Rissa tridactyla isolate bRisTri1 chromosome 26, bRisTri1.patW.cur.20221130, whole genome shotgun sequence.
Rissa tridactyla (black-legged kittiwake)
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Laridae; Rissa.
REFSEQ INFORMATION: The reference sequence is identical to\nCM053010.1.\nAssembly name: bRisTri1.patW.cur.20221130\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2023/02/09. The original whole-genome shotgun project has the\naccession JAPUFG000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 30-NOV-2022\nAssembly Method :: hifiasm v. 0.16.1+galaxy2; Bionano Solve\n v. 3.7.0+galaxy0; SALSA2 v. 2.3+galaxy2\nAssembly Name :: bRisTri1.patW.cur.20221130\nDiploid :: Paternal Haplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 33.0x\nSequencing Technology :: PacBio Sequel II HiFi; Bionano DLS; Arima\n Hi-C v2\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_028500815.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/08/2023\n##Genome-Annotation-Data-END##
olfactory receptor 49-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: olfactory receptor 49-like
olfactory receptor 14J1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
olfactory receptor 10AG1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 38 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
serine/threonine-protein kinase SBK1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
serine/threonine-protein kinase SBK1-like, transcript variant X4
COORDINATES: polyA evidence [ECO:0006239]
serine/threonine-protein kinase SBK1-like, transcript variant X3
serine/threonine-protein kinase SBK1-like, transcript variant X2
serine/threonine-protein kinase SBK1-like, transcript variant X1
uncharacterized serine/threonine-protein kinase SBK3-like isoform X2
serine/threonine-protein kinase SBK1-like isoform X1
CD5 antigen-like; Derived by automated computational analysis using gene prediction method: Gnomon.
soluble scavenger receptor cysteine-rich domain-containing protein SSC5D-like; Derived by automated computational analysis using gene prediction method: Gnomon.
soluble scavenger receptor cysteine-rich domain-containing protein SSC5D-like, transcript variant X5
soluble scavenger receptor cysteine-rich domain-containing protein SSC5D-like, transcript variant X4
soluble scavenger receptor cysteine-rich domain-containing protein SSC5D-like, transcript variant X3
soluble scavenger receptor cysteine-rich domain-containing protein SSC5D-like, transcript variant X2
soluble scavenger receptor cysteine-rich domain-containing protein SSC5D-like, transcript variant X1
soluble scavenger receptor cysteine-rich domain-containing protein SSC5D-like isoform X5
soluble scavenger receptor cysteine-rich domain-containing protein SSC5D-like isoform X4
soluble scavenger receptor cysteine-rich domain-containing protein SSC5D-like isoform X3
soluble scavenger receptor cysteine-rich domain-containing protein SSC5D-like isoform X2
soluble scavenger receptor cysteine-rich domain-containing protein SSC5D-like isoform X1
uncharacterized LOC128901526; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
deleted in malignant brain tumors 1 protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
deleted in malignant brain tumors 1 protein-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins
deleted in malignant brain tumors 1 protein-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
deleted in malignant brain tumors 1 protein-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
deleted in malignant brain tumors 1 protein-like isoform X1
deleted in malignant brain tumors 1 protein-like isoform X2
zinc finger protein 883-like; Derived by automated computational analysis using gene prediction method: Gnomon.
sulfotransferase family 2B member 1; Derived by automated computational analysis using gene prediction method: Gnomon.
sulfotransferase family 2B member 1, transcript variant X5
sulfotransferase family 2B member 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins
sulfotransferase family 2B member 1, transcript variant X3
sulfotransferase family 2B member 1, transcript variant X1
sulfotransferase family 2B member 1, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
deleted in malignant brain tumors 1 protein-like, transcript variant X3
deleted in malignant brain tumors 1 protein-like, transcript variant X4
deleted in malignant brain tumors 1 protein-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
deleted in malignant brain tumors 1 protein-like isoform X3
deleted in malignant brain tumors 1 protein-like isoform X4
soluble scavenger receptor cysteine-rich domain-containing protein SSC5D-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
butyrophilin subfamily 2 member A1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
butyrophilin subfamily 1 member A1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
butyrophilin subfamily 3 member A2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
butyrophilin subfamily 3 member A1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
butyrophilin-like protein 9; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128901557; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128901533; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128901559; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128901558; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128901555; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128901555, transcript variant X1
uncharacterized LOC128901555, transcript variant X2
uncharacterized LOC128901555, transcript variant X3
uncharacterized LOC128901555, transcript variant X4
uncharacterized LOC128901555, transcript variant X6
uncharacterized LOC128901555, transcript variant X5
uncharacterized protein LOC128901555 isoform X1
uncharacterized protein LOC128901555 isoform X2
uncharacterized protein LOC128901555 isoform X3
uncharacterized protein LOC128901555 isoform X4
uncharacterized protein LOC128901555 isoform X6
uncharacterized protein LOC128901555 isoform X5
ubiquitin conjugating enzyme E2 M; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
LOW QUALITY PROTEIN: NEDD8-conjugating enzyme Ubc12
tripartite motif containing 28; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: transcription intermediary factor 1-beta
zinc finger protein 79-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 79-like, transcript variant X2
zinc finger protein 79-like, transcript variant X1
zinc finger and BTB domain containing 45; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger and BTB domain containing 45
zinc finger and BTB domain-containing protein 45
THAP domain-containing protein 7-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
LOW QUALITY PROTEIN: THAP domain-containing protein 7-like
solute carrier family 27 member 5; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: long-chain fatty acid transport protein 5
transfer RNA glutamine (anticodon CUG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA lysine (anticodon UUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
histone H2A type 2-B; Derived by automated computational analysis using gene prediction method: Gnomon.
histone H2B 5-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 80 Proteins
transfer RNA glycine (anticodon GCC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA asparagine (anticodon GUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA serine (anticodon GCU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA alanine (anticodon CGC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA methionine (anticodon CAU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA aspartic acid (anticodon GUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA threonine (anticodon AGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA glutamic acid (anticodon CUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Josephin domain containing 2; Derived by automated computational analysis using gene prediction method: Gnomon.
transmembrane protease serine 9-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 47 Proteins
kallikrein-8-like; Derived by automated computational analysis using gene prediction method: Gnomon.
kallikrein-8-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
kallikrein-8-like, transcript variant X1
kallikrein-8-like, transcript variant X2
rRNA 2'-O-methyltransferase fibrillarin-like; Derived by automated computational analysis using gene prediction method: Gnomon.
rRNA 2'-O-methyltransferase fibrillarin-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: rRNA 2'-O-methyltransferase fibrillarin-like
uncharacterized LOC128901568; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128901568, transcript variant X2
uncharacterized LOC128901568, transcript variant X1
cytochrome c oxidase subunit 6B1; Derived by automated computational analysis using gene prediction method: Gnomon.
IgGFc-binding protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
uncharacterized LOC128901539; Derived by automated computational analysis using gene prediction method: Gnomon.
sushi, nidogen and EGF-like domain-containing protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
sushi, nidogen and EGF-like domain-containing protein 1
FXYD domain-containing ion transport regulator 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
FXYD domain-containing ion transport regulator 3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
leucine-rich repeat LGI family member 4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
leucine-rich repeat LGI family member 4-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: leucine-rich repeat LGI family member 4-like
ETHE1 persulfide dioxygenase; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
persulfide dioxygenase ETHE1, mitochondrial
pleckstrin homology-like domain family B member 3; Derived by automated computational analysis using gene prediction method: Gnomon.
pleckstrin homology-like domain family B member 3, transcript variant X1
pleckstrin homology-like domain family B member 3, transcript variant X3
pleckstrin homology-like domain family B member 3, transcript variant X2
pleckstrin homology-like domain family B member 3 isoform X1
pleckstrin homology-like domain family B member 3 isoform X2
uncharacterized protein LOC128901563 isoform X3
pleckstrin homology-like domain family B member 3
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
LOW QUALITY PROTEIN: pleckstrin homology-like domain family B member 3
ADP-ribosylhydrolase ARH1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: ADP-ribosylhydrolase ARH1-like
leukotriene B4 receptor 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128901545; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128901546; Derived by automated computational analysis using gene prediction method: Gnomon.
E3 ubiquitin-protein ligase rnf213-alpha-like; Derived by automated computational analysis using gene prediction method: Gnomon.
E3 ubiquitin-protein ligase rnf213-alpha-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; substituted 2 bases at 2 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase rnf213-alpha-like
olfactory receptor 14A16-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 37 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 36 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 35 Proteins