Methylophaga frappieri plasmid unnamed, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.
Complete genome sequences of Methylophaga sp. strain JAM1 and Methylophaga sp. strain JAM7
Submitted (28-FEB-2012) Laboratoire de Richard Villemur, INRS-Institut Armand-Frappier, 531, Boulevard des Prairies, Laval, Quebec H7V 1B7, Canada
REFSEQ INFORMATION: The reference sequence is identical to\nCP003381.1.\nStrain available from the Richard Villemur laboratory at\nINRS-Institut Armand-Frappier.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/22/2023 14:26:17\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,660\nCDSs (total) :: 2,606\nGenes (coding) :: 2,589\nCDSs (with protein) :: 2,589\nGenes (RNA) :: 54\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 41\nncRNAs :: 4\nPseudo Genes (total) :: 17\nCDSs (without protein) :: 17\nPseudo Genes (ambiguous residues) :: 0 of 17\nPseudo Genes (frameshifted) :: 8 of 17\nPseudo Genes (incomplete) :: 8 of 17\nPseudo Genes (internal stop) :: 2 of 17\nPseudo Genes (multiple problems) :: 1 of 17\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008929992.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014579470.1
COORDINATES: similar to AA sequence:RefSeq:WP_014579469.1
COORDINATES: similar to AA sequence:RefSeq:WP_014708245.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008929949.1
COORDINATES: similar to AA sequence:RefSeq:WP_008929950.1
COORDINATES: similar to AA sequence:RefSeq:WP_012806831.1
COORDINATES: similar to AA sequence:RefSeq:WP_008929952.1
COORDINATES: similar to AA sequence:RefSeq:WP_014708247.1
COORDINATES: similar to AA sequence:RefSeq:WP_010676131.1
COORDINATES: similar to AA sequence:RefSeq:WP_011013264.1
VirB4 family type IV secretion/conjugal transfer ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_008929956.1
COORDINATES: similar to AA sequence:RefSeq:WP_008929957.1
GO:0009291 - unidirectional conjugation [Evidence IEA]
P-type conjugative transfer protein TrbG
COORDINATES: similar to AA sequence:RefSeq:WP_011798704.1
COORDINATES: similar to AA sequence:RefSeq:WP_014579508.1
COORDINATES: similar to AA sequence:RefSeq:WP_014579507.1
P-type conjugative transfer protein TrbJ
COORDINATES: similar to AA sequence:RefSeq:WP_014579506.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0009292 - horizontal gene transfer [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014702683.1
GO:0015116 - sulfate transmembrane transporter activity [Evidence IEA]
GO:0000103 - sulfate assimilation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014707086.1
COORDINATES: similar to AA sequence:RefSeq:WP_014707085.1
COORDINATES: similar to AA sequence:RefSeq:WP_014579505.1
GO:0030255 - protein secretion by the type IV secretion system [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014579504.1
COORDINATES: similar to AA sequence:RefSeq:WP_014579503.1
COORDINATES: similar to AA sequence:RefSeq:WP_014579502.1
COORDINATES: similar to AA sequence:RefSeq:WP_008929965.1
COORDINATES: similar to AA sequence:RefSeq:WP_014708264.1
COORDINATES: similar to AA sequence:RefSeq:WP_008929968.1
COORDINATES: similar to AA sequence:RefSeq:WP_011783405.1
IS1380-like element ISMaq4 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_008929969.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008929972.1
COORDINATES: similar to AA sequence:RefSeq:WP_008929971.1
COORDINATES: similar to AA sequence:RefSeq:WP_014579493.1
COORDINATES: similar to AA sequence:RefSeq:WP_014579490.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005221527.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008929975.1
COORDINATES: similar to AA sequence:RefSeq:WP_000086826.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0008233 - peptidase activity [Evidence IEA]
conjugative transfer signal peptidase TraF
COORDINATES: similar to AA sequence:RefSeq:WP_011655356.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011137971.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014708279.1
conjugal transfer transcriptional regulator TraJ
COORDINATES: similar to AA sequence:RefSeq:WP_014708280.1
COORDINATES: similar to AA sequence:RefSeq:WP_011304098.1
COORDINATES: similar to AA sequence:RefSeq:WP_008929982.1
COORDINATES: similar to AA sequence:RefSeq:WP_014708282.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798727.1
COORDINATES: similar to AA sequence:RefSeq:WP_008929985.1
COORDINATES: similar to AA sequence:RefSeq:WP_014579477.1
COORDINATES: similar to AA sequence:RefSeq:WP_008929987.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_014579475.1
COORDINATES: similar to AA sequence:RefSeq:WP_008929989.1
COORDINATES: similar to AA sequence:RefSeq:WP_014579473.1
COORDINATES: similar to AA sequence:RefSeq:WP_008929991.1