Mycoplasma phocoenae strain C264-GEN chromosome, complete genome.
Bacteria; Mycoplasmatota; Mollicutes; Mycoplasmataceae; Mycoplasma.
Novel Mycoplasma species detected in Phocoena phocoena (harbor porpoise) from the USA
Submitted (12-APR-2020) CBER, US FDA, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP051481.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: DEC-2019\nAssembly Method :: HGAP v. 3.0\nAssembly Name :: Mycoplasma sp. Phocoena C-264-GEN\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 1054.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/10/2023 19:29:43\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 613\nCDSs (total) :: 573\nGenes (coding) :: 569\nCDSs (with protein) :: 569\nGenes (RNA) :: 40\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 31\nncRNAs :: 3\nPseudo Genes (total) :: 4\nCDSs (without protein) :: 4\nPseudo Genes (ambiguous residues) :: 0 of 4\nPseudo Genes (frameshifted) :: 2 of 4\nPseudo Genes (incomplete) :: 2 of 4\nPseudo Genes (internal stop) :: 0 of 4\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013301955.1
GO:0000179 - rRNA (adenine-N6,N6-)-dimethyltransferase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
COORDINATES: similar to AA sequence:RefSeq:WP_004416292.1
COORDINATES: similar to AA sequence:RefSeq:WP_004416861.1
GO:0016805 - dipeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
Sapep family Mn(2+)-dependent dipeptidase
COORDINATES: similar to AA sequence:RefSeq:WP_004416108.1
GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
GO:0043952 - protein transport by the Sec complex [Evidence IEA]
GO:0015297 - antiporter activity [Evidence IEA]; GO:0042910 - xenobiotic transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00613.1
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010924814.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000311 - plastid large ribosomal subunit [Evidence IEA]
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013456528.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000315 - organellar large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013954906.1
COORDINATES: similar to AA sequence:RefSeq:WP_006886807.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006289 - nucleotide-excision repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006608738.1
GO:0009380 - excinuclease repair complex [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF021546.2
COORDINATES: similar to AA sequence:RefSeq:WP_014335520.1
GO:0004816 - asparagine-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0006421 - asparaginyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012789.2
COORDINATES: protein motif:HMM:NF014679.2
COORDINATES: protein motif:HMM:NF012770.2
GO:0004177 - aminopeptidase activity [Evidence IEA]
GO:0030163 - protein catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013302083.1
GO:0004478 - methionine adenosyltransferase activity [Evidence IEA]
GO:0006556 - S-adenosylmethionine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006608593.1
COORDINATES: similar to AA sequence:RefSeq:WP_010925225.1
COORDINATES: similar to AA sequence:RefSeq:WP_004416358.1
GO:0004479 - methionyl-tRNA formyltransferase activity [Evidence IEA]
GO:0006431 - methionyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004416360.1
GO:0004844 - uracil DNA N-glycosylase activity [Evidence IEA]
GO:0006284 - base-excision repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011387648.1
GO:0004071 - aspartate-ammonia ligase activity [Evidence IEA]
GO:0006529 - asparagine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011264555.1
COORDINATES: similar to AA sequence:RefSeq:WP_011283541.1
GO:0004799 - thymidylate synthase activity [Evidence IEA]
GO:0006231 - dTMP biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004421468.1
COORDINATES: protein motif:HMM:NF013079.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012869.2
COORDINATES: similar to AA sequence:RefSeq:WP_004416842.1
COORDINATES: protein motif:HMM:TIGR00099.1
COORDINATES: similar to AA sequence:RefSeq:WP_004416626.1
GO:0003999 - adenine phosphoribosyltransferase activity [Evidence IEA]
GO:0009116 - nucleoside metabolic process [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004416628.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_015287268.1
GO:0017118 - lipoyltransferase activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: protein motif:HMM:NF013703.2
COORDINATES: similar to AA sequence:RefSeq:WP_006886322.1
COORDINATES: similar to AA sequence:RefSeq:WP_004416231.1
COORDINATES: protein motif:HMM:TIGR01297.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_004796722.1
COORDINATES: protein motif:HMM:NF017007.2
COORDINATES: similar to AA sequence:RefSeq:WP_004795903.1
COORDINATES: similar to AA sequence:RefSeq:WP_013054454.1
COORDINATES: protein motif:HMM:TIGR00400.1
GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IEA]
GO:0015693 - magnesium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006608413.1
COORDINATES: similar to AA sequence:RefSeq:WP_013021704.1
COORDINATES: similar to AA sequence:RefSeq:WP_006608411.1
COORDINATES: similar to AA sequence:RefSeq:WP_013526732.1
COORDINATES: similar to AA sequence:RefSeq:WP_004024217.1
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF012210.0
COORDINATES: protein motif:HMM:NF024702.2
leucine-rich repeat domain-containing protein
COORDINATES: protein motif:HMM:NF013232.2
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
COORDINATES: similar to AA sequence:RefSeq:WP_004416249.1
GO:0004824 - lysine-tRNA ligase activity [Evidence IEA]
GO:0006430 - lysyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002882053.1
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF015039.2
COORDINATES: protein motif:HMM:NF013188.2
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005683402.1
COORDINATES: similar to AA sequence:RefSeq:WP_010924897.1
GO:0004823 - leucine-tRNA ligase activity [Evidence IEA]
GO:0006429 - leucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014114.2
COORDINATES: similar to AA sequence:RefSeq:WP_004415341.1
COORDINATES: similar to AA sequence:RefSeq:WP_004416515.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004540 - ribonuclease activity [Evidence IEA]
GO:0042254 - ribosome biogenesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006608322.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010925226.1
COORDINATES: similar to AA sequence:RefSeq:WP_011206391.1
COORDINATES: similar to AA sequence:RefSeq:WP_004794528.1
COORDINATES: protein motif:HMM:NF013844.2
COORDINATES: protein motif:HMM:NF013053.2
COORDINATES: similar to AA sequence:RefSeq:WP_010925114.1
GO:0008534 - oxidized purine nucleobase lesion DNA N-glycosylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013468.2
GO:0003725 - double-stranded RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014829865.1
RpiB/LacA/LacB family sugar-phosphate isomerase
COORDINATES: protein motif:HMM:TIGR00665.1
GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004416895.1
COORDINATES: protein motif:HMM:NF013528.2
COORDINATES: protein motif:HMM:TIGR00231.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
ribosome biogenesis GTP-binding protein YihA/YsxC
COORDINATES: similar to AA sequence:RefSeq:WP_011206141.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:NF012651.2
COORDINATES: protein motif:HMM:TIGR00166.1
COORDINATES: protein motif:HMM:NF013056.2
COORDINATES: similar to AA sequence:RefSeq:WP_011283175.1
GO:0004634 - phosphopyruvate hydratase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00115.1
GO:0005854 - nascent polypeptide-associated complex [Evidence IEA]
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0051083 - 'de novo' cotranslational protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_041362883.1
COORDINATES: similar to AA sequence:RefSeq:WP_004796954.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE
COORDINATES: protein motif:HMM:TIGR00479.1
GO:0008649 - rRNA methyltransferase activity [Evidence IEA]
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
COORDINATES: protein motif:HMM:NF037510.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013526951.1
class I SAM-dependent DNA methyltransferase
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: protein motif:HMM:NF016109.2
COORDINATES: similar to AA sequence:RefSeq:WP_006886451.1
COORDINATES: protein motif:HMM:NF024487.2
COORDINATES: similar to AA sequence:RefSeq:WP_004419426.1
GO:0004830 - tryptophan-tRNA ligase activity [Evidence IEA]
GO:0006436 - tryptophanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004794844.1
GO:0004829 - threonine-tRNA ligase activity [Evidence IEA]
GO:0006435 - threonyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004416315.1
COORDINATES: protein motif:HMM:TIGR01865.1
GO:0005575 - cellular_component [Evidence IEA]
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
Cas9, originally named Csn1, is the large, multifunctional signature protein of type II CRISPR/Cas systems. It is well known even to general audiences because its RNA-guided endonuclease activity has made it a popular tool for custom editing of eukaryotic genomes; Derived by automated computational analysis using gene prediction method: Protein Homology.
type II CRISPR RNA-guided endonuclease Cas9
COORDINATES: similar to AA sequence:RefSeq:WP_020002866.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03639.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO:0051607 - defense response to virus [Evidence IEA]; GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
type II CRISPR-associated endonuclease Cas1
COORDINATES: similar to AA sequence:RefSeq:WP_004421511.1
COORDINATES: protein motif:HMM:NF033547.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011283803.1
GO:0003746 - translation elongation factor activity [Evidence IEA]
GO:0006414 - translational elongation [Evidence IEA]
signal recognition particle sRNA small type
COORDINATES: nucleotide motif:Rfam:14.4:RF00169
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_020003241.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_011205995.1
GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]
class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI
COORDINATES: similar to AA sequence:RefSeq:WP_006886761.1
GO:0005971 - ribonucleoside-diphosphate reductase complex [Evidence IEA]
GO:0030145 - manganese ion binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_004416286.1
GO:0046537 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity [Evidence IEA]
2,3-bisphosphoglycerate-independent phosphoglycerate mutase
COORDINATES: protein motif:HMM:NF018367.2
COORDINATES: similar to AA sequence:RefSeq:WP_011949276.1
GO:0016746 - acyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011949657.1
COORDINATES: similar to AA sequence:RefSeq:WP_006608574.1
COORDINATES: similar to AA sequence:RefSeq:WP_013354394.1
COORDINATES: protein motif:HMM:NF024491.2
phospholipase D-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004794752.1
COORDINATES: similar to AA sequence:RefSeq:WP_013526765.1
COORDINATES: similar to AA sequence:RefSeq:WP_004419016.1
COORDINATES: similar to AA sequence:RefSeq:WP_013054151.1
COORDINATES: similar to AA sequence:RefSeq:WP_013954899.1
GO:0008776 - acetate kinase activity [Evidence IEA]
GO:0006083 - acetate metabolic process [Evidence IEA]; GO:0006113 - fermentation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013022121.1
COORDINATES: similar to AA sequence:RefSeq:WP_013021760.1
GO:0045250 - cytosolic pyruvate dehydrogenase complex [Evidence IEA]
GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity [Evidence IEA]
GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IEA]
pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_006608573.1
alpha-ketoacid dehydrogenase subunit beta
COORDINATES: protein motif:HMM:NF023568.2
COORDINATES: similar to AA sequence:RefSeq:WP_004794209.1
GO:0004370 - glycerol kinase activity [Evidence IEA]
GO:0006071 - glycerol metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006608380.1
COORDINATES: similar to AA sequence:RefSeq:WP_004416591.1
COORDINATES: similar to AA sequence:RefSeq:WP_002881579.1
GO:0003924 - GTPase activity [Evidence IEA]; GO:0005047 - signal recognition particle binding [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]
signal recognition particle-docking protein FtsY
COORDINATES: similar to AA sequence:RefSeq:WP_004416564.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma factor-like helix-turn-helix DNA-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006886439.1
GO:0033862 - UMP kinase activity [Evidence IEA]
GO:0015949 - nucleobase-containing small molecule interconversion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013354916.1
GO:0008135 - translation factor activity, RNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013327.2
COORDINATES: protein motif:HMM:NF001688.0
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF020118.2
transcription termination/antitermination protein NusA
COORDINATES: similar to AA sequence:RefSeq:WP_004416829.1
COORDINATES: similar to AA sequence:RefSeq:WP_015084223.1
GO:0003743 - translation initiation factor activity [Evidence IEA]
GO:0006413 - translational initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004416833.1
GO:0019843 - rRNA binding [Evidence IEA]
GO:0006396 - RNA processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013526627.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]; GO:0002098 - tRNA wobble uridine modification [Evidence IEA]
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG
COORDINATES: similar to AA sequence:RefSeq:WP_004794825.1
23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH
COORDINATES: similar to AA sequence:RefSeq:WP_011949555.1
COORDINATES: similar to AA sequence:RefSeq:WP_004416347.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
ribosome small subunit-dependent GTPase A
COORDINATES: protein motif:HMM:NF012298.2
COORDINATES: protein motif:HMM:NF025053.2
protein phosphatase 2C domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013527123.1
GO:0004385 - guanylate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00095.1
GO:0052913 - 16S rRNA (guanine(966)-N(2))-methyltransferase activity [Evidence IEA]
GO:0031167 - rRNA methylation [Evidence IEA]
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD
COORDINATES: similar to AA sequence:RefSeq:WP_004415534.1
GO:0042586 - peptide deformylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017464.2
COORDINATES: protein motif:HMM:NF012514.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016085.2
COORDINATES: similar to AA sequence:RefSeq:WP_004416377.1
GO:0008176 - tRNA (guanine-N7-)-methyltransferase activity [Evidence IEA]
tRNA (guanosine(46)-N7)-methyltransferase TrmB
COORDINATES: similar to AA sequence:RefSeq:WP_010924951.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]; GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
GO:0006259 - DNA metabolic process [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013527154.1
transcription termination/antitermination protein NusG
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004416875.1
COORDINATES: similar to AA sequence:RefSeq:WP_015287557.1
GO:0008173 - RNA methyltransferase activity [Evidence IEA]
GO:0009451 - RNA modification [Evidence IEA]
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB
COORDINATES: similar to AA sequence:RefSeq:WP_004416222.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004416221.1
GO:0004814 - arginine-tRNA ligase activity [Evidence IEA]
GO:0006420 - arginyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004796509.1
GO:0009332 - glutamate-tRNA ligase complex [Evidence IEA]
GO:0004818 - glutamate-tRNA ligase activity [Evidence IEA]
GO:0006424 - glutamyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014471.2
GO:0015109 - chromate transmembrane transporter activity [Evidence IEA]
GO:0015703 - chromate transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013589.2
COORDINATES: protein motif:HMM:NF001413.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012235.2
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004416813.1
PhnD/SsuA/transferrin family substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004416814.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0015416 - ABC-type phosphonate transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0015716 - organic phosphonate transport [Evidence IEA]
phosphonate ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004416819.1
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF015276.2
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: similar to AA sequence:RefSeq:WP_004416115.1
COORDINATES: similar to AA sequence:RefSeq:WP_013301903.1
COORDINATES: similar to AA sequence:RefSeq:WP_004416324.1
bifunctional oligoribonuclease/PAP phosphatase NrnA
COORDINATES: similar to AA sequence:RefSeq:WP_004416325.1
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: protein motif:HMM:NF015179.2
COORDINATES: similar to AA sequence:RefSeq:WP_013354426.1
COORDINATES: protein motif:HMM:TIGR00647.1
GO:0043937 - regulation of sporulation [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
COORDINATES: similar to AA sequence:RefSeq:WP_013054808.1
COORDINATES: similar to AA sequence:RefSeq:WP_006608558.1
GO:0004585 - ornithine carbamoyltransferase activity [Evidence IEA]
GO:0042450 - arginine biosynthetic process via ornithine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020862889.1
COORDINATES: similar to AA sequence:RefSeq:WP_011264711.1
YebC/PmpR family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:TIGR00552.1
GO:0008795 - NAD+ synthase activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013045.2
GO:0009982 - pseudouridine synthase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO:0001522 - pseudouridine synthesis [Evidence IEA]; GO:0009451 - RNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013022148.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
energy-coupling factor transporter ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_005683800.1
COORDINATES: similar to AA sequence:RefSeq:WP_004414726.1
energy-coupling factor transporter transmembrane component T
COORDINATES: similar to AA sequence:RefSeq:WP_020104580.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003911 - DNA ligase (NAD+) activity [Evidence IEA]
GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004023896.1
COORDINATES: similar to AA sequence:RefSeq:WP_011264991.1
COORDINATES: similar to AA sequence:RefSeq:WP_013302145.1
COORDINATES: similar to AA sequence:RefSeq:WP_004423650.1
GO:0016990 - arginine deiminase activity [Evidence IEA]
GO:0019546 - arginine deiminase pathway [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013354650.1
COORDINATES: similar to AA sequence:RefSeq:WP_011264965.1
COORDINATES: similar to AA sequence:RefSeq:WP_012855288.1
COORDINATES: similar to AA sequence:RefSeq:WP_004796885.1
GO:0004749 - ribose phosphate diphosphokinase activity [Evidence IEA]
GO:0009156 - ribonucleoside monophosphate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014575.2
GO:0008168 - methyltransferase activity [Evidence IEA]
GO:0046118 - 7-methylguanosine biosynthetic process [Evidence IEA]; GO:0031167 - rRNA methylation [Evidence IEA]
16S rRNA (guanine(527)-N(7))-methyltransferase RsmG
COORDINATES: similar to AA sequence:RefSeq:WP_004416261.1
COORDINATES: similar to AA sequence:RefSeq:WP_013021853.1
GO:0016684 - oxidoreductase activity, acting on peroxide as acceptor [Evidence IEA]; GO:0008379 - thioredoxin peroxidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015083999.1
COORDINATES: similar to AA sequence:RefSeq:WP_013302249.1
GO:0008374 - O-acyltransferase activity [Evidence IEA]
GO:0006654 - phosphatidic acid biosynthetic process [Evidence IEA]
glycerol-3-phosphate 1-O-acyltransferase PlsY
COORDINATES: similar to AA sequence:RefSeq:WP_004797056.1
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0008973 - phosphopentomutase activity [Evidence IEA]
GO:0043094 - cellular metabolic compound salvage [Evidence IEA]; GO:0009117 - nucleotide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004415200.1
alanine/ornithine racemase family PLP-dependent enzyme
COORDINATES: protein motif:HMM:NF004491.0
GO:0004743 - pyruvate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013378.2
COORDINATES: similar to AA sequence:RefSeq:WP_004417456.1
COORDINATES: similar to AA sequence:RefSeq:WP_010924909.1
GO:0016149 - translation release factor activity, codon specific [Evidence IEA]
GO:0006415 - translational termination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013054650.1
GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0018364 - peptidyl-glutamine methylation [Evidence IEA]; GO:0006412 - translation [Evidence IEA]
peptide chain release factor N(5)-glutamine methyltransferase
COORDINATES: protein motif:HMM:NF014608.2
COORDINATES: protein motif:HMM:NF013705.2
COORDINATES: similar to AA sequence:RefSeq:WP_004415131.1
GO:0004127 - cytidylate kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004415134.1
COORDINATES: similar to AA sequence:RefSeq:WP_041363130.1
GO:0047952 - glycerol-3-phosphate dehydrogenase [NAD(P)+] activity [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0006072 - glycerol-3-phosphate metabolic process [Evidence IEA]
NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
COORDINATES: protein motif:HMM:NF012442.2
COORDINATES: similar to AA sequence:RefSeq:WP_014582782.1
COORDINATES: protein motif:HMM:NF013786.2
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
4'-phosphopantetheinyl transferase superfamily protein
COORDINATES: protein motif:HMM:NF013702.2
lysophospholipid acyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010924919.1
COORDINATES: similar to AA sequence:RefSeq:WP_015084182.1
GO:0005515 - protein binding [Evidence IEA]
GO:0007059 - chromosome segregation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013302389.1
COORDINATES: protein motif:HMM:NF014716.2
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC
COORDINATES: similar to AA sequence:RefSeq:WP_004416793.1
COORDINATES: similar to AA sequence:RefSeq:WP_015510760.1
GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB
YhjD/YihY/BrkB family envelope integrity protein
COORDINATES: similar to AA sequence:RefSeq:WP_004416798.1
COORDINATES: similar to AA sequence:RefSeq:WP_010925061.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004832 - valine-tRNA ligase activity [Evidence IEA]
GO:0006438 - valyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005683364.1
GO:0004126 - cytidine deaminase activity [Evidence IEA]
GO:0008655 - pyrimidine-containing compound salvage [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013954579.1
COORDINATES: similar to AA sequence:RefSeq:WP_004415526.1
COORDINATES: protein motif:HMM:NF012347.2
COORDINATES: similar to AA sequence:RefSeq:WP_004415519.1
GO:0000276 - mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO:0045264 - plasma membrane proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]
GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]
GO:0015986 - proton motive force-driven ATP synthesis [Evidence IEA]
COORDINATES: protein motif:HMM:NF012645.2
COORDINATES: protein motif:HMM:NF009975.0
COORDINATES: similar to AA sequence:RefSeq:WP_004415509.1
GO:0000275 - mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) [Evidence IEA]; GO:0045262 - plasma membrane proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]; GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01146.1
COORDINATES: similar to AA sequence:RefSeq:WP_011167038.1
COORDINATES: protein motif:HMM:NF014838.2
COORDINATES: protein motif:HMM:NF014533.2
GO:0009294 - DNA-mediated transformation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013526885.1
GO:0004731 - purine-nucleoside phosphorylase activity [Evidence IEA]
GO:0043096 - purine nucleobase salvage [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004419279.1
GO:0006206 - pyrimidine nucleobase metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015084267.1
GO:0004139 - deoxyribose-phosphate aldolase activity [Evidence IEA]
GO:0009264 - deoxyribonucleotide catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013456196.1
GO:0004845 - uracil phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004416490.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF020341.2
COORDINATES: similar to AA sequence:RefSeq:WP_011206255.1
Holliday junction branch migration protein RuvA
COORDINATES: similar to AA sequence:RefSeq:WP_004421561.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0009378 - four-way junction helicase activity [Evidence IEA]
Holliday junction branch migration DNA helicase RuvB
COORDINATES: similar to AA sequence:RefSeq:WP_004414870.1
GO:0004821 - histidine-tRNA ligase activity [Evidence IEA]
GO:0006427 - histidyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004414868.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004421164.1
COORDINATES: protein motif:HMM:TIGR02063.1
GO:0008997 - ribonuclease R activity [Evidence IEA]
GO:0006401 - RNA catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004794495.1
GO:0006450 - regulation of translational fidelity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013354647.1
GO:0016783 - sulfurtransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004796012.1
GO:0004813 - alanine-tRNA ligase activity [Evidence IEA]
GO:0006419 - alanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005683739.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013302494.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0070063 - RNA polymerase binding [Evidence IEA]
GO:0032784 - regulation of DNA-templated transcription elongation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015287277.1
COORDINATES: similar to AA sequence:RefSeq:WP_013301942.1
GO:0006166 - purine ribonucleoside salvage [Evidence IEA]
COORDINATES: protein motif:HMM:NF012398.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004415188.1
COORDINATES: similar to AA sequence:RefSeq:WP_006886536.1
GO:0052906 - tRNA (guanine(37)-N(1))-methyltransferase activity [Evidence IEA]
tRNA (guanosine(37)-N1)-methyltransferase TrmD
COORDINATES: similar to AA sequence:RefSeq:WP_013354332.1
COORDINATES: similar to AA sequence:RefSeq:WP_005683117.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:NF015531.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004416869.1
GO:0009340 - DNA topoisomerase IV complex [Evidence IEA]
GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF004044.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013448006.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_013456434.1
Tex-like N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004415206.1
GO:0004831 - tyrosine-tRNA ligase activity [Evidence IEA]
GO:0006437 - tyrosyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004421514.1
COORDINATES: similar to AA sequence:RefSeq:WP_011949713.1
COORDINATES: protein motif:HMM:NF017745.2
COORDINATES: similar to AA sequence:RefSeq:WP_013527152.1
COORDINATES: similar to AA sequence:RefSeq:WP_011283539.1
COORDINATES: protein motif:HMM:NF012349.2
COORDINATES: protein motif:HMM:NF020018.2
Rib/alpha-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004416211.1
COORDINATES: similar to AA sequence:RefSeq:WP_004427737.1
COORDINATES: protein motif:HMM:TIGR00745.1
COORDINATES: similar to AA sequence:RefSeq:WP_013456045.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012751621.1
COORDINATES: similar to AA sequence:RefSeq:WP_014335513.1
COORDINATES: similar to AA sequence:RefSeq:WP_011166709.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013456217.1
COORDINATES: similar to AA sequence:RefSeq:WP_013022116.1
COORDINATES: similar to AA sequence:RefSeq:WP_015587217.1
COORDINATES: similar to AA sequence:RefSeq:WP_020003228.1
COORDINATES: similar to AA sequence:RefSeq:WP_020003229.1
COORDINATES: similar to AA sequence:RefSeq:WP_006608291.1
COORDINATES: similar to AA sequence:RefSeq:WP_004416754.1
COORDINATES: similar to AA sequence:RefSeq:WP_004424528.1
tRNA (cytidine(34)-2'-O)-methyltransferase
COORDINATES: protein motif:HMM:NF016959.2
COORDINATES: protein motif:HMM:TIGR03596.1
COORDINATES: protein motif:HMM:NF012863.2
GDSL-type esterase/lipase family protein
COORDINATES: protein motif:HMM:NF013340.2
YbhB/YbcL family Raf kinase inhibitor-like protein
COORDINATES: similar to AA sequence:RefSeq:WP_011283187.1
GO:0048501 - signal recognition particle, plasma membrane targeting [Evidence IEA]
GO:0003924 - GTPase activity [Evidence IEA]; GO:0005048 - signal sequence binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004414592.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004820 - glycine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006426 - glycyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01391.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011264809.1
COORDINATES: protein motif:HMM:NF013909.2
Nif3-like dinuclear metal center hexameric protein
COORDINATES: protein motif:HMM:NF012730.2
COORDINATES: similar to AA sequence:RefSeq:WP_013054434.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011206510.1
COORDINATES: similar to AA sequence:RefSeq:WP_004414611.1
COORDINATES: similar to AA sequence:RefSeq:WP_015510935.1
GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010925162.1
COORDINATES: protein motif:HMM:TIGR00093.1
COORDINATES: similar to AA sequence:RefSeq:WP_013354641.1
COORDINATES: protein motif:HMM:NF024863.2
COORDINATES: protein motif:HMM:NF014443.2
COORDINATES: similar to AA sequence:RefSeq:WP_004416774.1
COORDINATES: similar to AA sequence:RefSeq:WP_013054175.1
GO:0003883 - CTP synthase activity [Evidence IEA]
GO:0006241 - CTP biosynthetic process [Evidence IEA]; GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004417104.1
GO:0004822 - isoleucine-tRNA ligase activity [Evidence IEA]
GO:0006428 - isoleucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013421.2
COORDINATES: similar to AA sequence:RefSeq:WP_015287119.1
COORDINATES: similar to AA sequence:RefSeq:WP_006886513.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004825 - methionine-tRNA ligase activity [Evidence IEA]; GO:0000049 - tRNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004417466.1
tRNA1(Val) (adenine(37)-N6)-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_004796742.1
GO:0000345 - cytosolic DNA-directed RNA polymerase complex [Evidence IEA]
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]
DNA-directed RNA polymerase subunit beta'
COORDINATES: similar to AA sequence:RefSeq:WP_005683520.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]; GO:0032549 - ribonucleoside binding [Evidence IEA]
DNA-directed RNA polymerase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_011283564.1
COORDINATES: similar to AA sequence:RefSeq:WP_002881205.1
GO:0015934 - large ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:NF012356.2
COORDINATES: protein motif:HMM:NF017911.2
COORDINATES: protein motif:HMM:NF015714.2
COORDINATES: nucleotide motif:Rfam:14.4:RF00011
COORDINATES: protein motif:HMM:NF013250.2
GO:0008444 - CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity [Evidence IEA]
GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011206502.1
COORDINATES: similar to AA sequence:RefSeq:WP_004795240.1
COORDINATES: similar to AA sequence:RefSeq:WP_013354659.1
16S rRNA (uracil(1498)-N(3))-methyltransferase
COORDINATES: protein motif:HMM:NF012320.2
COORDINATES: similar to AA sequence:RefSeq:WP_011949546.1
GO:0016434 - rRNA (cytosine) methyltransferase activity [Evidence IEA]
16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH
COORDINATES: similar to AA sequence:RefSeq:WP_004414549.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
GO:0051302 - regulation of cell division [Evidence IEA]
division/cell wall cluster transcriptional repressor MraZ
COORDINATES: similar to AA sequence:RefSeq:WP_011264876.1
COORDINATES: similar to AA sequence:RefSeq:WP_015286924.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0005762 - mitochondrial large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011290054.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
DNA-directed RNA polymerase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_004416977.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015286921.1
COORDINATES: similar to AA sequence:RefSeq:WP_004025773.1
COORDINATES: similar to AA sequence:RefSeq:WP_011283714.1
COORDINATES: similar to AA sequence:RefSeq:WP_004416986.1
COORDINATES: similar to AA sequence:RefSeq:WP_004416987.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019205 - nucleobase-containing compound kinase activity [Evidence IEA]
GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004416989.1
COORDINATES: similar to AA sequence:RefSeq:WP_014335575.1
COORDINATES: similar to AA sequence:RefSeq:WP_014335576.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000312 - plastid small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005683313.1
COORDINATES: similar to AA sequence:RefSeq:WP_013455947.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]
GO:0019843 - rRNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002881097.1
COORDINATES: similar to AA sequence:RefSeq:WP_002946164.1
COORDINATES: similar to AA sequence:RefSeq:WP_006886405.1
COORDINATES: similar to AA sequence:RefSeq:WP_005683434.1
COORDINATES: similar to AA sequence:RefSeq:WP_004023950.1
COORDINATES: similar to AA sequence:RefSeq:WP_013456343.1
COORDINATES: similar to AA sequence:RefSeq:WP_013054714.1
COORDINATES: similar to AA sequence:RefSeq:WP_006608476.1
COORDINATES: similar to AA sequence:RefSeq:WP_011264761.1
COORDINATES: similar to AA sequence:RefSeq:WP_012751345.1
COORDINATES: similar to AA sequence:RefSeq:WP_004023956.1
COORDINATES: similar to AA sequence:RefSeq:WP_020003153.1
COORDINATES: similar to AA sequence:RefSeq:WP_004417024.1
COORDINATES: similar to AA sequence:RefSeq:WP_005683265.1
COORDINATES: similar to AA sequence:RefSeq:WP_004023960.1
COORDINATES: similar to AA sequence:RefSeq:WP_010925391.1
GO:0003723 - RNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
COORDINATES: protein motif:HMM:NF005519.0
nicotinate-nucleotide adenylyltransferase
COORDINATES: protein motif:HMM:NF013015.2
iron-sulfur cluster assembly scaffold protein
COORDINATES: protein motif:HMM:NF012488.2
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_004416650.1
COORDINATES: protein motif:HMM:NF013216.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
transcription antitermination factor NusB
COORDINATES: similar to AA sequence:RefSeq:WP_011265034.1
COORDINATES: similar to AA sequence:RefSeq:WP_011265035.1
GO:0008094 - ATP-dependent activity, acting on DNA [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: protein motif:HMM:NF001882.0
COORDINATES: similar to AA sequence:RefSeq:WP_010925152.1
GO:0009328 - phenylalanine-tRNA ligase complex [Evidence IEA]
GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA]
GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IEA]
phenylalanine--tRNA ligase subunit alpha
COORDINATES: protein motif:HMM:NF023428.2
COORDINATES: protein motif:HMM:NF019976.2
nuclease-related domain-containing protein
COORDINATES: protein motif:HMM:NF013980.2
COORDINATES: similar to AA sequence:RefSeq:WP_013302242.1
COORDINATES: similar to AA sequence:RefSeq:WP_004795757.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00023
COORDINATES: similar to AA sequence:RefSeq:WP_004416335.1
COORDINATES: similar to AA sequence:RefSeq:WP_012498071.1
COORDINATES: similar to AA sequence:RefSeq:WP_013054563.1
COORDINATES: protein motif:HMM:NF040145.1
COORDINATES: similar to AA sequence:RefSeq:WP_011206113.1
COORDINATES: protein motif:HMM:NF005518.0
COORDINATES: similar to AA sequence:RefSeq:WP_004414534.1
COORDINATES: protein motif:HMM:TIGR00431.1
GO:0004730 - pseudouridylate synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025496.2
COORDINATES: protein motif:HMM:NF016289.2
COORDINATES: similar to AA sequence:RefSeq:WP_010320876.1
GO:0015935 - small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006608729.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]; GO:0006400 - tRNA modification [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00594.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014759.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
5'-3' exonuclease H3TH domain-containing protein
COORDINATES: protein motif:HMM:TIGR00152.1
GO:0004140 - dephospho-CoA kinase activity [Evidence IEA]
GO:0015937 - coenzyme A biosynthetic process [Evidence IEA]
Dephospho-CoA kinase (CoaE) performs the final step in coenzyme A biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF018914.2
COORDINATES: similar to AA sequence:RefSeq:WP_011283362.1
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0019682 - glyceraldehyde-3-phosphate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
type I glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: protein motif:HMM:NF021075.2
COORDINATES: protein motif:HMM:NF004046.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006886329.1
YbaB/EbfC family nucleoid-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_004416096.1
GO:0004798 - thymidylate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024575.2
COORDINATES: similar to AA sequence:RefSeq:WP_020002847.1
GO:0008649 - rRNA methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0000451 - rRNA 2'-O-methylation [Evidence IEA]
16S rRNA (cytidine(1402)-2'-O)-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_010321030.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004797 - thymidine kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013772.2
COORDINATES: similar to AA sequence:RefSeq:WP_004416615.1
COORDINATES: similar to AA sequence:RefSeq:WP_010925540.1
GO:0009330 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex [Evidence IEA]
DNA topoisomerase (ATP-hydrolyzing) subunit B
COORDINATES: protein motif:HMM:NF015944.2
COORDINATES: similar to AA sequence:RefSeq:WP_004416602.1
COORDINATES: similar to AA sequence:RefSeq:WP_004416300.1
RNA-binding S4 domain-containing protein
COORDINATES: protein motif:HMM:TIGR00663.1
COORDINATES: protein motif:HMM:NF001154.0
chromosomal replication initiator protein DnaA
COORDINATES: similar to AA sequence:RefSeq:WP_004416307.1
COORDINATES: protein motif:HMM:NF013022.2
GO:0004526 - ribonuclease P activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014186.2
COORDINATES: similar to AA sequence:RefSeq:WP_005684004.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0051301 - cell division [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02432.1
GO:0016879 - ligase activity, forming carbon-nitrogen bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013302354.1
GO:0004045 - aminoacyl-tRNA hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024991.2
COORDINATES: similar to AA sequence:RefSeq:WP_004796054.1
GO:0004828 - serine-tRNA ligase activity [Evidence IEA]
GO:0006434 - seryl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014680.2
COORDINATES: protein motif:HMM:NF014881.2
bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_004414744.1
COORDINATES: protein motif:HMM:NF017868.2
COORDINATES: similar to AA sequence:RefSeq:WP_004416343.1
COORDINATES: similar to AA sequence:RefSeq:WP_013354457.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE
COORDINATES: protein motif:HMM:TIGR03725.1
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB
COORDINATES: similar to AA sequence:RefSeq:WP_011264650.1
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD
COORDINATES: protein motif:HMM:NF013854.2
GO:0016462 - pyrophosphatase activity [Evidence IEA]
RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
COORDINATES: similar to AA sequence:RefSeq:WP_004420688.1
GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0051068 - dihydrolipoamide metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004416586.1
COORDINATES: protein motif:HMM:TIGR02191.1
GO:0004525 - ribonuclease III activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011264932.1
GO:0043811 - phosphate:acyl-[acyl carrier protein] acyltransferase activity [Evidence IEA]
GO:0008610 - lipid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006886173.1
COORDINATES: protein motif:HMM:NF033817.2
COORDINATES: protein motif:HMM:NF013212.2
COORDINATES: similar to AA sequence:RefSeq:WP_004416495.1
GO:0009408 - response to heat [Evidence IEA]
heat-inducible transcriptional repressor HrcA
COORDINATES: protein motif:HMM:NF012314.2
COORDINATES: similar to AA sequence:RefSeq:WP_004795405.1
GO:0004827 - proline-tRNA ligase activity [Evidence IEA]
GO:0006433 - prolyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014664.2
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011264704.1
COORDINATES: similar to AA sequence:RefSeq:WP_004415368.1
GO:0008961 - phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity [Evidence IEA]
GO:0009249 - protein lipoylation [Evidence IEA]
prolipoprotein diacylglyceryl transferase
COORDINATES: protein motif:HMM:NF022525.2
COORDINATES: similar to AA sequence:RefSeq:WP_015510948.1
COORDINATES: protein motif:HMM:NF024835.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011949832.1
COORDINATES: similar to AA sequence:RefSeq:WP_013456179.1
COORDINATES: similar to AA sequence:RefSeq:WP_013054539.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026220.1