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5-79334:-1:exon

LOC128901869
type: Constant Region
subclass of: SO_0001834
RO_0002162: 75485
gene: LOC128901869
standard name: Ig mu chain C region-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
SIO_010081: LOC128901869
subclass of: SO_0000673
so part of: LOC128901869
location: complement(join(<5..100,3927..4256,4710..5025,6970..7275,15002..15079,79048..79334))
location: region:5-79334:-1
so has part: feature:79048-79334:-1:exon
so has part: feature:15002-15079:-1:exon
so has part: feature:6970-7275:-1:exon
so has part: feature:4710-5025:-1:exon
so has part: feature:3927-4256:-1:exon
so has part: feature:5-100:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:79048-79334:-1:exon

position:79048:-1
position: 79048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:15002-15079:-1:exon

position:15002:-1
position: 15002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15079:-1
position: 15079
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6970-7275:-1:exon

position:6970:-1
position: 6970
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7275:-1
position: 7275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4710-5025:-1:exon

position:4710:-1
position: 4710
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5025:-1
position: 5025
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3927-4256:-1:exon

position:3927:-1
position: 3927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4256:-1
position: 4256
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5-100:-1:exon

position:100:-1
position: 100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC128901869
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: LOC128901869
exception: rearrangement required for product
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: Ig mu chain C region-like
SIO_010081: LOC128901869
subclass of: SO_0000673
so part of: LOC128901869
location: complement(join(<5..100,3927..4256,4710..5025,6970..7275,15002..15079,79048..79252))
location: region:5-79252:-1
so has part: feature:79048-79252:-1:exon
so has part: feature:15002-15079:-1:exon
so has part: feature:6970-7275:-1:exon
so has part: feature:4710-5025:-1:exon
so has part: feature:3927-4256:-1:exon
so has part: feature:5-100:-1:exon

position:79252:-1
position: 79252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:79048-79252:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:15002-15079:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6970-7275:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4710-5025:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3927-4256:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5-100:-1:exon

LOC128901864
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: LOC128901864
note: uncharacterized LOC128901864; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 396..1134
location: region:396-1134:1
so has part: feature:396-1134:1:exon
subclass of: SO_0000011

128901864
type: Gene
SIO_000068: ncbigene

position:396:1
position: 396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1134:1
position: 1134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:396-1134:1:exon

LOC128901864
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 75485
nc RNA class: lncRNA
gene: LOC128901864
product: uncharacterized LOC128901864
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XR_008463541.1
SIO_010081: LOC128901864
subclass of: SO_0000673
so part of: LOC128901864
location: join(396..488,656..864,1033..1134)
location: region:396-1134:1
so has part: feature:396-488:1:exon
so has part: feature:656-864:1:exon
so has part: feature:1033-1134:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:396-488:1:exon

position:488:1
position: 488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:656-864:1:exon

position:656:1
position: 656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:864:1
position: 864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1033-1134:1:exon

position:1033:1
position: 1033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC128901861
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: LOC128901861
note: immunoglobulin heavy variable 3-23-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(77182..78644)
location: region:77182-78644:-1
so has part: feature:77182-78644:-1:exon
subclass of: SO_0000010

128901861
type: Gene
SIO_000068: ncbigene

position:77182:-1
position: 77182
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:78644:-1
position: 78644
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:77182-78644:-1:exon

LOC128901861
type: Variable Segment
subclass of: SO_0000466
RO_0002162: 75485
gene: LOC128901861
standard name: immunoglobulin heavy variable 3-23-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 420 Proteins
SIO_010081: LOC128901861
subclass of: SO_0000673
so part of: LOC128901861
location: complement(join(77182..77698,77809..78644))
location: region:77182-78644:-1
so has part: feature:77809-78644:-1:exon
so has part: feature:77182-77698:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:77809-78644:-1:exon

position:77809:-1
position: 77809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:77182-77698:-1:exon

position:77698:-1
position: 77698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC128901861
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: LOC128901861
exception: rearrangement required for product
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: immunoglobulin heavy variable 3-23-like
SIO_010081: LOC128901861
subclass of: SO_0000673
so part of: LOC128901861
location: complement(join(77312..77698,77809..77860))
location: region:77312-77860:-1
so has part: feature:77809-77860:-1:exon
so has part: feature:77312-77698:-1:exon

position:77312:-1
position: 77312
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:77860:-1
position: 77860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:77809-77860:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:77312-77698:-1:exon

LOC128901841
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: LOC128901841
note: Ig heavy chain V-III region HPC76-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(80223..80658)
location: region:80223-80658:-1
so has part: feature:80223-80658:-1:exon
subclass of: SO_0000010

128901841
type: Gene
SIO_000068: ncbigene

position:80223:-1
position: 80223
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:80658:-1
position: 80658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:80223-80658:-1:exon

LOC128901841
type: Variable Segment
subclass of: SO_0000466
RO_0002162: 75485
gene: LOC128901841
standard name: Ig heavy chain V-III region HPC76-like
note: Derived by automated computational analysis using gene prediction method: Gnomon.
SIO_010081: LOC128901841
subclass of: SO_0000673
so part of: LOC128901841
location: complement(80223..80658)
location: region:80223-80658:-1
so has part: feature:80223-80658:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:80223-80658:-1:exon

LOC128901841
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: LOC128901841
exception: rearrangement required for product
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: Ig heavy chain V-III region HPC76-like
SIO_010081: LOC128901841
subclass of: SO_0000673
so part of: LOC128901841
location: complement(80223..80627)
location: region:80223-80627:-1
so has part: feature:80223-80627:-1:exon

position:80627:-1
position: 80627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:80223-80627:-1:exon

LOC128901842
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: LOC128901842
note: immunoglobulin heavy variable 3-23-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(81185..83935)
location: region:81185-83935:-1
so has part: feature:81185-83935:-1:exon
subclass of: SO_0000010

128901842
type: Gene
SIO_000068: ncbigene

position:81185:-1
position: 81185
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:83935:-1
position: 83935
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:81185-83935:-1:exon

LOC128901842
type: Variable Segment
subclass of: SO_0000466
RO_0002162: 75485
gene: LOC128901842
standard name: immunoglobulin heavy variable 3-23-like
note: Derived by automated computational analysis using gene prediction method: Gnomon.
SIO_010081: LOC128901842
subclass of: SO_0000673
so part of: LOC128901842
location: complement(join(81185..81423,83620..83935))
location: region:81185-83935:-1
so has part: feature:83620-83935:-1:exon
so has part: feature:81185-81423:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:83620-83935:-1:exon

position:83620:-1
position: 83620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:81185-81423:-1:exon

position:81423:-1
position: 81423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC128901842
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: LOC128901842
exception: rearrangement required for product
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: immunoglobulin heavy variable 3-23-like
SIO_010081: LOC128901842
subclass of: SO_0000673
so part of: LOC128901842
location: complement(join(81185..81423,83620..83833))
location: region:81185-83833:-1
so has part: feature:83620-83833:-1:exon
so has part: feature:81185-81423:-1:exon

position:83833:-1
position: 83833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83620-83833:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:81185-81423:-1:exon

LOC128901858
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: LOC128901858
note: Ig heavy chain V region 914-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(81459..83722)
location: region:81459-83722:-1
so has part: feature:81459-83722:-1:exon
subclass of: SO_0000010

128901858
type: Gene
SIO_000068: ncbigene

position:81459:-1
position: 81459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:83722:-1
position: 83722
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:81459-83722:-1:exon

LOC128901858
type: Variable Segment
subclass of: SO_0000466
RO_0002162: 75485
gene: LOC128901858
standard name: Ig heavy chain V region 914-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1045 Proteins
SIO_010081: LOC128901858
subclass of: SO_0000673
so part of: LOC128901858
location: complement(join(81459..82140,83592..83722))
location: region:81459-83722:-1
so has part: feature:83592-83722:-1:exon
so has part: feature:81459-82140:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:83592-83722:-1:exon

position:83592:-1
position: 83592
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:81459-82140:-1:exon

position:82140:-1
position: 82140
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC128901858
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: LOC128901858
exception: rearrangement required for product
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: Ig heavy chain V region 914-like
SIO_010081: LOC128901858
subclass of: SO_0000673
so part of: LOC128901858
location: complement(join(81638..82140,83592..83607))
location: region:81638-83607:-1
so has part: feature:83592-83607:-1:exon
so has part: feature:81638-82140:-1:exon

position:81638:-1
position: 81638
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:83607:-1
position: 83607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83592-83607:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:81638-82140:-1:exon

LOC128901863
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: LOC128901863
note: immunoglobulin heavy variable 3-53-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(84623..85383)
location: region:84623-85383:-1
so has part: feature:84623-85383:-1:exon
subclass of: SO_0000010

128901863
type: Gene
SIO_000068: ncbigene

position:84623:-1
position: 84623
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:85383:-1
position: 85383
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:84623-85383:-1:exon

LOC128901863
type: Variable Segment
subclass of: SO_0000466
RO_0002162: 75485
gene: LOC128901863
standard name: immunoglobulin heavy variable 3-53-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 375 Proteins
SIO_010081: LOC128901863
subclass of: SO_0000673
so part of: LOC128901863
location: complement(84623..85383)
location: region:84623-85383:-1
so has part: feature:84623-85383:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:84623-85383:-1:exon

LOC128901863
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: LOC128901863
exception: rearrangement required for product
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: immunoglobulin heavy variable 3-53-like
SIO_010081: LOC128901863
subclass of: SO_0000673
so part of: LOC128901863
location: complement(84990..85379)
location: region:84990-85379:-1
so has part: feature:84990-85379:-1:exon

position:84990:-1
position: 84990
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:85379:-1
position: 85379
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:84990-85379:-1:exon

LOC128901862
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: LOC128901862
note: immunoglobulin heavy variable 3-23-like; Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(86461..87004)
location: region:86461-87004:-1
so has part: feature:86461-87004:-1:exon

128901862
type: Gene
SIO_000068: ncbigene

position:86461:-1
position: 86461
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:87004:-1
position: 87004
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:86461-87004:-1:exon

LOC128901862
type: Exon
subclass of: SO_0000147
RO_0002162: 75485
gene: LOC128901862
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
pseudo: true
SIO_010081: LOC128901862
subclass of: SO_0000673
so part of: LOC128901862
location: complement(86461..87004)
location: region:86461-87004:-1
so has part: feature:86461-87004:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:86461-87004:-1:exon

LOC128901843
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: LOC128901843
note: immunoglobulin heavy variable 3-23-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(88313..88717)
location: region:88313-88717:-1
so has part: feature:88313-88717:-1:exon
subclass of: SO_0000010

128901843
type: Gene
SIO_000068: ncbigene

position:88313:-1
position: 88313
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:88717:-1
position: 88717
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:88313-88717:-1:exon

LOC128901843
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: LOC128901843
exception: rearrangement required for product
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: immunoglobulin heavy variable 3-23-like
SIO_010081: LOC128901843
subclass of: SO_0000673
so part of: LOC128901843
location: complement(88313..88717)
location: region:88313-88717:-1
so has part: feature:88313-88717:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:88313-88717:-1:exon

LOC128901843
type: Variable Segment
subclass of: SO_0000466
RO_0002162: 75485
gene: LOC128901843
standard name: immunoglobulin heavy variable 3-23-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
SIO_010081: LOC128901843
subclass of: SO_0000673
so part of: LOC128901843
location: complement(88313..88717)
location: region:88313-88717:-1
so has part: feature:88313-88717:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:88313-88717:-1:exon

LOC128901859
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: LOC128901859
note: Ig heavy chain V region 6.96-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(89343..90080)
location: region:89343-90080:-1
so has part: feature:89343-90080:-1:exon
subclass of: SO_0000010

128901859
type: Gene
SIO_000068: ncbigene

position:89343:-1
position: 89343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:90080:-1
position: 90080
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:89343-90080:-1:exon

LOC128901859
type: Variable Segment
subclass of: SO_0000466
RO_0002162: 75485
gene: LOC128901859
standard name: Ig heavy chain V region 6.96-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 369 Proteins
SIO_010081: LOC128901859
subclass of: SO_0000673
so part of: LOC128901859
location: complement(89343..90080)
location: region:89343-90080:-1
so has part: feature:89343-90080:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:89343-90080:-1:exon

LOC128901859
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: LOC128901859
exception: rearrangement required for product
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: Ig heavy chain V region 6.96-like
SIO_010081: LOC128901859
subclass of: SO_0000673
so part of: LOC128901859
location: complement(89530..90039)
location: region:89530-90039:-1
so has part: feature:89530-90039:-1:exon

position:89530:-1
position: 89530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:90039:-1
position: 90039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:89530-90039:-1:exon

LOC128901845
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: LOC128901845
note: immunoglobulin heavy variable 3-23-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(91230..91682)
location: region:91230-91682:-1
so has part: feature:91230-91682:-1:exon
subclass of: SO_0000010

128901845
type: Gene
SIO_000068: ncbigene

position:91230:-1
position: 91230
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:91682:-1
position: 91682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:91230-91682:-1:exon

LOC128901845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: LOC128901845
exception: rearrangement required for product
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: immunoglobulin heavy variable 3-23-like
SIO_010081: LOC128901845
subclass of: SO_0000673
so part of: LOC128901845
location: complement(91230..91682)
location: region:91230-91682:-1
so has part: feature:91230-91682:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:91230-91682:-1:exon

LOC128901845
type: Variable Segment
subclass of: SO_0000466
RO_0002162: 75485
gene: LOC128901845
standard name: immunoglobulin heavy variable 3-23-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
SIO_010081: LOC128901845
subclass of: SO_0000673
so part of: LOC128901845
location: complement(91230..91682)
location: region:91230-91682:-1
so has part: feature:91230-91682:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:91230-91682:-1:exon

LOC128901857
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: LOC128901857
note: immunoglobulin heavy variable 3-23-like; Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(92304..93465)
location: region:92304-93465:-1
so has part: feature:92304-93465:-1:exon

128901857
type: Gene
SIO_000068: ncbigene

position:92304:-1
position: 92304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:93465:-1
position: 93465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:92304-93465:-1:exon

LOC128901857
type: Exon
subclass of: SO_0000147
RO_0002162: 75485
gene: LOC128901857
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 954 Proteins
pseudo: true
SIO_010081: LOC128901857
subclass of: SO_0000673
so part of: LOC128901857
location: complement(92304..93280)
location: region:92304-93280:-1
so has part: feature:92304-93280:-1:exon

position:93280:-1
position: 93280
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:92304-93280:-1:exon

LOC128901857
type: Exon
subclass of: SO_0000147
RO_0002162: 75485
gene: LOC128901857
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 954 Proteins
pseudo: true
SIO_010081: LOC128901857
subclass of: SO_0000673
so part of: LOC128901857
location: complement(93391..93465)
location: region:93391-93465:-1
so has part: feature:93391-93465:-1:exon

position:93391:-1
position: 93391
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:93391-93465:-1:exon

LOC128901860
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: LOC128901860
note: immunoglobulin heavy variable 3-23-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 93408..93998
location: region:93408-93998:1
so has part: feature:93408-93998:1:exon
subclass of: SO_0000010

128901860
type: Gene
SIO_000068: ncbigene

position:93408:1
position: 93408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:93998:1
position: 93998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:93408-93998:1:exon

LOC128901860
type: Variable Segment
subclass of: SO_0000466
RO_0002162: 75485
gene: LOC128901860
standard name: immunoglobulin heavy variable 3-23-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 962 Proteins
SIO_010081: LOC128901860
subclass of: SO_0000673
so part of: LOC128901860
location: 93408..93998
location: region:93408-93998:1
so has part: feature:93408-93998:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:93408-93998:1:exon

LOC128901860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: LOC128901860
exception: rearrangement required for product
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: immunoglobulin heavy variable 3-23-like
SIO_010081: LOC128901860
subclass of: SO_0000673
so part of: LOC128901860
location: 93496..93990
location: region:93496-93990:1
so has part: feature:93496-93990:1:exon

position:93496:1
position: 93496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:93990:1
position: 93990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:93496-93990:1:exon

LOC128901865
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: LOC128901865
note: immunoglobulin heavy variable 3-11-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 96054..97286
location: region:96054-97286:1
so has part: feature:96054-97286:1:exon
subclass of: SO_0000010

128901865
type: Gene
SIO_000068: ncbigene

position:96054:1
position: 96054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:97286:1
position: 97286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:96054-97286:1:exon

LOC128901865
type: Variable Segment
subclass of: SO_0000466
RO_0002162: 75485
gene: LOC128901865
standard name: immunoglobulin heavy variable 3-11-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 417 Proteins
SIO_010081: LOC128901865
subclass of: SO_0000673
so part of: LOC128901865
location: 96054..97286
location: region:96054-97286:1
so has part: feature:96054-97286:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:96054-97286:1:exon

LOC128901865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: LOC128901865
exception: rearrangement required for product
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: immunoglobulin heavy variable 3-11-like
SIO_010081: LOC128901865
subclass of: SO_0000673
so part of: LOC128901865
location: 96066..96575
location: region:96066-96575:1
so has part: feature:96066-96575:1:exon

position:96066:1
position: 96066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:96575:1
position: 96575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:96066-96575:1:exon

LOC128901852
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: LOC128901852
note: Ig heavy chain V region 914-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 98008..99627
location: region:98008-99627:1
so has part: feature:98008-99627:1:exon
subclass of: SO_0000010

128901852
type: Gene
SIO_000068: ncbigene

position:98008:1
position: 98008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:99627:1
position: 99627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:98008-99627:1:exon

LOC128901852
type: Variable Segment
subclass of: SO_0000466
RO_0002162: 75485
gene: LOC128901852
standard name: Ig heavy chain V region 914-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1074 Proteins
SIO_010081: LOC128901852
subclass of: SO_0000673
so part of: LOC128901852
location: 98008..99627
location: region:98008-99627:1
so has part: feature:98008-99627:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:98008-99627:1:exon

LOC128901852
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: LOC128901852
exception: rearrangement required for product
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: Ig heavy chain V region 914-like
SIO_010081: LOC128901852
subclass of: SO_0000673
so part of: LOC128901852
location: 98195..98680
location: region:98195-98680:1
so has part: feature:98195-98680:1:exon

position:98195:1
position: 98195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:98680:1
position: 98680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:98195-98680:1:exon

LOC128901854
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: LOC128901854
note: immunoglobulin heavy variable 3-23-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 99638..100085
location: region:99638-100085:1
so has part: feature:99638-100085:1:exon
subclass of: SO_0000010

128901854
type: Gene
SIO_000068: ncbigene

position:99638:1
position: 99638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:100085:1
position: 100085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:99638-100085:1:exon

LOC128901854
type: Variable Segment
subclass of: SO_0000466
RO_0002162: 75485
gene: LOC128901854
standard name: immunoglobulin heavy variable 3-23-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1082 Proteins
SIO_010081: LOC128901854
subclass of: SO_0000673
so part of: LOC128901854
location: 99638..100085
location: region:99638-100085:1
so has part: feature:99638-100085:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:99638-100085:1:exon

LOC128901854
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: LOC128901854
exception: rearrangement required for product
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: immunoglobulin heavy variable 3-23-like
SIO_010081: LOC128901854
subclass of: SO_0000673
so part of: LOC128901854
location: 99656..100084
location: region:99656-100084:1
so has part: feature:99656-100084:1:exon

position:99656:1
position: 99656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:100084:1
position: 100084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:99656-100084:1:exon

LOC128901853
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: LOC128901853
note: immunoglobulin heavy variable 3-23-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 100874..101795
location: region:100874-101795:1
so has part: feature:100874-101795:1:exon
subclass of: SO_0000010

128901853
type: Gene
SIO_000068: ncbigene

position:100874:1
position: 100874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:101795:1
position: 101795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:100874-101795:1:exon

LOC128901853
type: Variable Segment
subclass of: SO_0000466
RO_0002162: 75485
gene: LOC128901853
standard name: immunoglobulin heavy variable 3-23-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 399 Proteins
SIO_010081: LOC128901853
subclass of: SO_0000673
so part of: LOC128901853
location: 100874..101795
location: region:100874-101795:1
so has part: feature:100874-101795:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:100874-101795:1:exon

LOC128901853
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: LOC128901853
exception: rearrangement required for product
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: immunoglobulin heavy variable 3-23-like
SIO_010081: LOC128901853
subclass of: SO_0000673
so part of: LOC128901853
location: 100907..101359
location: region:100907-101359:1
so has part: feature:100907-101359:1:exon

position:100907:1
position: 100907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:101359:1
position: 101359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:100907-101359:1:exon

LOC128901850
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: LOC128901850
note: uncharacterized LOC128901850; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 101687..104546
location: region:101687-104546:1
so has part: feature:101687-104546:1:exon
subclass of: SO_0000010

128901850
type: Gene
SIO_000068: ncbigene

position:101687:1
position: 101687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:104546:1
position: 104546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:101687-104546:1:exon

LOC128901850
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 75485
gene: LOC128901850
product: uncharacterized LOC128901850
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 457 Proteins
transcript id: XM_054184017.1
SIO_010081: LOC128901850
subclass of: SO_0000673
so part of: LOC128901850
location: join(101687..102136,103184..104546)
location: region:101687-104546:1
so has part: feature:101687-102136:1:exon
so has part: feature:103184-104546:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:101687-102136:1:exon

position:102136:1
position: 102136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:103184-104546:1:exon

position:103184:1
position: 103184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC128901850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: LOC128901850
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC128901850
translation: MDWVRQAPGKGLEYVAGISSSGRYTGYASSVKGRFTISRDNSQSTVTLQMNSLRDDDTATYYCAKSSGGGCCAGLMAAVQLVESGGGQQTPGGSLTLRCKASGFTFSSVEMSWVRQAPGKGLEYVAYISSGGSTAYAPSVKGRFTISRDNSQSTLTLQMNSLRDDDTATYYCAKTSCGGCSYGGGTFPDTVSQRPCVGSPHRPILPQTSTIFAPNLNHYHQTLTDFSPDLRGLTQLLTIRPKSRPFYPQLSNDWHQTSNICAPNLHPSSPKLSMLSTNISTTFAPNLDHLPQTSRAFVPNIVRLPLISTICPKSQPFA
SIO_010081: LOC128901850
subclass of: SO_0000673
so part of: LOC128901850
location: join(101917..102136,103184..103920)
location: region:101917-103920:1
so has part: feature:101917-102136:1:exon
so has part: feature:103184-103920:1:exon

XP_054039992.1
type: Protein
SIO_000068: ncbiprotein

position:101917:1
position: 101917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:103920:1
position: 103920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:101917-102136:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:103184-103920:1:exon

LOC128901856
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: LOC128901856
note: immunoglobulin heavy variable 3-64D-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 104605..105814
location: region:104605-105814:1
so has part: feature:104605-105814:1:exon
subclass of: SO_0000010

128901856
type: Gene
SIO_000068: ncbigene

position:104605:1
position: 104605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:105814:1
position: 105814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:104605-105814:1:exon

LOC128901856
type: Variable Segment
subclass of: SO_0000466
RO_0002162: 75485
gene: LOC128901856
standard name: immunoglobulin heavy variable 3-64D-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 998 Proteins
SIO_010081: LOC128901856
subclass of: SO_0000673
so part of: LOC128901856
location: join(104605..104641,104745..105814)
location: region:104605-105814:1
so has part: feature:104605-104641:1:exon
so has part: feature:104745-105814:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:104605-104641:1:exon

position:104641:1
position: 104641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:104745-105814:1:exon

position:104745:1
position: 104745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC128901856
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: LOC128901856
exception: rearrangement required for product
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: immunoglobulin heavy variable 3-64D-like
SIO_010081: LOC128901856
subclass of: SO_0000673
so part of: LOC128901856
location: 104750..105256
location: region:104750-105256:1
so has part: feature:104750-105256:1:exon

position:104750:1
position: 104750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:105256:1
position: 105256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:104750-105256:1:exon

LOC128901851
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: LOC128901851
note: Ig heavy chain Mem5-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 105693..108814
location: region:105693-108814:1
so has part: feature:105693-108814:1:exon
subclass of: SO_0000010

128901851
type: Gene
SIO_000068: ncbigene

position:105693:1
position: 105693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:108814:1
position: 108814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:105693-108814:1:exon

LOC128901851
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 75485
gene: LOC128901851
product: Ig heavy chain Mem5-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 425 Proteins
transcript id: XM_054184018.1
SIO_010081: LOC128901851
subclass of: SO_0000673
so part of: LOC128901851
location: 105693..108814
location: region:105693-108814:1
so has part: feature:105693-108814:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:105693-108814:1:exon

LOC128901851
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: LOC128901851
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: Ig heavy chain Mem5-like
translation: MAAVQLVESGGGQQTPGGSLTLRCKGSGFTFSNVEMSWVRQAPGKGLEFVAAIRNDGSFTNYAPSVKGRFTISRDNSQSTLTLQMNSLRDDDTATYYCAKRNGGGCYYGGGTSPGTVSPRPAISLKPLHKDPGLGASPGSRTDHKTLYPPQSLGFWPKSLPSPSSAGALAPSPAAPPWTGGNSPPLLAKTFTVYPKPDHFCPKPRGLLSQISFACPNLNRLPQTPTICPNTLMVLPEILTVCPKP
SIO_010081: LOC128901851
subclass of: SO_0000673
so part of: LOC128901851
location: 106049..106786
location: region:106049-106786:1
so has part: feature:106049-106786:1:exon

XP_054039993.1
type: Protein
SIO_000068: ncbiprotein

position:106049:1
position: 106049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:106786:1
position: 106786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:106049-106786:1:exon

LOC128901870
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: LOC128901870
note: heterogeneous nuclear ribonucleoprotein C-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 118741..125591
location: region:118741-125591:1
so has part: feature:118741-125591:1:exon
subclass of: SO_0000010

128901870
type: Gene
SIO_000068: ncbigene

position:118741:1
position: 118741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:125591:1
position: 125591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:118741-125591:1:exon

LOC128901870
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 75485
gene: LOC128901870
product: heterogeneous nuclear ribonucleoprotein C-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
transcript id: XM_054184024.1
SIO_010081: LOC128901870
subclass of: SO_0000673
so part of: LOC128901870
location: join(118741..119041,121465..121540,121717..121764,123067..123227,123334..123435,124606..124763,125423..125591)
location: region:118741-125591:1
so has part: feature:118741-119041:1:exon
so has part: feature:121465-121540:1:exon
so has part: feature:121717-121764:1:exon
so has part: feature:123067-123227:1:exon
so has part: feature:123334-123435:1:exon
so has part: feature:124606-124763:1:exon
so has part: feature:125423-125591:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:118741-119041:1:exon

position:119041:1
position: 119041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:121465-121540:1:exon

position:121465:1
position: 121465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:121540:1
position: 121540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:121717-121764:1:exon

position:121717:1
position: 121717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:121764:1
position: 121764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:123067-123227:1:exon

position:123067:1
position: 123067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:123227:1
position: 123227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:123334-123435:1:exon

position:123334:1
position: 123334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:123435:1
position: 123435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:124606-124763:1:exon

position:124606:1
position: 124606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:124763:1
position: 124763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:125423-125591:1:exon

position:125423:1
position: 125423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC128901870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: LOC128901870
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein C-like
translation: MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSSKSGKLKGDDLQSIKKELGQIKQKVDALLESLEKIEKEQKQKGEKAEEELGGGSAKKEEGGGGAKAEAGGEDSAEEGDLLDDEEAEERGDDQLESLKGDEKEAEEGEDDRDSANGEDDP
SIO_010081: LOC128901870
subclass of: SO_0000673
so part of: LOC128901870
location: join(118799..119041,121465..121540,121717..121764,123067..123227,123334..123435,124606..124763,125423..125506)
location: region:118799-125506:1
so has part: feature:118799-119041:1:exon
so has part: feature:121465-121540:1:exon
so has part: feature:121717-121764:1:exon
so has part: feature:123067-123227:1:exon
so has part: feature:123334-123435:1:exon
so has part: feature:124606-124763:1:exon
so has part: feature:125423-125506:1:exon

XP_054039999.1
type: Protein
SIO_000068: ncbiprotein

position:118799:1
position: 118799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:125506:1
position: 125506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:118799-119041:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:121465-121540:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:121717-121764:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:123067-123227:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:123334-123435:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:124606-124763:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:125423-125506:1:exon

TTC5
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: TTC5
note: tetratricopeptide repeat domain 5; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(126623..134572)
location: region:126623-134572:-1
so has part: feature:126623-134572:-1:exon
subclass of: SO_0000010

128901874
type: Gene
SIO_000068: ncbigene

position:126623:-1
position: 126623
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:134572:-1
position: 134572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:126623-134572:-1:exon

TTC5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 75485
gene: TTC5
product: tetratricopeptide repeat domain 5
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
transcript id: XM_054184027.1
SIO_010081: TTC5
subclass of: SO_0000673
so part of: TTC5
location: complement(join(126623..126990,127032..127251,128219..128364,129210..129433,130104..130250,130617..130673,131440..131531,132037..132171,133074..133285,134378..134572))
location: region:126623-134572:-1
so has part: feature:134378-134572:-1:exon
so has part: feature:133074-133285:-1:exon
so has part: feature:132037-132171:-1:exon
so has part: feature:131440-131531:-1:exon
so has part: feature:130617-130673:-1:exon
so has part: feature:130104-130250:-1:exon
so has part: feature:129210-129433:-1:exon
so has part: feature:128219-128364:-1:exon
so has part: feature:127032-127251:-1:exon
so has part: feature:126623-126990:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:134378-134572:-1:exon

position:134378:-1
position: 134378
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:133074-133285:-1:exon

position:133074:-1
position: 133074
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:133285:-1
position: 133285
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:132037-132171:-1:exon

position:132037:-1
position: 132037
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:132171:-1
position: 132171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:131440-131531:-1:exon

position:131440:-1
position: 131440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:131531:-1
position: 131531
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:130617-130673:-1:exon

position:130617:-1
position: 130617
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:130673:-1
position: 130673
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:130104-130250:-1:exon

position:130104:-1
position: 130104
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:130250:-1
position: 130250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:129210-129433:-1:exon

position:129210:-1
position: 129210
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:129433:-1
position: 129433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:128219-128364:-1:exon

position:128219:-1
position: 128219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:128364:-1
position: 128364
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:127032-127251:-1:exon

position:127032:-1
position: 127032
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:127251:-1
position: 127251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:126623-126990:-1:exon

position:126990:-1
position: 126990
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TTC5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: TTC5
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: tetratricopeptide repeat protein 5
translation: MEETLRRMEAVQVSPAGRGRALVLVGRALGVCPTAWGRAEEALSRALKLEPGLGRAWIQLGELKWRRGDLEGARACFGGALQHGEEAEGRRLLSMALAGGGRGGGXLRESLAQAEAAVRCDPTDGRSWYVLGNAYVSLFFAGGQSPDAARRALGAYAQAERVDPAAANNPDLHLNRATLLQYQERFGAALEGLGRAAALSPGWAEPRRRQSQLLRFLGALCGLLANGGNLRGKRRRGLSGPLPPSLLGPLGGVAEAGGGVAQGGVSPLRPSPIPALRPGPNPHRVLLGRVLFTLVPPGGVPYAVGLRDGGGAVAAVTVYNAAPAWGLAVGDALALPEPLLRHHQLCHQGQTFSFTGIRVASPLSLVVNGRRVPPSALAPPRLALLNDPGPANEQPPPGPR
SIO_010081: TTC5
subclass of: SO_0000673
so part of: TTC5
location: complement(join(127098..127251,128219..128364,129210..129433,130104..130250,130617..130673,131440..131531,132037..132171,133074..133285,134378..134414))
location: region:127098-134414:-1
so has part: feature:134378-134414:-1:exon
so has part: feature:133074-133285:-1:exon
so has part: feature:132037-132171:-1:exon
so has part: feature:131440-131531:-1:exon
so has part: feature:130617-130673:-1:exon
so has part: feature:130104-130250:-1:exon
so has part: feature:129210-129433:-1:exon
so has part: feature:128219-128364:-1:exon
so has part: feature:127098-127251:-1:exon

XP_054040002.1
type: Protein
SIO_000068: ncbiprotein

position:127098:-1
position: 127098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:134414:-1
position: 134414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:134378-134414:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:133074-133285:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:132037-132171:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:131440-131531:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:130617-130673:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:130104-130250:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:129210-129433:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:128219-128364:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:127098-127251:-1:exon

OSGEP
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: OSGEP
note: O-sialoglycoprotein endopeptidase; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(136898..145379)
location: region:136898-145379:-1
so has part: feature:136898-145379:-1:exon
subclass of: SO_0000010

128901875
type: Gene
SIO_000068: ncbigene

position:136898:-1
position: 136898
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:145379:-1
position: 145379
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:136898-145379:-1:exon

OSGEP
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 75485
gene: OSGEP
product: O-sialoglycoprotein endopeptidase
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
transcript id: XM_054184028.1
SIO_010081: OSGEP
subclass of: SO_0000673
so part of: OSGEP
location: complement(join(136898..136959,137549..137647,137996..138071,138916..139006,140423..140488,140575..140653,141435..141484,142551..142646,143406..143581,144304..144423,145135..145379))
location: region:136898-145379:-1
so has part: feature:145135-145379:-1:exon
so has part: feature:144304-144423:-1:exon
so has part: feature:143406-143581:-1:exon
so has part: feature:142551-142646:-1:exon
so has part: feature:141435-141484:-1:exon
so has part: feature:140575-140653:-1:exon
so has part: feature:140423-140488:-1:exon
so has part: feature:138916-139006:-1:exon
so has part: feature:137996-138071:-1:exon
so has part: feature:137549-137647:-1:exon
so has part: feature:136898-136959:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:145135-145379:-1:exon

position:145135:-1
position: 145135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:144304-144423:-1:exon

position:144304:-1
position: 144304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:144423:-1
position: 144423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:143406-143581:-1:exon

position:143406:-1
position: 143406
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:143581:-1
position: 143581
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:142551-142646:-1:exon

position:142551:-1
position: 142551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:142646:-1
position: 142646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:141435-141484:-1:exon

position:141435:-1
position: 141435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:141484:-1
position: 141484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:140575-140653:-1:exon

position:140575:-1
position: 140575
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:140653:-1
position: 140653
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:140423-140488:-1:exon

position:140423:-1
position: 140423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:140488:-1
position: 140488
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:138916-139006:-1:exon

position:138916:-1
position: 138916
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:139006:-1
position: 139006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:137996-138071:-1:exon

position:137996:-1
position: 137996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:138071:-1
position: 138071
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:137549-137647:-1:exon

position:137549:-1
position: 137549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:137647:-1
position: 137647
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:136898-136959:-1:exon

position:136959:-1
position: 136959
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

OSGEP
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: OSGEP
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tRNA N6-adenosine threonylcarbamoyltransferase
translation: MPTVLGLEGSANKVGAGVVRDGVILSNRRATYVTPPGTGFAPGPTARHHRGAVLGLVGGALADARLRPRDIDAVAFTRGPGMGAPLAVVAAVARTLAQLWGRPLLGVNHCLGHIEMGRLLARAPDPLVLYVSGGNTQVLAFCRGRYRILGETLDLALGNCLDRLARLLQIPNDPSPGYNIEQLAKGGQRLVDLPYVVKGMDVSFSGLLSHLQAITPKLLASGEATREDLCFSLQETTFAMLAEVSERALALTRAPQLLLVGGVACNRRLQEMLQTMCSARGAQLCPTDERYCVDNGAMIAQAGWEMLRAGQVTELDQSGITQRYRTDEVEVTWRD
SIO_010081: OSGEP
subclass of: SO_0000673
so part of: OSGEP
location: complement(join(136920..136959,137549..137647,137996..138071,138916..139006,140423..140488,140575..140653,141435..141484,142551..142646,143406..143581,144304..144423,145135..145249))
location: region:136920-145249:-1
so has part: feature:145135-145249:-1:exon
so has part: feature:144304-144423:-1:exon
so has part: feature:143406-143581:-1:exon
so has part: feature:142551-142646:-1:exon
so has part: feature:141435-141484:-1:exon
so has part: feature:140575-140653:-1:exon
so has part: feature:140423-140488:-1:exon
so has part: feature:138916-139006:-1:exon
so has part: feature:137996-138071:-1:exon
so has part: feature:137549-137647:-1:exon
so has part: feature:136920-136959:-1:exon

XP_054040003.1
type: Protein
SIO_000068: ncbiprotein

position:136920:-1
position: 136920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:145249:-1
position: 145249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:145135-145249:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:144304-144423:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:143406-143581:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:142551-142646:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:141435-141484:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:140575-140653:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:140423-140488:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:138916-139006:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:137996-138071:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:137549-137647:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:136920-136959:-1:exon

APEX1
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: APEX1
note: apurinic/apyrimidinic endodeoxyribonuclease 1; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 145435..153600
location: region:145435-153600:1
so has part: feature:145435-153600:1:exon
subclass of: SO_0000010

128901866
type: Gene
SIO_000068: ncbigene

position:145435:1
position: 145435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:153600:1
position: 153600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:145435-153600:1:exon

APEX1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 75485
gene: APEX1
product: apurinic/apyrimidinic endodeoxyribonuclease 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
transcript id: XM_054184022.1
SIO_010081: APEX1
subclass of: SO_0000673
so part of: APEX1
location: join(145435..145542,146278..146351,148349..148503,149901..150093,151702..153600)
location: region:145435-153600:1
so has part: feature:145435-145542:1:exon
so has part: feature:146278-146351:1:exon
so has part: feature:148349-148503:1:exon
so has part: feature:149901-150093:1:exon
so has part: feature:151702-153600:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:145435-145542:1:exon

position:145542:1
position: 145542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:146278-146351:1:exon

position:146278:1
position: 146278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:146351:1
position: 146351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:148349-148503:1:exon

position:148349:1
position: 148349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:148503:1
position: 148503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:149901-150093:1:exon

position:149901:1
position: 149901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:150093:1
position: 150093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:151702-153600:1:exon

position:151702:1
position: 151702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

APEX1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 75485
gene: APEX1
product: apurinic/apyrimidinic endodeoxyribonuclease 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
transcript id: XM_054184021.1
SIO_010081: APEX1
subclass of: SO_0000673
so part of: APEX1
location: join(145442..145542,146087..146107,146256..146351,148349..148503,149901..150093,151702..153600)
location: region:145442-153600:1
so has part: feature:145442-145542:1:exon
so has part: feature:146087-146107:1:exon
so has part: feature:146256-146351:1:exon
so has part: feature:148349-148503:1:exon
so has part: feature:149901-150093:1:exon
so has part: feature:151702-153600:1:exon

position:145442:1
position: 145442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:145442-145542:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:146087-146107:1:exon

position:146087:1
position: 146087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:146107:1
position: 146107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:146256-146351:1:exon

position:146256:1
position: 146256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:148349-148503:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:149901-150093:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:151702-153600:1:exon

APEX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: APEX1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: DNA-(apurinic or apyrimidinic site) endonuclease
translation: MPKRSKKEAAEGDGGEETGGGPAKRGVAGEGQYEDPPTREAAPGGQRFTLKVTSWNVDGLRAWVRKGGLQWVQEEAPDVLCLQETKCVGPAVPPEVRALPGLPHQFWASPEGRPGYSGVGLLARHEPLSVTYGIGEEEHDREGRVVTAEFPALYVVAAYVPNSGRGLVRLDYRRRWDAAFRGYLARLDARKPVALCGDLNVAHQELDLRHPRANRRSAGFTAEEREGFGALLEAGFLDSFRHLYPALPHAYTFWTYLGGARQRNVGWRLDYFVLSRRLAPALCDSKIRSRVLGSDHCPITLLLAL
SIO_010081: APEX1
subclass of: SO_0000673
so part of: APEX1
location: join(146297..146351,148349..148503,149901..150093,151702..152216)
location: region:146297-152216:1
so has part: feature:146297-146351:1:exon
so has part: feature:148349-148503:1:exon
so has part: feature:149901-150093:1:exon
so has part: feature:151702-152216:1:exon

XP_054039996.1
type: Protein
SIO_000068: ncbiprotein

position:146297:1
position: 146297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:152216:1
position: 152216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:146297-146351:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:148349-148503:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:149901-150093:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:151702-152216:1:exon

APEX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: APEX1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: DNA-(apurinic or apyrimidinic site) endonuclease
translation: MPKRSKKEAAEGDGGEETGGGPAKRGVAGEGQYEDPPTREAAPGGQRFTLKVTSWNVDGLRAWVRKGGLQWVQEEAPDVLCLQETKCVGPAVPPEVRALPGLPHQFWASPEGRPGYSGVGLLARHEPLSVTYGIGEEEHDREGRVVTAEFPALYVVAAYVPNSGRGLVRLDYRRRWDAAFRGYLARLDARKPVALCGDLNVAHQELDLRHPRANRRSAGFTAEEREGFGALLEAGFLDSFRHLYPALPHAYTFWTYLGGARQRNVGWRLDYFVLSRRLAPALCDSKIRSRVLGSDHCPITLLLAL
SIO_010081: APEX1
subclass of: SO_0000673
so part of: APEX1
location: join(146297..146351,148349..148503,149901..150093,151702..152216)
location: region:146297-152216:1
so has part: feature:146297-146351:1:exon
so has part: feature:148349-148503:1:exon
so has part: feature:149901-150093:1:exon
so has part: feature:151702-152216:1:exon

XP_054039997.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:146297-146351:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:148349-148503:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:149901-150093:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:151702-152216:1:exon

PIP4P1
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: PIP4P1
note: phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(155292..158805)
location: region:155292-158805:-1
so has part: feature:155292-158805:-1:exon
subclass of: SO_0000010

128901846
type: Gene
SIO_000068: ncbigene

position:155292:-1
position: 155292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:158805:-1
position: 158805
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:155292-158805:-1:exon

PIP4P1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 75485
gene: PIP4P1
product: phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transcript id: XM_054184012.1
SIO_010081: PIP4P1
subclass of: SO_0000673
so part of: PIP4P1
location: complement(join(155292..155435,155911..156001,156117..156169,156735..156841,157672..157778,158142..158326,158727..158805))
location: region:155292-158805:-1
so has part: feature:158727-158805:-1:exon
so has part: feature:158142-158326:-1:exon
so has part: feature:157672-157778:-1:exon
so has part: feature:156735-156841:-1:exon
so has part: feature:156117-156169:-1:exon
so has part: feature:155911-156001:-1:exon
so has part: feature:155292-155435:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:158727-158805:-1:exon

position:158727:-1
position: 158727
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:158142-158326:-1:exon

position:158142:-1
position: 158142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:158326:-1
position: 158326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:157672-157778:-1:exon

position:157672:-1
position: 157672
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:157778:-1
position: 157778
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:156735-156841:-1:exon

position:156735:-1
position: 156735
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:156841:-1
position: 156841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:156117-156169:-1:exon

position:156117:-1
position: 156117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:156169:-1
position: 156169
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:155911-156001:-1:exon

position:155911:-1
position: 155911
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:156001:-1
position: 156001
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:155292-155435:-1:exon

position:155435:-1
position: 155435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PIP4P1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: PIP4P1
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: type 1 phosphatidylinositol 4,5-bisphosphate 4-phosphatase
translation: MADGERSPLLPAEAGPGPGAGGGPGGGAAGAGPGAVLPGEAPPPYSPLGSPEGGAGPAVTCRVCQRPISVEGKTHQHVVKCGGCGEATPIRTAPGGKKYVRCPCNCLLVCKASSQRIACPRPYCKRIINLGPVQGGAPSPDPPPGGVRVACGHCGGPFLWAELTDRALARCPHCRKVSAIGRRFPRRRCLCCLLLALLIGGAAAGLAVGTWGVARGGGALWAGGAVLGAGAGACLLRAAYWGCLRVSLPLPHRP
SIO_010081: PIP4P1
subclass of: SO_0000673
so part of: PIP4P1
location: complement(join(155292..155435,155911..156001,156117..156169,156735..156841,157672..157778,158142..158326,158727..158805))
location: region:155292-158805:-1
so has part: feature:158727-158805:-1:exon
so has part: feature:158142-158326:-1:exon
so has part: feature:157672-157778:-1:exon
so has part: feature:156735-156841:-1:exon
so has part: feature:156117-156169:-1:exon
so has part: feature:155911-156001:-1:exon
so has part: feature:155292-155435:-1:exon

XP_054039987.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:158727-158805:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:158142-158326:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:157672-157778:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:156735-156841:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:156117-156169:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:155911-156001:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:155292-155435:-1:exon

IPO4
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: IPO4
note: importin 4; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(163197..163887)
location: region:163197-163887:-1
so has part: feature:163197-163887:-1:exon
subclass of: SO_0000010

128901847
type: Gene
SIO_000068: ncbigene

position:163197:-1
position: 163197
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:163887:-1
position: 163887
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:163197-163887:-1:exon

IPO4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 75485
gene: IPO4
product: importin 4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XM_054184013.1
SIO_010081: IPO4
subclass of: SO_0000673
so part of: IPO4
location: complement(join(163197..163242,163338..163417,163533..163619,163726..163887))
location: region:163197-163887:-1
so has part: feature:163726-163887:-1:exon
so has part: feature:163533-163619:-1:exon
so has part: feature:163338-163417:-1:exon
so has part: feature:163197-163242:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:163726-163887:-1:exon

position:163726:-1
position: 163726
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:163533-163619:-1:exon

position:163533:-1
position: 163533
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:163619:-1
position: 163619
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:163338-163417:-1:exon

position:163338:-1
position: 163338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:163417:-1
position: 163417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:163197-163242:-1:exon

position:163242:-1
position: 163242
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

IPO4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: IPO4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: importin-4
translation: MAAPDLERLLAALLEPDSAVIRRATASLREAFADPQTPARLGLLLTAAPQPQVRQLAAVLLRRRLLGKWRGLEPDLRLRLPAMVAEALEQEPE
SIO_010081: IPO4
subclass of: SO_0000673
so part of: IPO4
location: complement(join(163197..163242,163338..163417,163533..163619,163726..163794))
location: region:163197-163794:-1
so has part: feature:163726-163794:-1:exon
so has part: feature:163533-163619:-1:exon
so has part: feature:163338-163417:-1:exon
so has part: feature:163197-163242:-1:exon

XP_054039988.1
type: Protein
SIO_000068: ncbiprotein

position:163794:-1
position: 163794
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:163726-163794:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:163533-163619:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:163338-163417:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:163197-163242:-1:exon

NEDD8
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: NEDD8
note: NEDD8 ubiquitin like modifier; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(164354..165710)
location: region:164354-165710:-1
so has part: feature:164354-165710:-1:exon
subclass of: SO_0000010

128901867
type: Gene
SIO_000068: ncbigene

position:164354:-1
position: 164354
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:165710:-1
position: 165710
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:164354-165710:-1:exon

NEDD8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 75485
gene: NEDD8
product: NEDD8 ubiquitin like modifier
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins
transcript id: XM_054184023.1
SIO_010081: NEDD8
subclass of: SO_0000673
so part of: NEDD8
location: complement(join(164354..164547,164908..164990,165458..165505,165638..165710))
location: region:164354-165710:-1
so has part: feature:165638-165710:-1:exon
so has part: feature:165458-165505:-1:exon
so has part: feature:164908-164990:-1:exon
so has part: feature:164354-164547:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:165638-165710:-1:exon

position:165638:-1
position: 165638
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:165458-165505:-1:exon

position:165458:-1
position: 165458
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:165505:-1
position: 165505
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:164908-164990:-1:exon

position:164908:-1
position: 164908
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:164990:-1
position: 164990
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:164354-164547:-1:exon

position:164547:-1
position: 164547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

NEDD8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: NEDD8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: NEDD8
translation: MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIQGGSVLHLVLALRGGGAPR
SIO_010081: NEDD8
subclass of: SO_0000673
so part of: NEDD8
location: complement(join(164454..164547,164908..164990,165458..165505,165638..165655))
location: region:164454-165655:-1
so has part: feature:165638-165655:-1:exon
so has part: feature:165458-165505:-1:exon
so has part: feature:164908-164990:-1:exon
so has part: feature:164454-164547:-1:exon

XP_054039998.1
type: Protein
SIO_000068: ncbiprotein

position:164454:-1
position: 164454
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:165655:-1
position: 165655
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:165638-165655:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:165458-165505:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:164908-164990:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:164454-164547:-1:exon

TINF2
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: TINF2
note: TERF1 interacting nuclear factor 2; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(166145..171409)
location: region:166145-171409:-1
so has part: feature:166145-171409:-1:exon
subclass of: SO_0000010

128901848
type: Gene
SIO_000068: ncbigene

position:166145:-1
position: 166145
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:171409:-1
position: 171409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:166145-171409:-1:exon

TINF2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 75485
gene: TINF2
product: TERF1 interacting nuclear factor 2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XM_054184015.1
SIO_010081: TINF2
subclass of: SO_0000673
so part of: TINF2
location: complement(join(166145..166198,166484..166539,166639..166694,167272..167384,169234..169335,169426..169533,170194..170365,171369..171409))
location: region:166145-171409:-1
so has part: feature:171369-171409:-1:exon
so has part: feature:170194-170365:-1:exon
so has part: feature:169426-169533:-1:exon
so has part: feature:169234-169335:-1:exon
so has part: feature:167272-167384:-1:exon
so has part: feature:166639-166694:-1:exon
so has part: feature:166484-166539:-1:exon
so has part: feature:166145-166198:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:171369-171409:-1:exon

position:171369:-1
position: 171369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:170194-170365:-1:exon

position:170194:-1
position: 170194
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:170365:-1
position: 170365
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:169426-169533:-1:exon

position:169426:-1
position: 169426
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:169533:-1
position: 169533
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:169234-169335:-1:exon

position:169234:-1
position: 169234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:169335:-1
position: 169335
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:167272-167384:-1:exon

position:167272:-1
position: 167272
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:167384:-1
position: 167384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:166639-166694:-1:exon

position:166639:-1
position: 166639
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:166694:-1
position: 166694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:166484-166539:-1:exon

position:166484:-1
position: 166484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:166539:-1
position: 166539
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:166145-166198:-1:exon

position:166198:-1
position: 166198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TINF2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: TINF2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: TERF1-interacting nuclear factor 2
translation: MAGKDVSPAVALRLSMAAAWRVVRGRSPARFPRVLALLEAVGRAAPGALHFRHAARLRLGLQAAVVVHMLQEARPAGKILDAIDTFFPEEEAAGGGHGPASPRDLAMVGEAQESFREMVLGLLADPRRRDAYLQGPVREEYGEPFLEALERLFHECLERLESALPPPPTCARLRPRPGFRRLLPLRAPPFEFVDDVISDAEDDAFPRRKIRALPRSRRALPRPPLG
SIO_010081: TINF2
subclass of: SO_0000673
so part of: TINF2
location: complement(join(166145..166198,166484..166539,166639..166694,167272..167384,169234..169335,169426..169533,170194..170365,171369..171388))
location: region:166145-171388:-1
so has part: feature:171369-171388:-1:exon
so has part: feature:170194-170365:-1:exon
so has part: feature:169426-169533:-1:exon
so has part: feature:169234-169335:-1:exon
so has part: feature:167272-167384:-1:exon
so has part: feature:166639-166694:-1:exon
so has part: feature:166484-166539:-1:exon
so has part: feature:166145-166198:-1:exon

XP_054039990.1
type: Protein
SIO_000068: ncbiprotein

position:171388:-1
position: 171388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:171369-171388:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:170194-170365:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:169426-169533:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:169234-169335:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:167272-167384:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:166639-166694:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:166484-166539:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:166145-166198:-1:exon

TGM1
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: TGM1
note: transglutaminase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(171498..190287)
location: region:171498-190287:-1
so has part: feature:171498-190287:-1:exon
subclass of: SO_0000010

128901849
type: Gene
SIO_000068: ncbigene

position:171498:-1
position: 171498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:190287:-1
position: 190287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:171498-190287:-1:exon

TGM1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 75485
gene: TGM1
product: transglutaminase 1
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; deleted 5 bases in 5 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
transcript id: XM_054184016.1
SIO_010081: TGM1
subclass of: SO_0000673
so part of: TGM1
location: complement(join(171498..171632,172510..172737,173642..173778,176725..176885,176982..177263,178627..178780,178875..178963,180393..180496,180724..180853,181569..181749,182499..182615,183802..183898,184927..185194,185447..185627,186603..186836,189563..189676,190272..190287))
location: region:171498-190287:-1
so has part: feature:190272-190287:-1:exon
so has part: feature:189563-189676:-1:exon
so has part: feature:186603-186836:-1:exon
so has part: feature:185447-185627:-1:exon
so has part: feature:184927-185194:-1:exon
so has part: feature:183802-183898:-1:exon
so has part: feature:182499-182615:-1:exon
so has part: feature:181569-181749:-1:exon
so has part: feature:180724-180853:-1:exon
so has part: feature:180393-180496:-1:exon
so has part: feature:178875-178963:-1:exon
so has part: feature:178627-178780:-1:exon
so has part: feature:176982-177263:-1:exon
so has part: feature:176725-176885:-1:exon
so has part: feature:173642-173778:-1:exon
so has part: feature:172510-172737:-1:exon
so has part: feature:171498-171632:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:190272-190287:-1:exon

position:190272:-1
position: 190272
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:189563-189676:-1:exon

position:189563:-1
position: 189563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:189676:-1
position: 189676
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:186603-186836:-1:exon

position:186603:-1
position: 186603
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:186836:-1
position: 186836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:185447-185627:-1:exon

position:185447:-1
position: 185447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:185627:-1
position: 185627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:184927-185194:-1:exon

position:184927:-1
position: 184927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:185194:-1
position: 185194
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:183802-183898:-1:exon

position:183802:-1
position: 183802
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:183898:-1
position: 183898
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:182499-182615:-1:exon

position:182499:-1
position: 182499
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:182615:-1
position: 182615
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:181569-181749:-1:exon

position:181569:-1
position: 181569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:181749:-1
position: 181749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:180724-180853:-1:exon

position:180724:-1
position: 180724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:180853:-1
position: 180853
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:180393-180496:-1:exon

position:180393:-1
position: 180393
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:180496:-1
position: 180496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:178875-178963:-1:exon

position:178875:-1
position: 178875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:178963:-1
position: 178963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:178627-178780:-1:exon

position:178627:-1
position: 178627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:178780:-1
position: 178780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:176982-177263:-1:exon

position:176982:-1
position: 176982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:177263:-1
position: 177263
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:176725-176885:-1:exon

position:176725:-1
position: 176725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:176885:-1
position: 176885
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:173642-173778:-1:exon

position:173642:-1
position: 173642
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:173778:-1
position: 173778
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:172510-172737:-1:exon

position:172510:-1
position: 172510
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:172737:-1
position: 172737
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:171498-171632:-1:exon

position:171632:-1
position: 171632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TGM1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: TGM1
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; deleted 5 bases in 5 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: protein-glutamine gamma-glutamyltransferase K
translation: MPLPYRGVVCFGPAPSSQGHAPFPWSTPPPGSAGHWEHWELLGGDAGRRPPPGPGPLGGRQLPGAGGGTPKPPPPAPAGASGAAWAAAAAAAAAAAAATRTGSPPPGRVPGRRPPQPLRPVGLLAPRGLVVCSPADRVAHHTADFQAPRPVLRRGQPFGLRVLLPRPFDPDDDALCVELTLGPNPQVAKGTHVLIPLGETSATGWTAEVEEGEGAEPPAGPALSLRVAAPPDAPIGRYCLSVKTRTGAGEFAAPFDDANDFFLLFNPWCPDDHVYMEKTSDLNEYVLNETGRIFXERSWNYGQFDAGVLEACLYILDRRGMPHSARGDPVMVSRVVSRHGASVNSLDDNGVLVGNWTGDYGQGTNPSAWAGSVAILRAFHRTGPVRYGQCWVFAGVMTTGTGCLGLPTRTVTNYNSAHDTDVSLTTDIYFDENMRPLERLNTDSVWNFHVWNDCWMKRPDLPEGYDGWQVVDATPQETSSGLFCCGPCSVTAVKNGEVFLKYDTPFVFAEVNSDKVYWQRQAGGAFAVVHVEEGAIGRRISTLGAGSGARLDITHQYKHPEGSEEERRAVSTATSHGSRPRPGGSPSSGEVTVRVGAGPAVAGAELEFRAAVGNGGAEPRTLRLRLALGAVRYTGVASAPFRQEQHRRVVPPGQEETVTMTVAYEEYGPHVGEQDALKLTAAGVVEETGQVVAKELRVRLHTPELTLTLLAPAVVGQEVPVQVVFQNPLPEALSGATLRMEGAGLSCPKPFSLGSVGAGQTVRLRQPVVPLRAGRRRLVAALESPRLGPLHGSLQFDAAPAEAAPSGGSPPRRPRRARRRAAPPXRQHRGGAKKEGGGGGERRHRKWRHEGARGGQWGRAAGCGAGSQARACAR
SIO_010081: TGM1
subclass of: SO_0000673
so part of: TGM1
location: complement(join(171498..171632,172510..172737,173642..173778,176725..176885,176982..177263,178627..178780,178875..178963,180393..180496,180724..180853,181569..181749,182499..182615,183802..183898,184927..185194,185447..185627,186603..186836,189563..189676,190272..190287))
location: region:171498-190287:-1
so has part: feature:190272-190287:-1:exon
so has part: feature:189563-189676:-1:exon
so has part: feature:186603-186836:-1:exon
so has part: feature:185447-185627:-1:exon
so has part: feature:184927-185194:-1:exon
so has part: feature:183802-183898:-1:exon
so has part: feature:182499-182615:-1:exon
so has part: feature:181569-181749:-1:exon
so has part: feature:180724-180853:-1:exon
so has part: feature:180393-180496:-1:exon
so has part: feature:178875-178963:-1:exon
so has part: feature:178627-178780:-1:exon
so has part: feature:176982-177263:-1:exon
so has part: feature:176725-176885:-1:exon
so has part: feature:173642-173778:-1:exon
so has part: feature:172510-172737:-1:exon
so has part: feature:171498-171632:-1:exon

XP_054039991.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:190272-190287:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:189563-189676:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:186603-186836:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:185447-185627:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:184927-185194:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:183802-183898:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:182499-182615:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:181569-181749:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:180724-180853:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:180393-180496:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:178875-178963:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:178627-178780:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:176982-177263:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:176725-176885:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:173642-173778:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:172510-172737:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:171498-171632:-1:exon

LOC128901868
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: LOC128901868
note: uncharacterized LOC128901868; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(194806..198102)
location: region:194806-198102:-1
so has part: feature:194806-198102:-1:exon
subclass of: SO_0000011

128901868
type: Gene
SIO_000068: ncbigene

position:194806:-1
position: 194806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:198102:-1
position: 198102
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:194806-198102:-1:exon

LOC128901868
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 75485
nc RNA class: lncRNA
gene: LOC128901868
product: uncharacterized LOC128901868
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XR_008463542.1
SIO_010081: LOC128901868
subclass of: SO_0000673
so part of: LOC128901868
location: complement(join(194806..194935,195991..196116,196291..196393,197846..197896,198039..198102))
location: region:194806-198102:-1
so has part: feature:198039-198102:-1:exon
so has part: feature:197846-197896:-1:exon
so has part: feature:196291-196393:-1:exon
so has part: feature:195991-196116:-1:exon
so has part: feature:194806-194935:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:198039-198102:-1:exon

position:198039:-1
position: 198039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:197846-197896:-1:exon

position:197846:-1
position: 197846
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:197896:-1
position: 197896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:196291-196393:-1:exon

position:196291:-1
position: 196291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:196393:-1
position: 196393
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:195991-196116:-1:exon

position:195991:-1
position: 195991
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:196116:-1
position: 196116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:194806-194935:-1:exon

position:194935:-1
position: 194935
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

NOP9
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: NOP9
note: NOP9 nucleolar protein; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 198249..205729
location: region:198249-205729:1
so has part: feature:198249-205729:1:exon
subclass of: SO_0000010

128901871
type: Gene
SIO_000068: ncbigene

position:198249:1
position: 198249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:205729:1
position: 205729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:198249-205729:1:exon

NOP9
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 75485
gene: NOP9
product: NOP9 nucleolar protein
experiment: COORDINATES: polyA evidence [ECO:0006239]
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; deleted 2 bases in 2 codons
transcript id: XM_054184025.1
SIO_010081: NOP9
subclass of: SO_0000673
so part of: NOP9
location: join(198249..198572,199896..200271,202123..202252,202903..203092,203505..203645,204168..204269,204682..204903,205002..205107,205206..205729)
location: region:198249-205729:1
so has part: feature:198249-198572:1:exon
so has part: feature:199896-200271:1:exon
so has part: feature:202123-202252:1:exon
so has part: feature:202903-203092:1:exon
so has part: feature:203505-203645:1:exon
so has part: feature:204168-204269:1:exon
so has part: feature:204682-204903:1:exon
so has part: feature:205002-205107:1:exon
so has part: feature:205206-205729:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:198249-198572:1:exon

position:198572:1
position: 198572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:199896-200271:1:exon

position:199896:1
position: 199896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:200271:1
position: 200271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:202123-202252:1:exon

position:202123:1
position: 202123
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:202252:1
position: 202252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:202903-203092:1:exon

position:202903:1
position: 202903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:203092:1
position: 203092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:203505-203645:1:exon

position:203505:1
position: 203505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:203645:1
position: 203645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:204168-204269:1:exon

position:204168:1
position: 204168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:204269:1
position: 204269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:204682-204903:1:exon

position:204682:1
position: 204682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:204903:1
position: 204903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:205002-205107:1:exon

position:205002:1
position: 205002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:205107:1
position: 205107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:205206-205729:1:exon

position:205206:1
position: 205206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

NOP9
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: NOP9
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: nucleolar protein 9
translation: MGVRRGPRSEAGPGSGPRLDPDTAGYFRRALETLQEGXSPEELALFAPHVLAEAAAAGPGVALDPGGSRVLQALLPQAPLGTLGRLLPLLVXGGLGGPAGHPLGARVLEAALGRVLVALGGAVGGEEGVGQVEEAVGQLATTVKEDLVAFARHPAGSFVLRGLLRLLGALLSPACASLCLQVALQVLHRSQSPACARLRDALIGRLAPPGESGLVRGLQDAERGRLLEAAMTVAGPGRLRQLFREELKGRLRGVATHRLANHGLQRLLDHAPPDVVGEVLSELGPALAEPLASGHPGVLAALAAACRRHPPLQQEGLRCLFQAFGCWEPPERRRGCVGLLAGLRPFEGGDEGAEPEPPSLGPVTLHGSLLLQHLLHFGDPTPVLGGLEALPPPALVALARSPPGSRVWDALLASPTVPPRARRRLLRKLKGRFLSLACHRNGSRVLDAVWASASAPARAAIAEELASQRHALQSDPHGRGVARSLELDLFLRRRRAWERLQAAPGRRRGLLGPLLQE
SIO_010081: NOP9
subclass of: SO_0000673
so part of: NOP9
location: join(198444..198572,199896..200271,202123..202252,202903..203092,203505..203645,204168..204269,204682..204903,205002..205107,205206..205363)
location: region:198444-205363:1
so has part: feature:198444-198572:1:exon
so has part: feature:199896-200271:1:exon
so has part: feature:202123-202252:1:exon
so has part: feature:202903-203092:1:exon
so has part: feature:203505-203645:1:exon
so has part: feature:204168-204269:1:exon
so has part: feature:204682-204903:1:exon
so has part: feature:205002-205107:1:exon
so has part: feature:205206-205363:1:exon

XP_054040000.1
type: Protein
SIO_000068: ncbiprotein

position:198444:1
position: 198444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:205363:1
position: 205363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:198444-198572:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:199896-200271:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:202123-202252:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:202903-203092:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:203505-203645:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:204168-204269:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:204682-204903:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:205002-205107:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:205206-205363:1:exon

CIDEB
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: CIDEB
note: cell death inducing DFFA like effector b; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(206224..213274)
location: region:206224-213274:-1
so has part: feature:206224-213274:-1:exon
subclass of: SO_0000010

128901872
type: Gene
SIO_000068: ncbigene

position:206224:-1
position: 206224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:213274:-1
position: 213274
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:206224-213274:-1:exon

CIDEB
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 75485
gene: CIDEB
product: cell death inducing DFFA like effector b
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transcript id: XM_054184026.1
SIO_010081: CIDEB
subclass of: SO_0000673
so part of: CIDEB
location: complement(join(206224..206375,207582..207769,207837..207986,212808..213274))
location: region:206224-213274:-1
so has part: feature:212808-213274:-1:exon
so has part: feature:207837-207986:-1:exon
so has part: feature:207582-207769:-1:exon
so has part: feature:206224-206375:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:212808-213274:-1:exon

position:212808:-1
position: 212808
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:207837-207986:-1:exon

position:207837:-1
position: 207837
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:207986:-1
position: 207986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:207582-207769:-1:exon

position:207582:-1
position: 207582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:207769:-1
position: 207769
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:206224-206375:-1:exon

position:206375:-1
position: 206375
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CIDEB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: CIDEB
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: cell death activator CIDE-B
translation: MLDLGGRHLGRGGPSGGRGWPREPGSPFHSPTVSRPPPPPRRAVARRAWPPPAPRPRPFWVCDQQRGRPRGLVATSLRELREQAGEALGLGPPARLVLAADGTAVESEAFFGALAPHTPLVALGPGQRWQPPTTGPYWEPEPPPGRGWPPEEEVAQVTVALAKASPRQLVGRLRVTAAVRGLRCDLGGLGPERLLRELLRLLAAMTRAVGQSLLTLSAALRRLLDGAPPQSVTYAR
SIO_010081: CIDEB
subclass of: SO_0000673
so part of: CIDEB
location: complement(join(206252..206375,207582..207769,207837..207986,212808..213057))
location: region:206252-213057:-1
so has part: feature:212808-213057:-1:exon
so has part: feature:207837-207986:-1:exon
so has part: feature:207582-207769:-1:exon
so has part: feature:206252-206375:-1:exon

XP_054040001.1
type: Protein
SIO_000068: ncbiprotein

position:206252:-1
position: 206252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:213057:-1
position: 213057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:212808-213057:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:207837-207986:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:207582-207769:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:206252-206375:-1:exon