Thermus oshimai JL-2 plasmid pTHEOS01, complete sequence.
Bacteria; Deinococcota; Deinococci; Thermales; Thermaceae; Thermus.
Whole Genome Sequencing of Thermus oshimai JL-2 and Thermus thermophilus JL-18, Incomplete Denitrifiers from the United States Great Basin
Submitted (06-JAN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP003250.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4090416\nSource DNA and organism available from Brian Hedlund\n(brian.hedland@unlv.edu)\nContacts: Brian Hedlund (brian.hedland@unlv.edu)\n Tanja Woyke (microbe@cuba.jgi-psf.org)\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Thermus oshimai JL-2\ncollection_date :: Missing\nlat_lon :: Missing\ndepth :: Missing\nalt_elev :: Missing\ncountry :: Missing\nenvironment :: Marine\nnum_replicons :: 3\nref_biomaterial :: Missing\nbiotic_relationship :: Free living\ntrophic_level :: Heterotroph\nrel_to_oxygen :: Missing\nisol_growth_condt :: Missing\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3 (pre-release)\nfinishing_strategy :: Finished\nGOLD Stamp ID :: Gi06476\nType Strain :: No\nFunding Program :: DOE-CSP 2010\nGene Calling Method :: Prodigal 1.4, GenePRIMP\nTemperature Range :: Thermophile\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Finished\nCurrent Finishing Status :: Finished\nAssembly Method :: Newbler v. 2.3\nGenome Coverage :: 30x\nSequencing Technology :: 454/Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/23/2023 08:49:52\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,567\nCDSs (total) :: 2,507\nGenes (coding) :: 2,481\nCDSs (with protein) :: 2,481\nGenes (RNA) :: 60\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 3\nPseudo Genes (total) :: 26\nCDSs (without protein) :: 26\nPseudo Genes (ambiguous residues) :: 0 of 26\nPseudo Genes (frameshifted) :: 5 of 26\nPseudo Genes (incomplete) :: 20 of 26\nPseudo Genes (internal stop) :: 5 of 26\nPseudo Genes (multiple problems) :: 4 of 26\nCRISPR Arrays :: 5\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_015065198.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015065199.1
GO:0018577 - catechol 2,3-dioxygenase activity [Evidence IEA]
GO:0009712 - catechol-containing compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015065200.1
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015065201.1
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018461897.1
tripartite tricarboxylate transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_018461898.1
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018461899.1
sugar phosphate isomerase/epimerase and 4-hydroxyphenylpyruvate domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015065205.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015065206.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_015065207.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065208.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015065209.1
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_015065210.1
aromatic-ring-hydroxylating dioxygenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_018461903.1
COORDINATES: similar to AA sequence:RefSeq:WP_018461904.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065213.1
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008632015.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018461907.1
COORDINATES: similar to AA sequence:RefSeq:WP_018461908.1
GO:0047443 - 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity [Evidence IEA]
4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase
COORDINATES: similar to AA sequence:RefSeq:WP_018461909.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065217.1
COORDINATES: similar to AA sequence:RefSeq:WP_014515693.1
COORDINATES: similar to AA sequence:RefSeq:WP_018466294.1
COORDINATES: similar to AA sequence:RefSeq:WP_015601129.1
COORDINATES: similar to AA sequence:RefSeq:WP_014515696.1
amino acid ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015065222.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065223.1
branched-chain amino acid ABC transporter ATP-binding protein/permease
COORDINATES: similar to AA sequence:RefSeq:WP_015065224.1
COORDINATES: similar to AA sequence:RefSeq:WP_018461918.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011174341.1
COORDINATES: similar to AA sequence:RefSeq:WP_014511299.1
COORDINATES: similar to AA sequence:RefSeq:WP_018111408.1
COORDINATES: similar to AA sequence:RefSeq:WP_014630517.1
BTAD domain-containing putative transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015065234.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015065235.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065483.1
COORDINATES: similar to AA sequence:RefSeq:WP_015716433.1
COORDINATES: similar to AA sequence:RefSeq:WP_018461923.1
COORDINATES: similar to AA sequence:RefSeq:WP_019857405.1
COORDINATES: similar to AA sequence:RefSeq:WP_013159674.1
COORDINATES: similar to AA sequence:RefSeq:WP_018461926.1
COORDINATES: similar to AA sequence:RefSeq:WP_018461927.1
COORDINATES: similar to AA sequence:RefSeq:WP_019551744.1
COORDINATES: similar to AA sequence:RefSeq:WP_014511178.1
COORDINATES: protein motif:HMM:NF033545.0
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014628971.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018461224.1
COORDINATES: similar to AA sequence:RefSeq:WP_018461238.1
COORDINATES: similar to AA sequence:RefSeq:WP_013158251.1
COORDINATES: similar to AA sequence:RefSeq:WP_013013529.1
COORDINATES: similar to AA sequence:RefSeq:WP_013013530.1
COORDINATES: similar to AA sequence:RefSeq:WP_013013531.1
COORDINATES: similar to AA sequence:RefSeq:WP_013013532.1
COORDINATES: similar to AA sequence:RefSeq:WP_013013533.1
COORDINATES: similar to AA sequence:RefSeq:WP_013159691.1
COORDINATES: similar to AA sequence:RefSeq:WP_013013513.1
COORDINATES: similar to AA sequence:RefSeq:WP_019551602.1
COORDINATES: similar to AA sequence:RefSeq:WP_019551601.1
COORDINATES: similar to AA sequence:RefSeq:WP_003048856.1
GO:0004386 - helicase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019551615.1
COORDINATES: similar to AA sequence:RefSeq:WP_013159682.1
GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]
GO:0030163 - protein catabolic process [Evidence IEA]
BREX system Lon protease-like protein BrxL
COORDINATES: similar to AA sequence:RefSeq:WP_013013525.1
COORDINATES: similar to AA sequence:RefSeq:WP_013013524.1
COORDINATES: similar to AA sequence:RefSeq:WP_015586528.1
COORDINATES: similar to AA sequence:RefSeq:WP_013013514.1
COORDINATES: similar to AA sequence:RefSeq:WP_009083247.1
GO:0008422 - beta-glucosidase activity [Evidence IEA]
GO:0030245 - cellulose catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014630557.1
COORDINATES: similar to AA sequence:RefSeq:WP_014630556.1
COORDINATES: similar to AA sequence:RefSeq:WP_014630555.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014511263.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011172772.1
GO:0008902 - hydroxymethylpyrimidine kinase activity [Evidence IEA]; GO:0008972 - phosphomethylpyrimidine kinase activity [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_015065277.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_015065278.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065279.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015065280.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015065281.1
COORDINATES: similar to AA sequence:RefSeq:WP_014510080.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015065283.1
GO:0004789 - thiamine-phosphate diphosphorylase activity [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_018461807.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065285.1
GO:0004852 - uroporphyrinogen-III synthase activity [Evidence IEA]
GO:0006780 - uroporphyrinogen III biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018461809.1
bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase
COORDINATES: similar to AA sequence:RefSeq:WP_014629897.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0004604 - phosphoadenylyl-sulfate reductase (thioredoxin) activity [Evidence IEA]
GO:0019379 - sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014515751.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015065289.1
GO:0004851 - uroporphyrin-III C-methyltransferase activity [Evidence IEA]
GO:0019354 - siroheme biosynthetic process [Evidence IEA]
uroporphyrinogen-III C-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_018461810.1
COORDINATES: similar to AA sequence:RefSeq:WP_018461811.1
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_018461812.1
GO:0042242 - cobyrinic acid a,c-diamide synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018461813.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065469.1
GO:0015074 - DNA integration [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008631380.1
GO:0008817 - corrinoid adenosyltransferase activity [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
cob(I)yrinic acid a,c-diamide adenosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_015065296.1
adenosylcobinamide-GDP ribazoletransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008632686.1
heavy metal-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018461815.1
GO:0008939 - nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity [Evidence IEA]
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014514568.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_014630526.1
COORDINATES: similar to AA sequence:RefSeq:WP_008631402.1
GO:0008168 - methyltransferase activity [Evidence IEA]
cobalt-precorrin-5B (C(1))-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014630527.1
COORDINATES: similar to AA sequence:RefSeq:WP_008631406.1
bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014511288.1
COORDINATES: similar to AA sequence:RefSeq:WP_014630530.1
cobalt-precorrin-4/precorrin-4 C(11)-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014630531.1
GO:0030789 - precorrin-3B C17-methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003045512.1
COORDINATES: similar to AA sequence:RefSeq:WP_011174542.1
GO:0016829 - lyase activity [Evidence IEA]
CbiX/SirB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008631423.1
COORDINATES: similar to AA sequence:RefSeq:WP_008631424.1
COORDINATES: similar to AA sequence:RefSeq:WP_013013249.1
GO:0016880 - acid-ammonia (or amide) ligase activity [Evidence IEA]
adenosylcobinamide-phosphate synthase CbiB
COORDINATES: similar to AA sequence:RefSeq:WP_014511283.1
COORDINATES: similar to AA sequence:RefSeq:WP_003048753.1
COORDINATES: similar to AA sequence:RefSeq:WP_018461819.1
COORDINATES: similar to AA sequence:RefSeq:WP_018461820.1
COORDINATES: similar to AA sequence:RefSeq:WP_014514563.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065317.1
GO:0003858 - 3-hydroxybutyrate dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011172784.1
COORDINATES: similar to AA sequence:RefSeq:WP_014515755.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003048319.1
IS200/IS605 family element transposase accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_018461833.1
COORDINATES: protein motif:HMM:NF019575.2
COORDINATES: similar to AA sequence:RefSeq:WP_015065322.1
prepilin-type N-terminal cleavage/methylation domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018461835.1
COORDINATES: similar to AA sequence:RefSeq:WP_018461836.1
pilus assembly PilX N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018461837.1
GO:0016791 - phosphatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015065326.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065327.1
GO:0008254 - 3'-nucleotidase activity [Evidence IEA]; GO:0008253 - 5'-nucleotidase activity [Evidence IEA]
GO:0006950 - response to stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018461839.1
COORDINATES: similar to AA sequence:RefSeq:WP_014515551.1
COORDINATES: similar to AA sequence:RefSeq:WP_018461841.1
COORDINATES: similar to AA sequence:RefSeq:WP_018461842.1
COORDINATES: similar to AA sequence:RefSeq:WP_018461843.1
Fe3+-hydroxamate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014514625.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065334.1
ribonucleotide-diphosphate reductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_018461846.1
GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_018461847.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_018461848.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065338.1
COORDINATES: similar to AA sequence:RefSeq:WP_014514606.1
esterase-like activity of phytase family protein
COORDINATES: protein motif:HMM:TIGR01766.2
COORDINATES: similar to AA sequence:RefSeq:WP_011174391.1
iron-siderophore ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011229088.1
COORDINATES: similar to AA sequence:RefSeq:WP_014515555.1
COORDINATES: similar to AA sequence:RefSeq:WP_011229086.1
COORDINATES: similar to AA sequence:RefSeq:WP_003048880.1
COORDINATES: similar to AA sequence:RefSeq:WP_011229084.1
COORDINATES: similar to AA sequence:RefSeq:WP_013015276.1
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_013015275.1
COORDINATES: similar to AA sequence:RefSeq:WP_013015272.1
COORDINATES: similar to AA sequence:RefSeq:WP_013013220.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_011174401.1
GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011229093.1
COORDINATES: similar to AA sequence:RefSeq:WP_015586455.1
COORDINATES: similar to AA sequence:RefSeq:WP_003046602.1
COORDINATES: similar to AA sequence:RefSeq:WP_003046612.1
COORDINATES: similar to AA sequence:RefSeq:WP_003046608.1
metal ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015065361.1
COORDINATES: similar to AA sequence:RefSeq:WP_014515536.1
COORDINATES: similar to AA sequence:RefSeq:WP_013013479.1
COORDINATES: similar to AA sequence:RefSeq:WP_011442049.1
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030955 - potassium ion binding [Evidence IEA]; GO:0004743 - pyruvate kinase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011020875.1
COORDINATES: similar to AA sequence:RefSeq:WP_014515539.1
COORDINATES: similar to AA sequence:RefSeq:WP_013013478.1
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013014323.1
COORDINATES: similar to AA sequence:RefSeq:WP_014514598.1
COORDINATES: similar to AA sequence:RefSeq:WP_014514597.1
COORDINATES: similar to AA sequence:RefSeq:WP_014514596.1
COORDINATES: protein motif:HMM:NF024674.2
COORDINATES: similar to AA sequence:RefSeq:WP_014514603.1
COORDINATES: similar to AA sequence:RefSeq:WP_014514602.1
COORDINATES: similar to AA sequence:RefSeq:WP_013013481.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065374.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065375.1
GO:0008675 - 2-dehydro-3-deoxy-phosphogluconate aldolase activity [Evidence IEA]; GO:0008700 - 4-hydroxy-2-oxoglutarate aldolase activity [Evidence IEA]
GO:0009255 - Entner-Doudoroff pathway through 6-phosphogluconate [Evidence IEA]; GO:0009084 - glutamine family amino acid biosynthetic process [Evidence IEA]
bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
COORDINATES: similar to AA sequence:RefSeq:WP_015065376.1
COORDINATES: similar to AA sequence:RefSeq:WP_011174522.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065378.1
COORDINATES: similar to AA sequence:RefSeq:WP_014630551.1
COORDINATES: similar to AA sequence:RefSeq:WP_011229213.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065381.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065382.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065383.1
TRAP transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF019846.2
COORDINATES: protein motif:HMM:NF013756.2
COORDINATES: similar to AA sequence:RefSeq:WP_018461862.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065385.1
COORDINATES: similar to AA sequence:RefSeq:WP_018461863.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_018461864.1
COORDINATES: similar to AA sequence:RefSeq:WP_019561368.1
COORDINATES: similar to AA sequence:RefSeq:WP_018461865.1
COORDINATES: similar to AA sequence:RefSeq:WP_014514485.1
COORDINATES: similar to AA sequence:RefSeq:WP_014199729.1
COORDINATES: similar to AA sequence:RefSeq:WP_018461866.1
Swt1 family HEPN domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018461867.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013757.2
IclR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF025690.2
COORDINATES: similar to AA sequence:RefSeq:WP_013555482.1
COORDINATES: similar to AA sequence:RefSeq:WP_017870097.1
COORDINATES: similar to AA sequence:RefSeq:WP_015717093.1
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: similar to AA sequence:RefSeq:WP_018461868.1
COORDINATES: similar to AA sequence:RefSeq:WP_018112020.1
COORDINATES: similar to AA sequence:RefSeq:WP_018112021.1
COORDINATES: similar to AA sequence:RefSeq:WP_014515672.1
COORDINATES: similar to AA sequence:RefSeq:WP_018461869.1
gamma-glutamyl-gamma-aminobutyrate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013458696.1
GO:0008836 - diaminopimelate decarboxylase activity [Evidence IEA]
GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015065404.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015065405.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065406.1
family 4 glycosyl hydrolase alpha-galactosidase/6-phospho-beta-glucosidase
COORDINATES: protein motif:HMM:NF014385.2
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013157549.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065409.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018461874.1
COORDINATES: similar to AA sequence:RefSeq:WP_015716963.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065412.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065413.1
COORDINATES: similar to AA sequence:RefSeq:WP_015716967.1
COORDINATES: similar to AA sequence:RefSeq:WP_018461878.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065416.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065417.1
COORDINATES: similar to AA sequence:RefSeq:WP_018461881.1
COORDINATES: similar to AA sequence:RefSeq:WP_018461882.1
COORDINATES: similar to AA sequence:RefSeq:WP_014511163.1
COORDINATES: similar to AA sequence:RefSeq:WP_018112018.1
CoA-acylating methylmalonate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_015065422.1
TAXI family TRAP transporter solute-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019551658.1
COORDINATES: similar to AA sequence:RefSeq:WP_014630487.1
COORDINATES: similar to AA sequence:RefSeq:WP_011229262.1
COORDINATES: similar to AA sequence:RefSeq:WP_014630489.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014514505.1
COORDINATES: similar to AA sequence:RefSeq:WP_014514504.1
COORDINATES: similar to AA sequence:RefSeq:WP_014514503.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_014514502.1
COORDINATES: similar to AA sequence:RefSeq:WP_014514501.1
COORDINATES: similar to AA sequence:RefSeq:WP_014514500.1
COORDINATES: similar to AA sequence:RefSeq:WP_014514499.1
COORDINATES: similar to AA sequence:RefSeq:WP_014514498.1
COORDINATES: similar to AA sequence:RefSeq:WP_013158861.1
COORDINATES: similar to AA sequence:RefSeq:WP_013158860.1
COORDINATES: similar to AA sequence:RefSeq:WP_018064286.1
COORDINATES: similar to AA sequence:RefSeq:WP_018461887.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012120908.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065440.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015717057.1
COORDINATES: similar to AA sequence:RefSeq:WP_018461891.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065443.1
GO:0016853 - isomerase activity [Evidence IEA]
GO:0006725 - cellular aromatic compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018461893.1
GO:0008701 - 4-hydroxy-2-oxovalerate aldolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015065445.1
GO:0008774 - acetaldehyde dehydrogenase (acetylating) activity [Evidence IEA]
acetaldehyde dehydrogenase (acetylating)
COORDINATES: similar to AA sequence:RefSeq:WP_015065446.1