Rissa tridactyla isolate bRisTri1 chromosome 28, bRisTri1.patW.cur.20221130, whole genome shotgun sequence.
type: Entry
definition: Rissa tridactyla isolate bRisTri1 chromosome 28, bRisTri1.patW.cur.20221130, whole genome shotgun sequence.
sequence version: NC_071493.1
sequence date: 2023-03-15
sequence: sequence
division: CON
label: NC_071493.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA940128
dblink: SAMN32104255
keyword: WGS
keyword: RefSeq
source: Rissa tridactyla (black-legged kittiwake)
organism: Rissa tridactyla
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Laridae; Rissa.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM053012.1.\nAssembly name: bRisTri1.patW.cur.20221130\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2023/02/09. The original whole-genome shotgun project has the\naccession JAPUFG000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 30-NOV-2022\nAssembly Method :: hifiasm v. 0.16.1+galaxy2; Bionano Solve\n v. 3.7.0+galaxy0; SALSA2 v. 2.3+galaxy2\nAssembly Name :: bRisTri1.patW.cur.20221130\nDiploid :: Paternal Haplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 33.0x\nSequencing Technology :: PacBio Sequel II HiFi; Bionano DLS; Arima\n Hi-C v2\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_028500815.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/08/2023\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 386404
topology: linear
so has quality: SO_0000987
location: 1..386404
location: region:1-386404:1
RO_0002162: 75485

NC_071493
type: RefSeq
SIO_000068: refseq

PRJNA940128
type: BioProject
SIO_000068: bioproject

SAMN32104255
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:386404:1
position: 386404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-386404:1:source
so part of: sequence
organism: Rissa tridactyla
mol type: genomic DNA
isolate: bRisTri1
chromosome: 28
sex: female
tissue type: blood
dev stage: adult
country: USA: Middleton Island, Alaska
lat lon: 59.43 N 146.34 W
collection date: 2008/2010
collected by: Kyle Elliott

75485
type: Taxonomy
SIO_000068: taxonomy

TRNAL-UAG
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: TRNAL-UAG
note: transfer RNA leucine (anticodon UAG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 551..633
location: region:551-633:1
so has part: feature:551-633:1:exon
subclass of: SO_0000663

128901794
type: Gene
SIO_000068: ncbigene

position:551:1
position: 551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:633:1
position: 633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:551-633:1:exon

TRNAL-UAG
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 75485
gene: TRNAL-UAG
product: tRNA-Leu
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA leucine (anticodon UAG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:586..588,aa:Leu,seq:tag)
SIO_010081: TRNAL-UAG
subclass of: SO_0000673
so part of: TRNAL-UAG
location: 551..633
location: region:551-633:1
so has part: feature:551-633:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:551-633:1:exon

LOC128901790
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: LOC128901790
note: DNA-directed RNA polymerase II subunit RPB1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1805..51425)
location: region:1805-51425:-1
so has part: feature:1805-51425:-1:exon
subclass of: SO_0000010

128901790
type: Gene
SIO_000068: ncbigene

position:1805:-1
position: 1805
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:51425:-1
position: 51425
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1805-51425:-1:exon

LOC128901790
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 75485
gene: LOC128901790
product: DNA-directed RNA polymerase II subunit RPB1-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; deleted 6 bases in 5 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
transcript id: XM_054183939.1
SIO_010081: LOC128901790
subclass of: SO_0000673
so part of: LOC128901790
location: complement(join(1805..3096,5705..5858,7233..7346,8846..9032,11725..11928,14325..14507,16954..17058,17173..17273,18230..18476,20090..20314,21519..21724,23469..23574,25023..25194,28913..29096,30124..30346,31349..31552,33107..33201,34282..34450,35543..35752,40852..41062,45219..45343,46787..46919,51205..51425))
location: region:1805-51425:-1
so has part: feature:51205-51425:-1:exon
so has part: feature:46787-46919:-1:exon
so has part: feature:45219-45343:-1:exon
so has part: feature:40852-41062:-1:exon
so has part: feature:35543-35752:-1:exon
so has part: feature:34282-34450:-1:exon
so has part: feature:33107-33201:-1:exon
so has part: feature:31349-31552:-1:exon
so has part: feature:30124-30346:-1:exon
so has part: feature:28913-29096:-1:exon
so has part: feature:25023-25194:-1:exon
so has part: feature:23469-23574:-1:exon
so has part: feature:21519-21724:-1:exon
so has part: feature:20090-20314:-1:exon
so has part: feature:18230-18476:-1:exon
so has part: feature:17173-17273:-1:exon
so has part: feature:16954-17058:-1:exon
so has part: feature:14325-14507:-1:exon
so has part: feature:11725-11928:-1:exon
so has part: feature:8846-9032:-1:exon
so has part: feature:7233-7346:-1:exon
so has part: feature:5705-5858:-1:exon
so has part: feature:1805-3096:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:51205-51425:-1:exon

position:51205:-1
position: 51205
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:46787-46919:-1:exon

position:46787:-1
position: 46787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:46919:-1
position: 46919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:45219-45343:-1:exon

position:45219:-1
position: 45219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:45343:-1
position: 45343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:40852-41062:-1:exon

position:40852:-1
position: 40852
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:41062:-1
position: 41062
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:35543-35752:-1:exon

position:35543:-1
position: 35543
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:35752:-1
position: 35752
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:34282-34450:-1:exon

position:34282:-1
position: 34282
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:34450:-1
position: 34450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:33107-33201:-1:exon

position:33107:-1
position: 33107
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:33201:-1
position: 33201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:31349-31552:-1:exon

position:31349:-1
position: 31349
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31552:-1
position: 31552
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:30124-30346:-1:exon

position:30124:-1
position: 30124
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30346:-1
position: 30346
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:28913-29096:-1:exon

position:28913:-1
position: 28913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29096:-1
position: 29096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:25023-25194:-1:exon

position:25023:-1
position: 25023
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25194:-1
position: 25194
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:23469-23574:-1:exon

position:23469:-1
position: 23469
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23574:-1
position: 23574
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:21519-21724:-1:exon

position:21519:-1
position: 21519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21724:-1
position: 21724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:20090-20314:-1:exon

position:20090:-1
position: 20090
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20314:-1
position: 20314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:18230-18476:-1:exon

position:18230:-1
position: 18230
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18476:-1
position: 18476
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:17173-17273:-1:exon

position:17173:-1
position: 17173
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17273:-1
position: 17273
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:16954-17058:-1:exon

position:16954:-1
position: 16954
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17058:-1
position: 17058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:14325-14507:-1:exon

position:14325:-1
position: 14325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14507:-1
position: 14507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:11725-11928:-1:exon

position:11725:-1
position: 11725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11928:-1
position: 11928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:8846-9032:-1:exon

position:8846:-1
position: 8846
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9032:-1
position: 9032
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:7233-7346:-1:exon

position:7233:-1
position: 7233
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7346:-1
position: 7346
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:5705-5858:-1:exon

position:5705:-1
position: 5705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5858:-1
position: 5858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:1805-3096:-1:exon

position:3096:-1
position: 3096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC128901790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: LOC128901790
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; deleted 6 bases in 5 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like
translation: MQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLAIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDTTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFKFDYTNERALRRTLQEELVKDILSNAHIQNELEREFEKMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINSRLPSDLHPVKVVEGVKELSRKLVIVNGEDPLSRQAQENATLLFNIHLRSTLCSRRMVEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVSRISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTSRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKHGMEIPSALPGLGGAGPTGMFFGSAPSPMGGMSPAMTPWNQGATPAYGAWSPSVGSGMTPGGAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPAPASPYIPSPGGAMSPSYSPTSPRLRAALAPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYXPTSPNYSPTSPSYSPTSPSYSPTSPVTPPPAPATPPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYXPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEDN
SIO_010081: LOC128901790
subclass of: SO_0000673
so part of: LOC128901790
location: complement(join(1937..3096,5705..5858,7233..7346,8846..9032,11725..11928,14325..14507,16954..17058,17173..17273,18230..18476,20090..20314,21519..21724,23469..23574,25023..25194,28913..29096,30124..30346,31349..31552,33107..33201,34282..34450,35543..35752,40852..41062,45219..45343,46787..46919,51205..51422))
location: region:1937-51422:-1
so has part: feature:51205-51422:-1:exon
so has part: feature:46787-46919:-1:exon
so has part: feature:45219-45343:-1:exon
so has part: feature:40852-41062:-1:exon
so has part: feature:35543-35752:-1:exon
so has part: feature:34282-34450:-1:exon
so has part: feature:33107-33201:-1:exon
so has part: feature:31349-31552:-1:exon
so has part: feature:30124-30346:-1:exon
so has part: feature:28913-29096:-1:exon
so has part: feature:25023-25194:-1:exon
so has part: feature:23469-23574:-1:exon
so has part: feature:21519-21724:-1:exon
so has part: feature:20090-20314:-1:exon
so has part: feature:18230-18476:-1:exon
so has part: feature:17173-17273:-1:exon
so has part: feature:16954-17058:-1:exon
so has part: feature:14325-14507:-1:exon
so has part: feature:11725-11928:-1:exon
so has part: feature:8846-9032:-1:exon
so has part: feature:7233-7346:-1:exon
so has part: feature:5705-5858:-1:exon
so has part: feature:1937-3096:-1:exon

XP_054039914.1
type: Protein
SIO_000068: ncbiprotein

position:1937:-1
position: 1937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:51422:-1
position: 51422
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:51205-51422:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:46787-46919:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:45219-45343:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:40852-41062:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:35543-35752:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:34282-34450:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:33107-33201:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:31349-31552:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:30124-30346:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:28913-29096:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:25023-25194:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:23469-23574:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:21519-21724:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:20090-20314:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:18230-18476:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:17173-17273:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:16954-17058:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:14325-14507:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:11725-11928:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:8846-9032:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:7233-7346:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:5705-5858:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1937-3096:-1:exon

LOC128901789
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: LOC128901789
note: vitelline membrane outer layer protein 1 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 52049..54317
location: region:52049-54317:1
so has part: feature:52049-54317:1:exon
subclass of: SO_0000010

128901789
type: Gene
SIO_000068: ncbigene

position:52049:1
position: 52049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54317:1
position: 54317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:52049-54317:1:exon

LOC128901789
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 75485
gene: LOC128901789
product: vitelline membrane outer layer protein 1 homolog
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transcript id: XM_054183938.1
SIO_010081: LOC128901789
subclass of: SO_0000673
so part of: LOC128901789
location: join(52049..52474,52593..52691,53871..54317)
location: region:52049-54317:1
so has part: feature:52049-52474:1:exon
so has part: feature:52593-52691:1:exon
so has part: feature:53871-54317:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:52049-52474:1:exon

position:52474:1
position: 52474
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:52593-52691:1:exon

position:52593:1
position: 52593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52691:1
position: 52691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:53871-54317:1:exon

position:53871:1
position: 53871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC128901789
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: LOC128901789
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: vitelline membrane outer layer protein 1 homolog
translation: MASSLHPWVALVALVAPVWGWSGDATTTIISVDNGGPWGDWGDPEFCPKGTYASGFQLKVEPRKGFFGDDTGLNGVRLLCDGRGTVTSSEGPRGAWSLPMTCAPGYYVVAFRLRVEPPRGLWDDTAANNMDVTCSDGSVLEGLGGLAGTWGNWSVPCPQGRGRVCGLRTRLEPPQRGGDDTGLNDLHLFCCA
SIO_010081: LOC128901789
subclass of: SO_0000673
so part of: LOC128901789
location: join(52298..52474,52593..52691,53871..54174)
location: region:52298-54174:1
so has part: feature:52298-52474:1:exon
so has part: feature:52593-52691:1:exon
so has part: feature:53871-54174:1:exon

XP_054039913.1
type: Protein
SIO_000068: ncbiprotein

position:52298:1
position: 52298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54174:1
position: 54174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:52298-52474:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:52593-52691:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:53871-54174:1:exon

LOC128901785
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: LOC128901785
note: chromodomain-helicase-DNA-binding protein 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(58942..133875)
location: region:58942-133875:-1
so has part: feature:58942-133875:-1:exon
subclass of: SO_0000010

128901785
type: Gene
SIO_000068: ncbigene

position:58942:-1
position: 58942
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:133875:-1
position: 133875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:58942-133875:-1:exon

LOC128901785
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 75485
gene: LOC128901785
product: chromodomain-helicase-DNA-binding protein 3-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
transcript id: XM_054183936.1
SIO_010081: LOC128901785
subclass of: SO_0000673
so part of: LOC128901785
location: complement(join(58942..59091,60210..60336,63243..63406,66156..66351,72943..73075,75344..75452,75544..75657,75903..76001,76204..76339,76895..77007,78738..78900,79575..79719,84600..84733,85555..85640,86758..86823,88648..88825,89421..89587,91401..91632,93845..93969,94721..94838,97390..97521,98977..99118,102040..102213,102751..102872,103552..103689,104673..104873,106139..106330,107966..108065,109051..109182,112876..113090,114191..114390,115446..115676,116503..116681,117778..117840,117983..118118,118504..118634,119519..119757,120575..120699,121104..121292,122397..122515,130291..130561,133263..133643,133740..133875))
location: region:58942-133875:-1
so has part: feature:133740-133875:-1:exon
so has part: feature:133263-133643:-1:exon
so has part: feature:130291-130561:-1:exon
so has part: feature:122397-122515:-1:exon
so has part: feature:121104-121292:-1:exon
so has part: feature:120575-120699:-1:exon
so has part: feature:119519-119757:-1:exon
so has part: feature:118504-118634:-1:exon
so has part: feature:117983-118118:-1:exon
so has part: feature:117778-117840:-1:exon
so has part: feature:116503-116681:-1:exon
so has part: feature:115446-115676:-1:exon
so has part: feature:114191-114390:-1:exon
so has part: feature:112876-113090:-1:exon
so has part: feature:109051-109182:-1:exon
so has part: feature:107966-108065:-1:exon
so has part: feature:106139-106330:-1:exon
so has part: feature:104673-104873:-1:exon
so has part: feature:103552-103689:-1:exon
so has part: feature:102751-102872:-1:exon
so has part: feature:102040-102213:-1:exon
so has part: feature:98977-99118:-1:exon
so has part: feature:97390-97521:-1:exon
so has part: feature:94721-94838:-1:exon
so has part: feature:93845-93969:-1:exon
so has part: feature:91401-91632:-1:exon
so has part: feature:89421-89587:-1:exon
so has part: feature:88648-88825:-1:exon
so has part: feature:86758-86823:-1:exon
so has part: feature:85555-85640:-1:exon
so has part: feature:84600-84733:-1:exon
so has part: feature:79575-79719:-1:exon
so has part: feature:78738-78900:-1:exon
so has part: feature:76895-77007:-1:exon
so has part: feature:76204-76339:-1:exon
so has part: feature:75903-76001:-1:exon
so has part: feature:75544-75657:-1:exon
so has part: feature:75344-75452:-1:exon
so has part: feature:72943-73075:-1:exon
so has part: feature:66156-66351:-1:exon
so has part: feature:63243-63406:-1:exon
so has part: feature:60210-60336:-1:exon
so has part: feature:58942-59091:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:133740-133875:-1:exon

position:133740:-1
position: 133740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:133263-133643:-1:exon

position:133263:-1
position: 133263
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:133643:-1
position: 133643
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:130291-130561:-1:exon

position:130291:-1
position: 130291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:130561:-1
position: 130561
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:122397-122515:-1:exon

position:122397:-1
position: 122397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:122515:-1
position: 122515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:121104-121292:-1:exon

position:121104:-1
position: 121104
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:121292:-1
position: 121292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:120575-120699:-1:exon

position:120575:-1
position: 120575
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:120699:-1
position: 120699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:119519-119757:-1:exon

position:119519:-1
position: 119519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:119757:-1
position: 119757
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:118504-118634:-1:exon

position:118504:-1
position: 118504
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:118634:-1
position: 118634
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:117983-118118:-1:exon

position:117983:-1
position: 117983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:118118:-1
position: 118118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:117778-117840:-1:exon

position:117778:-1
position: 117778
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:117840:-1
position: 117840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:116503-116681:-1:exon

position:116503:-1
position: 116503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:116681:-1
position: 116681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:115446-115676:-1:exon

position:115446:-1
position: 115446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:115676:-1
position: 115676
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:114191-114390:-1:exon

position:114191:-1
position: 114191
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:114390:-1
position: 114390
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:112876-113090:-1:exon

position:112876:-1
position: 112876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:113090:-1
position: 113090
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:109051-109182:-1:exon

position:109051:-1
position: 109051
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:109182:-1
position: 109182
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:107966-108065:-1:exon

position:107966:-1
position: 107966
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:108065:-1
position: 108065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:106139-106330:-1:exon

position:106139:-1
position: 106139
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:106330:-1
position: 106330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:104673-104873:-1:exon

position:104673:-1
position: 104673
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:104873:-1
position: 104873
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:103552-103689:-1:exon

position:103552:-1
position: 103552
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:103689:-1
position: 103689
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:102751-102872:-1:exon

position:102751:-1
position: 102751
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:102872:-1
position: 102872
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:102040-102213:-1:exon

position:102040:-1
position: 102040
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:102213:-1
position: 102213
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:98977-99118:-1:exon

position:98977:-1
position: 98977
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:99118:-1
position: 99118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:97390-97521:-1:exon

position:97390:-1
position: 97390
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:97521:-1
position: 97521
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:94721-94838:-1:exon

position:94721:-1
position: 94721
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:94838:-1
position: 94838
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:93845-93969:-1:exon

position:93845:-1
position: 93845
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:93969:-1
position: 93969
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:91401-91632:-1:exon

position:91401:-1
position: 91401
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:91632:-1
position: 91632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:89421-89587:-1:exon

position:89421:-1
position: 89421
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:89587:-1
position: 89587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:88648-88825:-1:exon

position:88648:-1
position: 88648
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:88825:-1
position: 88825
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:86758-86823:-1:exon

position:86758:-1
position: 86758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:86823:-1
position: 86823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:85555-85640:-1:exon

position:85555:-1
position: 85555
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:85640:-1
position: 85640
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:84600-84733:-1:exon

position:84600:-1
position: 84600
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:84733:-1
position: 84733
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 32
SIO_000628: feature:79575-79719:-1:exon

position:79575:-1
position: 79575
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:79719:-1
position: 79719
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 33
SIO_000628: feature:78738-78900:-1:exon

position:78738:-1
position: 78738
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:78900:-1
position: 78900
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 34
SIO_000628: feature:76895-77007:-1:exon

position:76895:-1
position: 76895
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:77007:-1
position: 77007
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 35
SIO_000628: feature:76204-76339:-1:exon

position:76204:-1
position: 76204
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:76339:-1
position: 76339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 36
SIO_000628: feature:75903-76001:-1:exon

position:75903:-1
position: 75903
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:76001:-1
position: 76001
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 37
SIO_000628: feature:75544-75657:-1:exon

position:75544:-1
position: 75544
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:75657:-1
position: 75657
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 38
SIO_000628: feature:75344-75452:-1:exon

position:75344:-1
position: 75344
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:75452:-1
position: 75452
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 39
SIO_000628: feature:72943-73075:-1:exon

position:72943:-1
position: 72943
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:73075:-1
position: 73075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 40
SIO_000628: feature:66156-66351:-1:exon

position:66156:-1
position: 66156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:66351:-1
position: 66351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 41
SIO_000628: feature:63243-63406:-1:exon

position:63243:-1
position: 63243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:63406:-1
position: 63406
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 42
SIO_000628: feature:60210-60336:-1:exon

position:60210:-1
position: 60210
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:60336:-1
position: 60336
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 43
SIO_000628: feature:58942-59091:-1:exon

position:59091:-1
position: 59091
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC128901785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: LOC128901785
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 3-like
translation: MASPLREDEEEEEEMVVSEAEGDEDDEEEEDEDEEEEEDAAAXRSPRYRRPPPPRRHLPPPPPAPPPPPPPPPPPVPAPAAGPPEAPTDGDDELLRGLEGALGVKKKKRGPRKQKENKPGKPRKRKKLVSEDELESEREEYQREEYREKSESGGSDSGGAARKRRRKHREKKEKKTKRRKKADEEGGQKVKAVEQKSSAQLLGAWGLEDVDHVFTEEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVAAVAPEAPPPPLRKAKTKEGKGPGHKKRSKSPRVPELKRKMKGRKMAPLKIKLGVLGGKRKKSSSSEDAGEAEEESDAESPGVLGATARPDPTTRLKKLKRGRPGRKKKKAPCAGLSRERGPVGTGTAPAHGPGPEEEGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGRWSCPHCEKEGVQWEAKEEEEEEEEEEEEGEKEEEDDHMEYCRVCKDGGELLCCDACVSSYHIHCLNPPLPEVPNGEWLCPRCTCPVLKGRVQKILYWRWGEPPXPPWPPPPGAPPPEGPPQALQGRSEREFFVKWVGLSYWHCSWIKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGDDDPKSEKRGAGGDPLFGGMEERFYRYGIKPEWMTVHRIINHSVDRKGQYHYLVKWRDLPYDQATWEEDEMPIPDYDLHKLAYWKHREVFMGEDPAQPRRYKKKKKETPGEGPPDSPTNDPTVKYETQPRFITATGGTLHLYQLEGLNWLRFSWAQSTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPAFYVVTYTGDKDSRAIIRENEFSFDDNAMKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIEHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKASGKLLLLQKMLRKLKEQNHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVVIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGDNKEEDSSVIHYDNEAIARLLDRNQDATDDADVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTSQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSLPELAPEPSADSKRSSRASSPAKTCPPSPEQSGPPTPGPPTPATPAPSERGDGPGPPPDRDDGDTRDEKDPKGPEKMETEPPVPEVPPSPGDGSEAEGPRKGEEEEGPGQREPEAEGPPAREERPGAEAEKGPGGEKGDEKPPEEEPKERPGDPDPKREEVKAEKEPKLEARANGRRDDKAEKPRFMFNIADGGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWTDIQNDGAFGVINEPFKGEASKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNMTQDPSHPAMALNTRFAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSRIPPIAARLQMSERSILSRLASKGTESHPPPTFPPGPYATPQSYGGTFGTPPAGALPPGGANY…
SIO_010081: LOC128901785
subclass of: SO_0000673
so part of: LOC128901785
location: complement(join(58988..59091,60210..60336,63243..63406,66156..66351,72943..73075,75344..75452,75544..75657,75903..76001,76204..76339,76895..77007,78738..78900,79575..79719,84600..84733,85555..85640,86758..86823,88648..88825,89421..89587,91401..91632,93845..93969,94721..94838,97390..97521,98977..99118,102040..102213,102751..102872,103552..103689,104673..104873,106139..106330,107966..108065,109051..109182,112876..113090,114191..114390,115446..115676,116503..116681,117778..117840,117983..118118,118504..118634,119519..119757,120575..120699,121104..121292,122397..122515,130291..130554))
location: region:58988-130554:-1
so has part: feature:130291-130554:-1:exon
so has part: feature:122397-122515:-1:exon
so has part: feature:121104-121292:-1:exon
so has part: feature:120575-120699:-1:exon
so has part: feature:119519-119757:-1:exon
so has part: feature:118504-118634:-1:exon
so has part: feature:117983-118118:-1:exon
so has part: feature:117778-117840:-1:exon
so has part: feature:116503-116681:-1:exon
so has part: feature:115446-115676:-1:exon
so has part: feature:114191-114390:-1:exon
so has part: feature:112876-113090:-1:exon
so has part: feature:109051-109182:-1:exon
so has part: feature:107966-108065:-1:exon
so has part: feature:106139-106330:-1:exon
so has part: feature:104673-104873:-1:exon
so has part: feature:103552-103689:-1:exon
so has part: feature:102751-102872:-1:exon
so has part: feature:102040-102213:-1:exon
so has part: feature:98977-99118:-1:exon
so has part: feature:97390-97521:-1:exon
so has part: feature:94721-94838:-1:exon
so has part: feature:93845-93969:-1:exon
so has part: feature:91401-91632:-1:exon
so has part: feature:89421-89587:-1:exon
so has part: feature:88648-88825:-1:exon
so has part: feature:86758-86823:-1:exon
so has part: feature:85555-85640:-1:exon
so has part: feature:84600-84733:-1:exon
so has part: feature:79575-79719:-1:exon
so has part: feature:78738-78900:-1:exon
so has part: feature:76895-77007:-1:exon
so has part: feature:76204-76339:-1:exon
so has part: feature:75903-76001:-1:exon
so has part: feature:75544-75657:-1:exon
so has part: feature:75344-75452:-1:exon
so has part: feature:72943-73075:-1:exon
so has part: feature:66156-66351:-1:exon
so has part: feature:63243-63406:-1:exon
so has part: feature:60210-60336:-1:exon
so has part: feature:58988-59091:-1:exon

XP_054039911.1
type: Protein
SIO_000068: ncbiprotein

position:58988:-1
position: 58988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:130554:-1
position: 130554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:130291-130554:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:122397-122515:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:121104-121292:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:120575-120699:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:119519-119757:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:118504-118634:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:117983-118118:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:117778-117840:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:116503-116681:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:115446-115676:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:114191-114390:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:112876-113090:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:109051-109182:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:107966-108065:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:106139-106330:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:104673-104873:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:103552-103689:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:102751-102872:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:102040-102213:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:98977-99118:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:97390-97521:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:94721-94838:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:93845-93969:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:91401-91632:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:89421-89587:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:88648-88825:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:86758-86823:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:85555-85640:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:84600-84733:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:79575-79719:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:78738-78900:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:76895-77007:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:76204-76339:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:75903-76001:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:75544-75657:-1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:75344-75452:-1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:72943-73075:-1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:66156-66351:-1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:63243-63406:-1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:60210-60336:-1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:58988-59091:-1:exon

LOC128901787
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: LOC128901787
note: uncharacterized LOC128901787; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 130100..136088
location: region:130100-136088:1
so has part: feature:130100-136088:1:exon
subclass of: SO_0000011

128901787
type: Gene
SIO_000068: ncbigene

position:130100:1
position: 130100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:136088:1
position: 136088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:130100-136088:1:exon

LOC128901787
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 75485
nc RNA class: lncRNA
gene: LOC128901787
product: uncharacterized LOC128901787
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XR_008463522.1
SIO_010081: LOC128901787
subclass of: SO_0000673
so part of: LOC128901787
location: join(130100..130148,131678..131777,133726..133897,135971..136088)
location: region:130100-136088:1
so has part: feature:130100-130148:1:exon
so has part: feature:131678-131777:1:exon
so has part: feature:133726-133897:1:exon
so has part: feature:135971-136088:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:130100-130148:1:exon

position:130148:1
position: 130148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:131678-131777:1:exon

position:131678:1
position: 131678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:131777:1
position: 131777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:133726-133897:1:exon

position:133726:1
position: 133726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:133897:1
position: 133897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:135971-136088:1:exon

position:135971:1
position: 135971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC128901791
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: LOC128901791
note: mucin-2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 140456..>144003
location: region:140456-144003:1
so has part: feature:140456-144003:1:exon
subclass of: SO_0000010

128901791
type: Gene
SIO_000068: ncbigene

position:140456:1
position: 140456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:144003:1
position: 144003
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:140456-144003:1:exon

LOC128901791
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 75485
gene: LOC128901791
product: mucin-2-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
transcript id: XM_054183941.1
SIO_010081: LOC128901791
subclass of: SO_0000673
so part of: LOC128901791
location: join(140456..140519,141824..143006,143316..>144003)
location: region:140456-144003:1
so has part: feature:140456-140519:1:exon
so has part: feature:141824-143006:1:exon
so has part: feature:143316-144003:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:140456-140519:1:exon

position:140519:1
position: 140519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:141824-143006:1:exon

position:141824:1
position: 141824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:143006:1
position: 143006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:143316-144003:1:exon

position:143316:1
position: 143316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC128901791
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: LOC128901791
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mucin-2-like
translation: MGVRLWGSLALVCICFLVVMRATTTTPPTNTTTSTPTTTSQPTTTTPTTNTTTVPTTTTTTSTPTTPTTTTTNPTTTTPPSNNTTTTPPTSTSQPTNTTTPTPTTTTTPTPTTTTQPTNNTTTTTPLTTTPTITTTPQPTNNTATPTPMTTTTTTPTTTTEPTNTTPTPTTTTQPTSTTPTPTTTTQPTNTTPTPTTTTQPTNNTTTPTPTTTTSSTPTTTTPTPTTTTPHTNNTTTTTPLTTTPTPTTTTQPTTTTPTPTTTTQPTTNTTTPNPTTTTPTPTTTTQPTTTTTPTHTTNTQHTNTTTPTPTTTTPSTNNTTNPTPTTTTHPTTTTPTPTTTTPPTNNTTTSTPTTTSQPTTTTPTNNTTTVPTTTTTTSTPTTPTTTTPKTTTPSTNHTTTTPPTSTSQPTNNTTTQPTTTTPTNNTTTVPTTTTTTSTPTTPTTTTTNPTTTTPSTNHTTTTQPTSTSQPTNNTTTPTPMTTTTPTPTTSTPSTNTTTPTPTTTTKPTNNTTTPTPTITTQPINTTPTPTTTTPSTTNTTTPTPTTTTQPTNNTTTPTPTKTTTTPTPTTTTQPTNTTTTPTPTTTTQPTNTTPTPTTTTQPTNTTTPTPMTTPTPTPTTTTQPINNTTTPTPTTTTQPTNTTT
SIO_010081: LOC128901791
subclass of: SO_0000673
so part of: LOC128901791
location: join(140456..140519,141824..143006,143316..>144003)
location: region:140456-144003:1
so has part: feature:140456-140519:1:exon
so has part: feature:141824-143006:1:exon
so has part: feature:143316-144003:1:exon

XP_054039916.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:140456-140519:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:141824-143006:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:143316-144003:1:exon

SRRT
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: SRRT
note: serrate, RNA effector molecule; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(270916..287535)
location: region:270916-287535:-1
so has part: feature:270916-287535:-1:exon
subclass of: SO_0000010

128901788
type: Gene
SIO_000068: ncbigene

position:270916:-1
position: 270916
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:287535:-1
position: 287535
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:270916-287535:-1:exon

SRRT
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 75485
gene: SRRT
product: serrate, RNA effector molecule
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transcript id: XM_054183937.1
SIO_010081: SRRT
subclass of: SO_0000673
so part of: SRRT
location: complement(join(270916..271012,271403..271502,271880..271969,272505..272661,273387..273581,274634..274788,274911..275081,276103..276402,277604..277682,277814..277875,278711..278887,279528..279630,280138..280245,280865..281025,281147..281316,283436..283624,285382..285528,286097..286225,286695..286817,287455..287535))
location: region:270916-287535:-1
so has part: feature:287455-287535:-1:exon
so has part: feature:286695-286817:-1:exon
so has part: feature:286097-286225:-1:exon
so has part: feature:285382-285528:-1:exon
so has part: feature:283436-283624:-1:exon
so has part: feature:281147-281316:-1:exon
so has part: feature:280865-281025:-1:exon
so has part: feature:280138-280245:-1:exon
so has part: feature:279528-279630:-1:exon
so has part: feature:278711-278887:-1:exon
so has part: feature:277814-277875:-1:exon
so has part: feature:277604-277682:-1:exon
so has part: feature:276103-276402:-1:exon
so has part: feature:274911-275081:-1:exon
so has part: feature:274634-274788:-1:exon
so has part: feature:273387-273581:-1:exon
so has part: feature:272505-272661:-1:exon
so has part: feature:271880-271969:-1:exon
so has part: feature:271403-271502:-1:exon
so has part: feature:270916-271012:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:287455-287535:-1:exon

position:287455:-1
position: 287455
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:286695-286817:-1:exon

position:286695:-1
position: 286695
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:286817:-1
position: 286817
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:286097-286225:-1:exon

position:286097:-1
position: 286097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:286225:-1
position: 286225
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:285382-285528:-1:exon

position:285382:-1
position: 285382
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:285528:-1
position: 285528
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:283436-283624:-1:exon

position:283436:-1
position: 283436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:283624:-1
position: 283624
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:281147-281316:-1:exon

position:281147:-1
position: 281147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:281316:-1
position: 281316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:280865-281025:-1:exon

position:280865:-1
position: 280865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:281025:-1
position: 281025
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:280138-280245:-1:exon

position:280138:-1
position: 280138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:280245:-1
position: 280245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:279528-279630:-1:exon

position:279528:-1
position: 279528
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:279630:-1
position: 279630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:278711-278887:-1:exon

position:278711:-1
position: 278711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:278887:-1
position: 278887
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:277814-277875:-1:exon

position:277814:-1
position: 277814
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:277875:-1
position: 277875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:277604-277682:-1:exon

position:277604:-1
position: 277604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:277682:-1
position: 277682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:276103-276402:-1:exon

position:276103:-1
position: 276103
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:276402:-1
position: 276402
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:274911-275081:-1:exon

position:274911:-1
position: 274911
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:275081:-1
position: 275081
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:274634-274788:-1:exon

position:274634:-1
position: 274634
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:274788:-1
position: 274788
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:273387-273581:-1:exon

position:273387:-1
position: 273387
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:273581:-1
position: 273581
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:272505-272661:-1:exon

position:272505:-1
position: 272505
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:272661:-1
position: 272661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:271880-271969:-1:exon

position:271880:-1
position: 271880
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:271969:-1
position: 271969
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:271403-271502:-1:exon

position:271403:-1
position: 271403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:271502:-1
position: 271502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:270916-271012:-1:exon

position:271012:-1
position: 271012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SRRT
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: SRRT
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: serrate RNA effector molecule homolog
translation: MGDSDDEYDRRRRDKFRRERSDYDRSRERDERRRDDWSDRDWDRGRERRSRGEYRDYDRTRRERFSPPRHELSPPQKRLRRDWDEHSGDPYHSGYDMPYSGGGAGPTYGPPQPWGHPEMHVMQHHILPIQARLGNIAEVDLGMAPPVMKSFKEFLLSLDDAVDETEAVKRYNDYKLDFRRQQMQDFFLAHKDEEWFRSKYHPDEAGKRKQEAQAALRNRLNVFLYLSENGWFDNLLLDIDRAPAIIKTLDAAVIKMEGGTENDLRILEQEEEEERQEKAEAAKKEEARPPDADRKEKEEKEEGKKGEGEAPSEEKAKKGPEEEEEKEKGRKEEEGDKEGKKASKKRPRQRNGDDSDEGSASDSESEGEGGRGDKDEEKGKEEKAREEEGGPAAPKAKEKESXGGGTEPKPRPLHKTCSLFMRNIAPNISQAEIVALCKRYPGFMRVALSDPQPERRFFRRGWVTFDRSVNIKEICWSLQNIRLRDCELSPGVNRDLTRRVRNVSGITQHRPIVRNDIKLAARLVHALDGRAQLWATPGHALGGAAPPGGGGTAGTTGDAPPPASATPQNPEGGDGDAAAAAGAVGWQNPVLKHITDYLIEEVSAEEEELLGRGGGDAEEGPREANPAEVTVERDEKLLKVLDRLLLYLRIVHSVDYYNTSEYLNEDEMPNRCGIVHVRGPLPPNRVSHGEVAEWQKSFEERLGPLLAGREALPEEEAQRLGRKDPEQELEKFVTANTQELGKDKWLCPLSGKKFKGPEFVRKHIFNKHGEKMGAVRKEVLFFNNFLMDPKRPALPEGKGGPPPGPAQGLAPGLPYPPQTPQGMMPYGQPRPPILGYGGGPPLPPRALRRPVGGNYDTFRGQGGYLNKPRSRMVRGDPRAIIEYRDLDAPEDVDFF
SIO_010081: SRRT
subclass of: SO_0000673
so part of: SRRT
location: complement(join(270937..271012,271403..271502,271880..271969,272505..272661,273387..273581,274634..274788,274911..275081,276103..276402,277604..277682,277814..277875,278711..278887,279528..279630,280138..280245,280865..281025,281147..281316,283436..283624,285382..285528,286097..286225,286695..286813))
location: region:270937-286813:-1
so has part: feature:286695-286813:-1:exon
so has part: feature:286097-286225:-1:exon
so has part: feature:285382-285528:-1:exon
so has part: feature:283436-283624:-1:exon
so has part: feature:281147-281316:-1:exon
so has part: feature:280865-281025:-1:exon
so has part: feature:280138-280245:-1:exon
so has part: feature:279528-279630:-1:exon
so has part: feature:278711-278887:-1:exon
so has part: feature:277814-277875:-1:exon
so has part: feature:277604-277682:-1:exon
so has part: feature:276103-276402:-1:exon
so has part: feature:274911-275081:-1:exon
so has part: feature:274634-274788:-1:exon
so has part: feature:273387-273581:-1:exon
so has part: feature:272505-272661:-1:exon
so has part: feature:271880-271969:-1:exon
so has part: feature:271403-271502:-1:exon
so has part: feature:270937-271012:-1:exon

XP_054039912.1
type: Protein
SIO_000068: ncbiprotein

position:270937:-1
position: 270937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:286813:-1
position: 286813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:286695-286813:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:286097-286225:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:285382-285528:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:283436-283624:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:281147-281316:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:280865-281025:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:280138-280245:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:279528-279630:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:278711-278887:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:277814-277875:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:277604-277682:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:276103-276402:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:274911-275081:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:274634-274788:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:273387-273581:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:272505-272661:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:271880-271969:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:271403-271502:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:270937-271012:-1:exon

LOC128901784
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: LOC128901784
note: ephrin type-B receptor 4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 289803..303659
location: region:289803-303659:1
so has part: feature:289803-303659:1:exon
subclass of: SO_0000010

128901784
type: Gene
SIO_000068: ncbigene

position:289803:1
position: 289803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:303659:1
position: 303659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:289803-303659:1:exon

LOC128901784
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 75485
gene: LOC128901784
product: ephrin type-B receptor 4-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 6 bases in 6 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 48 Proteins
transcript id: XM_054183935.1
SIO_010081: LOC128901784
subclass of: SO_0000673
so part of: LOC128901784
location: join(289803..290284,290568..290638,291719..293317,294240..294395,294965..295294,296147..296278,296762..296927,297391..297490,297897..297946,298201..298314,298826..299071,299590..299809,300545..300694,301317..301511,301861..302026,302712..303659)
location: region:289803-303659:1
so has part: feature:289803-290284:1:exon
so has part: feature:290568-290638:1:exon
so has part: feature:291719-293317:1:exon
so has part: feature:294240-294395:1:exon
so has part: feature:294965-295294:1:exon
so has part: feature:296147-296278:1:exon
so has part: feature:296762-296927:1:exon
so has part: feature:297391-297490:1:exon
so has part: feature:297897-297946:1:exon
so has part: feature:298201-298314:1:exon
so has part: feature:298826-299071:1:exon
so has part: feature:299590-299809:1:exon
so has part: feature:300545-300694:1:exon
so has part: feature:301317-301511:1:exon
so has part: feature:301861-302026:1:exon
so has part: feature:302712-303659:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:289803-290284:1:exon

position:290284:1
position: 290284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:290568-290638:1:exon

position:290568:1
position: 290568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:290638:1
position: 290638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:291719-293317:1:exon

position:291719:1
position: 291719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:293317:1
position: 293317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:294240-294395:1:exon

position:294240:1
position: 294240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:294395:1
position: 294395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:294965-295294:1:exon

position:294965:1
position: 294965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:295294:1
position: 295294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:296147-296278:1:exon

position:296147:1
position: 296147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:296278:1
position: 296278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:296762-296927:1:exon

position:296762:1
position: 296762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:296927:1
position: 296927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:297391-297490:1:exon

position:297391:1
position: 297391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:297490:1
position: 297490
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:297897-297946:1:exon

position:297897:1
position: 297897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:297946:1
position: 297946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:298201-298314:1:exon

position:298201:1
position: 298201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:298314:1
position: 298314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:298826-299071:1:exon

position:298826:1
position: 298826
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:299071:1
position: 299071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:299590-299809:1:exon

position:299590:1
position: 299590
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:299809:1
position: 299809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:300545-300694:1:exon

position:300545:1
position: 300545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:300694:1
position: 300694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:301317-301511:1:exon

position:301317:1
position: 301317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:301511:1
position: 301511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:301861-302026:1:exon

position:301861:1
position: 301861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:302026:1
position: 302026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:302712-303659:1:exon

position:302712:1
position: 302712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC128901784
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: LOC128901784
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 6 bases in 6 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: ephrin type-B receptor 4-like
translation: MGLWLLWLWVPLGFAEEETLLNTRLETSDLKWTVYPPGEGQWEELSGLDEERQASVRTFEVCSGWAPPAPPQNSWLRSGWVPRRGATHVYAELRFTLLACDSLPRPRHARHARRGDTPADTDTPMDTPGDVLGDTDVLGDTPRDIPRDGPTHRGALGDGPSGEVALSNGPGNRDALSNGPGYRDAAGNGLGNNPGNQDALSNSPGNRDALSNGLGNGPGNRDTHSNGPGDRGALSKGLGNDLGNHDAHSNGPGNHDACSNSLANGPGNHDTYSNSPGNHISPTNGHRNQDVRGNGLGNDPRNRDGPGNGLGTALATTFPLATALATVMPIAMALATMMLLATTLATALATVMRLATALATTLETAMVLATALETAQATTFPLATALATAMPVAPAPPAAAAARPPPRPCKETFNVFYHEADADTATALTPPWMENPYVKVDTVAAEHLSRRAGGAGGGRPSGRVNRKTLRLGPLSRAGFYLAFQDLGACMALLSVRLYFQRCPEVTTRLARFPATVPRELVAPVAGQCLEGAVPAGAGAPVMYCREDGRWAEPPAQGCVCGPGREPDGGLGCRACPPETFKAEAGGGRCEPCPPLSQAPSPGATSCPCRPGFYRAPGEGPALRCSAPPSAPRSLVARLNGSGVRLEWSTPLDGGGRPDITYAVGCRACPERAPCGPCSRLAFVPAATGLRVPGVTVTGLRPYVTYGFSVSARNGVSHLSPLPAPAQELNVTTTKDVPLPVYDVVRIGGSPTGVTLSWPTPPPAPPGGHVLDYEVKYYEKVGGGEGPPMFLKVPAPRAELGGLRRGGLYGVRVRARSEAGYGDFGPETAVTTQGAEGSRGEHGGLVAGAAALGGLLVLALLAGTLLCFRRHSHRHKEDADRHGHHGGKLYIDPLTYEDPGVALRDFAQEIDVACVKIEEVIGAGEFGEVCRGRLALPGRPESPVAVKTLKGGAGERQRRDFLGEAARMGQFAHPNVVRLRGVVTASAPAMILTEFMENGALDAFLAGWGTLGPLQLVAMLRGIAAGMRYLAETGFVHRDLAARNILVDAQLVCKVSDFGLSRALEEESSADPTYTSSLGGKIPIRWTAPEAIAFRKFTSASDAWSYGIVMWEVMSFGERPYWDMSNQDVINAIEQDYRLPPPPPCPTALHRLMLDCWQRDRNARPRFPDIVSALDRLIRHPATLRVTAPDTHRPSPPRLAQPGPPGPPGPPLRLGGRVAAHPPAGPIRGDLQQRRRHQPGAAAAAAQRGPAAHGGDAGRPPAADPRQRPEPAEPPQGRPPLLSPPPPALAPALPRWPPGRHGPAQRGWALGESPRWPPSQDGHPEMDVESRWPPKMAAKPRWPPQDGRQTKMAAPRWPPNQDGRHKMATLRPAL
SIO_010081: LOC128901784
subclass of: SO_0000673
so part of: LOC128901784
location: join(290233..290284,290568..290638,291719..293317,294240..294395,294965..295294,296147..296278,296762..296927,297391..297490,297897..297946,298201..298314,298826..299071,299590..299809,300545..300694,301317..301511,301861..302026,302712..303092)
location: region:290233-303092:1
so has part: feature:290233-290284:1:exon
so has part: feature:290568-290638:1:exon
so has part: feature:291719-293317:1:exon
so has part: feature:294240-294395:1:exon
so has part: feature:294965-295294:1:exon
so has part: feature:296147-296278:1:exon
so has part: feature:296762-296927:1:exon
so has part: feature:297391-297490:1:exon
so has part: feature:297897-297946:1:exon
so has part: feature:298201-298314:1:exon
so has part: feature:298826-299071:1:exon
so has part: feature:299590-299809:1:exon
so has part: feature:300545-300694:1:exon
so has part: feature:301317-301511:1:exon
so has part: feature:301861-302026:1:exon
so has part: feature:302712-303092:1:exon

XP_054039910.1
type: Protein
SIO_000068: ncbiprotein

position:290233:1
position: 290233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:303092:1
position: 303092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:290233-290284:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:290568-290638:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:291719-293317:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:294240-294395:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:294965-295294:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:296147-296278:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:296762-296927:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:297391-297490:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:297897-297946:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:298201-298314:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:298826-299071:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:299590-299809:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:300545-300694:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:301317-301511:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:301861-302026:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:302712-303092:1:exon

LOC128901792
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: LOC128901792
note: aurora kinase C-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 362124..382219
location: region:362124-382219:1
so has part: feature:362124-382219:1:exon
subclass of: SO_0000010

128901792
type: Gene
SIO_000068: ncbigene

position:362124:1
position: 362124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:382219:1
position: 382219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:362124-382219:1:exon

LOC128901792
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 75485
gene: LOC128901792
product: aurora kinase C-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 38 Proteins
transcript id: XM_054183942.1
SIO_010081: LOC128901792
subclass of: SO_0000673
so part of: LOC128901792
location: join(362124..362142,362552..362591,364736..364829,365286..365343,366900..367091,369300..369438,374075..374223,378230..378404,381808..382219)
location: region:362124-382219:1
so has part: feature:362124-362142:1:exon
so has part: feature:362552-362591:1:exon
so has part: feature:364736-364829:1:exon
so has part: feature:365286-365343:1:exon
so has part: feature:366900-367091:1:exon
so has part: feature:369300-369438:1:exon
so has part: feature:374075-374223:1:exon
so has part: feature:378230-378404:1:exon
so has part: feature:381808-382219:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:362124-362142:1:exon

position:362142:1
position: 362142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:362552-362591:1:exon

position:362552:1
position: 362552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:362591:1
position: 362591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:364736-364829:1:exon

position:364736:1
position: 364736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:364829:1
position: 364829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:365286-365343:1:exon

position:365286:1
position: 365286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:365343:1
position: 365343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:366900-367091:1:exon

position:366900:1
position: 366900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:367091:1
position: 367091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:369300-369438:1:exon

position:369300:1
position: 369300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:369438:1
position: 369438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:374075-374223:1:exon

position:374075:1
position: 374075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:374223:1
position: 374223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:378230-378404:1:exon

position:378230:1
position: 378230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:378404:1
position: 378404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:381808-382219:1:exon

position:381808:1
position: 381808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC128901792
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 75485
gene: LOC128901792
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: aurora kinase C-like
translation: MSQKENVNPGLAKCGALTPLAPQRVPRKDPPTSDAPNRKGGTLPGAGRVPLEPPSTLPPPAPPVRTFSLEDFEVGRPLGKGKFGNVYLARERGSGLLVALKVLFKSQVEKEGVEHQLRREIEIQAHLRHPNILRLYNYFHDRRRVFLILEFAPRGELYKELQRCQRLDAPRTATLMEELADALLYCHGRKVIHRDIKPENLLLGLKGELKIADFGWSVHAPSLRRRTLCGTLDYLPPEMVAGGGHDEKVDLWCLGVLCYELLVGSPPFESPSHAQTYKRIAQVDLRFPPSVPEGARDLISRLLRLSPGQRLPLRGVLQHPWVRANSRRALPPSAR
SIO_010081: LOC128901792
subclass of: SO_0000673
so part of: LOC128901792
location: join(362553..362591,364736..364829,365286..365343,366900..367091,369300..369438,374075..374223,378230..378404,381808..381969)
location: region:362553-381969:1
so has part: feature:362553-362591:1:exon
so has part: feature:364736-364829:1:exon
so has part: feature:365286-365343:1:exon
so has part: feature:366900-367091:1:exon
so has part: feature:369300-369438:1:exon
so has part: feature:374075-374223:1:exon
so has part: feature:378230-378404:1:exon
so has part: feature:381808-381969:1:exon

XP_054039917.1
type: Protein
SIO_000068: ncbiprotein

position:362553:1
position: 362553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:381969:1
position: 381969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:362553-362591:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:364736-364829:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:365286-365343:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:366900-367091:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:369300-369438:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:374075-374223:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:378230-378404:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:381808-381969:1:exon

LOC128901793
type: Gene
subclass of: SO_0000704
RO_0002162: 75485
gene: LOC128901793
note: uncharacterized LOC128901793; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(381809..383695)
location: region:381809-383695:-1
so has part: feature:381809-383695:-1:exon
subclass of: SO_0000011

128901793
type: Gene
SIO_000068: ncbigene

position:381809:-1
position: 381809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:383695:-1
position: 383695
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:381809-383695:-1:exon

LOC128901793
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 75485
nc RNA class: lncRNA
gene: LOC128901793
product: uncharacterized LOC128901793, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XR_008463524.1
SIO_010081: LOC128901793
subclass of: SO_0000673
so part of: LOC128901793
location: complement(join(381809..382032,382844..383257,383581..383695))
location: region:381809-383695:-1
so has part: feature:383581-383695:-1:exon
so has part: feature:382844-383257:-1:exon
so has part: feature:381809-382032:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:383581-383695:-1:exon

position:383581:-1
position: 383581
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:382844-383257:-1:exon

position:382844:-1
position: 382844
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:383257:-1
position: 383257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:381809-382032:-1:exon

position:382032:-1
position: 382032
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC128901793
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 75485
nc RNA class: lncRNA
gene: LOC128901793
product: uncharacterized LOC128901793, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XR_008463523.1
SIO_010081: LOC128901793
subclass of: SO_0000673
so part of: LOC128901793
location: complement(join(381809..382032,382351..382508,382828..383257,383581..383695))
location: region:381809-383695:-1
so has part: feature:383581-383695:-1:exon
so has part: feature:382828-383257:-1:exon
so has part: feature:382351-382508:-1:exon
so has part: feature:381809-382032:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:383581-383695:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:382828-383257:-1:exon

position:382828:-1
position: 382828
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:382351-382508:-1:exon

position:382351:-1
position: 382351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:382508:-1
position: 382508
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:381809-382032:-1:exon